Citrus Sinensis ID: 028804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTCVAPWGG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccEEEEEEEEEccccc
Coil and Loop (DISEMBL)
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHahntvcpssSLIVVYLGGHGWCYKSLIFTCVAPWGG
Flexible Loop (DISEMBL)
MSQVFEGYERQYCELSAGLSRKCTAASALdgelkkqklseiktglddADALIRKMDlearslqpnvKAMLLSKLREYKTDlnnlknevkrvtsgnvnqAARDELLESGMADAMMVSADQRGRLLMsterlnhstdrikesrrTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTCVAPWGG
Low Complexity Region (SEG)
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTCVAPWGG
Disordered region (IsUnstruct)
*******YERQYCELSAGLSRKCT**************************LI***************AMLLSKLREY*************************************************************************GVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTCVAPW**
Disordered Region (DISOPRED)
MSQVFEGYERQYCELSAGLS**********************TGLDDADALIRK*******************LREYKTDLNNLKNE*******************************************************TMLETEELGVSILQDLHQQRQ************SSLIVVYLGGHGWCYKSLIFTCVAPWGG
Disordered Region (DISEMBL)
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTCVAPWGG
Disordered Region (DISPRO)
*SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS**********************SADQR**L*MSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTCVAPWG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVxxxxxxxxxxxxxxxxxxxxxxxxxxxxNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTCVAPWGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9SEL6	221	Vesicle transport v-SNARE	yes	no	0.847	0.778	0.732	1e-69
Q9LVP9	221	Vesicle transport v-SNARE	no	no	0.847	0.778	0.732	9e-69
Q9SEL5	222	Vesicle transport v-SNARE	no	no	0.837	0.765	0.713	3e-65
O89116	217	Vesicle transport through	yes	no	0.812	0.760	0.323	5e-18
Q96AJ9	217	Vesicle transport through	yes	no	0.802	0.751	0.321	4e-17
Q9JI51	224	Vesicle transport through	yes	no	0.827	0.75	0.302	6e-16
P78768	214	Vesicle transport v-SNARE	yes	no	0.783	0.742	0.323	6e-10
Q04338	217	t-SNARE VTI1 OS=Saccharom	yes	no	0.709	0.663	0.310	1e-07
Q54CK6	217	Vesicle transport through	yes	no	0.758	0.709	0.264	9e-07
Q9UEU0	232	Vesicle transport through	no	no	0.655	0.573	0.306	3e-06

>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2

 Score =  262 bits (669), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/172 (73%), Positives = 150/172 (87%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS VF+GYERQYCELSA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR
Sbjct: 1   MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           +L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD    SADQR
Sbjct: 61  TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL+MSTERL  +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH T+
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETL 172

May function as a v-SNARE responsible for targeting AtELP-containing vesicles from the trans-Golgi network (TGN) to the prevacuolar compartment (PVC). May be also involved in retrograde traffic to the cis-Golgi.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1

 Score =  259 bits (662), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 126/172 (73%), Positives = 149/172 (86%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQ FE YERQYCE+SA LS+KCT+A ALDGE KKQ LSEIK+G+++A+AL++KMDLEAR
Sbjct: 1   MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           +L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N  ARDELLE+GMAD +  SADQR
Sbjct: 61  NLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL+MST+ L  +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH T+
Sbjct: 121 SRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETL 172

May function as a v-SNARE responsible for targeting vesicles involved in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3

 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 145/171 (84%), Gaps = 1/171 (0%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEA 59
           MS VFEGYERQYCELS  LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEA
Sbjct: 1   MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query: 60  RSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQ 119
           RSLQP+ KA+ LSKLREYK+DLN LK E KRV+S +   ++R+EL+ESGMAD   VSADQ
Sbjct: 61  RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query: 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHN 170
           RGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHN 171

May function as a v-SNARE responsible for the docking or fusion of transport vesicles within the trans-Golgi network (TGN). May be also involved in retrograde traffic to the cis-Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1

 Score = 90.9 bits (224), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 96/170 (56%), Gaps = 5/170 (2%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct: 1   MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
            + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     DA   S +QR
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDE-VRNELL----GDAGNSSENQR 115

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHN 170
             LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A +
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARD 165

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be concerned with increased secretion of cytokines associated with cellular senescence.

Mus musculus (taxid: 10090)

>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 5/168 (2%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct: 1   MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
            + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     D    S +QR
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDE-VRNELL----GDDGNSSENQR 115

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
             LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRA 163

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be involved in increased cytokine secretion associated with cellular senescence.

Homo sapiens (taxid: 9606)

>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1

 Score = 84.0 bits (206), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 100/172 (58%), Gaps = 4/172 (2%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS  FEGYE+ +  L+A ++ K +    L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct: 1   MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELL-ESGMA--DAMMVSA 117
            + P  + M  +++R YK ++  L+ + KR      ++  R+ELL ++G +  + ++   
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDE-VRNELLGDAGNSSENQLIKLR 119

Query: 118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAH 169
           ++R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A 
Sbjct: 120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRAR 171

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2 (By similarity). May be concerned with increased secretion of cytokines associated with cellular senescence.

Rattus norvegicus (taxid: 10116)

>sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 5   FEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP 64
            E YE++Y  L A +  K    S   GE     +   +  L++ D +I +M++E   +  
Sbjct: 1   METYEQEYRLLRADIEEKLNDLSK-SGE--NSVIQSCQRLLNEIDEVIGQMEIEITGIPT 57

Query: 65  NVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQA---ARDELLESGMADAMMVSADQRG 121
           + + ++  ++R Y++ L   +  +K     +  +A    RDE   SG   A     DQR 
Sbjct: 58  SERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGNRDET--SGDYIASDQDYDQRT 115

Query: 122 RLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
           RLL  T RL  S+ R+ ES+R   ETE +G SIL+DLH QR  L H+
Sbjct: 116 RLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHS 162

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 14/158 (8%)

Query: 31  GELKKQKLSEIKTGL-------DDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTDL 81
            E   Q LS+  T L       D+   L+ +MD+E  +     + +A   +KLRE+K   
Sbjct: 24  AEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK--- 80

Query: 82  NNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESR 141
             +++++KR     V+   RD L   G  +A  +  DQR +LL +   L  S DR+K++ 
Sbjct: 81  KTIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDAS 138

Query: 142 RTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLI 179
           R   ETE +G  I+ DL  QR++L +A  T+  + S +
Sbjct: 139 RIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYV 176

t-SNARE found in various SNARE complexes involved in multiple transport pathways. The composition of the t-SNARE complexes is specific for a limited number of v-SNAREs and therefore allows only the vesicles carrying the matching v-SNARE to fuse.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 4   VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63
           VFE  E+ +  +   ++R+        GE KK  + E++  +D+A   I +M+  A++  
Sbjct: 3   VFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNHP 62

Query: 64  PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSAD-QRGR 122
             +K  L +K ++Y +D+   K EV+     + NQ   +    S   D      D QR  
Sbjct: 63  QRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPW--SNAPDDYQSQYDNQRQH 118

Query: 123 LLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQ 161
           LL  +  L+ ++DR+  + +   ++E++G +IL DL +Q
Sbjct: 119 LLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQ 157

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 32  ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
           E KK+ + +      +A+  + +M+ E R    + +  ++SKLR Y+ DL  L  EV R 
Sbjct: 39  EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV-RS 97

Query: 92  TSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETE 148
           T        R ++     A   + M     QR  LL  TE LN +T  I+ S R   ET+
Sbjct: 98  TPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETD 157

Query: 149 ELGVSILQDLHQQRQSL 165
           ++G  I+++L +QR  L
Sbjct: 158 QIGSEIIEELGEQRDQL 174

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
225457347	221	PREDICTED: vesicle transport v-SNARE 13	0.847	0.778	0.877	6e-81
297733941	279	unnamed protein product [Vitis vinifera]	0.847	0.616	0.877	3e-80
255547331	221	vesicle transport V-snare protein vti1a,	0.847	0.778	0.848	9e-80
255578288	220	vesicle transport V-snare protein vti1a,	0.847	0.781	0.837	2e-79
78191454	221	vesicle transport v-SNARE 11-like [Solan	0.847	0.778	0.831	1e-77
76160978	221	unknown [Solanum tuberosum]	0.847	0.778	0.825	1e-76
224080207	220	predicted protein [Populus trichocarpa]	0.847	0.781	0.802	2e-76
358249256	221	uncharacterized protein LOC100815385 [Gl	0.847	0.778	0.784	3e-75
225452897	221	PREDICTED: vesicle transport v-SNARE 13	0.847	0.778	0.796	5e-75
296082955	285	unnamed protein product [Vitis vinifera]	0.847	0.603	0.796	1e-74

>gi|225457347|ref|XP_002284602.1| PREDICTED: vesicle transport v-SNARE 13 [Vitis vinifera]

 Score =  305 bits (781), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/172 (87%), Positives = 159/172 (92%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQVFEGYERQYCELSA LSRKCTAAS L+GE KKQK+SEIK GLDDADALIRKMDLEAR
Sbjct: 1   MSQVFEGYERQYCELSANLSRKCTAASLLNGEQKKQKVSEIKAGLDDADALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQP+VKAMLL+KLREYKTDLNN+KNEVKR+TS N NQAARD LLESGMAD M VSADQ+
Sbjct: 61  SLQPSVKAMLLAKLREYKTDLNNVKNEVKRITSANTNQAARDNLLESGMADTMTVSADQK 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RLLMST RLN S DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNT+
Sbjct: 121 TRLLMSTGRLNQSGDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTL 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733941|emb|CBI15188.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/172 (87%), Positives = 159/172 (92%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQVFEGYERQYCELSA LSRKCTAAS L+GE KKQK+SEIK GLDDADALIRKMDLEAR
Sbjct: 59  MSQVFEGYERQYCELSANLSRKCTAASLLNGEQKKQKVSEIKAGLDDADALIRKMDLEAR 118

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQP+VKAMLL+KLREYKTDLNN+KNEVKR+TS N NQAARD LLESGMAD M VSADQ+
Sbjct: 119 SLQPSVKAMLLAKLREYKTDLNNVKNEVKRITSANTNQAARDNLLESGMADTMTVSADQK 178

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RLLMST RLN S DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNT+
Sbjct: 179 TRLLMSTGRLNQSGDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTL 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547331|ref|XP_002514723.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis] gi|223546327|gb|EEF47829.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis]

 Score =  301 bits (771), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 146/172 (84%), Positives = 160/172 (93%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQVF+GYERQYCELSA LSRKCT+ S LDGELKKQKLSEIKTGLD+A+ LI+KMDLEAR
Sbjct: 1   MSQVFDGYERQYCELSANLSRKCTSTSVLDGELKKQKLSEIKTGLDEAETLIQKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           S  PN+KA+LL+KLREYKTDLNNLKNE KR+TS ++NQA RDELLESG ADA MVSADQR
Sbjct: 61  SFPPNLKAVLLAKLREYKTDLNNLKNESKRITSSHINQATRDELLESGKADATMVSADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
           GRLLMSTERLN STDRIKESRRTMLETEELGVS+LQDLHQQRQ+LLHAHNT+
Sbjct: 121 GRLLMSTERLNQSTDRIKESRRTMLETEELGVSVLQDLHQQRQALLHAHNTL 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578288|ref|XP_002530011.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis] gi|223530490|gb|EEF32373.1| vesicle transport V-snare protein vti1a, putative [Ricinus communis]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/172 (83%), Positives = 162/172 (94%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS+VFEGYERQYCELSA LSRKCT A ALDGE KKQKLSE+K GL+DA++LIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANLSRKCTTAGALDGEQKKQKLSEVKAGLEDAESLIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQPNVKA+LL+KLREYK+DLNNLK+EVKR+ SGN+N AARDELLESGMADA+  SADQR
Sbjct: 61  SLQPNVKAVLLAKLREYKSDLNNLKSEVKRIASGNLNSAARDELLESGMADALTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL+M+TERLNHS+DR+K+SRRTMLETEELGVSILQDLHQQRQSLLHAHNT+
Sbjct: 121 SRLMMTTERLNHSSDRVKDSRRTMLETEELGVSILQDLHQQRQSLLHAHNTL 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78191454|gb|ABB29948.1| vesicle transport v-SNARE 11-like [Solanum tuberosum]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/172 (83%), Positives = 160/172 (93%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQVFEGYERQYCELSA L++KC +A+ LDGE KKQK+SEIK GLDDA+ALIRKMDLEAR
Sbjct: 1   MSQVFEGYERQYCELSANLTKKCNSATILDGEQKKQKVSEIKAGLDDAEALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SL PNVKA LL+KLREYK+DLNNLK EVKR+TSGN NQAARDELLESGMADA MVSADQR
Sbjct: 61  SLPPNVKATLLAKLREYKSDLNNLKTEVKRITSGNANQAARDELLESGMADANMVSADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL+MSTERLN S+DRI++SR+TMLETE+LGVSILQDLHQQRQSLLHAH+T+
Sbjct: 121 QRLMMSTERLNRSSDRIRDSRKTMLETEDLGVSILQDLHQQRQSLLHAHDTL 172

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76160978|gb|ABA40452.1| unknown [Solanum tuberosum]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/172 (82%), Positives = 159/172 (92%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MSQVFEGYERQYCELSA L++KC +A+ LDGE KKQK+SEIK GLDDA+ALIRKMDLEAR
Sbjct: 1   MSQVFEGYERQYCELSANLTKKCNSATILDGEQKKQKVSEIKAGLDDAEALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SL PNVKA LL+KLREYK+DLNNLK EVKR+TSGN NQAARDELLESGMADA MVSADQR
Sbjct: 61  SLPPNVKATLLAKLREYKSDLNNLKTEVKRITSGNANQAARDELLESGMADANMVSADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL+MSTERLN S+ RI++SR+TMLETE+LGVSILQDLHQQRQSLLHAH+T+
Sbjct: 121 QRLMMSTERLNRSSGRIRDSRKTMLETEDLGVSILQDLHQQRQSLLHAHDTL 172

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080207|ref|XP_002306052.1| predicted protein [Populus trichocarpa] gi|118481869|gb|ABK92871.1| unknown [Populus trichocarpa] gi|222849016|gb|EEE86563.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 159/172 (92%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           M+ +FEGYERQYCELS+ LSRKCTAA +LDGE KKQK+SE+K GL+DA+ALIRKMDLEAR
Sbjct: 1   MTDIFEGYERQYCELSSNLSRKCTAALSLDGEKKKQKISEVKAGLEDAEALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           +LQPNVKA+LL+KLREYK+DLNNLK EVKR+ SGN+N AARDELLE+GM DA+M S DQR
Sbjct: 61  NLQPNVKAVLLAKLREYKSDLNNLKTEVKRIGSGNLNAAARDELLEAGMTDALMASGDQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL+M+TERL HS+DRIK+SRRTMLETEELGVSILQDLHQQRQSLLHAHNT+
Sbjct: 121 SRLMMATERLYHSSDRIKDSRRTMLETEELGVSILQDLHQQRQSLLHAHNTL 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249256|ref|NP_001239763.1| uncharacterized protein LOC100815385 [Glycine max] gi|255634551|gb|ACU17638.1| unknown [Glycine max]

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 159/172 (92%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           MS VFEGYERQYCELSA L++KCTAA AL+GE KKQK+SE+K G+D+A+ALIRKMDLEAR
Sbjct: 1   MSNVFEGYERQYCELSANLAKKCTAAGALNGEQKKQKVSEVKAGIDEAEALIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
           SLQPN+K +LL+KLREYK+DLNNLK+EVK++ SGN+N +ARDELLESGMADAM  SADQR
Sbjct: 61  SLQPNIKGVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADAMTASADQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL++STERLN ++DR+K+SRRTMLETEELGVSILQDLH QRQSLLHAHNT+
Sbjct: 121 TRLMVSTERLNKTSDRVKDSRRTMLETEELGVSILQDLHSQRQSLLHAHNTL 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452897|ref|XP_002283972.1| PREDICTED: vesicle transport v-SNARE 13 [Vitis vinifera]

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 159/172 (92%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           M +VF+GYERQYCELSA LS+KCT AS LDGE K+Q++SEIK GLD+AD+LIRKMDLEAR
Sbjct: 1   MGEVFDGYERQYCELSANLSKKCTTASLLDGEQKRQQISEIKAGLDEADSLIRKMDLEAR 60

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
            LQPNVKA+LL+KLREYK+DLNNLK+EVKR+ S N NQAARD+LLESGMADAM VSA+QR
Sbjct: 61  GLQPNVKAVLLAKLREYKSDLNNLKSEVKRIASANSNQAARDDLLESGMADAMSVSANQR 120

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL+MST+RLN S+DRIKES+RTMLETEELGVSILQDLHQQRQSLLHA++T+
Sbjct: 121 ARLMMSTDRLNQSSDRIKESKRTMLETEELGVSILQDLHQQRQSLLHANDTL 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082955|emb|CBI22256.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 159/172 (92%)

Query: 1   MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           M +VF+GYERQYCELSA LS+KCT AS LDGE K+Q++SEIK GLD+AD+LIRKMDLEAR
Sbjct: 65  MGEVFDGYERQYCELSANLSKKCTTASLLDGEQKRQQISEIKAGLDEADSLIRKMDLEAR 124

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
            LQPNVKA+LL+KLREYK+DLNNLK+EVKR+ S N NQAARD+LLESGMADAM VSA+QR
Sbjct: 125 GLQPNVKAVLLAKLREYKSDLNNLKSEVKRIASANSNQAARDDLLESGMADAMSVSANQR 184

Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            RL+MST+RLN S+DRIKES+RTMLETEELGVSILQDLHQQRQSLLHA++T+
Sbjct: 185 ARLMMSTDRLNQSSDRIKESKRTMLETEELGVSILQDLHQQRQSLLHANDTL 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2175733	221	SGR4 "SHOOT GRAVITROPSIM 4" [A	0.847	0.778	0.732	1.2e-63
TAIR|locus:2200595	222	VTI1B [Arabidopsis thaliana (t	0.837	0.765	0.713	1.7e-59
TAIR|locus:2094662	195	VTI13 "vesicle transport V-sna	0.596	0.620	0.735	5.7e-43
TAIR|locus:2164830	207	AT5G39630 [Arabidopsis thalian	0.793	0.777	0.503	3.5e-36
MGI|MGI:1855699	217	Vti1a "vesicle transport throu	0.812	0.760	0.323	2.1e-20
ASPGD|ASPL0000044157	224	AN1973 [Emericella nidulans (t	0.842	0.763	0.301	7.2e-20
UNIPROTKB|Q96AJ9	217	VTI1A "Vesicle transport throu	0.802	0.751	0.321	9.2e-20
UNIPROTKB|J9NRK3	217	VTI1A "Uncharacterized protein	0.802	0.751	0.321	1.5e-19
RGD|621490	224	Vti1a "vesicle transport throu	0.822	0.745	0.304	1.9e-19
UNIPROTKB|E1BYU6	187	VTI1A "Uncharacterized protein	0.802	0.871	0.321	8.3e-19

TAIR|locus:2175733 SGR4 "SHOOT GRAVITROPSIM 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 126/172 (73%), Positives = 150/172 (87%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS VF+GYERQYCELSA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR
Sbjct:     1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
             +L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD    SADQR
Sbjct:    61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
              RL+MSTERL  +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH T+
Sbjct:   121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETL 172

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005770 "late endosome" evidence=IDA;TAS

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006896 "Golgi to vacuole transport" evidence=IGI

GO:0004872 "receptor activity" evidence=TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2200595 VTI1B [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 122/171 (71%), Positives = 145/171 (84%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEA 59
             MS VFEGYERQYCELS  LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEA
Sbjct:     1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query:    60 RSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQ 119
             RSLQP+ KA+ LSKLREYK+DLN LK E KRV+S +   ++R+EL+ESGMAD   VSADQ
Sbjct:    61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query:   120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHN 170
             RGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN
Sbjct:   121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHN 171

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0005770 "late endosome" evidence=TAS

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0005483 "soluble NSF attachment protein activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2094662 VTI13 "vesicle transport V-snare 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 89/121 (73%), Positives = 104/121 (85%)

Query:    52 IRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMAD 111
             ++KMDLEAR+L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N  ARDELLE+GMAD
Sbjct:    26 VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85

Query:   112 AMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNT 171
              +  SADQR RL+MST+ L  +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH T
Sbjct:    86 TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145

Query:   172 V 172
             +
Sbjct:   146 L 146

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

TAIR|locus:2164830 AT5G39630 [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 83/165 (50%), Positives = 117/165 (70%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS VF  Y++QY ELS  LS+KC+ A +L G  KK+KLSEI   L++A+ LI KMD  A 
Sbjct:     1 MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKEKLSEITYDLENAEKLISKMDHAAS 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
             +L PN+K++LL KL+E K+ L  L+NE+KR TS N+    R+E+LE+  AD     ADQR
Sbjct:    61 NLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQR 116

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSL 165
              RL+ STE L  + + IK+S+R +LETE +G+SIL++L +Q++SL
Sbjct:   117 SRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESL 161

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0000149 "SNARE binding" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=RCA

MGI|MGI:1855699 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Mus musculus (taxid:10090)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 55/170 (32%), Positives = 96/170 (56%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct:     1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
              + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     DA   S +QR
Sbjct:    61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDAGNSSENQR 115

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHN 170
               LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A +
Sbjct:   116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARD 165

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=ISO

ASPGD|ASPL0000044157 AN1973 [Emericella nidulans (taxid:162425)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 53/176 (30%), Positives = 98/176 (55%)

Query:     2 SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS 61
             S++   YE +   + A L++K    + L GE +   + + +  L++A  L+ +M LE ++
Sbjct:    11 SEMLSSYETELNLVQADLNQKLDQIAELSGEQRNSTIRQAERALEEATELLDQMRLEKQN 70

Query:    62 LQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRG 121
             +    ++ + ++ R Y TD++  K ++K ++     +A   +       DA +   +QR 
Sbjct:    71 IPSAARSKVNTRFRNYATDIDEAKRKLKSLSDDR--KALFGDRYTDDPQDAHL---EQRQ 125

Query:   122 RLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSS 177
             +LL  TERL  S+ R++ES+R  LETE +G ++L DLHQQR+++ H H  +  S S
Sbjct:   126 QLLSGTERLERSSARLRESQRIALETEGIGANVLADLHQQRETITHTHGMLGQSES 181

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0030428 "cell septum" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006896 "Golgi to vacuole transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

UNIPROTKB|Q96AJ9 VTI1A "Vesicle transport through interaction with t-SNAREs homolog 1A" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 54/168 (32%), Positives = 94/168 (55%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct:     1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
              + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     D    S +QR
Sbjct:    61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDDGNSSENQR 115

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
               LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A
Sbjct:   116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRA 163

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0031201 "SNARE complex" evidence=TAS

UNIPROTKB|J9NRK3 VTI1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 54/168 (32%), Positives = 94/168 (55%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct:     1 MSSDFEGYEQDFAVLTAEITGKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
              + P  + M  +++R YK ++  L+ + KR      ++  R+ELL     D    S +QR
Sbjct:    61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDDGNSSENQR 115

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
               LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A
Sbjct:   116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRA 163

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|621490 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Rattus norvegicus (taxid:10116)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 52/171 (30%), Positives = 100/171 (58%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FEGYE+ +  L+A ++ K +    L  + KKQ ++ ++  L++A  L+ +MDLE R
Sbjct:     1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELL-ESGMA--DAMMVSA 117
              + P  + M  +++R YK ++  L+ + KR      ++  R+ELL ++G +  + ++   
Sbjct:    61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELLGDAGNSSENQLIKLR 119

Query:   118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
             ++R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A
Sbjct:   120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRA 170

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO;ISS

GO:0043025 "neuronal cell body" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

UNIPROTKB|E1BYU6 VTI1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 54/168 (32%), Positives = 94/168 (55%)

Query:     1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
             MS  FE YE+ +  L+A ++ +      L G+ KKQ ++ I+  L++A  L+ +M+LE R
Sbjct:     1 MSSDFESYEQDFAVLTADITGRIGRVPKLLGDEKKQMVANIEKQLEEARELLEQMELEVR 60

Query:    61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
              + P  + M  S++R YK ++  L+ + KR      ++  R+ELL     D    S +QR
Sbjct:    61 EIPPQSRGMYSSRMRSYKQEMGKLEADFKRSRIAYSDEV-RNELL----GDDGNSSENQR 115

Query:   121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
               LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A
Sbjct:   116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRA 163

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SEL6	VTI11_ARATH	No assigned EC number	0.7325	0.8472	0.7782	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016295001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (221 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022484001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (224 aa)					•	•	•		0.815

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam05008	79	pfam05008, V-SNARE, Vesicle transport v-SNARE prot	2e-26
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	6e-11

>gnl|CDD|203149 pfam05008, V-SNARE, Vesicle transport v-SNARE protein N-terminus

 Score = 96.1 bits (240), Expect = 2e-26
 Identities = 34/79 (43%), Positives = 51/79 (64%)

Query: 12 YCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLL 71
          + EL A + RK      L GE +K  L EI+  LD+A+ L+ +M+LE R+L  + +A   
Sbjct: 1  FKELLAEIKRKLARIPKLSGEERKAALREIERKLDEAEELLDQMELEVRNLPSSERAKYN 60

Query: 72 SKLREYKTDLNNLKNEVKR 90
          +KLREYK++L+ LK E+KR
Sbjct: 61 AKLREYKSELDKLKRELKR 79

V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this. This domain is the N-terminal half of the V-Snare proteins. Length = 79

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 55.7 bits (135), Expect = 6e-11
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
           ERL    DR+K S R   ET  +G +IL+DLH QR++L  A N +
Sbjct: 1   ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKL 45

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	100.0
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	99.74
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.51
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.07
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	99.01
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	97.53
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	97.43
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	97.01
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	96.23
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	94.59
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	94.53
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	94.18
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.25
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	90.05
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	89.39
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	88.72
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	88.43
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	87.92
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	85.0
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	84.81
PF07527	43	Hairy_orange: Hairy Orange; InterPro: IPR003650 Th	84.75
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	83.84
smart00511	45	ORANGE Orange domain. This domain confers specific	82.22
TIGR00255	291	conserved hypothetical protein TIGR00255. The appa	81.2
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	80.88
PRK11820	288	hypothetical protein; Provisional	80.67
PRK15374	593	pathogenicity island 1 effector protein SipB; Prov	80.34
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	80.29
KOG4025	207	consensus Putative apoptosis related protein [Func	80.19

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-45  Score=290.36  Aligned_cols=180  Identities=53%  Similarity=0.738  Sum_probs=171.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028804            1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD   80 (203)
Q Consensus         1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~   80 (203)
                      ||++|+.||++|..+.++|+.+++.+++.++++|+..+++|+..++||+++|.||++||+.+||+.|..|..|+++||.+
T Consensus         1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksd   80 (220)
T KOG1666|consen    1 MSSLFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSD   80 (220)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804           81 LNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQ  160 (203)
Q Consensus        81 l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~  160 (203)
                      +++|+.+++...+......+|++++++...++.+.+.+||++||++|++|++++++|.+|+|+|.|||+||.+|+++|++
T Consensus        81 l~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~  160 (220)
T KOG1666|consen   81 LKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHG  160 (220)
T ss_pred             HHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998855444568999998766666777899999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhhccccccchhH
Q 028804          161 QRQSLLHAHNTVCPSSSLIV  180 (203)
Q Consensus       161 QRe~L~~~~~~l~~~d~~i~  180 (203)
                      |||+|++++.+|+++|+++.
T Consensus       161 QRe~L~rar~rL~~td~~lg  180 (220)
T KOG1666|consen  161 QREQLERARERLRETDANLG  180 (220)
T ss_pred             HHHHHHHHHHHHHhchhhhh
Confidence            99999999999999999776

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=99.74  E-value=5.2e-17  Score=113.13  Aligned_cols=79  Identities=38%  Similarity=0.648  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804           12 YCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR   90 (203)
Q Consensus        12 ~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~   90 (203)
                      |..++++|.+++..+++.+|++|+..+++++..|+||+++|++|++|++++|++.|..|+.+|+.||+++++|+++|++
T Consensus         1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~   79 (79)
T PF05008_consen    1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7889999999999999988899999999999999999999999999999999999999999999999999999999863

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=7.4e-13  Score=106.80  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=133.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhcCCh-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 028804            1 MSQVFEGYERQYCELSAGLSRKCTAASALDG-ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT   79 (203)
Q Consensus         1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~-~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~   79 (203)
                      |+.+|.+    .+..+++++..+..+++... .+-..++..++..|.++...|..|+.-+++.||+.|.+..-++.+.+.
T Consensus         1 m~~ly~~----t~~~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~   76 (213)
T KOG3251|consen    1 MDALYQS----TNRQLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVDQLLE   76 (213)
T ss_pred             CchHHHH----HHHHHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHH
Confidence            5556655    45667778888888876544 455678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCC----ChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028804           80 DLNNLKNEVKRVTSGNV----NQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSIL  155 (203)
Q Consensus        80 ~l~~l~~e~~~~~~~~~----~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il  155 (203)
                      ++..++..++.......    ...+|.+|++++|+...+......|..++..       .+|.+|++.+++.-.-|.+|+
T Consensus        77 d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~~~~D~el~~~-------d~l~~s~~~lDd~l~~G~~il  149 (213)
T KOG3251|consen   77 DVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTSIPFDEELQEN-------DSLKRSHNMLDDLLESGSAIL  149 (213)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHhh-------hHHHHHHhhHHHHHHHHHHHH
Confidence            99999999988876653    2346888988877654222222255566555       566899999999999999999


Q ss_pred             HHHHHhhHHHHhhhhccccccc
Q 028804          156 QDLHQQRQSLLHAHNTVCPSSS  177 (203)
Q Consensus       156 ~~L~~QRe~L~~~~~~l~~~d~  177 (203)
                      ++|..||-.|.++++++.++-+
T Consensus       150 e~l~~Q~~~L~~~~~ki~~~~n  171 (213)
T KOG3251|consen  150 ENLVEQRLTLKGTQKKILDILN  171 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888765

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.07  E-value=2e-10  Score=77.18  Aligned_cols=55  Identities=31%  Similarity=0.417  Sum_probs=50.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804          128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY  182 (203)
Q Consensus       128 ~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~  182 (203)
                      +.|.+++.+|.+|++++.||+++|.+|+.+|..||++|.+++++|.++++++...
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s   55 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKS   55 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3567788899999999999999999999999999999999999999999988743

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.4e-08  Score=82.26  Aligned_cols=189  Identities=24%  Similarity=0.232  Sum_probs=131.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhc---------------CChH--HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 028804            1 MSQVFEGYERQYCELSAGLSRKCTAASA---------------LDGE--LKKQKLSEIKTGLDDADALIRKMDLEARSLQ   63 (203)
Q Consensus         1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~---------------~~~~--~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p   63 (203)
                      |++-|+....+-..+=.++..+|..+..               ..+.  .-+..-.+|+..|++..++.++|.- +-..|
T Consensus         3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~   81 (231)
T KOG3208|consen    3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSP   81 (231)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCC
Confidence            4567888888888888888887765521               1121  2245678899999999999999988 44445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCc-c---cccHHHHHHHHhhhhhhhhhHHHHHH
Q 028804           64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADA-M---MVSADQRGRLLMSTERLNHSTDRIKE  139 (203)
Q Consensus        64 ~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~-~---~~~~~~r~~ll~~~~~L~~~~~~L~~  139 (203)
                      .+ -...+..++.++.-|.....+|++.........+|..|+++.-.+. .   .+...-++.+++.+       ..|++
T Consensus        82 a~-~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~e~~lkE~-------~~in~  153 (231)
T KOG3208|consen   82 AN-SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRGEMYLKEH-------DHINN  153 (231)
T ss_pred             CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchHHHHHHHh-------ccccc
Confidence            33 3566667777777777777777777665544457888876532221 0   11111235555555       45678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh---hc---------------ccchhhhhhhhhcc
Q 028804          140 SRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY---LG---------------GHGWCYKSLIFTCV  198 (203)
Q Consensus       140 s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~---~~---------------r~~~c~~~~~~~~~  198 (203)
                      +.++++|...++.++.++|..||..+.++..+|.++..-++..   +.               =++-|++.||||.+
T Consensus       154 s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~  230 (231)
T KOG3208|consen  154 SIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWI  230 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999998744421   11               12559999999864

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.00035  Score=59.36  Aligned_cols=83  Identities=16%  Similarity=0.040  Sum_probs=62.9

Q ss_pred             HHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccchhhhhhhhhc
Q 028804          119 QRGRLLM-STERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTC  197 (203)
Q Consensus       119 ~r~~ll~-~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~~c~~~~~~~~  197 (203)
                      ..+.|.+ .......+..+..++..++.|++..|..++..|..|+|+|.+|+..|+.++..+++- .|+..-+..+-=.|
T Consensus        62 ~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~-er~l~~l~~~~g~~  140 (273)
T KOG3065|consen   62 EVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRA-ERNLTELKGLFGLL  140 (273)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHH-HHHHHHHHHHhccc
Confidence            3344443 333445777888899999999999999999999999999999999999999988865 44422222222288


Q ss_pred             ccCCC
Q 028804          198 VAPWG  202 (203)
Q Consensus       198 ~~~~~  202 (203)
                      +-||.
T Consensus       141 ~~p~~  145 (273)
T KOG3065|consen  141 VKPFK  145 (273)
T ss_pred             CCccc
Confidence            88986

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.029  Score=46.79  Aligned_cols=192  Identities=16%  Similarity=0.173  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhh----c-CC-hHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 028804            4 VFEGYERQYCELSAGLSRKCTAAS----A-LD-GELKKQKLS-EIKTGLDDADALIRKMDLEARSL--QPNVKAMLLSKL   74 (203)
Q Consensus         4 ~fe~ye~e~~~l~~~i~~~l~~l~----~-~~-~~~r~~~i~-~i~~~l~ea~~~l~qme~Ev~~~--p~~~r~~~~~kv   74 (203)
                      .|.-|. +...+.+.++..+....    . .+ .++....++ .++..++..++.+.-++--....  |.-+-..=...+
T Consensus         8 ~~~v~~-e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~~i   86 (235)
T KOG3202|consen    8 FFRVKN-ETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRRFI   86 (235)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHHHH
Confidence            455555 78888888888876553    2 12 223444555 66666666666555554433332  222233333456


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCC---c----ccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 028804           75 REYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMAD---A----MMVSADQRGRLLMSTERLNHSTDRIKESRRTMLET  147 (203)
Q Consensus        75 ~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~---~----~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Et  147 (203)
                      .+.+..+..++..+......  +...|+.|++....+   .    .+..+.-.......+..++.....|......+.-.
T Consensus        87 ~~lr~q~~~~~~~~~~~~~~--~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rl  164 (235)
T KOG3202|consen   87 DNLRTQLRQMKSKMAMSGFA--NSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRL  164 (235)
T ss_pred             HHHHHHHHHHHHHHHhhccc--cccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666777777777662211  112477777532111   1    01111111111223455667778888888888888


Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhhccccccchhH--------Hhh---cccchhhhhhhhhcc
Q 028804          148 EELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV--------VYL---GGHGWCYKSLIFTCV  198 (203)
Q Consensus       148 e~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~--------~~~---~r~~~c~~~~~~~~~  198 (203)
                      -.+|..|-++|..|..-|..-...++.|++-+.        |+-   ++..||.+.++|..+
T Consensus       165 k~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~  226 (235)
T KOG3202|consen  165 KGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLL  226 (235)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence            999999999999999999987777777766333        221   233678777766543

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=97.01  E-value=0.0012  Score=47.00  Aligned_cols=49  Identities=22%  Similarity=0.279  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804          132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV  180 (203)
Q Consensus       132 ~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~  180 (203)
                      ..+..|.++++.+.+.-+-|...++.|..|.++|..+++.+.+.++.+.
T Consensus         5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~   53 (92)
T PF03908_consen    5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLK   53 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999988665

>smart00397 t_SNARE Helical region found in SNAREs

Probab=96.23  E-value=0.016  Score=37.64  Aligned_cols=56  Identities=9%  Similarity=0.106  Sum_probs=50.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhh
Q 028804          128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYL  183 (203)
Q Consensus       128 ~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~  183 (203)
                      ..+......|.+....+.++.++|..|...+..|.+.|.++...+..++.+++.-.
T Consensus         5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~   60 (66)
T smart00397        5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN   60 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45666778899999999999999999999999999999999999999998887543

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=94.59  E-value=1.4  Score=36.99  Aligned_cols=44  Identities=5%  Similarity=0.081  Sum_probs=30.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 028804           40 EIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN   83 (203)
Q Consensus        40 ~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~   83 (203)
                      .++..+..++++|.+++.+....++..=.+|..||..++.-+..
T Consensus        28 rl~~yv~~L~~~l~~L~~~~~~~s~e~l~eY~~ri~~Lk~l~~~   71 (251)
T PF09753_consen   28 RLEKYVETLREMLEELEESLSKPSKEVLNEYSERIDFLKGLIEA   71 (251)
T ss_pred             hHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            46777888888888888886655555556777777776655543

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=2  Score=35.17  Aligned_cols=124  Identities=19%  Similarity=0.172  Sum_probs=77.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccHHHH
Q 028804           41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR  120 (203)
Q Consensus        41 i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~~~r  120 (203)
                      +..+|.+.+.-++++..|++..| +.+....        +.+.+-..+.. .........|..|+.+            -
T Consensus        70 ~~~KlR~yksdl~~l~~e~k~~~-~~~~~~~--------~rde~~~~~~a-dd~~~~~dQR~rLl~n------------T  127 (220)
T KOG1666|consen   70 YLSKLREYKSDLKKLKRELKRTT-SRNLNAG--------DRDELLEALEA-DDQNISADQRARLLQN------------T  127 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-ccccccc--------hHHHHHhhhhc-cccccchhHHHHHHhh------------h
Confidence            44566667777777777777666 1111110        00011111100 0000112467777743            2


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804          121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH  186 (203)
Q Consensus       121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~  186 (203)
                      ++|-+.++++..+-+-..++.++..+.-+==..=-+.|.+=|+.|..+.+.|.....-++.++.|.
T Consensus       128 erLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~  193 (220)
T KOG1666|consen  128 ERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRL  193 (220)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHH
Confidence            567778888888888889999988887654455578899999999999999988887777666544

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.18  E-value=3.3  Score=35.60  Aligned_cols=89  Identities=15%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhh---------hcCC-hHHHHH----HHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028804            7 GYERQYCELSAGLSRKCTAA---------SALD-GELKKQ----KLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLS   72 (203)
Q Consensus         7 ~ye~e~~~l~~~i~~~l~~l---------~~~~-~~~r~~----~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~   72 (203)
                      .-.+|....+..|+.+++.+         |+.+ +.+...    +-..|-..|..++..|....--.+..|++++.-..+
T Consensus        61 d~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n  140 (305)
T KOG0809|consen   61 DVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKN  140 (305)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34566777777777777655         4432 111122    223445555666666666655555667777665556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Q 028804           73 KLREYKTDLNNLKNEVKRVTSGN   95 (203)
Q Consensus        73 kv~~yk~~l~~l~~e~~~~~~~~   95 (203)
                      =...|=..+..+..+|+.+++.+
T Consensus       141 ~~~~la~~LQ~~s~~fR~~Qs~Y  163 (305)
T KOG0809|consen  141 AQGYLALQLQTLSREFRGLQSKY  163 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666667777777777766553

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.25  E-value=9.3  Score=32.49  Aligned_cols=137  Identities=16%  Similarity=0.223  Sum_probs=83.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCc--
Q 028804           35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADA--  112 (203)
Q Consensus        35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~--  112 (203)
                      ...+.+++.....+..-|+.|+-.+..+. +.......++.+.+.+++.++.++..+...   ..+|.++|..+.+.-  
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~-~k~~~~~~~i~~~~~eik~l~~eI~~~~~~---I~~r~~~l~~raRAmq~  112 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQ-SKIDELQKEIDQSKAEIKKLQKEIAELKEN---IVERQELLKKRARAMQV  112 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666666554 346778888888888888888888877654   368888886542211  


Q ss_pred             ccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804          113 MMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV  180 (203)
Q Consensus       113 ~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~  180 (203)
                      .+.+..+-+-++. ...+..-..++.-...|+.    --.+|++++......|+.....|.+.-..+.
T Consensus       113 nG~~t~Yidvil~-SkSfsD~IsRvtAi~~iv~----aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~  175 (265)
T COG3883         113 NGTATSYIDVILN-SKSFSDLISRVTAISVIVD----ADKKILEQQKEDKKSLEEKQAALEDKLETLV  175 (265)
T ss_pred             cCChhHHHHHHHc-cCcHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1233344555553 3444444444444444442    2356777777777777776666655544433

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=90.05  E-value=0.91  Score=28.58  Aligned_cols=50  Identities=8%  Similarity=0.072  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhc
Q 028804          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLG  184 (203)
Q Consensus       135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~  184 (203)
                      ..|......+.+...++..|...+..|.+.|.++...+..+...++.-..
T Consensus         6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~   55 (60)
T cd00193           6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANK   55 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678888888999999999999999999999999999999888775443

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=89.39  E-value=1.2  Score=28.78  Aligned_cols=49  Identities=12%  Similarity=0.131  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhh
Q 028804          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYL  183 (203)
Q Consensus       135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~  183 (203)
                      +.|......+.+..+++..|-..+..|.+.|.++.+.+..+...+..-.
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~   52 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGN   52 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHH
Confidence            4567788888899999999999999999999999999999998877543

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.72  E-value=14  Score=31.50  Aligned_cols=50  Identities=12%  Similarity=0.119  Sum_probs=34.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804          131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV  180 (203)
Q Consensus       131 ~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~  180 (203)
                      +.-.+.+.+.++-+.|.++|=.+...=-+.|.+.+..|...|..+..++.
T Consensus       176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nve  225 (269)
T KOG0811|consen  176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVE  225 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence            33444555556666666555555555567899999999999888887555

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=88.43  E-value=22  Score=33.39  Aligned_cols=166  Identities=17%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHH
Q 028804            9 ERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKN   86 (203)
Q Consensus         9 e~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~--~~r~~~~~kv~~yk~~l~~l~~   86 (203)
                      +.++..+-+++...+..|..+.-+.-...+..+...|++   +-..|+-|+..-+.  .....+...+...+.....|..
T Consensus       251 ~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~---lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~  327 (560)
T PF06160_consen  251 EEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQ---LYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE  327 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555554444444444444444433   33445555553321  2233444555555555555555


Q ss_pred             HHHHHhccCC---ChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 028804           87 EVKRVTSGNV---NQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQ  163 (203)
Q Consensus        87 e~~~~~~~~~---~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe  163 (203)
                      ++..++.+..   ...++-.-+......-........+.+-.+...-..-...+......+.+.+.-=..+.+.|..=|.
T Consensus       328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~  407 (560)
T PF06160_consen  328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK  407 (560)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555544431   0001111111000000000001111111122222222344445555555555555555556665555


Q ss_pred             HHHhhhhccccccc
Q 028804          164 SLLHAHNTVCPSSS  177 (203)
Q Consensus       164 ~L~~~~~~l~~~d~  177 (203)
                      .=..|+.+|.....
T Consensus       408 dE~~Ar~~l~~~~~  421 (560)
T PF06160_consen  408 DEKEAREKLQKLKQ  421 (560)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55566666665554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=87.92  E-value=15  Score=30.84  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=23.6

Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804          119 QRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLH  159 (203)
Q Consensus       119 ~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~  159 (203)
                      -++.|-+....|...-..|++|...+.+++.+=..+-..|.
T Consensus       183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~  223 (264)
T PF06008_consen  183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLE  223 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666666666666666666666655554444443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=85.00  E-value=4.5  Score=26.40  Aligned_cols=62  Identities=24%  Similarity=0.173  Sum_probs=44.7

Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804          121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY  182 (203)
Q Consensus       121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~  182 (203)
                      ++|++.++.|+++...+.++..++.+|-.-=..=-+.|..=+.++..+...|..++..|+..
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I   62 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRI   62 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            35677777888888888888888877766545555677777778888877777777666544

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=84.81  E-value=28  Score=33.10  Aligned_cols=61  Identities=16%  Similarity=0.241  Sum_probs=40.8

Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccchh
Q 028804          121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWC  189 (203)
Q Consensus       121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~~c  189 (203)
                      .+|....+++.+...+-.=++||.        .|..|++.|++-|.++-...+.+...|-...||..++
T Consensus       471 ~qL~~e~e~~~k~~~Rs~Yt~RIl--------EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt  531 (594)
T PF05667_consen  471 KQLVKELEKLPKDVNRSAYTRRIL--------EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT  531 (594)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444555555544444555554        6778899999999998888888887777776665443

>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family

Probab=84.75  E-value=5.1  Score=24.07  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHH
Q 028804            6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDD   47 (203)
Q Consensus         6 e~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~e   47 (203)
                      +.|..-|...+.+|.+-|...++.++.-+..++..+...+.+
T Consensus         1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~~   42 (43)
T PF07527_consen    1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLNQ   42 (43)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhcC
Confidence            478999999999999999999887777777888877766554

HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=83.84  E-value=56  Score=33.68  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=11.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Q 028804            3 QVFEGYERQYCELSAGLSRKCT   24 (203)
Q Consensus         3 ~~fe~ye~e~~~l~~~i~~~l~   24 (203)
                      +.+.+.+..|......+.....
T Consensus       373 ~~~~di~~ky~~~~~~l~~~~~  394 (1201)
T PF12128_consen  373 SKHQDIESKYNKLKQKLEEAFN  394 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555544

>smart00511 ORANGE Orange domain

Probab=82.22  E-value=4.3  Score=24.56  Aligned_cols=43  Identities=21%  Similarity=0.338  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHH
Q 028804            6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDA   48 (203)
Q Consensus         6 e~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea   48 (203)
                      ++|..-|...+.++.+-|...+..+++.+..++..+...+.+.
T Consensus         1 ~~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~~   43 (45)
T smart00511        1 SSFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQL   43 (45)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Confidence            3688899999999999999998877778888888887665543

This domain confers specificity among members of the Hairy/E(SPL) family.

>TIGR00255 conserved hypothetical protein TIGR00255

Probab=81.20  E-value=35  Score=29.43  Aligned_cols=147  Identities=12%  Similarity=0.123  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHH--HHHHHHHH
Q 028804           13 CELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYK-TDL--NNLKNEVK   89 (203)
Q Consensus        13 ~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk-~~l--~~l~~e~~   89 (203)
                      ..+..-+...|..+......+-..+..++...++..+.++.+++--+...+...|..+..|+..+- ..+  ..+..++-
T Consensus       131 ~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qEva  210 (291)
T TIGR00255       131 ALILGALEEALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQEAA  210 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            466677777777776555556677888999999999999999988888888888899999988875 122  23555543


Q ss_pred             HHhccCC--ChHhh--------HHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804           90 RVTSGNV--NQAAR--------DELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLH  159 (203)
Q Consensus        90 ~~~~~~~--~~~~R--------~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~  159 (203)
                      -...+..  ++-.|        .+++..+     ++-..--+-|+|.-.+=-+|    -.|+-.-.+.-..+.++-..|.
T Consensus       211 l~adK~DI~EEl~RL~sHl~~f~~~L~~~-----~~vGrkLDFL~QEmnRE~NT----igSKs~d~~is~~vVe~K~eiE  281 (291)
T TIGR00255       211 LLAQRIDIAEEIDRLDSHVKEFYNILKKG-----EAVGRKLDFMMQELNRESNT----LASKAIDADITNLAVEMKVLIE  281 (291)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHhcC-----CCcCcchhHHHHHHhHHHHH----HHHccCcHHHHHHHHHHHHHHH
Confidence            3322211  11111        1122211     11112223333321111111    2455566677888889999999


Q ss_pred             HhhHHHHhh
Q 028804          160 QQRQSLLHA  168 (203)
Q Consensus       160 ~QRe~L~~~  168 (203)
                      .=|||++++
T Consensus       282 kiREQVQNI  290 (291)
T TIGR00255       282 KIKEQIQNI  290 (291)
T ss_pred             HHHHHHhcC
Confidence            999999875

The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=80.88  E-value=32  Score=28.83  Aligned_cols=52  Identities=15%  Similarity=0.336  Sum_probs=27.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804           41 IKTGLDDADALIRKMDLEARSLQ---PNVKAMLLSKLREYKTDLNNLKNEVKRVT   92 (203)
Q Consensus        41 i~~~l~ea~~~l~qme~Ev~~~p---~~~r~~~~~kv~~yk~~l~~l~~e~~~~~   92 (203)
                      ++..+.+|+.+|..+.-++...-   ..-...+...+.+|...|..++.-+..+.
T Consensus       151 Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~  205 (264)
T PF06008_consen  151 AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQ  205 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555543221   11134456666666666666666665554

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK11820 hypothetical protein; Provisional

Probab=80.67  E-value=36  Score=29.28  Aligned_cols=147  Identities=19%  Similarity=0.213  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 028804           13 CELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLN--NLKNEVKR   90 (203)
Q Consensus        13 ~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~--~l~~e~~~   90 (203)
                      ..+..-+...|..+......+-..+..++...++..+.++..++-.+...+...|..+..|+..+-..++  .|..|+--
T Consensus       129 ~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEval  208 (288)
T PRK11820        129 AALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLEQEVAL  208 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            4555666666666655444555678888999999999999999888888888888888888888742222  23333322


Q ss_pred             HhccCC--ChHhh--------HHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804           91 VTSGNV--NQAAR--------DELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQ  160 (203)
Q Consensus        91 ~~~~~~--~~~~R--------~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~  160 (203)
                      ...+..  ++-.|        .+++..+     ++-..--+-|+|.-.+=-+|    -.|+-.-.+.-+++.++-..|..
T Consensus       209 ~adK~DI~EEi~RL~sHl~~f~~~L~~~-----~~vGrkLDFL~QEm~RE~NT----igSKs~~~~is~~vVe~K~elEk  279 (288)
T PRK11820        209 LAQKADIAEELDRLKSHLKEFREILKKG-----GPVGRKLDFLMQELNREANT----LGSKSNDAEITNLVVELKVLIEQ  279 (288)
T ss_pred             HHHHcchHHHHHHHHHHHHHHHHHHhcC-----CCCCcchhHHHHHHhHHHHH----HHHccCcHHHHHHHHHHHHHHHH
Confidence            221110  00011        1122111     11112223333321111111    24555666777888888899999


Q ss_pred             hhHHHHhh
Q 028804          161 QRQSLLHA  168 (203)
Q Consensus       161 QRe~L~~~  168 (203)
                      =|||++++
T Consensus       280 iREQVQNI  287 (288)
T PRK11820        280 MREQVQNI  287 (288)
T ss_pred             HHHHHhcC
Confidence            99998875

>PRK15374 pathogenicity island 1 effector protein SipB; Provisional

Probab=80.34  E-value=52  Score=30.92  Aligned_cols=77  Identities=13%  Similarity=0.064  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHH
Q 028804            5 FEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLN   82 (203)
Q Consensus         5 fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~--~~r~~~~~kv~~yk~~l~   82 (203)
                      |..+-++|+..+...+..-+.+...     ..-...++..+++|+..|+.++..+....|  ..-.+.+..+.+-+.++.
T Consensus       122 ~~~lS~~ledaL~aaq~~ad~l~q~-----~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~l~~a~~av~~a~~~a~  196 (593)
T PRK15374        122 GIQVSKEFQTALGEAQEATDLYEAS-----IKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEAT  196 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHH
Confidence            4444555555555555554444321     112445777888888888888777776532  123333444444444444


Q ss_pred             HHHH
Q 028804           83 NLKN   86 (203)
Q Consensus        83 ~l~~   86 (203)
                      +...
T Consensus       197 ~a~~  200 (593)
T PRK15374        197 EAKE  200 (593)
T ss_pred             HHHH
Confidence            4443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.29  E-value=27  Score=28.94  Aligned_cols=49  Identities=22%  Similarity=0.264  Sum_probs=21.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhcccccc
Q 028804          128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSS  176 (203)
Q Consensus       128 ~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d  176 (203)
                      ++++.--..|..+...+.+++.-=..+..-|..-...|.++..++..+.
T Consensus        92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E  140 (237)
T PF00261_consen   92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAE  140 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3344444444555555555544444444444444444444444433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4025 consensus Putative apoptosis related protein [Function unknown]

Probab=80.19  E-value=15  Score=29.12  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHH---HHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028804            4 VFEGYERQYCELSAG---LSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD   80 (203)
Q Consensus         4 ~fe~ye~e~~~l~~~---i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~   80 (203)
                      ..+.||++|+.+-..   +...|++||.. =.+|+.-+..|..--..++.+|+-...--+-+|...+..+..+-+++-.=
T Consensus        87 ~v~r~E~~fqeLn~ka~aLk~iLSriPdE-inDR~~FLeTIK~IASaIKkLLd~vN~v~~~~p~t~~~AvE~rKkEFVkY  165 (207)
T KOG4025|consen   87 IVSRYEQDFQELNKKAIALKRILSRIPDE-INDRHAFLETIKLIASAIKKLLDAVNAVYRIVPLTAQPAVEKRKKEFVKY  165 (207)
T ss_pred             hhcCCCccHHHHHHHHHHHHHHHHhCcHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            346688888887654   45567888762 24677766666655566667777777777778877777777776665544


Q ss_pred             HHHHHHHHH
Q 028804           81 LNNLKNEVK   89 (203)
Q Consensus        81 l~~l~~e~~   89 (203)
                      -+++...++
T Consensus       166 SK~FS~TLK  174 (207)
T KOG4025|consen  166 SKRFSNTLK  174 (207)
T ss_pred             HHHHHHHHH
Confidence            444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
1vcs_A	102	Solution Structure Of Rsgi Ruh-009, An N-Terminal D		4e-08

>pdb|1VCS|A Chain A, Solution Structure Of Rsgi Ruh-009, An N-Terminal Domain Of Vti1a [mus Musculus] Length = 102

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 8  YERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVK 67
          YE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R + P  +
Sbjct: 10 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSR 69
Query: 68 AMLLSKLREYKTDLNNLKNEVK--RVTSG 94
           M  +++R YK ++  L+ + K  R+ SG
Sbjct: 70 GMYSNRMRSYKQEMGKLETDFKRSRIASG 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
1vcs_A	102	Vesicle transport through interaction with T- snar	3e-30
2qyw_A	102	Vesicle transport through interaction with T-SNAR	3e-25
2nps_C	81	Vesicle transport through interaction with T- snar	3e-19
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	7e-14
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1 Length = 102

 Score =  106 bits (266), Expect = 3e-30
 Identities = 27/99 (27%), Positives = 52/99 (52%)

Query: 2   SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS 61
               EGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R 
Sbjct: 4   GSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVRE 63

Query: 62  LQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAA 100
           + P  + M  +++R YK ++  L+ + KR    +   + 
Sbjct: 64  IPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASGPSSG 102

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V Length = 102

 Score = 93.6 bits (232), Expect = 3e-25
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 2   SQVFEGYERQYCELSAGLSRKCTAASALDG-ELKKQKLSEIKTGLDDADALIRKMDLEAR 60
           S+ FE     +  L   L           G E KK+ + +      +A+  + +M+ E R
Sbjct: 14  SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELR 73

Query: 61  SLQPNVKAMLLSKLREYKTDLNNLKNEVK 89
                 +  ++SKLR Y+ DL  L  EV+
Sbjct: 74  YAPLTFRNPMMSKLRNYRKDLAKLHREVR 102

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81

 Score = 77.1 bits (190), Expect = 3e-19
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 117 ADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
              R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   +
Sbjct: 1   GSMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERL 56

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 62.9 bits (153), Expect = 7e-14
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
            +N +T  I+ S R   ET+++G  I+++L +QR  L    + +
Sbjct: 3   HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRL 46

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C Length = 97

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 4  VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63
          +   YE  +             A +     +   L  ++   D+   L+ +MD+E  +  
Sbjct: 2  LLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI 61

Query: 64 --PNVKAMLLSKLREYKTDLNNLKNE 87
             + +A   +KLRE+K  + +    
Sbjct: 62 GDASERATYKAKLREWKKTIQSDIKR 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 58/177 (32%)

Query: 55  MDLEARSLQPNVKAMLLSKLREYKTDL--NNLKNEVKRVTSGNVNQAARDELLESGMADA 112
           MD E    Q   K +L      +  +    ++++  K + S    +   D ++ S     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS----KEEIDHIIMSK---- 58

Query: 113 MMVSADQRGRLLM----------------STERLNHS--TDRIK-ESRRTMLETEE---- 149
               A      L                    R+N+      IK E R+  + T      
Sbjct: 59  ---DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 150 -------------LGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY-LGGHGWCYKS 192
                          VS LQ   + RQ+LL         +  +++  + G G   K+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSG---KT 164

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 29/166 (17%)

Query: 19  LSRKCTAASALDGELKKQ-KLSEIKTGLDDADAL--------IRKMDL--EARSLQPNVK 67
            +R       L         L      L   +           R  DL  E  +  P   
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 68  AMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMST 127
           +++   +R+     +N K         +VN      ++ES +    +  A+ R ++    
Sbjct: 331 SIIAESIRDGLATWDNWK---------HVNCDKLTTIIESSLNV--LEPAEYR-KMFDRL 378

Query: 128 ERLNHSTDRIKESRRTML---ETEELGVSILQDLHQQRQSLLHAHN 170
                S   I     +++     +   + ++  LH  + SL+    
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQP 421

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 35/236 (14%), Positives = 68/236 (28%), Gaps = 86/236 (36%)

Query: 33  LKKQKLSEIKTGLDDADALIRKMD-LEAR-----------SLQPNVKAMLLSKLRE---- 76
           L K+++  I    D     +R    L ++            L+ N K  L+S ++     
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQ 104

Query: 77  -------YKTDLNNLKNEVKRVTSGNVN-----QAARDELLE---------SGMAD---- 111
                  Y    + L N+ +     NV+        R  LLE          G+      
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 112 --AMMVSADQR--------------GR------LLMSTERLNHSTD-----RIKESRRTM 144
             A+ V    +                      +L   ++L +  D     R   S    
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 145 LETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV---VYLGGHGWCYKSLIFTC 197
           L    +  + L+ L + +    + +        L+V   V    +   + +   +C
Sbjct: 225 LRIHSI-QAELRRLLKSKP---YEN-------CLLVLLNVQ---NAKAWNAFNLSC 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
2qyw_A	102	Vesicle transport through interaction with T-SNAR	99.91
1vcs_A	102	Vesicle transport through interaction with T- snar	99.9
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	99.89
2nps_C	81	Vesicle transport through interaction with T- snar	99.66
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.47
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	99.18
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	98.78
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	98.32
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	98.31
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	91.03
2c5k_T	95	Syntaxin TLG1, T-snare affecting A late golgi comp	90.12
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	89.19
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	87.58
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	86.73
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	84.44
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	83.09
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	82.78
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.15
4aj5_A	91	SKA1, spindle and kinetochore-associated protein 1	81.02
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	80.17

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=99.91  E-value=7.1e-24  Score=153.70  Aligned_cols=89  Identities=25%  Similarity=0.327  Sum_probs=85.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhcC-ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 028804            1 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT   79 (203)
Q Consensus         1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~-~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~   79 (203)
                      ||++|++||++|+.++++|+.+++.++.. ++++|+..+++++..|+||+++|++|++|++++|++.|..|+.||++||.
T Consensus        13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~   92 (102)
T 2qyw_A           13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK   92 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999876 77999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028804           80 DLNNLKNEVK   89 (203)
Q Consensus        80 ~l~~l~~e~~   89 (203)
                      ++++|+++|+
T Consensus        93 dL~~lk~elk  102 (102)
T 2qyw_A           93 DLAKLHREVR  102 (102)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHhhcC
Confidence            9999999873

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=99.90  E-value=9.2e-24  Score=153.16  Aligned_cols=94  Identities=29%  Similarity=0.534  Sum_probs=90.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028804            1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD   80 (203)
Q Consensus         1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~   80 (203)
                      +|++|++||++|+.++++|+.++..++..+|++|+..|++|+..|+||+++|.+|++|++++|++.|..|+.||++||.+
T Consensus         3 sSelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~d   82 (102)
T 1vcs_A            3 SGSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQE   82 (102)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028804           81 LNNLKNEVKRVTSG   94 (203)
Q Consensus        81 l~~l~~e~~~~~~~   94 (203)
                      +++|+++|+.+...
T Consensus        83 L~~lk~elk~~~~~   96 (102)
T 1vcs_A           83 MGKLETDFKRSRIA   96 (102)
T ss_dssp             HHHHHHHTHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=99.89  E-value=2.3e-22  Score=144.51  Aligned_cols=91  Identities=18%  Similarity=0.294  Sum_probs=88.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH
Q 028804            3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTD   80 (203)
Q Consensus         3 ~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~--p~~~r~~~~~kv~~yk~~   80 (203)
                      ++|++||++|+.++++|+.+|+.+++.+|++|+..++.|+..++||.++|.+|++|++++  |++.|..|+.||++||.+
T Consensus         1 ~lF~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~d   80 (97)
T 3onj_A            1 SLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT   80 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             HHH-HHHHHHHHhc
Q 028804           81 LNN-LKNEVKRVTS   93 (203)
Q Consensus        81 l~~-l~~e~~~~~~   93 (203)
                      +++ |+++|+.+..
T Consensus        81 l~~~lk~~lk~l~d   94 (97)
T 3onj_A           81 IQSDIKRPLQSLVD   94 (97)
T ss_dssp             HHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            999 9999998763

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.66  E-value=4.7e-17  Score=112.90  Aligned_cols=65  Identities=26%  Similarity=0.426  Sum_probs=62.0

Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804          118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY  182 (203)
Q Consensus       118 ~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~  182 (203)
                      +||++||+++++|++++++|.+|++++.|||+||.+|+.+|+.|||+|.+++++|+++|+++...
T Consensus         2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s   66 (81)
T 2nps_C            2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKS   66 (81)
T ss_dssp             TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999988744

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.47  E-value=3.4e-14  Score=94.45  Aligned_cols=55  Identities=24%  Similarity=0.421  Sum_probs=51.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804          128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY  182 (203)
Q Consensus       128 ~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~  182 (203)
                      ++|++++++|.+|+++|.|||+||.+|+.+|+.|||+|.+++++|+++|+++...
T Consensus         2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s   56 (65)
T 1gl2_C            2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKS   56 (65)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHH
Confidence            5799999999999999999999999999999999999999999999999988754

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=99.18  E-value=4.7e-11  Score=82.12  Aligned_cols=62  Identities=11%  Similarity=0.071  Sum_probs=57.1

Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804          121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY  182 (203)
Q Consensus       121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~  182 (203)
                      ......+++++++++++.++.++|.||+++|.+|+.+|..|||+|.+++..|+++++++++.
T Consensus         9 ~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a   70 (79)
T 1n7s_C            9 EMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEA   70 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHH
Confidence            33444788999999999999999999999999999999999999999999999999999865

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=98.78  E-value=5e-09  Score=66.78  Aligned_cols=45  Identities=11%  Similarity=0.157  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804          138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY  182 (203)
Q Consensus       138 ~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~  182 (203)
                      .++.++|.||+++|..|+.+|..|||+|.+++..|+++++++++.
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a   47 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRET   47 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHH
Confidence            689999999999999999999999999999999999999999865

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=98.32  E-value=9.5e-07  Score=60.91  Aligned_cols=57  Identities=14%  Similarity=0.096  Sum_probs=52.5

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804          126 STERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY  182 (203)
Q Consensus       126 ~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~  182 (203)
                      .....+.+..+..++.++|.+++++|..++..|..|+|+|.|++..|+.+++++++.
T Consensus        18 ~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~A   74 (83)
T 1l4a_C           18 CNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDA   74 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567788999999999999999999999999999999999999999999999876

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.31  E-value=8.3e-07  Score=59.28  Aligned_cols=53  Identities=15%  Similarity=0.113  Sum_probs=49.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804          130 LNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY  182 (203)
Q Consensus       130 L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~  182 (203)
                      -+.+..+..++.++|.|++++|..++..|..|+|+|.+++..|+.++.++++.
T Consensus         7 ~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~a   59 (70)
T 3b5n_C            7 KQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVA   59 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788999999999999999999999999999999999999999999876

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=91.03  E-value=0.48  Score=33.66  Aligned_cols=46  Identities=9%  Similarity=0.070  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804          135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV  180 (203)
Q Consensus       135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~  180 (203)
                      +.+.+..+.+.|..++=.+...-...|.+.|.++..++..+..++.
T Consensus        21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~   66 (109)
T 3hd7_B           21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE   66 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3456666777788888888888899999999999999998887665

>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T

Probab=90.12  E-value=3.4  Score=28.54  Aligned_cols=83  Identities=17%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             Cc-hhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CC--HHHHHHHHHH
Q 028804            1 MS-QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS----LQ--PNVKAMLLSK   73 (203)
Q Consensus         1 Ms-~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~----~p--~~~r~~~~~k   73 (203)
                      || +.|.....|....+..+...+..-.+.++   +....+++.-++++.+.|..++--|.-    -|  ...|..+   
T Consensus         3 ~s~DPF~~V~~D~~~ql~~l~~~~~~~~~~~~---~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~---   76 (95)
T 2c5k_T            3 NSEDPFQQVVKDTKEQLNRINNYITRHNTAGD---DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQ---   76 (95)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHTCCC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHH---
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---
Confidence            56 69999999999999999998765422111   123334444444444444444332221    22  2345444   


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028804           74 LREYKTDLNNLKNEVK   89 (203)
Q Consensus        74 v~~yk~~l~~l~~e~~   89 (203)
                      |.+++.++..++.++.
T Consensus        77 v~~l~~~i~~lk~~~~   92 (95)
T 2c5k_T           77 VKNIKQQLDALKLRFD   92 (95)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4455557777776663

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=89.19  E-value=0.57  Score=29.93  Aligned_cols=59  Identities=10%  Similarity=0.099  Sum_probs=47.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccch
Q 028804          130 LNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGW  188 (203)
Q Consensus       130 L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~~  188 (203)
                      +.+..+.|......+...-.+|..|=.+|..|-+.|.+..+.++.+++.++.-..|..+
T Consensus         4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~   62 (65)
T 1gl2_D            4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL   62 (65)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556777888888888999999999999999999999999999999988876665543

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=87.58  E-value=1  Score=28.84  Aligned_cols=53  Identities=6%  Similarity=0.067  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804          134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH  186 (203)
Q Consensus       134 ~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~  186 (203)
                      ...|.....++.-...+|..+-.+|..|-+.|.++..++..++..|+.-.-|.
T Consensus         9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl   61 (64)
T 3b5n_D            9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRL   61 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35567777788888889999999999999999999999999999887655443

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=86.73  E-value=1.1  Score=28.69  Aligned_cols=56  Identities=4%  Similarity=0.029  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccc
Q 028804          132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHG  187 (203)
Q Consensus       132 ~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~  187 (203)
                      +..+.|......+...-.+|..|=.+|..|-+.|.++...+..++..|+.-..|..
T Consensus         7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~   62 (66)
T 1n7s_D            7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT   62 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34456777788888888999999999999999999999999999998887665543

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=84.44  E-value=2  Score=29.13  Aligned_cols=57  Identities=5%  Similarity=0.040  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804          130 LNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH  186 (203)
Q Consensus       130 L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~  186 (203)
                      ..+..+.|......+.....+|..|=.+|..|-+.|.++...++.++..|+.-..|.
T Consensus        24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl   80 (87)
T 1sfc_D           24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA   80 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            334556778888888888999999999999999999999999999999888665554

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=83.09  E-value=11  Score=27.37  Aligned_cols=86  Identities=7%  Similarity=-0.004  Sum_probs=51.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhh---cC----ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---------CHHH
Q 028804            3 QVFEGYERQYCELSAGLSRKCTAAS---AL----DGELKKQKLSEIKTGLDDADALIRKMDLEARSL---------QPNV   66 (203)
Q Consensus         3 ~~fe~ye~e~~~l~~~i~~~l~~l~---~~----~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~---------p~~~   66 (203)
                      +.|-...+|....++.++..+....   ..    +.++-..+-+++...|.+++.-|..++--|.-+         ++.+
T Consensus        27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~E  106 (130)
T 4dnd_A           27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGD  106 (130)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHH
Confidence            5899999999999999998887542   11    112444556677777777777777777666632         2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 028804           67 KAMLLSKLREYKTDLNNLKNEV   88 (203)
Q Consensus        67 r~~~~~kv~~yk~~l~~l~~e~   88 (203)
                      -..=+.-|...+.++..++.++
T Consensus       107 i~~Rr~fV~~~r~~I~~mk~~l  128 (130)
T 4dnd_A          107 LQERKVFVERMREAVQEMKDHM  128 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            2223334445555555555543

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=82.78  E-value=1.1  Score=30.12  Aligned_cols=58  Identities=9%  Similarity=-0.001  Sum_probs=45.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804          129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH  186 (203)
Q Consensus       129 ~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~  186 (203)
                      .+.+..+.|......+...-.+|..|=++|..|-+-|......++.+++-|+.-..|.
T Consensus        13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~   70 (82)
T 2nps_D           13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKL   70 (82)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556678888888889999999999999999999999999999988777555544

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.15  E-value=7.7  Score=34.83  Aligned_cols=25  Identities=4%  Similarity=0.066  Sum_probs=21.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhh
Q 028804            3 QVFEGYERQYCELSAGLSRKCTAAS   27 (203)
Q Consensus         3 ~~fe~ye~e~~~l~~~i~~~l~~l~   27 (203)
                      .++...|.+|...+++|+..+..+.
T Consensus        53 glLdkqErDltkrINELKnqLEdls   77 (562)
T 3ghg_A           53 GLIDEVNQDFTNRINKLKNSLFEYQ   77 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hhHHhhcCcHHHHHHHHHHHHHHHH
Confidence            4678889999999999999988874

>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=81.02  E-value=11  Score=25.73  Aligned_cols=56  Identities=16%  Similarity=0.197  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh--hhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804            3 QVFEGYERQYCELSAGLSRKCT--AASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR   60 (203)
Q Consensus         3 ~~fe~ye~e~~~l~~~i~~~l~--~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~   60 (203)
                      +-+++.-.-++.=+..|.+.+.  .++. .| ..+..++++-..+--..++|..||.||.
T Consensus         4 s~LEdlc~hineKIs~ikk~L~Lr~~gq-dP-~lk~~L~Kig~Ei~~l~eLLn~~E~eV~   61 (91)
T 4aj5_A            4 SDLEQLCSHVNEKIGNIKKTLSLRNCGQ-EP-TLKTVLNKIGDEIIVINELLNKLELEIQ   61 (91)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccc-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555556666666666543  3332 33 4557889999999999999999999997

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=80.17  E-value=2  Score=29.22  Aligned_cols=54  Identities=9%  Similarity=0.071  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804          133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH  186 (203)
Q Consensus       133 ~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~  186 (203)
                      ..+.|.....++...-.+|..|-.+|..|-+.|.++..+++.++..|+.-..|.
T Consensus        28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~   81 (87)
T 1l4a_D           28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKA   81 (87)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777778888889999999999999999999999999999888665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1vcsa1	89	a.47.2.1 (A:8-96) Vesicle transport v-SNARE protei	3e-30

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (262), Expect = 3e-30
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query: 6  EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPN 65
          EGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R + P 
Sbjct: 1  EGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQ 60

Query: 66 VKAMLLSKLREYKTDLNNLKNEVKRV 91
           + M  +++R YK ++  L+ + KR 
Sbjct: 61 SRGMYSNRMRSYKQEMGKLETDFKRS 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	99.87

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.7e-22  Score=139.94  Aligned_cols=87  Identities=31%  Similarity=0.609  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 028804            6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLK   85 (203)
Q Consensus         6 e~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~   85 (203)
                      ++||.+|+.++++|+.+|+.++..+|++|+..+++++..|+||+++|.+|++||+++|++.|..|+.|+++||.++++|+
T Consensus         1 E~YE~~y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk   80 (89)
T d1vcsa1           1 EGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE   80 (89)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028804           86 NEVKRVT   92 (203)
Q Consensus        86 ~e~~~~~   92 (203)
                      ++|++++
T Consensus        81 ~elk~a~   87 (89)
T d1vcsa1          81 TDFKRSR   87 (89)
T ss_dssp             HHTHHHH
T ss_pred             HHHHhhc
Confidence            9999876