Citrus Sinensis ID: 028805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MVSQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccc
Coil and Loop (DISEMBL)
mvsqdalavngefgilegrsvaLVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINElkkqvkptpvtpdgapaetapspvEIKIQQLTEERKELLKGsyrdrhynaGSILLGFGVlesvgggvntylragklfpgphlfaGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Flexible Loop (DISEMBL)
mvsqdalaVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDinelkkqvkptpvtpdgapaetapspveIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Low Complexity Region (SEG)
MVSQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFagaaitvlwalaaalvpaMQKGSETarnlhialnalnillfiWQIPTGIDIVFKVLEFTKWP
Disordered region (IsUnstruct)
******LAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDIN***************************************LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTK**
Disordered Region (DISOPRED)
******L*VNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTI*******************************************LLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Disordered Region (DISEMBL)
MVSQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Disordered Region (DISPRO)
MVS*****VNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKP**************SPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
255638086	272	unknown [Glycine max]	0.990	0.738	0.851	1e-98
449432022	268	PREDICTED: uncharacterized protein LOC10	0.985	0.746	0.84	4e-96
118487789	274	unknown [Populus trichocarpa]	0.990	0.733	0.830	1e-94
388494298	273	unknown [Lotus japonicus]	0.985	0.732	0.82	1e-94
224127995	199	predicted protein [Populus trichocarpa]	0.980	1.0	0.839	1e-93
357512589	265	hypothetical protein MTR_7g117970 [Medic	0.990	0.758	0.801	2e-92
255585259	270	conserved hypothetical protein [Ricinus	0.990	0.744	0.810	2e-91
217073364	265	unknown [Medicago truncatula] gi|3885046	0.990	0.758	0.792	3e-91
356573253	277	PREDICTED: uncharacterized protein LOC10	0.990	0.725	0.851	1e-90
297817520	271	hypothetical protein ARALYDRAFT_486691 [	0.985	0.738	0.788	3e-88

>gi|255638086|gb|ACU19357.1| unknown [Glycine max]

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 172/202 (85%), Positives = 189/202 (93%), Gaps = 1/202 (0%)

Query: 3   SQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQ 62
           ++DALAV GEFGILEGRS AL+HPIVMGS  +YTLWAGYLGWQWRRVRTIQ DIN+LKKQ
Sbjct: 71  TKDALAVGGEFGILEGRSFALIHPIVMGSFFLYTLWAGYLGWQWRRVRTIQNDINDLKKQ 130

Query: 63  VKPTPVTPDGAPAETA-PSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESV 121
           VKPTPVTPDG P E A PSPVE++IQQLTEERKEL+KGSY+DRH+NAGSILLGFGVLES+
Sbjct: 131 VKPTPVTPDGKPVEEASPSPVELQIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESI 190

Query: 122 GGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILL 181
           GGGVNT+ R GKLFPGPHLFAGAAITVLWALAAALVP+MQKG+ETARNLHIALNA+N+LL
Sbjct: 191 GGGVNTWFRTGKLFPGPHLFAGAAITVLWALAAALVPSMQKGNETARNLHIALNAVNVLL 250

Query: 182 FIWQIPTGIDIVFKVLEFTKWP 203
           F+WQIPTGIDIVFKV EFT WP
Sbjct: 251 FVWQIPTGIDIVFKVFEFTTWP 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432022|ref|XP_004133799.1| PREDICTED: uncharacterized protein LOC101206421 [Cucumis sativus] gi|449477966|ref|XP_004155178.1| PREDICTED: uncharacterized LOC101206421 [Cucumis sativus]

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 168/200 (84%), Positives = 181/200 (90%)

Query: 4   QDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQV 63
           QDALAV GEFGILEGRS AL+HP+VMG L VYTLWAGYLGWQWRRVRT+Q +INELKKQV
Sbjct: 69  QDALAVGGEFGILEGRSFALIHPLVMGGLFVYTLWAGYLGWQWRRVRTVQNEINELKKQV 128

Query: 64  KPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGG 123
            P  VTPDG P E  PSP E+KIQQLTEERKEL+KGS+RDRH+NAGSILLGFGVLE++GG
Sbjct: 129 APAAVTPDGKPVEAPPSPTELKIQQLTEERKELIKGSFRDRHFNAGSILLGFGVLEAIGG 188

Query: 124 GVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFI 183
           GVNT+ R GKLFPGPHLFAGA ITVLWALAAALVPAMQKG+ETARNLHIALN LN+LLFI
Sbjct: 189 GVNTWFRTGKLFPGPHLFAGAGITVLWALAAALVPAMQKGNETARNLHIALNTLNVLLFI 248

Query: 184 WQIPTGIDIVFKVLEFTKWP 203
           WQIPTGIDIV KV EFTKWP
Sbjct: 249 WQIPTGIDIVLKVFEFTKWP 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487789|gb|ABK95718.1| unknown [Populus trichocarpa]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 167/201 (83%), Positives = 187/201 (93%)

Query: 3   SQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQ 62
           ++DALAV GEFGILEGRS AL+HPIVMG LL YTLWAGYLGWQWRRVRT Q +I+ELK+Q
Sbjct: 74  TKDALAVGGEFGILEGRSFALIHPIVMGGLLFYTLWAGYLGWQWRRVRTTQNEISELKRQ 133

Query: 63  VKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVG 122
           VKPTPVTP+G P E APSPVE+KIQQL+EERKEL+KGSYRDRH+NAGSILLGFGV E++G
Sbjct: 134 VKPTPVTPEGTPVEAAPSPVELKIQQLSEERKELIKGSYRDRHFNAGSILLGFGVFEAIG 193

Query: 123 GGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLF 182
           GGVNT+LR GKLFPGPHLFAGA ITVLWA AAALVPAMQKG+ETAR+LHIALNA+N++LF
Sbjct: 194 GGVNTWLRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETARSLHIALNAINVVLF 253

Query: 183 IWQIPTGIDIVFKVLEFTKWP 203
           +WQIPTGIDIVFKV EFTKWP
Sbjct: 254 LWQIPTGIDIVFKVFEFTKWP 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494298|gb|AFK35215.1| unknown [Lotus japonicus]

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 183/200 (91%)

Query: 4   QDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQV 63
           +DALAV GEFGILEGR+ AL+HPIV+G L  YTL+AGYLGWQWRRVRT Q +INELKKQ+
Sbjct: 74  KDALAVGGEFGILEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTTQNEINELKKQI 133

Query: 64  KPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGG 123
           KP PVTPDG P ETAPSPVE+KIQQLTEERKEL+KGSYR++H+NAGSILLGFGV E+VGG
Sbjct: 134 KPAPVTPDGKPVETAPSPVELKIQQLTEERKELIKGSYREKHFNAGSILLGFGVFEAVGG 193

Query: 124 GVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFI 183
           G++T+LR GKLFPGPHLFAGA ITVLWALAAALVP MQKGSETARNLHIALN LN+LLFI
Sbjct: 194 GLDTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLLFI 253

Query: 184 WQIPTGIDIVFKVLEFTKWP 203
           WQIPTG++IV KV EFTKWP
Sbjct: 254 WQIPTGLEIVLKVFEFTKWP 273

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127995|ref|XP_002320215.1| predicted protein [Populus trichocarpa] gi|222860988|gb|EEE98530.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/199 (83%), Positives = 185/199 (92%)

Query: 5   DALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVK 64
           DALAV GEFGILEGRS AL+HPIVMG LL YTLWAGYLGWQWRRVRT Q +I+ELK+QVK
Sbjct: 1   DALAVGGEFGILEGRSFALIHPIVMGGLLFYTLWAGYLGWQWRRVRTTQNEISELKRQVK 60

Query: 65  PTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGG 124
           PTPVTP+G P E APSPVE+KIQQL+EERKEL+KGSYRDRH+NAGSILLGFGV E++GGG
Sbjct: 61  PTPVTPEGTPVEAAPSPVELKIQQLSEERKELIKGSYRDRHFNAGSILLGFGVFEAIGGG 120

Query: 125 VNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIW 184
           VNT+LR GKLFPGPHLFAGA ITVLWA AAALVPAMQKG+ETAR+LHIALNA+N++LF+W
Sbjct: 121 VNTWLRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETARSLHIALNAINVVLFLW 180

Query: 185 QIPTGIDIVFKVLEFTKWP 203
           QIPTGIDIVFKV EFTKWP
Sbjct: 181 QIPTGIDIVFKVFEFTKWP 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512589|ref|XP_003626583.1| hypothetical protein MTR_7g117970 [Medicago truncatula] gi|355501598|gb|AES82801.1| hypothetical protein MTR_7g117970 [Medicago truncatula]

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 162/202 (80%), Positives = 183/202 (90%), Gaps = 1/202 (0%)

Query: 3   SQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQ 62
           ++DALA  GEFGI EGR+ AL+HPIV+G L  YTL+AGYLGWQWRRVRTIQ DINELKKQ
Sbjct: 64  TKDALAAGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTIQNDINELKKQ 123

Query: 63  VKPTPVTPDGAPAETAP-SPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESV 121
           +KP PVTPDG   ET+P SPVE++IQ+LTEERKEL+KGSYRD+H+NAGSILLGFGV E+V
Sbjct: 124 LKPAPVTPDGKALETSPASPVELEIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAV 183

Query: 122 GGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILL 181
           GGG+NT+LR GKLFPGPHLFAGA ITVLWALAAALVP MQKGSETARNLHIALN LN+LL
Sbjct: 184 GGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLL 243

Query: 182 FIWQIPTGIDIVFKVLEFTKWP 203
           F+WQIPTG+DIV+KV EFTKWP
Sbjct: 244 FMWQIPTGLDIVWKVFEFTKWP 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585259|ref|XP_002533330.1| conserved hypothetical protein [Ricinus communis] gi|223526835|gb|EEF29051.1| conserved hypothetical protein [Ricinus communis]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/201 (81%), Positives = 180/201 (89%)

Query: 3   SQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQ 62
           ++DA AV GEFGILEG++ AL+HP VMG L  YTLWAGYLGWQWRRVRTIQ +I+ELKKQ
Sbjct: 70  AKDAFAVGGEFGILEGKTFALIHPAVMGLLFFYTLWAGYLGWQWRRVRTIQNEISELKKQ 129

Query: 63  VKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVG 122
           VKP  VTPDG P E  PSPVE+KIQQLTEERKEL+KGSY+DRH+NAGSILLGFGVLES+G
Sbjct: 130 VKPAAVTPDGKPVEAPPSPVELKIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESIG 189

Query: 123 GGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLF 182
           GG+NT+ R GKLFPGPHLFAGA ITVLWA AAALVPAMQKG+ETARNLHIALNALN+LLF
Sbjct: 190 GGLNTWFRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETARNLHIALNALNVLLF 249

Query: 183 IWQIPTGIDIVFKVLEFTKWP 203
           IWQIPTG +IV KV EFTKWP
Sbjct: 250 IWQIPTGFEIVLKVFEFTKWP 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073364|gb|ACJ85041.1| unknown [Medicago truncatula] gi|388504662|gb|AFK40397.1| unknown [Medicago truncatula]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 182/202 (90%), Gaps = 1/202 (0%)

Query: 3   SQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQ 62
           ++DALA  GEFGI EGR+ AL+HPIV+G L  YTL+AGYLGWQWRRV+TIQ DINELKKQ
Sbjct: 64  TKDALAAGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVKTIQNDINELKKQ 123

Query: 63  VKPTPVTPDGAPAETAP-SPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESV 121
           +KP PVTPDG   ET+P SPVE++IQ+LTEERKEL+KGSYRD+H+NAGSILLGFGV E+V
Sbjct: 124 LKPAPVTPDGKALETSPASPVELEIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAV 183

Query: 122 GGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILL 181
           GGG+NT+LR GKLFPGPHLFAGA ITVLWALAAALVP MQKGSETARNLHIALN L +LL
Sbjct: 184 GGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNLHIALNTLKVLL 243

Query: 182 FIWQIPTGIDIVFKVLEFTKWP 203
           F+WQIPTG+DIV+KV EFTKWP
Sbjct: 244 FMWQIPTGLDIVWKVFEFTKWP 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573253|ref|XP_003554777.1| PREDICTED: uncharacterized protein LOC100798854 [Glycine max]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/202 (85%), Positives = 187/202 (92%), Gaps = 1/202 (0%)

Query: 3   SQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQ 62
           ++DALAV GEFGILEGRS AL+HPIVMGS  +YTLWAGYLGWQWRRVRTIQ DINELKKQ
Sbjct: 76  TKDALAVGGEFGILEGRSFALIHPIVMGSFFLYTLWAGYLGWQWRRVRTIQNDINELKKQ 135

Query: 63  VKPTPVTPDGAPAE-TAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESV 121
           VKP PVTPDG P E  APSPVE++IQQLTEERKEL+KGSY+DRH+NAGSILLGFGVLESV
Sbjct: 136 VKPNPVTPDGKPVEEAAPSPVELQIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESV 195

Query: 122 GGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILL 181
           GGGVNT+ R GKLFPGPHLFAGAAIT LWALAAALVP+MQKG+ETARNLHIALNA+N+LL
Sbjct: 196 GGGVNTWFRTGKLFPGPHLFAGAAITALWALAAALVPSMQKGNETARNLHIALNAVNVLL 255

Query: 182 FIWQIPTGIDIVFKVLEFTKWP 203
           F+WQIPTGIDIVFKV EFT WP
Sbjct: 256 FVWQIPTGIDIVFKVFEFTTWP 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817520|ref|XP_002876643.1| hypothetical protein ARALYDRAFT_486691 [Arabidopsis lyrata subsp. lyrata] gi|297322481|gb|EFH52902.1| hypothetical protein ARALYDRAFT_486691 [Arabidopsis lyrata subsp. lyrata]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/203 (78%), Positives = 182/203 (89%), Gaps = 3/203 (1%)

Query: 4   QDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQV 63
           QDA AV GEFGILEGRS AL+HPIVMG L  YTLWAGYLGWQWRRVRTIQ +I+ELKKQ+
Sbjct: 69  QDAAAVGGEFGILEGRSFALIHPIVMGGLFAYTLWAGYLGWQWRRVRTIQNEISELKKQL 128

Query: 64  KPTPVTPDGAPA---ETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLES 120
           KPTPV+PDG+ A    + PS  E++IQ+LTEERKEL+KGSYRD+H++AGS+LLGFGVLE+
Sbjct: 129 KPTPVSPDGSTAVDSSSPPSTTELQIQRLTEERKELVKGSYRDKHFDAGSVLLGFGVLEA 188

Query: 121 VGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNIL 180
           V GGVNTYLR GKLFPGPHL+AGA ITVLWA AAALVPAMQKG+ETAR+LHIALNA+N+L
Sbjct: 189 VFGGVNTYLRTGKLFPGPHLYAGAGITVLWAAAAALVPAMQKGNETARSLHIALNAVNVL 248

Query: 181 LFIWQIPTGIDIVFKVLEFTKWP 203
           LFIWQIPTG+DIV KV EFTKWP
Sbjct: 249 LFIWQIPTGLDIVLKVFEFTKWP 271

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2079517	272	AT3G61870 "AT3G61870" [Arabido	0.985	0.735	0.620	2.8e-66

TAIR|locus:2079517 AT3G61870 "AT3G61870" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 126/203 (62%), Positives = 148/203 (72%)

Query:     4 QDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQV 63
             QDA A  GEFGILEGRS AL+HPIVMG L  YTLW GYLGWQWRRVRTIQ++I++LKKQ+
Sbjct:    70 QDAAAAGGEFGILEGRSFALIHPIVMGGLFAYTLWTGYLGWQWRRVRTIQSEISDLKKQL 129

Query:    64 KPTPVTPDGAPA---ETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLES 120
             KPTPV+PDG+ A    + PS  E++IQ+LTEERKEL+KGSYRD+H++AGS+LLGFGVLE+
Sbjct:   130 KPTPVSPDGSTAVDSSSPPSTTELQIQRLTEERKELVKGSYRDKHFDAGSVLLGFGVLEA 189

Query:   121 VGGGVNTYLRAGKLFPGPHLFXXXXXXXXXXXXXXXXXXMQKGSETXXXXXXXXXXXXXX 180
             V GGVNTYLR GKLFPGPHL+                  MQKG++T              
Sbjct:   190 VFGGVNTYLRTGKLFPGPHLYAGAGITVLWAAAAALVPAMQKGNDTARSLHIALNAVNVL 249

Query:   181 XXXWQIPTGIDIVFKVLEFTKWP 203
                WQIPTG+DIV KV EFTKWP
Sbjct:   250 LFIWQIPTGLDIVLKVFEFTKWP 272


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.139   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       168   0.00079  108 3  11 22  0.41    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  149 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.99u 0.08s 18.07t   Elapsed:  00:00:20
  Total cpu time:  17.99u 0.08s 18.07t   Elapsed:  00:00:22
  Start:  Thu May  9 15:01:38 2013   End:  Thu May  9 15:02:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIV.1833.1	SubName- Full=Putative uncharacterized protein; (199 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.605
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.588
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.580
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•	•					0.570
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•	•					0.568
	gw1.V.3086.1	hypothetical protein (287 aa)			•	•					0.559
	eugene3.00160848	hypothetical protein (215 aa)			•	•					0.558
	estExt_fgenesh4_pg.C_LG_VIII1474	SubName- Full=Putative uncharacterized protein; (287 aa)			•	•					0.551
	eugene3.00070178	hypothetical protein (262 aa)			•	•					0.540
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)			•	•					0.536

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam13301	144	pfam13301, DUF4079, Protein of unknown function (D	1e-49

>gnl|CDD|222033 pfam13301, DUF4079, Protein of unknown function (DUF4079)

 Score =  157 bits (400), Expect = 1e-49
 Identities = 74/177 (41%), Positives = 91/177 (51%), Gaps = 37/177 (20%)

Query: 22  ALVHPIVMG-SLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPS 80
            L+HP++MG  +     +A YLGWQ RR R                              
Sbjct: 3   WLIHPVLMGLLVFPVGGYAAYLGWQARRRRL----------------------------- 33

Query: 81  PVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHL 140
                  +    RKEL+KG +R RHY  GS LL   VL  +GG + TY R GKLF  PHL
Sbjct: 34  ------AENPGTRKELVKGKFRLRHYRLGSALLALMVLGLLGGQLGTYRRNGKLFWSPHL 87

Query: 141 FAGAAITVLWALAAALVPAMQKG-SETARNLHIALNALNILLFIWQIPTGIDIVFKV 196
           +AG A+T L A +AALVP +QKG S  AR LHI LN L +LLF WQ  TG  I+ K+
Sbjct: 88  WAGLAVTGLLAFSAALVPEIQKGNSLWARRLHIGLNVLALLLFAWQAITGTRILLKI 144

This is an uncharacterized family of proteins. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	100.0
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	98.58
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	98.46
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	98.37
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	98.21
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	97.91
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	97.87
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	97.84
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	97.72
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	97.7
KOG1619	245	consensus Cytochrome b [Energy production and conv	97.45
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	97.34
PLN02680	232	carbon-monoxide oxygenase	97.13
PLN02810	231	carbon-monoxide oxygenase	97.05
PLN02351	242	cytochromes b561 family protein	96.66
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	93.35
PF01292	182	Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPr	92.77
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	92.52
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	91.41
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	91.25
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	90.75
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	90.29
PF13172	34	PepSY_TM_1: PepSY-associated TM helix	89.32
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	85.09
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	85.08
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	83.88
PF02628	302	COX15-CtaA: Cytochrome oxidase assembly protein; I	82.05
PRK06743	254	flagellar motor protein MotP; Reviewed	81.91
PF13706	37	PepSY_TM_3: PepSY-associated TM helix	80.52

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=100.00  E-value=2e-46  Score=313.52  Aligned_cols=172  Identities=45%  Similarity=0.657  Sum_probs=155.0

Q ss_pred             hhhhhhHHHHHH-HHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhh
Q 028805           21 VALVHPIVMGSL-LVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKG   99 (203)
Q Consensus        21 ~~~~HP~~M~~L-~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK~l~kg   99 (203)
                      ++++||++|+.+ |++++|+.|+|||+|++|+.++.-+.++..++.+ +.++.   +.+..+.+..+.+++++||||+++
T Consensus         2 l~liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~-~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~   77 (175)
T PF13301_consen    2 LALIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVA-VLIAL---AYSIARAIFLILALTGTRKELVKL   77 (175)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhcccccc-chhcc---cchhhHHHHHHHHHHHHHHHHHhh
Confidence            478999999955 9999999999999999999988555555555543 22232   233448999999999999999999


Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCC-hhHHHHHHHHHHHH
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGS-ETARNLHIALNALN  178 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~-~~aR~lHi~LN~ll  178 (203)
                      ++|++|+++|++++++++++++||+.+||.++|++|+|||+|+|+++++||++|++++|+|+++| +++|++|+++|+++
T Consensus        78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~  157 (175)
T PF13301_consen   78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLA  157 (175)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999975 59999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHH
Q 028805          179 ILLFIWQIPTGIDIVFKV  196 (203)
Q Consensus       179 llLFl~QaiTG~~IVqk~  196 (203)
                      ++||+||++||++++|||
T Consensus       158 l~Lf~~q~itG~~ill~i  175 (175)
T PF13301_consen  158 LLLFAWQAITGWRILLKI  175 (175)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999999996

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=98.58  E-value=2.3e-06  Score=66.65  Aligned_cols=91  Identities=22%  Similarity=0.069  Sum_probs=73.7

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc-------CChhHHHHHH
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-------GSETARNLHI  172 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k-------g~~~aR~lHi  172 (203)
                      .....|..+-.+.+.+.++|.+....+.-.+..+-|.+.|-+.|++..+++.++...+-....       .|+..+..|.
T Consensus        33 ~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~  112 (137)
T PF03188_consen   33 WWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHR  112 (137)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHH
Confidence            345789988888888888887777766655555778999999999999999998875544421       3666777899


Q ss_pred             HHHHHHHHHHHHHhhhhH
Q 028805          173 ALNALNILLFIWQIPTGI  190 (203)
Q Consensus       173 ~LN~llllLFl~QaiTG~  190 (203)
                      .+..++.++...++.+|.
T Consensus       113 ~~G~~~~~l~~~~i~~G~  130 (137)
T PF03188_consen  113 WLGYLIYVLAIATIFLGL  130 (137)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999997

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=98.46  E-value=6.6e-06  Score=64.37  Aligned_cols=90  Identities=18%  Similarity=0.011  Sum_probs=74.8

Q ss_pred             hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc-------CChhHHHHHHH
Q 028805          101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-------GSETARNLHIA  173 (203)
Q Consensus       101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k-------g~~~aR~lHi~  173 (203)
                      -..-|..+..+-+.+++.|.+.+..+.-.+..+-|.+.|-+.|++...|++++...+-....       .|..++..|..
T Consensus        33 ~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~  112 (129)
T smart00665       33 WFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRF  112 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence            45889999999888888888888877665555678999999999999999998877655422       26677789999


Q ss_pred             HHHHHHHHHHHHhhhhH
Q 028805          174 LNALNILLFIWQIPTGI  190 (203)
Q Consensus       174 LN~llllLFl~QaiTG~  190 (203)
                      +..+++.|-..++.+|.
T Consensus       113 ~G~~~~~la~~~~~lG~  129 (129)
T smart00665      113 VGLAAFILAIVTIFLGL  129 (129)
T ss_pred             HHHHHHHHHHHHHHccC
Confidence            99999999999999883

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=98.37  E-value=9.9e-06  Score=67.08  Aligned_cols=93  Identities=16%  Similarity=0.053  Sum_probs=76.5

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh------h---cCChhHHHH
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM------Q---KGSETARNL  170 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i------~---kg~~~aR~l  170 (203)
                      .-...|..+-++.+.+.+.|......+-..+..+-|.+.|-+.|++.+.|++++...+-..      .   ++|...+..
T Consensus        56 ~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~  135 (183)
T cd08761          56 TKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKY  135 (183)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHH
Confidence            3457899999988888888877777666555667789999999999999999998885532      1   346778889


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHH
Q 028805          171 HIALNALNILLFIWQIPTGIDI  192 (203)
Q Consensus       171 Hi~LN~llllLFl~QaiTG~~I  192 (203)
                      |..+..+++++-..++.+|.+-
T Consensus       136 H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761         136 HRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999854

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=98.21  E-value=4.4e-05  Score=59.63  Aligned_cols=89  Identities=13%  Similarity=0.001  Sum_probs=73.9

Q ss_pred             hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh--hc-----CChhHHHHHHH
Q 028805          101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QK-----GSETARNLHIA  173 (203)
Q Consensus       101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i--~k-----g~~~aR~lHi~  173 (203)
                      -+.-|.-+..+-+.+.+.|.+.+..+.-.+..+-|.+.|-+.|++.+.|+.++..++-..  .+     .|+..+..|..
T Consensus        35 ~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~  114 (131)
T cd08554          35 LKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRF  114 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            447899999988888888888888777656666789999999999999999998886333  11     15678889999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 028805          174 LNALNILLFIWQIPTG  189 (203)
Q Consensus       174 LN~llllLFl~QaiTG  189 (203)
                      +..+++.+-...+.+|
T Consensus       115 ~G~~~~~la~~t~~~G  130 (131)
T cd08554         115 FGLAIFVLAIATILLG  130 (131)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999887

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=97.91  E-value=0.00041  Score=57.50  Aligned_cols=131  Identities=16%  Similarity=0.056  Sum_probs=95.9

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHH
Q 028805           17 EGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKEL   96 (203)
Q Consensus        17 ~g~~~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK~l   96 (203)
                      +.++....|+++|...|....=.+.+-.+.++.  .+                                           
T Consensus        31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~--~~-------------------------------------------   65 (191)
T cd08760          31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFLL--GD-------------------------------------------   65 (191)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-------------------------------------------
Confidence            356778899999997777766655554433311  00                                           


Q ss_pred             hhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc----CChhHHHHHH
Q 028805           97 LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK----GSETARNLHI  172 (203)
Q Consensus        97 ~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k----g~~~aR~lHi  172 (203)
                       +.++ .-|..+=.+-+.+.+.+.+.|..+. ....+-+.+.|.+.|+++++|++++...+-....    .|+.++..|.
T Consensus        66 -~~~~-~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~  142 (191)
T cd08760          66 -PVWF-YLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHR  142 (191)
T ss_pred             -chhH-HHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHH
Confidence             0133 4798888777777777777777765 2344456899999999999999987766654322    3566788999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHH
Q 028805          173 ALNALNILLFIWQIPTGIDIVFK  195 (203)
Q Consensus       173 ~LN~llllLFl~QaiTG~~IVqk  195 (203)
                      .+..++.+|-..|+.+|....+.
T Consensus       143 ~~G~~~~~l~~v~i~~G~~~~~~  165 (191)
T cd08760         143 WLGRAALILAIVNIFLGLDLAGA  165 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999988764

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=97.87  E-value=0.00053  Score=56.22  Aligned_cols=90  Identities=14%  Similarity=-0.007  Sum_probs=67.4

Q ss_pred             hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh--hcC-----ChhHHHHHHHH
Q 028805          102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QKG-----SETARNLHIAL  174 (203)
Q Consensus       102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i--~kg-----~~~aR~lHi~L  174 (203)
                      +.-|.-+..+.+.+++.|...=..+--.+..+-|+|.|-|.|++.+.|...++..+-.+  .++     |...+..|...
T Consensus        41 k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~  120 (143)
T cd08763          41 KILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFF  120 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHH
Confidence            45888888777766666554333333334445779999999999999999988887433  332     46667799999


Q ss_pred             HHHHHHHHHHHhhhhHH
Q 028805          175 NALNILLFIWQIPTGID  191 (203)
Q Consensus       175 N~llllLFl~QaiTG~~  191 (203)
                      +.+++++-...+.+|..
T Consensus       121 G~~~f~la~~t~~lG~~  137 (143)
T cd08763         121 GRALFLSSVGTSLLGLT  137 (143)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999973

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=97.84  E-value=0.00078  Score=55.33  Aligned_cols=85  Identities=18%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             hHhHHhHHHHHHHHHHHHhhhhhhhhhh----cCCCCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-----ChhHHHH
Q 028805          102 RDRHYNAGSILLGFGVLESVGGGVNTYL----RAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNL  170 (203)
Q Consensus       102 r~~H~~~Gsill~l~vlg~vgG~~~T~~----~~G~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-----~~~aR~l  170 (203)
                      +.-|.-+=.+.+.+.+.    |++..+.    +..+-|+|.|-|.|++.+.|..++...+-  ...++     |...+..
T Consensus        41 k~iH~~l~~la~~~~vv----Gl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~  116 (144)
T cd08766          41 KAVHLTLHLVALVLGIV----GIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPW  116 (144)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            35676655555544444    4444444    33445799999999999999998887773  33443     5666779


Q ss_pred             HHHHHHHHHHHHHHHhhhhH
Q 028805          171 HIALNALNILLFIWQIPTGI  190 (203)
Q Consensus       171 Hi~LN~llllLFl~QaiTG~  190 (203)
                      |...+.+++++-...+.+|.
T Consensus       117 H~~~G~~~~~la~~t~~lGl  136 (144)
T cd08766         117 HVFLGLAIYYLAIATAETGL  136 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=97.72  E-value=0.0013  Score=57.37  Aligned_cols=90  Identities=18%  Similarity=0.090  Sum_probs=66.0

Q ss_pred             hhHhHHhHHHHHHHHHHHHhhhhhhhhhhc--CCCCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-ChhHH----HHH
Q 028805          101 YRDRHYNAGSILLGFGVLESVGGGVNTYLR--AGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-SETAR----NLH  171 (203)
Q Consensus       101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~--~G~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-~~~aR----~lH  171 (203)
                      .+.-|.-+..+.+.+.+.|...-.-+.-.+  .-+-|+|.|-|.|++.+.|..++...+-  ...++ +...|    ..|
T Consensus        57 ~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H  136 (214)
T cd08764          57 LKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLH  136 (214)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHH
Confidence            456899888888777777644322222222  3346799999999999999998887774  23432 33333    699


Q ss_pred             HHHHHHHHHHHHHHhhhhH
Q 028805          172 IALNALNILLFIWQIPTGI  190 (203)
Q Consensus       172 i~LN~llllLFl~QaiTG~  190 (203)
                      ...+.+++++-...+.+|.
T Consensus       137 ~~~Gl~~fvLaiaT~~lGl  155 (214)
T cd08764         137 VFFGLFIFVLAVATALLGI  155 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=97.70  E-value=0.0013  Score=54.82  Aligned_cols=85  Identities=15%  Similarity=0.095  Sum_probs=61.3

Q ss_pred             hHhHHhHHHHHHHHHHHHhhhhhhhhhh----cCCCCCcchhHHHHHHHHHHHHHHHHhhHhhh--c-----CChhHHHH
Q 028805          102 RDRHYNAGSILLGFGVLESVGGGVNTYL----RAGKLFPGPHLFAGAAITVLWALAAALVPAMQ--K-----GSETARNL  170 (203)
Q Consensus       102 r~~H~~~Gsill~l~vlg~vgG~~~T~~----~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~--k-----g~~~aR~l  170 (203)
                      +.-|.-+=.+.+.+.    +.|.+..+.    +..+-|+|.|-|.|++.+.|..+++..+-...  +     .|...+..
T Consensus        48 k~iH~~L~~~a~~~~----i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~  123 (153)
T cd08765          48 KLIHAGLHILAFILA----IISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPL  123 (153)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence            356765444444443    444444433    34557799999999999999999888774333  2     25566679


Q ss_pred             HHHHHHHHHHHHHHHhhhhH
Q 028805          171 HIALNALNILLFIWQIPTGI  190 (203)
Q Consensus       171 Hi~LN~llllLFl~QaiTG~  190 (203)
                      |+..+.++++|-..-+.+|+
T Consensus       124 H~~~G~~i~~Lai~t~~lG~  143 (153)
T cd08765         124 HVYSGLFIFGTVIATALMGI  143 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999996

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=97.45  E-value=0.0024  Score=57.07  Aligned_cols=99  Identities=18%  Similarity=0.125  Sum_probs=74.1

Q ss_pred             hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-----ChhHHHHHHHH
Q 028805          102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL  174 (203)
Q Consensus       102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-----~~~aR~lHi~L  174 (203)
                      |--|--+=++.+.+++.+...=+-+.-..+-+.|+|-|-|.|+..+.|-.++...+-  ...++     |....+.|+.+
T Consensus        89 KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~  168 (245)
T KOG1619|consen   89 KLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFL  168 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHH
Confidence            356877777777777777665555555555567899999999999999888776542  22332     66677799999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhhc
Q 028805          175 NALNILLFIWQIPTGIDIVFKVLEFT  200 (203)
Q Consensus       175 N~llllLFl~QaiTG~~IVqk~l~~~  200 (203)
                      ++.++.+...|+.||.---.++.+++
T Consensus       169 Gl~~f~lai~ta~~Gl~ek~~f~~~~  194 (245)
T KOG1619|consen  169 GLAIFILAIVTALTGLLEKLTFLCFG  194 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999995555566655

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=97.34  E-value=0.0066  Score=51.91  Aligned_cols=84  Identities=14%  Similarity=0.113  Sum_probs=59.4

Q ss_pred             HhHHhHHHHHHHHHHHHhhhhhhhhhhc----CCCCCcchhHHHHHHHHHHHHHHHHhhHh--hhcC-----ChhHHHHH
Q 028805          103 DRHYNAGSILLGFGVLESVGGGVNTYLR----AGKLFPGPHLFAGAAITVLWALAAALVPA--MQKG-----SETARNLH  171 (203)
Q Consensus       103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~----~G~Lf~gpHl~aGL~~v~L~l~Saal~p~--i~kg-----~~~aR~lH  171 (203)
                      .-|.-+=.+.+.+.+.    |+...+-+    .-+-++|-|-|.|++.+.|..++...+-.  ..++     |...+..|
T Consensus        72 ~~H~~L~~~Al~~~vv----Gl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H  147 (179)
T cd08762          72 LLHAGLLLLAFILTVI----GLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIH  147 (179)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHH
Confidence            6676655555544444    44444432    33356899999999999999987765542  2222     44555699


Q ss_pred             HHHHHHHHHHHHHHhhhhH
Q 028805          172 IALNALNILLFIWQIPTGI  190 (203)
Q Consensus       172 i~LN~llllLFl~QaiTG~  190 (203)
                      +..+..+.+|....+.||+
T Consensus       148 ~~~G~~if~Laiat~~lGl  166 (179)
T cd08762         148 VFFGAMILVLSIASCISGI  166 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999996

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=97.13  E-value=0.012  Score=52.22  Aligned_cols=91  Identities=16%  Similarity=0.070  Sum_probs=62.7

Q ss_pred             HhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh--hcC-----ChhHHHHHHHHH
Q 028805          103 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QKG-----SETARNLHIALN  175 (203)
Q Consensus       103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i--~kg-----~~~aR~lHi~LN  175 (203)
                      .-|.-+=.+.+.+.+.|...=.-+--.+..+-|+|.|-|.|++.+.|..++...+-..  .++     |......|...+
T Consensus        81 ~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G  160 (232)
T PLN02680         81 LVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFG  160 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence            5687666666665555553311111112344679999999999999999888776432  332     344456999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHH
Q 028805          176 ALNILLFIWQIPTGIDIVFK  195 (203)
Q Consensus       176 ~llllLFl~QaiTG~~IVqk  195 (203)
                      .++++|....+.+|.  .+|
T Consensus       161 ~~if~LaiaT~~lG~--~Ek  178 (232)
T PLN02680        161 IYIYALAVATATTGI--LEK  178 (232)
T ss_pred             HHHHHHHHHHHHHHH--HHH
Confidence            999999999999997  455

>PLN02810 carbon-monoxide oxygenase

Probab=97.05  E-value=0.026  Score=50.16  Aligned_cols=89  Identities=15%  Similarity=0.102  Sum_probs=59.5

Q ss_pred             hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-----ChhHHHHHHHH
Q 028805          102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL  174 (203)
Q Consensus       102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-----~~~aR~lHi~L  174 (203)
                      |.-|.-+=.+.+.+.+.|...=.-+--.+.-+-++|.|-|.|+..+.|..++...+-  ...++     |......|+..
T Consensus        80 K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~  159 (231)
T PLN02810         80 KLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLF  159 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHH
Confidence            356765554444444443332121111222345689999999999999998877665  33443     33444599999


Q ss_pred             HHHHHHHHHHHhhhhH
Q 028805          175 NALNILLFIWQIPTGI  190 (203)
Q Consensus       175 N~llllLFl~QaiTG~  190 (203)
                      +..+..|....+.+|.
T Consensus       160 Gl~if~LAiata~lGi  175 (231)
T PLN02810        160 GLFVYILAVGNAALGF  175 (231)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999997

>PLN02351 cytochromes b561 family protein

Probab=96.66  E-value=0.052  Score=48.53  Aligned_cols=85  Identities=18%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC---CCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-----ChhHHHHH
Q 028805          102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAG---KLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLH  171 (203)
Q Consensus       102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G---~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-----~~~aR~lH  171 (203)
                      +.-|.-+=.+.+.+.+.|    +..-+-+.+   +-+++-|-|.|++.+.|..++...+-  ...++     |...+..|
T Consensus        84 K~lH~~Lh~~Ali~~vvG----l~a~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~H  159 (242)
T PLN02351         84 KSVHLWLQGLALASGVFG----IWTKFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWH  159 (242)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHH
Confidence            466766555555554444    444443433   34799999999999999988766553  23332     44556699


Q ss_pred             HHHHHHHHHHHHHHhhhhH
Q 028805          172 IALNALNILLFIWQIPTGI  190 (203)
Q Consensus       172 i~LN~llllLFl~QaiTG~  190 (203)
                      +..+..+.+|-..-+.||.
T Consensus       160 v~~Gl~if~LaiaTa~lGl  178 (242)
T PLN02351        160 VFLGLYTYGLAVATAETGL  178 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999996

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=93.35  E-value=0.75  Score=35.61  Aligned_cols=59  Identities=17%  Similarity=0.150  Sum_probs=48.0

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC-----CCcchhHHHHHHHHHHHHHHHHhhH
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALVP  158 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~-----Lf~gpHl~aGL~~v~L~l~Saal~p  158 (203)
                      .+++-|-.+|.+.+.+.++-.+.|...-+....+     .+.-.|-+.|..+..|..++..++-
T Consensus        67 h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~  130 (137)
T PF03188_consen   67 HFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGL  130 (137)
T ss_pred             CCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778999999999999999999999988753322     3434499999999999888877765

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently

Probab=92.77  E-value=1.1  Score=35.67  Aligned_cols=90  Identities=16%  Similarity=0.018  Sum_probs=56.8

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCC--cchhHHHHHHHHHHHHHHHHhh--------------------
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLF--PGPHLFAGAAITVLWALAAALV--------------------  157 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf--~gpHl~aGL~~v~L~l~Saal~--------------------  157 (203)
                      ..|-.|.-.-..++.+.+.|...-........+...  ...|.++|+++.+++++-....                    
T Consensus         5 ~~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (182)
T PF01292_consen    5 FTRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLY   84 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            466778776666666666555443333333333343  5789999999999987766555                    


Q ss_pred             -------HhhhcCChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028805          158 -------PAMQKGSETARNLHIALNALNILLFIWQIPTGIDIV  193 (203)
Q Consensus       158 -------p~i~kg~~~aR~lHi~LN~llllLFl~QaiTG~~IV  193 (203)
                             |.-.+.++..|.    ...++.++.+.+++||+-..
T Consensus        85 ~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~iTG~~~~  123 (182)
T PF01292_consen   85 FLLRGKPPPAGKYNPGQKI----VHWVLYLLLLLLPITGLLLW  123 (182)
T ss_pred             HHhcCCCCCCCcCChHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence                   111222444444    55667888889999998553

This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=92.52  E-value=2  Score=34.00  Aligned_cols=90  Identities=21%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhh------------------hhhcC----CCCCcchhHHHHHHHHHHHHHHHHhh
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVN------------------TYLRA----GKLFPGPHLFAGAAITVLWALAAALV  157 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~------------------T~~~~----G~Lf~gpHl~aGL~~v~L~l~Saal~  157 (203)
                      ..+.-|...|.++++++++-.+-+...                  ...+.    .+-+....-.+-.++..++++...++
T Consensus        45 ~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG  124 (188)
T PF00033_consen   45 LLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITG  124 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999998888877777666                  11110    01112222222222333333333344


Q ss_pred             Hhh--------------h-cCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 028805          158 PAM--------------Q-KGSETARNLHIALNALNILLFIWQIPTG  189 (203)
Q Consensus       158 p~i--------------~-kg~~~aR~lHi~LN~llllLFl~QaiTG  189 (203)
                      -.|              + ....++|.+|.....+++.+++.+++-.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~Hi~~a  171 (188)
T PF00033_consen  125 LIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIHIYAA  171 (188)
T ss_dssp             HHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333              1 1378899999999999999988887643

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=91.41  E-value=1  Score=37.30  Aligned_cols=87  Identities=16%  Similarity=0.045  Sum_probs=64.8

Q ss_pred             hhHhHHhHHHHHHHHHHHHhhhhhhhhhh--cCCCCCcchhHHHHHHHHHHHHHHHHhhHhhh-cCChhHHHHHHHHHHH
Q 028805          101 YRDRHYNAGSILLGFGVLESVGGGVNTYL--RAGKLFPGPHLFAGAAITVLWALAAALVPAMQ-KGSETARNLHIALNAL  177 (203)
Q Consensus       101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~--~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~-kg~~~aR~lHi~LN~l  177 (203)
                      ...-|   |.+|..-+.+..-.|++....  ..++.+.-.|...=+..+++.+++..+.-... .+++..+..|-.+.++
T Consensus        35 ~~~~H---g~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~  111 (191)
T cd08760          35 LIKAH---GVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGII  111 (191)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCcchhhhHH
Confidence            34566   777777676666667766543  34456677898888777777777666655542 4577789999999999


Q ss_pred             HHHHHHHHhhhhH
Q 028805          178 NILLFIWQIPTGI  190 (203)
Q Consensus       178 lllLFl~QaiTG~  190 (203)
                      +++++..|.+.|.
T Consensus       112 ~~~l~~lQ~~~G~  124 (191)
T cd08760         112 VLALAILQPLLGL  124 (191)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999997

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=91.25  E-value=1.5  Score=34.18  Aligned_cols=83  Identities=12%  Similarity=-0.088  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhh--c--CCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcC--ChhHHHHHHHHHHHHHHHH
Q 028805          109 GSILLGFGVLESVGGGVNTYL--R--AGKLFPGPHLFAGAAITVLWALAAALVPAMQKG--SETARNLHIALNALNILLF  182 (203)
Q Consensus       109 Gsill~l~vlg~vgG~~~T~~--~--~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg--~~~aR~lHi~LN~llllLF  182 (203)
                      |.+|..-+++..-.|+.....  +  ..+.+..-|.........+.+++..+.-.....  ++-..+.|..+.++.++|+
T Consensus         3 ~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~   82 (129)
T smart00665        3 PVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLA   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHH
Confidence            344555555555566666653  2  123445789888888777777777766655332  2457789999999999999


Q ss_pred             HHHhhhhHH
Q 028805          183 IWQIPTGID  191 (203)
Q Consensus       183 l~QaiTG~~  191 (203)
                      ..|.+.|.-
T Consensus        83 ~~Q~~~G~~   91 (129)
T smart00665       83 GLQWLSGFL   91 (129)
T ss_pred             HHHHHHHHH
Confidence            999999975

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=90.75  E-value=3.2  Score=34.36  Aligned_cols=61  Identities=20%  Similarity=0.157  Sum_probs=50.0

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhhhhh-------cCCCCCcchhHHHHHHHHHHHHHHHHhhHhh
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVNTYL-------RAGKLFPGPHLFAGAAITVLWALAAALVPAM  160 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~-------~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i  160 (203)
                      .+.+-|-.+|.+.+.+.++-.+.|...-+.       +..+.+...|-+.|..+..|..++..++-+-
T Consensus        90 hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761          90 HFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            578899999999999999999999875542       2334567889999999999998888877644

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=90.29  E-value=2.9  Score=32.47  Aligned_cols=57  Identities=25%  Similarity=0.073  Sum_probs=46.0

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC-----CCCcchhHHHHHHHHHHHHHHHHh
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG-----KLFPGPHLFAGAAITVLWALAAAL  156 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G-----~Lf~gpHl~aGL~~v~L~l~Saal  156 (203)
                      .+...|-.+|.+.+.+.++-.+.|...-+....     +.+...|-+.|.....+...+..+
T Consensus        68 h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~  129 (131)
T cd08554          68 NLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILL  129 (131)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999887544443     355789999999998887776544

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PF13172 PepSY_TM_1: PepSY-associated TM helix

Probab=89.32  E-value=0.77  Score=28.79  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=26.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028805          164 SETARNLHIALNALNILLFIWQIPTGIDIV  193 (203)
Q Consensus       164 ~~~aR~lHi~LN~llllLFl~QaiTG~~IV  193 (203)
                      +.++|.+|..+.....+..+..++||.-++
T Consensus         2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~   31 (34)
T PF13172_consen    2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN   31 (34)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999998543

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=85.09  E-value=14  Score=32.65  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=27.6

Q ss_pred             hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCC
Q 028805          101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKL  134 (203)
Q Consensus       101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~L  134 (203)
                      -|.||..+|+.+++..++.+++|.+..+...+..
T Consensus        11 er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~   44 (301)
T PF14362_consen   11 ERNKYAGIGAAVLFTALLAGLSGGYALYTVFGGP   44 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4578999999999999999888888877765443

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=85.08  E-value=6.9  Score=30.93  Aligned_cols=93  Identities=14%  Similarity=0.003  Sum_probs=53.2

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhh----hhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh---------------
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGG----GVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM---------------  160 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG----~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i---------------  160 (203)
                      ..|--|.-....++.+.+.|....    ..............-|.+.|+++.+++++=....-.=               
T Consensus         7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T PF00033_consen    7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP   86 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence            467889877776666666655543    1112222223346899999999887776533222111               


Q ss_pred             ---------hcCChhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028805          161 ---------QKGSETARNLHIALNALNILLFIWQIPTGIDI  192 (203)
Q Consensus       161 ---------~kg~~~aR~lHi~LN~llllLFl~QaiTG~~I  192 (203)
                               .+...+.....-....++.++.+.+++||+-.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~  127 (188)
T PF00033_consen   87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM  127 (188)
T ss_dssp             HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     01122333344445556677788899999866

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=83.88  E-value=5.8  Score=32.60  Aligned_cols=58  Identities=16%  Similarity=0.034  Sum_probs=45.6

Q ss_pred             hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcC-----CCCCcchhHHHHHHHHHHHHHHHHhh
Q 028805          100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRA-----GKLFPGPHLFAGAAITVLWALAAALV  157 (203)
Q Consensus       100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~-----G~Lf~gpHl~aGL~~v~L~l~Saal~  157 (203)
                      .+...|-.+|.+.+.+..+-.+.|+..=+...     .+.....|-+.|+.+-.|.+.++.++
T Consensus        73 hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG  135 (143)
T cd08763          73 DMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLG  135 (143)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            57799999999999999999999975533222     23446789999999999888777665

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group

Probab=82.05  E-value=19  Score=31.82  Aligned_cols=84  Identities=15%  Similarity=0.050  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcC-CCCCcchhHHHHHHHHHHHHHHHHhhHhhh--cCChhHHHHHHHHHHHHHHHHHHH
Q 028805          109 GSILLGFGVLESVGGGVNTYLRA-GKLFPGPHLFAGAAITVLWALAAALVPAMQ--KGSETARNLHIALNALNILLFIWQ  185 (203)
Q Consensus       109 Gsill~l~vlg~vgG~~~T~~~~-G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~--kg~~~aR~lHi~LN~llllLFl~Q  185 (203)
                      ..+.+.++++-.+.|........ .+.....|+..++++.+++...+.....-.  .++...+.--..+-...+++...|
T Consensus       103 ~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~q  182 (302)
T PF02628_consen  103 ALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIFALLVWLALRARRPEESPRRLPRPRRLRWLAWAALVLVFIQ  182 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhHHHHHHHHHHHHHHH
Confidence            34445555554444555555553 566689999999999988887666555441  111112222223345566678888


Q ss_pred             hhhhHHH
Q 028805          186 IPTGIDI  192 (203)
Q Consensus       186 aiTG~~I  192 (203)
                      .+.|..+
T Consensus       183 i~lGa~v  189 (302)
T PF02628_consen  183 IALGALV  189 (302)
T ss_pred             Hhcccee
Confidence            8888643

Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>PRK06743 flagellar motor protein MotP; Reviewed

Probab=81.91  E-value=17  Score=32.65  Aligned_cols=130  Identities=8%  Similarity=0.082  Sum_probs=68.5

Q ss_pred             cccch----hhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCC----------------CC---
Q 028805           16 LEGRS----VALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTP----------------DG---   72 (203)
Q Consensus        16 ~~g~~----~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~----------------~g---   72 (203)
                      +||-+    .+|+||-.+...+..++-|....+.++...   +-.+.+|+.+.+...++                +|   
T Consensus        16 l~Gg~~~~l~~~~~~~~~lIV~GGt~ga~li~~p~~~i~---~~~k~~~~~f~~~~~~~~~~i~~l~~la~~aRr~GlLa   92 (254)
T PRK06743         16 LGGGGIKAFKNFLDVSSILIVIGGTTATIVVAYRFGEIK---KYTKSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLS   92 (254)
T ss_pred             HcCCChhHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence            45655    677999999999999888888777766443   23344555554332222                22   


Q ss_pred             -C-CCCCCCCh-------------hHHHHH-hhHHHHHHHhhhhhh--HhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCC
Q 028805           73 -A-PAETAPSP-------------VEIKIQ-QLTEERKELLKGSYR--DRHYNAGSILLGFGVLESVGGGVNTYLRAGKL  134 (203)
Q Consensus        73 -~-~~~~~~~~-------------~~~~~~-~~~~~rK~l~kg~~r--~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~L  134 (203)
                       | ..+.++.|             ...+++ .++++.+......-+  .-=..+|.+.=.++++|++.|++.+..+-++ 
T Consensus        93 LE~~~~~~~d~fl~~gl~l~vdg~~~e~i~~~le~~~~~~~~~~~~~~~~l~~~a~~AP~lGllGTVlGLI~~~~~l~~-  171 (254)
T PRK06743         93 LEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMIGTLIGLIIMLQNLQD-  171 (254)
T ss_pred             HHhhccCCccHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccCC-
Confidence             0 01111111             111221 222222211111101  1112567777789999999999999987763 


Q ss_pred             CcchhHHHHHHHHHHHHH
Q 028805          135 FPGPHLFAGAAITVLWAL  152 (203)
Q Consensus       135 f~gpHl~aGL~~v~L~l~  152 (203)
                         |-..++-.-++|+..
T Consensus       172 ---p~~lg~gIa~ALvtT  186 (254)
T PRK06743        172 ---TSQIGTGMAVAMLTT  186 (254)
T ss_pred             ---HHHHHHHHHHHHHHH
Confidence               334444444444433

>PF13706 PepSY_TM_3: PepSY-associated TM helix

Probab=80.52  E-value=4.7  Score=25.86  Aligned_cols=30  Identities=30%  Similarity=0.256  Sum_probs=26.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028805          164 SETARNLHIALNALNILLFIWQIPTGIDIV  193 (203)
Q Consensus       164 ~~~aR~lHi~LN~llllLFl~QaiTG~~IV  193 (203)
                      +++++.+|..+.+++-++++..++||.-.+
T Consensus         1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~~   30 (37)
T PF13706_consen    1 RRILRKLHRWLGLILGLLLFVIFLTGAVMV   30 (37)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            467899999999999999999999996544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 5/30 (16%)

Query: 57 NELKK---QVKPTPVTPDGAPAETAPSPVE 83
            LKK    +K      D APA    + +E
Sbjct: 20 QALKKLQASLKL--YADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00