Citrus Sinensis ID: 028863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MVAAGESHASIRLLPLLKETLSHLFWFNPWPPRNLCHQLPKLSALERSVTVDSSTIHVQCLNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS
Secondary Structure (PSIPRED)
cccccccccccHHHHcHHHHHHHHcccccccccccccccccHHHHHHHccccccccEEEEcccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccccccEEEcccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHcHHHHHHHHcHHEcccccccHHHHHHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvaageshasIRLLPLLKETLShlfwfnpwpprnlchqlpklsalersvtvdsstihvqclnsvvfplgepgprnaplatsppvklLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGllskaeefgvlsaatdpatpgALLTLSLGLlllgpscvylvpedypwEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS
Flexible Loop (DISEMBL)
mvaageshasirLLPLLKETLSHLFWFNPWPPRNLCHQLPKLSALERSVTVDSSTIHVQCLNSVVFPLGEPGPrnaplatsppvkLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAasnlvsnlqkss
Low Complexity Region (SEG)
MVAAGESHASIRLLPLLKETLSHLFWFNPWPPRNLCHQLPKLSALERSVTVDSSTIHVQCLNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDpatpgalltlslgllllgpsCVYLVPEDYPWEvalqgvvalvsvvggsaafaasNLVSNLQKSS
Disordered region (IsUnstruct)
**********IRLLPLLKETLSHLFWFNPWPPRNLCHQLPKLSALERSVTVDSSTIHVQCLNSVVFPLG**************VKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASN*********
Disordered Region (DISOPRED)
***********RLLPLLKETLSHLFWFNPWPPRNLCHQLPK*********************************************LTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQ***
Disordered Region (DISEMBL)
********ASIRLLPLLKETLSHLFWFNPWPPRNLCHQLPKLSALERSVTVDSSTIHVQCLNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS
Disordered Region (DISPRO)
********ASIRLLPLLKETLSHLFWFNPWPPRNLCHQLPKLSALER**TVDSSTIHVQCLNSVVFPLGEP********TSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQ***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAAGESHASIRLLPLLKETLSHLFWFNPWPPRNLCHQLPKLSALERSVTVDSSTIHVQCLNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
255547173	188	conserved hypothetical protein [Ricinus	0.693	0.744	0.892	6e-56
359491758	206	PREDICTED: uncharacterized protein LOC10	0.821	0.805	0.724	1e-54
297734067	160	unnamed protein product [Vitis vinifera]	0.683	0.862	0.876	3e-54
449439329	197	PREDICTED: uncharacterized protein LOC10	0.787	0.807	0.768	2e-51
224130146	194	predicted protein [Populus trichocarpa]	0.698	0.726	0.843	1e-45
357457451	185	hypothetical protein MTR_3g026020 [Medic	0.678	0.740	0.748	4e-45
351726766	214	uncharacterized protein LOC100500269 [Gl	0.683	0.644	0.769	1e-40
116780843	183	unknown [Picea sitchensis]	0.673	0.743	0.704	6e-39
15241507	158	uncharacterized protein [Arabidopsis tha	0.599	0.765	0.785	7e-37
17978981	158	AT5g08050/F13G24_250 [Arabidopsis thalia	0.599	0.765	0.785	8e-37

>gi|255547173|ref|XP_002514644.1| conserved hypothetical protein [Ricinus communis] gi|223546248|gb|EEF47750.1| conserved hypothetical protein [Ricinus communis]

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 131/140 (93%)

Query: 62  NSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKL 121
           NS VFPLGE GPRN+PL TSPP+KLLTRVE+LKLLSKAEKAGLLSAAEKFGLSLS+IEKL
Sbjct: 48  NSTVFPLGEKGPRNSPLVTSPPIKLLTRVEELKLLSKAEKAGLLSAAEKFGLSLSTIEKL 107

Query: 122 GLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVS 181
           GLLSKAEE GVLSAATDP TPGAL +LSLGLLLLGPSCVYLVPEDYPWE+ LQ  VALVS
Sbjct: 108 GLLSKAEELGVLSAATDPGTPGALFSLSLGLLLLGPSCVYLVPEDYPWEIVLQVAVALVS 167

Query: 182 VVGGSAAFAASNLVSNLQKS 201
           VVGGSAAFAASNLVSNLQKS
Sbjct: 168 VVGGSAAFAASNLVSNLQKS 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491758|ref|XP_002265727.2| PREDICTED: uncharacterized protein LOC100243309 [Vitis vinifera]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/174 (72%), Positives = 142/174 (81%), Gaps = 8/174 (4%)

Query: 27  FNPWPPRNLCHQLPKLSALERSVTVDSSTIHVQCLNSVVFPLGEPGPRNAPLATSPPVKL 86
           F+P    ++  Q P L    ++++   +        S VFPLGE GPR++PLAT PP+KL
Sbjct: 39  FSPLLIHSMATQKPTLPPASKTISSRKA--------STVFPLGEKGPRSSPLATPPPIKL 90

Query: 87  LTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALL 146
           LTRVEQLKLL+KAEKAGLLSAAEK+G SLSSIEKLGLLSKAEEFG+LSAATDP TPGALL
Sbjct: 91  LTRVEQLKLLTKAEKAGLLSAAEKYGFSLSSIEKLGLLSKAEEFGILSAATDPGTPGALL 150

Query: 147 TLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQK 200
           +LSL LLLLGPSC +LVPEDYPWEVALQ VVALV VVGGSAAFAASNLVSNLQK
Sbjct: 151 SLSLVLLLLGPSCAFLVPEDYPWEVALQLVVALVCVVGGSAAFAASNLVSNLQK 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734067|emb|CBI15314.3| unnamed protein product [Vitis vinifera]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 121/138 (87%), Positives = 129/138 (93%)

Query: 63  SVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLG 122
           S VFPLGE GPR++PLAT PP+KLLTRVEQLKLL+KAEKAGLLSAAEK+G SLSSIEKLG
Sbjct: 21  STVFPLGEKGPRSSPLATPPPIKLLTRVEQLKLLTKAEKAGLLSAAEKYGFSLSSIEKLG 80

Query: 123 LLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSV 182
           LLSKAEEFG+LSAATDP TPGALL+LSL LLLLGPSC +LVPEDYPWEVALQ VVALV V
Sbjct: 81  LLSKAEEFGILSAATDPGTPGALLSLSLVLLLLGPSCAFLVPEDYPWEVALQLVVALVCV 140

Query: 183 VGGSAAFAASNLVSNLQK 200
           VGGSAAFAASNLVSNLQK
Sbjct: 141 VGGSAAFAASNLVSNLQK 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439329|ref|XP_004137438.1| PREDICTED: uncharacterized protein LOC101204037 [Cucumis sativus] gi|449486926|ref|XP_004157444.1| PREDICTED: uncharacterized protein LOC101227416 [Cucumis sativus]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/160 (76%), Positives = 139/160 (86%), Gaps = 1/160 (0%)

Query: 44  ALERSVTVDSSTIHVQCLNSVVFPLGEPGPRNA-PLATSPPVKLLTRVEQLKLLSKAEKA 102
           A E+ +   + T+  + +N+ VFPLGE GPR++  L+TSPP+KLLTRVEQLKLLSKAEKA
Sbjct: 38  ATEKPLPSAAKTVGSKKINTTVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKA 97

Query: 103 GLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYL 162
           GLLSAAEK GLSLSSIEKLGLLSKAEE GVLSAATDP TPGALL+LSLGLLLLGPSCVYL
Sbjct: 98  GLLSAAEKAGLSLSSIEKLGLLSKAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYL 157

Query: 163 VPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS 202
           VPED  WE+ LQ  VALVS+VGGSAAFAASNLVSNLQ+S+
Sbjct: 158 VPEDSVWEIVLQVAVALVSIVGGSAAFAASNLVSNLQRSN 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130146|ref|XP_002328665.1| predicted protein [Populus trichocarpa] gi|118487258|gb|ABK95457.1| unknown [Populus trichocarpa] gi|118488248|gb|ABK95943.1| unknown [Populus trichocarpa] gi|222838841|gb|EEE77192.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 127/141 (90%)

Query: 62  NSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKL 121
           +S VFP GE GPR+ PLATSPP+KLLTRVEQLKLL+KAEKAGLLSAAEKFGLSLS+IEKL
Sbjct: 54  SSNVFPPGEQGPRSRPLATSPPIKLLTRVEQLKLLTKAEKAGLLSAAEKFGLSLSTIEKL 113

Query: 122 GLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVS 181
           GLLSKAEE GVLSAATDP TPGALL+LSLGLL LGPSC YLVPEDYPWEVALQ  V L+ 
Sbjct: 114 GLLSKAEELGVLSAATDPGTPGALLSLSLGLLFLGPSCAYLVPEDYPWEVALQVAVVLLC 173

Query: 182 VVGGSAAFAASNLVSNLQKSS 202
           V GGSAAFAASN VSNLQKS+
Sbjct: 174 VAGGSAAFAASNFVSNLQKSN 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457451|ref|XP_003599006.1| hypothetical protein MTR_3g026020 [Medicago truncatula] gi|355488054|gb|AES69257.1| hypothetical protein MTR_3g026020 [Medicago truncatula]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/139 (74%), Positives = 116/139 (83%), Gaps = 2/139 (1%)

Query: 62  NSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKL 121
           NS VFPLGE  PR+A + ++  VKLLTR+EQL+LL+KAEKAGLLSAAEK GLSLS+IEKL
Sbjct: 47  NSTVFPLGEK-PRSA-VTSTQSVKLLTRMEQLRLLTKAEKAGLLSAAEKAGLSLSTIEKL 104

Query: 122 GLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVS 181
           GLLSKAEE GVLSAATDP+TPG+L TLS  LLLLGP  VYLVPED   EV LQ VVAL+ 
Sbjct: 105 GLLSKAEELGVLSAATDPSTPGSLFTLSFVLLLLGPLFVYLVPEDNVVEVGLQAVVALIC 164

Query: 182 VVGGSAAFAASNLVSNLQK 200
           VVGGSA FA S+ VSNLQK
Sbjct: 165 VVGGSAGFAGSSFVSNLQK 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726766|ref|NP_001235602.1| uncharacterized protein LOC100500269 [Glycine max] gi|255629883|gb|ACU15292.1| unknown [Glycine max]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/139 (76%), Positives = 116/139 (83%), Gaps = 1/139 (0%)

Query: 62  NSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKL 121
           NS VFPLGE  PR++P   +PP+KLLTR+EQLKLLSKAEKAGLLSAAEKFG SLS+IE+L
Sbjct: 75  NSTVFPLGEQ-PRSSPATATPPIKLLTRMEQLKLLSKAEKAGLLSAAEKFGFSLSTIERL 133

Query: 122 GLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVS 181
           GLLSKAEE GVLSAATDP TP  LLTLSLGLL+LGP  VY VPED    V LQ VVALVS
Sbjct: 134 GLLSKAEELGVLSAATDPGTPRTLLTLSLGLLILGPLFVYFVPEDNLGLVGLQVVVALVS 193

Query: 182 VVGGSAAFAASNLVSNLQK 200
           V+GGSA  AASN VSNLQK
Sbjct: 194 VIGGSAGLAASNFVSNLQK 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116780843|gb|ABK21842.1| unknown [Picea sitchensis]

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 114/142 (80%), Gaps = 6/142 (4%)

Query: 65  VFPLGEPG----PRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEK 120
           VFPLG+      P+N    +S  +KLL+RVEQLKLLSKAEKAGLLSAAEK GLSLS IE 
Sbjct: 44  VFPLGDKSAVLRPKNEFNGSS--IKLLSRVEQLKLLSKAEKAGLLSAAEKSGLSLSKIES 101

Query: 121 LGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALV 180
           LGLLSKAEE G+LS+ATDP TPGALL L++ LL+ GP CVY VP+D  WEVALQ V+AL+
Sbjct: 102 LGLLSKAEELGILSSATDPNTPGALLNLAIALLIAGPLCVYFVPDDSSWEVALQVVIALL 161

Query: 181 SVVGGSAAFAASNLVSNLQKSS 202
           SVVGG AAFA SNLVS LQKS+
Sbjct: 162 SVVGGPAAFAGSNLVSKLQKST 183

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241507|ref|NP_196422.1| uncharacterized protein [Arabidopsis thaliana] gi|6562319|emb|CAB62617.1| putative protein [Arabidopsis thaliana] gi|332003855|gb|AED91238.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 95/121 (78%), Positives = 106/121 (87%)

Query: 81  SPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPA 140
           +P VKLLTRVEQLKLL+KAEKAGLLS AEK G SLS+IE+LGLL+KAEEFGVLSAAT+P 
Sbjct: 37  TPQVKLLTRVEQLKLLTKAEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPE 96

Query: 141 TPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQK 200
           TPG L TLSLGLLLLGP   Y+VPEDY WEV +Q +VAL+SV+GGSAAFAAS  VSNLQK
Sbjct: 97  TPGTLFTLSLGLLLLGPVFAYVVPEDYTWEVVIQVLVALLSVLGGSAAFAASGFVSNLQK 156

Query: 201 S 201
           S
Sbjct: 157 S 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17978981|gb|AAL47451.1| AT5g08050/F13G24_250 [Arabidopsis thaliana] gi|33589718|gb|AAQ22625.1| At5g08050/F13G24_250 [Arabidopsis thaliana]

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/121 (78%), Positives = 106/121 (87%)

Query: 81  SPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPA 140
           +P VKLLTRVEQLKLL+KAEKAGLLS AEK G SLS+IE+LGLL+KAEEFGVLSAAT+P 
Sbjct: 37  TPQVKLLTRVEQLKLLTKAEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPE 96

Query: 141 TPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQK 200
           TPG L TLSLGLLLLGP   Y+VPEDY WEV +Q +VAL+SV+GGSAAFAAS  VSNLQK
Sbjct: 97  TPGTLFTLSLGLLLLGPVFAYVVPEDYTWEVVIQVLVALLSVLGGSAAFAASGFVSNLQK 156

Query: 201 S 201
           S
Sbjct: 157 S 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2142848	158	AT5G08050 "AT5G08050" [Arabido	0.599	0.765	0.520	8.7e-24
TAIR|locus:2027257	198	AT1G74730 "AT1G74730" [Arabido	0.410	0.419	0.376	3.6e-09

TAIR|locus:2142848 AT5G08050 "AT5G08050" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/121 (52%), Positives = 70/121 (57%)

Query:    81 SPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDXX 140
             +P VKLLTRVEQLKLL+KAEKAGLLS AEK G SLS+IE+LGLL+KAEEFGVLSAAT+  
Sbjct:    37 TPQVKLLTRVEQLKLLTKAEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPE 96

Query:   141 XXXXXXXXXXXXXXXXXXCVYLVPEDYPWEXXXXXXXXXXXXXXXXXXXXXXNLVSNLQK 200
                                 Y+VPEDY WE                        VSNLQK
Sbjct:    97 TPGTLFTLSLGLLLLGPVFAYVVPEDYTWEVVIQVLVALLSVLGGSAAFAASGFVSNLQK 156

Query:   201 S 201
             S
Sbjct:   157 S 157

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

TAIR|locus:2027257 AT1G74730 "AT1G74730" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 32/85 (37%), Positives = 46/85 (54%)

Query:    84 VKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDXXXXX 143
             V +  ++E+ K+LS  EK+GLLS AE  GL+LSS+EKL + SKAE+ G+LS   +     
Sbjct:    78 VDVFKKLEKRKVLSNVEKSGLLSKAEGLGLTLSSLEKLKVFSKAEDLGLLSLLENLAGTS 137

Query:   144 XXXXXXXX--XXXXXXXCVYLVPED 166
                               V L+P+D
Sbjct:   138 PAVLASAALPALTAAIVAVVLIPDD 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       160   0.00097  106 3  11 22  0.40    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.20u 0.15s 15.35t   Elapsed:  00:00:00
  Total cpu time:  15.20u 0.16s 15.36t   Elapsed:  00:00:00
  Start:  Thu May  9 18:26:57 2013   End:  Thu May  9 18:26:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000042001 SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (206 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam06549	116	pfam06549, DUF1118, Protein of unknown function (D	1e-40

>gnl|CDD|191553 pfam06549, DUF1118, Protein of unknown function (DUF1118)

 Score =  133 bits (337), Expect = 1e-40
 Identities = 68/115 (59%), Positives = 87/115 (75%), Gaps = 2/115 (1%)

Query: 89  RVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPA--TPGALL 146
            +E+LK+LSK EKAGLLS AE+ GL+LSSIEKLGLLSKAE+ G+LS A + A  +PGAL 
Sbjct: 1   NLEKLKVLSKVEKAGLLSKAEELGLTLSSIEKLGLLSKAEDLGLLSLAENAAGTSPGALA 60

Query: 147 TLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKS 201
           +++L LL+   + V LVP+D  W VA+Q VVAL  VVGGSA F  S ++S LQ+S
Sbjct: 61  SVALPLLVAAIAAVVLVPDDSTWLVAVQAVVALALVVGGSALFVGSVVLSGLQES 115

This family consists of several hypothetical plant proteins of unknown function. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF06549	116	DUF1118: Protein of unknown function (DUF1118); In	100.0
PF06549	116	DUF1118: Protein of unknown function (DUF1118); In	99.62

>PF06549 DUF1118: Protein of unknown function (DUF1118); InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function

Probab=100.00  E-value=1.8e-46  Score=296.23  Aligned_cols=114  Identities=75%  Similarity=1.032  Sum_probs=112.8

Q ss_pred             hHHHhhhhHHHHhhccchHHHHcCCchhhhhhhcchhhhhhhcccccccCCC--ChhhHHHHHHHHHhhccceEEEecCC
Q 028863           89 RVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPA--TPGALLTLSLGLLLLGPSCVYLVPED  166 (202)
Q Consensus        89 kvEk~~LLSkaEkaGLLS~aEklGlSLSkiEkLGLLS~AE~lglLSla~~~~--sP~~L~~laL~llvagpaaVylVPDD  166 (202)
                      |+||+|+|||+||+||||+||++|+|||+|||+|||||||++|+||+++|+.  +|++|+++++++++++|++||+||||
T Consensus         1 ~~Ek~KlLs~~EkaGLLS~AE~~GlsLS~iEkLgLlSkAE~LGlLs~a~~~~~~~P~~L~slaL~ll~ag~~~v~~vPdd   80 (116)
T PF06549_consen    1 RVEKLKLLSKAEKAGLLSKAEKAGLSLSSIEKLGLLSKAEELGLLSLAEDPASSSPGALASLALPLLVAGPAAVYLVPDD   80 (116)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHcCCcHHHHHHhccccchHHhhhhHhccccccCChHHHHHHHHHHHHhhhheEEEecCC
Confidence            6899999999999999999999999999999999999999999999999987  99999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHhhhhhhhhhHHHHhhhhccCC
Q 028863          167 YPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS  202 (202)
Q Consensus       167 s~~~ValQ~vvA~~~vvG~~a~f~gS~~ls~LQ~s~  202 (202)
                      |+|+|++|+|+|++|++|++++|+||+++++|||||
T Consensus        81 s~~~va~Q~vvA~~~~vg~~a~f~gS~~l~~LQ~s~  116 (116)
T PF06549_consen   81 STWLVALQAVVALVCVVGGSAAFAGSSLLSKLQESD  116 (116)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999999999999999999998

>PF06549 DUF1118: Protein of unknown function (DUF1118); InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function

Probab=99.62  E-value=9.2e-17  Score=127.72  Aligned_cols=79  Identities=44%  Similarity=0.499  Sum_probs=66.5

Q ss_pred             CCCchhhhhhHHHhhhhHHHHhhcc-chHHHHcCCchhhhhhhcchhhhhhhcccccccCCCChhhHHHHHHHHHhhccc
Q 028863           80 TSPPVKLLTRVEQLKLLSKAEKAGL-LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPS  158 (202)
Q Consensus        80 ~~~~~kvLskvEk~~LLSkaEkaGL-LS~aEklGlSLSkiEkLGLLS~AE~lglLSla~~~~sP~~L~~laL~llvagpa  158 (202)
                      +.|++|+|+|+||.||||+||++|+ ||++||+|+ |||+|++|+||++|+.+-.++..-.+.--+++.++.+.++..|.
T Consensus         1 ~~Ek~KlLs~~EkaGLLS~AE~~GlsLS~iEkLgL-lSkAE~LGlLs~a~~~~~~~P~~L~slaL~ll~ag~~~v~~vPd   79 (116)
T PF06549_consen    1 RVEKLKLLSKAEKAGLLSKAEKAGLSLSSIEKLGL-LSKAEELGLLSLAEDPASSSPGALASLALPLLVAGPAAVYLVPD   79 (116)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHcCCcHHHHHHhcc-ccchHHhhhhHhccccccCChHHHHHHHHHHHHhhhheEEEecC
Confidence            3578999999999999999999999 999999999 99999999999999998444443333334678888888888886


Q ss_pred             e
Q 028863          159 C  159 (202)
Q Consensus       159 a  159 (202)
                      -
T Consensus        80 d   80 (116)
T PF06549_consen   80 D   80 (116)
T ss_pred             C
Confidence            4

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00