Citrus Sinensis ID: 028897

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MKRPMPWGDQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNSPKSPDSTKSSSPQVL
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEccccccccccccccccccccccEEEccccccccccccccccHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkrpmpwgdqvdvissddsasdgdadngldgrqssndmtidqptkELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMkqlpiptqrssiipftswvglGNSIKQLYEQPLHYLTNIHLkqwdqlrfgtedehkpldslvhpckaEATVWLIEEVHRLTSCHHHLAklwlsdpmhyvfidsitlnspkspdstkssspqvl
Flexible Loop (DISEMBL)
mkrpmpwgdqvdvissddsasdgdadngldgrqssndmTIDQPTKELTSEVENiqkqkcqglnekgSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSItlnspkspdstkssspqvl
Low Complexity Region (SEG)
MKRPMPWgdqvdvissddsasdgdadngldgRQSSNDMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNspkspdstkssspQVL
Disordered region (IsUnstruct)
*******************************************************************LFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITL*****************
Disordered Region (DISOPRED)
*****P*******************************************************LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSIT******************
Disordered Region (DISEMBL)
********DQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNS***************
Disordered Region (DISPRO)
****MPWGDQ************************SNDMT***PTK********IQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLN****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRPMPWGDQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNSPKSPDSTKSSSPQVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9LUJ3	163	Protein RDM1 OS=Arabidops	yes	no	0.603	0.748	0.672	2e-46

>sp|Q9LUJ3|RDM1_ARATH Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1

 Score =  185 bits (469), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 102/122 (83%)

Query: 62  LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
           + ++GSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L+
Sbjct: 38  VADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQ 97

Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
           +WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDPM++ FID
Sbjct: 98  RWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFID 157

Query: 182 SI 183
            I
Sbjct: 158 PI 159

Regulator of RNA-directed DNA methylation (RdDM). Binds to single-stranded methyl DNA.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224099821	175	predicted protein [Populus trichocarpa]	0.831	0.96	0.623	3e-57
255552097	175	conserved hypothetical protein [Ricinus	0.831	0.96	0.618	4e-57
449432680	174	PREDICTED: protein RDM1-like isoform 1 [	0.821	0.954	0.604	2e-54
297737087	174	unnamed protein product [Vitis vinifera]	0.826	0.959	0.586	2e-52
359477543	137	PREDICTED: protein RDM1 [Vitis vinifera]	0.653	0.963	0.612	4e-47
351722067	165	uncharacterized protein LOC100500129 [Gl	0.777	0.951	0.540	5e-46
297830986	167	predicted protein [Arabidopsis lyrata su	0.603	0.730	0.680	2e-45
357480931	369	hypothetical protein MTR_5g006600 [Medic	0.603	0.330	0.655	6e-45
357480933	179	hypothetical protein MTR_5g006610 [Medic	0.841	0.949	0.521	7e-45
30686741	163	RNA-directed DNA methylation 1 protein [	0.603	0.748	0.672	1e-44

>gi|224099821|ref|XP_002311634.1| predicted protein [Populus trichocarpa] gi|222851454|gb|EEE89001.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/186 (62%), Positives = 139/186 (74%), Gaps = 18/186 (9%)

Query: 1   MKRPMPWGDQVDVISSDDSASDGDA---DNGLDGRQSSNDMTIDQPTKELTSEVENIQKQ 57
           MKR +PW D VDVISSD+S+S       ++GLDG++ SN +TIDQP KE TSE       
Sbjct: 1   MKRTIPWTDPVDVISSDESSSSDSDIELNDGLDGQRLSNYVTIDQPIKETTSE------- 53

Query: 58  KCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTN 117
                   G L RRAEMYQ+YM+ +PIP QR S IPF+SW GLG SIKQLY+QPLHYLTN
Sbjct: 54  --------GVLIRRAEMYQDYMRHIPIPVQRGSAIPFSSWAGLGKSIKQLYQQPLHYLTN 105

Query: 118 IHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHY 177
           I L +WDQ R G+EDEH PLD ++HPCKAEAT+WL+EEVHR TS HHH+AK+W SDPMH+
Sbjct: 106 ILLNKWDQQRIGSEDEHTPLDIMIHPCKAEATIWLVEEVHRRTSSHHHVAKIWQSDPMHH 165

Query: 178 VFIDSI 183
            F+DSI
Sbjct: 166 AFVDSI 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552097|ref|XP_002517093.1| conserved hypothetical protein [Ricinus communis] gi|223543728|gb|EEF45256.1| conserved hypothetical protein [Ricinus communis]

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 135/186 (72%), Gaps = 18/186 (9%)

Query: 1   MKRPMPWGDQVDVISSDDS-ASDGD--ADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQ 57
           MKR MPW +Q+DVISSD+S +SDGD   D  LDG + S  +TI Q  KE+TSE       
Sbjct: 1   MKRTMPWNEQIDVISSDESTSSDGDMETDVVLDGHKPSPRITISQSLKEITSE------- 53

Query: 58  KCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTN 117
                     L RRAEMYQ+YM+QLPIP    S+IPF+SWVGLG SIKQLY QPLHYLTN
Sbjct: 54  --------DVLIRRAEMYQDYMRQLPIPVHHGSVIPFSSWVGLGKSIKQLYGQPLHYLTN 105

Query: 118 IHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHY 177
           I LKQWDQLRF   DE K LD ++HPCKAEA+VWL+EE+HR TS  H++AKLWL DPMH+
Sbjct: 106 ILLKQWDQLRFDNGDEQKSLDIVIHPCKAEASVWLVEEIHRCTSSPHYVAKLWLLDPMHH 165

Query: 178 VFIDSI 183
            F+DSI
Sbjct: 166 AFVDSI 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432680|ref|XP_004134127.1| PREDICTED: protein RDM1-like isoform 1 [Cucumis sativus] gi|449432682|ref|XP_004134128.1| PREDICTED: protein RDM1-like isoform 2 [Cucumis sativus] gi|449504162|ref|XP_004162269.1| PREDICTED: protein RDM1-like isoform 1 [Cucumis sativus] gi|449504166|ref|XP_004162270.1| PREDICTED: protein RDM1-like isoform 2 [Cucumis sativus]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 138/187 (73%), Gaps = 21/187 (11%)

Query: 1   MKRPMPWGDQVDVISSDDSASD----GDADNGLDGRQSSNDMTIDQPTKELTSEVENIQK 56
           MKRPMPW +QVD+ISS +S+S        ++G + + S +D  I  P KE+TSE      
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKI--PAKEMTSE------ 52

Query: 57  QKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLT 116
                    G L +RAEMYQEYMKQ+ IP QR S+IPFT+W+GLG SIKQLY QPLHYLT
Sbjct: 53  ---------GMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLT 103

Query: 117 NIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMH 176
           NI LKQWDQLR G+ DE+KPLD+++HP KAEATVWL+EE+HR TS HHH+AKLWLSDPMH
Sbjct: 104 NILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH 163

Query: 177 YVFIDSI 183
             ++DSI
Sbjct: 164 QAYVDSI 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737087|emb|CBI26288.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 136/186 (73%), Gaps = 19/186 (10%)

Query: 1   MKRPMPWGDQVDVISSDDSASDG---DADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQ 57
           MKR  PW +QVDVISSD+S+S     + DNG   ++S  D+TIDQP ++   E       
Sbjct: 1   MKRAFPWNEQVDVISSDESSSSNPGVEVDNGSVDKKSM-DITIDQPARQEPFE------- 52

Query: 58  KCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTN 117
                     + RRAEMYQEYMKQ+PIP +R S+IPF +W+GL  SIKQLY QPLHYLTN
Sbjct: 53  --------DVVIRRAEMYQEYMKQIPIPARRGSLIPFDTWMGLAKSIKQLYGQPLHYLTN 104

Query: 118 IHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHY 177
           I +KQWDQLR G++DE++ LDS++HP KAEA++WLIEEVHR T+  HH+AKLWLSDPMHY
Sbjct: 105 ILVKQWDQLRIGSKDENRSLDSIIHPSKAEASIWLIEEVHRQTTSPHHMAKLWLSDPMHY 164

Query: 178 VFIDSI 183
            F+DSI
Sbjct: 165 AFVDSI 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477543|ref|XP_002279112.2| PREDICTED: protein RDM1 [Vitis vinifera]

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 111/147 (75%), Gaps = 15/147 (10%)

Query: 37  DMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTS 96
           D+TIDQP ++   E                 + RRAEMYQEYMKQ+PIP +R S+IPF +
Sbjct: 2   DITIDQPARQEPFE---------------DVVIRRAEMYQEYMKQIPIPARRGSLIPFDT 46

Query: 97  WVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEV 156
           W+GL  SIKQLY QPLHYLTNI +KQWDQLR G++DE++ LDS++HP KAEA++WLIEEV
Sbjct: 47  WMGLAKSIKQLYGQPLHYLTNILVKQWDQLRIGSKDENRSLDSIIHPSKAEASIWLIEEV 106

Query: 157 HRLTSCHHHLAKLWLSDPMHYVFIDSI 183
           HR T+  HH+AKLWLSDPMHY F+DSI
Sbjct: 107 HRQTTSPHHMAKLWLSDPMHYAFVDSI 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722067|ref|NP_001237231.1| uncharacterized protein LOC100500129 [Glycine max] gi|255629410|gb|ACU15051.1| unknown [Glycine max]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 123/183 (67%), Gaps = 26/183 (14%)

Query: 1   MKRPMPWGDQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQKCQ 60
           MKR  PW +Q+DV SS    S              N +TI  P   + ++ ++       
Sbjct: 1   MKRSFPWENQIDVSSSSSPNS-----------LRPNPLTI--PNSPIDTKSQD------- 40

Query: 61  GLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHL 120
                 +L RRAEMYQ+YMKQ+PIP  R ++IPFTSW+GLG S+KQ+Y QPLHYLTNI L
Sbjct: 41  ------ALIRRAEMYQDYMKQIPIPNHRGTMIPFTSWMGLGRSMKQIYGQPLHYLTNILL 94

Query: 121 KQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFI 180
           KQWDQLR G+EDE+KPLD++VHP KAEAT+WLIEE+HR TS H HLA LW  DPM+  F+
Sbjct: 95  KQWDQLRIGSEDEYKPLDNIVHPHKAEATIWLIEEIHRQTSSHFHLASLWKVDPMYNGFV 154

Query: 181 DSI 183
           DSI
Sbjct: 155 DSI 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830986|ref|XP_002883375.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329215|gb|EFH59634.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 102/122 (83%)

Query: 62  LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
           + ++GSL RRAEMYQEYMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L+
Sbjct: 38  VADEGSLLRRAEMYQEYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQ 97

Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
           +WDQ RFGT+ E + LDS+ HP KAEAT+WL+EE+HR+TS H H+A LW SDPM++ FID
Sbjct: 98  RWDQSRFGTDSEEQSLDSIFHPSKAEATIWLVEEIHRITSSHLHIASLWGSDPMYHSFID 157

Query: 182 SI 183
            I
Sbjct: 158 PI 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480931|ref|XP_003610751.1| hypothetical protein MTR_5g006600 [Medicago truncatula] gi|355512086|gb|AES93709.1| hypothetical protein MTR_5g006600 [Medicago truncatula]

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 99/122 (81%)

Query: 62  LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
           +N    L RRA MYQ+YM+Q+PIP+ R S+IPFTSW+GLG SIK+LY QPLHYLTNI LK
Sbjct: 240 INSSDVLIRRAAMYQDYMEQIPIPSSRGSVIPFTSWMGLGQSIKKLYGQPLHYLTNIILK 299

Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
           QWDQ+R G+EDE++ LD ++HPCKAEAT+WL+E+VHR  S H HLA LW  DPM+  F+D
Sbjct: 300 QWDQMRIGSEDEYRRLDDIIHPCKAEATIWLMEQVHRQASSHFHLANLWKKDPMYNGFLD 359

Query: 182 SI 183
           SI
Sbjct: 360 SI 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480933|ref|XP_003610752.1| hypothetical protein MTR_5g006610 [Medicago truncatula] gi|355512087|gb|AES93710.1| hypothetical protein MTR_5g006610 [Medicago truncatula] gi|388497794|gb|AFK36963.1| unknown [Medicago truncatula]

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 119/184 (64%), Gaps = 14/184 (7%)

Query: 1   MKRPMPWG-DQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQKC 59
           MKRP PW  D++DV  S  S    +    +     S  + I  P                
Sbjct: 1   MKRPFPWDEDEIDVSDSSSSDDSPNETPNVATVLPSIHIHIPLP-------------NPS 47

Query: 60  QGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIH 119
             +N   +L RRA MYQ+YMK +PIP+ R S+IPFTSW+GLG SIKQLY QPLHYLTNI 
Sbjct: 48  SDVNSLDALTRRAAMYQDYMKHIPIPSSRGSLIPFTSWMGLGRSIKQLYGQPLHYLTNIL 107

Query: 120 LKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVF 179
           LKQWDQLR G+EDE+ PLD ++HP KAE+T+WL+EE+HR TS H H+A LW  DPM++ F
Sbjct: 108 LKQWDQLRIGSEDEYTPLDDIIHPRKAESTIWLMEEIHRQTSSHFHIADLWKKDPMYHGF 167

Query: 180 IDSI 183
           IDSI
Sbjct: 168 IDSI 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686741|ref|NP_188907.2| RNA-directed DNA methylation 1 protein [Arabidopsis thaliana] gi|73921107|sp|Q9LUJ3.1|RDM1_ARATH RecName: Full=Protein RDM1; AltName: Full=Protein RNA-directed DNA methylation 1 gi|9279686|dbj|BAB01243.1| unnamed protein product [Arabidopsis thaliana] gi|332643143|gb|AEE76664.1| RNA-directed DNA methylation 1 protein [Arabidopsis thaliana]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 102/122 (83%)

Query: 62  LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
           + ++GSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L+
Sbjct: 38  VADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQ 97

Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
           +WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDPM++ FID
Sbjct: 98  RWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFID 157

Query: 182 SI 183
            I
Sbjct: 158 PI 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2094399	163	RDM1 "AT3G22680" [Arabidopsis	0.594	0.736	0.683	2.4e-44

TAIR|locus:2094399 RDM1 "AT3G22680" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 82/120 (68%), Positives = 101/120 (84%)

Query:    64 EKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQW 123
             ++GSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L++W
Sbjct:    40 DEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRW 99

Query:   124 DQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 183
             DQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDPM++ FID I
Sbjct:   100 DQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       165   0.00093  107 3  11 22  0.38    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.80u 0.18s 16.98t   Elapsed:  00:00:00
  Total cpu time:  16.80u 0.18s 16.98t   Elapsed:  00:00:00
  Start:  Mon May 20 20:21:47 2013   End:  Mon May 20 20:21:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006306 "DNA methylation" evidence=IGI;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0044030 "regulation of DNA methylation" evidence=IMP

GO:0070918 "production of small RNA involved in gene silencing by RNA" evidence=IMP

GO:0031047 "gene silencing by RNA" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LUJ3	RDM1_ARATH	No assigned EC number	0.6721	0.6039	0.7484	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.552.1 hypothetical protein (121 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam09187	119	pfam09187, DUF1950, Domain of unknown function(DUF	4e-63

>gnl|CDD|192224 pfam09187, DUF1950, Domain of unknown function(DUF1950)

 Score =  190 bits (485), Expect = 4e-63
 Identities = 77/116 (66%), Positives = 98/116 (84%)

Query: 68  LFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLR 127
           L R AEMYQ+YMKQLPIP++R S IP T+W GLGNS+KQLY QPLHYLTN+ L++WDQ R
Sbjct: 1   LLRPAEMYQQYMKQLPIPSKRGSHIPNTTWRGLGNSMKQLYGQPLHYLTNVLLQRWDQSR 60

Query: 128 FGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 183
            G+++EHKPLDS++HP KAEAT+W++EE HRLT+   H+A LW+SDPM++ FID I
Sbjct: 61  IGSDNEHKPLDSIIHPSKAEATIWVVEEFHRLTTSTQHVATLWISDPMYHAFIDPI 116

Members of this family pertain to a set of functionally uncharacterized hypothetical eukaryotic proteins. Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF09187	119	DUF1950: Domain of unknown function(DUF1950); Inte	100.0

>PF09187 DUF1950: Domain of unknown function(DUF1950); InterPro: IPR015270 Members of this family are a set of functionally uncharacterised hypothetical eukaryotic proteins []

Probab=100.00  E-value=2.5e-88  Score=533.81  Aligned_cols=118  Identities=76%  Similarity=1.303  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhcccCCCCCCCCccccccchhhhhHHHHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccchh
Q 028897           68 LFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAE  147 (202)
Q Consensus        68 lirrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQPLHYLTnilLkqWDq~RiGs~dE~kpLd~IIhP~kAE  147 (202)
                      |||||||||+||||||||++|||+|||+||+|||||||||||||||||||+|||||||+||||+||+||||+||||||||
T Consensus         1 liRrAemYQ~yMk~iPIP~~rgs~Ip~~sW~gL~~SiKqlYgQPLHYLTn~llkqWDq~RiGs~dE~kpLd~IIhp~kAe   80 (119)
T PF09187_consen    1 LIRRAEMYQDYMKQIPIPSSRGSVIPFTSWMGLGRSIKQLYGQPLHYLTNILLKQWDQSRIGSEDEHKPLDAIIHPCKAE   80 (119)
T ss_dssp             THHHHHHHHHHHHTS---SSSSS----SSHHHHHHHHHHHHT----HHHHHHHHHHHHTTTT-SS----GGGTS-HHHHH
T ss_pred             CcchHHHHHHHHHcCCCCCCCCCccccchHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccCCccccCcHHHhcChhhHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhccchHHHHHHHhhCCcccccccccCC
Q 028897          148 ATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITL  185 (202)
Q Consensus       148 atIW~vEevHR~tsS~~hlA~LW~~DPmy~~fiD~if~  185 (202)
                      ||||+||||||+||||+|||+||++|||||+|||+|||
T Consensus        81 atIW~vEevHR~tsS~~hlA~LW~~DPmyh~fvD~ifp  118 (119)
T PF09187_consen   81 ATIWLVEEVHRQTSSHQHLAKLWLSDPMYHAFVDSIFP  118 (119)
T ss_dssp             HHHHHHHHHHHHS--HHHHHHHHHT-TTGGGGS--S--
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCchhhhhccccCC
Confidence            99999999999999999999999999999999999998

; PDB: 2Q3T_A 1VK5_A 3GAN_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1vk5_A	157	X-Ray Structure Of Gene Product From Arabidopsis Th		4e-47
3gan_A	157	Crystal Structure Of Gene Product From Arabidopsis		4e-44

>pdb|1VK5|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g22680 Length = 157

Iteration: 1
 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 102/122 (83%)
Query: 62  LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
           + ++GSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L+
Sbjct: 32  VADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQ 91
Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
           +WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDPM++ FID
Sbjct: 92  RWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFID 151
Query: 182 SI 183
            I
Sbjct: 152 PI 153

>pdb|3GAN|A Chain A, Crystal Structure Of Gene Product From Arabidopsis Thaliana At3g22680 With Bound Suramin Length = 157

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 97/122 (79%)
Query: 62  LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
           + ++GSL RRAE YQ+Y KQ+PIPT R S+IPFTSWVGL  S KQLY QPLHYLTN+ L+
Sbjct: 32  VADEGSLLRRAEXYQDYXKQVPIPTNRGSLIPFTSWVGLSISXKQLYGQPLHYLTNVLLQ 91
Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
           +WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H A LW SDP ++ FID
Sbjct: 92  RWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHXALLWRSDPXYHSFID 151
Query: 182 SI 183
            I
Sbjct: 152 PI 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1vk5_A	157	Expressed protein; structural genomics, unknown fu	6e-66

>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A* Length = 157

 Score =  198 bits (505), Expect = 6e-66
 Identities = 87/163 (53%), Positives = 110/163 (67%), Gaps = 15/163 (9%)

Query: 21  SDGDADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMK 80
           S     + +D   S     +D   +++  E               GSL RRAEMYQ+YMK
Sbjct: 6   SGDSGSSDVDAEISDGFSPLDTSHRDVADE---------------GSLLRRAEMYQDYMK 50

Query: 81  QLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSL 140
           Q+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L++WDQ RFGT+ E + LDS+
Sbjct: 51  QVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSI 110

Query: 141 VHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 183
           +HP KAEAT+WL+EE+HRLT  H H+A LW SDPM++ FID I
Sbjct: 111 IHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1vk5_A	157	Expressed protein; structural genomics, unknown fu	100.0

>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*

Probab=100.00  E-value=3.6e-96  Score=596.98  Aligned_cols=152  Identities=59%  Similarity=1.020  Sum_probs=120.4

Q ss_pred             ccccCCCCCC---CCCCCCCCCCCCCCCccccCCCCccchHHHHHHHHhhhcCCcccchHHHHHHHHHHhcccCCCCCCC
Q 028897           12 DVISSDDSAS---DGDADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQR   88 (202)
Q Consensus        12 DviSSd~SsS---d~Ea~nGk~~~~~~n~~~l~~s~k~~~~~~~~~~k~k~~g~~es~~lirrAemYQ~yMkqiPIP~~r   88 (202)
                      ||||||+|+|   |+|++||        +||||||.|++++|               ++|||||||||+||||||||++|
T Consensus         2 dv~sS~~s~Ssd~d~e~~~g--------~~~i~~s~k~~~~e---------------~~liRrAEmYQ~YMK~iPIP~~~   58 (157)
T 1vk5_A            2 ELRPSGDSGSSDVDAEISDG--------FSPLDTSHRDVADE---------------GSLLRRAEMYQDYMKQVPIPTNR   58 (157)
T ss_dssp             ---------------------------------------------------------CTTHHHHHHHHHHHHTSCCCSSC
T ss_pred             CcccCCCCccCCccccccCC--------cccCCCcccccCcc---------------hhhhhHHHHHHHHHHhCCCCccc
Confidence            7889999887   8899988        59999999999999               99999999999999999999999


Q ss_pred             CccccccchhhhhHHHHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccchhhhHHHHHHHHhhccchHHHHH
Q 028897           89 SSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAK  168 (202)
Q Consensus        89 ~s~Ipf~sW~gLg~SiKqlYgQPLHYLTnilLkqWDq~RiGs~dE~kpLd~IIhP~kAEatIW~vEevHR~tsS~~hlA~  168 (202)
                      |++|||+||+|||||||||||||||||||+|||||||+||||+||+||||+||||||||||||+||||||+||||+|||+
T Consensus        59 ~s~Ipf~sW~gL~~SiKQlY~QPLHYLTN~LLkqWDQ~RiGs~dE~kpLd~IIhP~kAeatIW~vEE~HR~tsS~~hla~  138 (157)
T 1vk5_A           59 GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMAL  138 (157)
T ss_dssp             CSCCCCSSHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCGGGTSCHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             CCcccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccccCchhhhccchhhhhHHHHHHHHHhhcCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCcccccccccCCC
Q 028897          169 LWLSDPMHYVFIDSITLN  186 (202)
Q Consensus       169 LW~~DPmy~~fiD~if~~  186 (202)
                      ||++|||||+|||+|||+
T Consensus       139 LW~sDPmyhafiD~ifp~  156 (157)
T 1vk5_A          139 LWRSDPMYHSFIDPIFPE  156 (157)
T ss_dssp             HHHTCTTGGGGSCCCCCC
T ss_pred             HHhcCchhhhhcccCCCC
Confidence            999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1vk5a_	121	a.220.1.1 (A:) Hypothetical protein At3g22680 {Tha	3e-71

>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 121

class: All alpha proteins
fold: Hypothetical protein At3g22680
superfamily: Hypothetical protein At3g22680
family: Hypothetical protein At3g22680
domain: Hypothetical protein At3g22680
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  209 bits (534), Expect = 3e-71
 Identities = 82/118 (69%), Positives = 99/118 (83%)

Query: 66  GSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQ 125
           GSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L++WDQ
Sbjct: 1   GSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQ 60

Query: 126 LRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 183
            RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDPM++ FID I
Sbjct: 61  SRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1vk5a_	121	Hypothetical protein At3g22680 {Thale-cress (Arabi	100.0

>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: Hypothetical protein At3g22680
superfamily: Hypothetical protein At3g22680
family: Hypothetical protein At3g22680
domain: Hypothetical protein At3g22680
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.6e-87  Score=527.23  Aligned_cols=121  Identities=68%  Similarity=1.158  Sum_probs=119.4

Q ss_pred             chHHHHHHHHHHhcccCCCCCCCCccccccchhhhhHHHHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccc
Q 028897           66 GSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCK  145 (202)
Q Consensus        66 ~~lirrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQPLHYLTnilLkqWDq~RiGs~dE~kpLd~IIhP~k  145 (202)
                      ++|||||||||+||||||||++|||+|||+||+|||+|||||||||||||||+|||||||+||||+||+||||+||||||
T Consensus         1 ~~l~R~AemYQ~yMk~iPIP~~~~s~Ipf~tW~gL~~SiKQlY~QPLHYLTn~lLk~WDq~Rigs~dE~k~ld~iIhP~k   80 (121)
T d1vk5a_           1 GSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTK   80 (121)
T ss_dssp             CTTHHHHHHHHHHHHTSCCCSSCCSCCCCSSHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCGGGTSCHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCCcccCCcccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccCCccccCchhhhccchh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhccchHHHHHHHhhCCcccccccccCCC
Q 028897          146 AEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLN  186 (202)
Q Consensus       146 AEatIW~vEevHR~tsS~~hlA~LW~~DPmy~~fiD~if~~  186 (202)
                      ||||||+||||||+||||+|||+||++|||||+|||+|||.
T Consensus        81 AeatIW~vEe~HR~tsS~~h~A~LW~sDPm~hafiD~ifp~  121 (121)
T d1vk5a_          81 AEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE  121 (121)
T ss_dssp             HHHHHHHHHHHHHHSCCHHHHHHHHHTCTTGGGGSCCCCCC
T ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHhhccccCCC
Confidence            99999999999999999999999999999999999999983