Citrus Sinensis ID: 028928

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MTYCLHVSRRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAAAVGVGTCNKLLE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccEccccccccHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtyclhvsrrawqqrpsclrpirgcihgDLHLLERVANVLTSlpfialglqtprknlnmTLYANSLVGVGVTSslyhssrgkLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASAlalpiqplMVSAVHTGMMEVAFAKRalndpnlrmaHTVHKVSsllggvffiaddvfpetpylHAAWHLAAAVGVGTCNKLLE
Flexible Loop (DISEMBL)
mtyclhvsrrawqqrpsclRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAAAVGVGTCNKLLE
Low Complexity Region (SEG)
MTYCLHVSRRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAAAVGVGTCNKLLE
Disordered region (IsUnstruct)
**YCLHVSRRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAAAVGVGTCNK***
Disordered Region (DISOPRED)
*****HVSRRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAAAVGVGTCNKLL*
Disordered Region (DISEMBL)
*************QRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAAAVGVGTCNKLLE
Disordered Region (DISPRO)
*TYCLHVSRRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAAAVGVGTCNKLLE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYCLHVSRRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAAAVGVGTCNKLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
224108313	249	predicted protein [Populus trichocarpa]	0.960	0.775	0.829	5e-92
225424250	248	PREDICTED: uncharacterized protein LOC10	0.955	0.774	0.817	1e-89
297838903	244	hypothetical protein ARALYDRAFT_476225 [	0.960	0.790	0.792	2e-89
18409704	244	uncharacterized protein [Arabidopsis tha	0.960	0.790	0.782	8e-89
21617924	244	unknown [Arabidopsis thaliana]	0.960	0.790	0.777	2e-88
79350419	248	uncharacterized protein [Arabidopsis tha	0.960	0.778	0.772	2e-85
297850762	245	hypothetical protein ARALYDRAFT_472566 [	0.960	0.787	0.772	2e-85
255570142	262	conserved hypothetical protein [Ricinus	0.960	0.736	0.803	7e-85
60547591	248	hypothetical protein At1g23110 [Arabidop	0.960	0.778	0.766	1e-84
242044664	255	hypothetical protein SORBIDRAFT_02g02448	0.960	0.756	0.746	3e-82

>gi|224108313|ref|XP_002314801.1| predicted protein [Populus trichocarpa] gi|222863841|gb|EEF00972.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 160/193 (82%), Positives = 173/193 (89%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
           +R WQQRP CLRPI+GCIHGD HL E VANV+TSLPFIALG+Q PRKNLN  LYANSL+G
Sbjct: 57  QRVWQQRPGCLRPIQGCIHGDQHLAETVANVITSLPFIALGIQAPRKNLNTKLYANSLIG 116

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VGV SSLYHSSRGKLRKYLRW DY MIATATVCLSRALR+ENPK LMAASA  LPIQPLM
Sbjct: 117 VGVASSLYHSSRGKLRKYLRWFDYTMIATATVCLSRALRNENPKFLMAASAALLPIQPLM 176

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VSA+HTGMMEVAFAKRAL DP+LRMAH +HK+SSLLGGV FIADD FP TP+LHA WHLA
Sbjct: 177 VSAIHTGMMEVAFAKRALKDPDLRMAHNLHKMSSLLGGVLFIADDCFPSTPFLHAGWHLA 236

Query: 189 AAVGVGTCNKLLE 201
           AA+GVGTCNKLL+
Sbjct: 237 AAIGVGTCNKLLK 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424250|ref|XP_002284485.1| PREDICTED: uncharacterized protein LOC100249059 [Vitis vinifera] gi|147801559|emb|CAN77015.1| hypothetical protein VITISV_036885 [Vitis vinifera] gi|297737691|emb|CBI26892.3| unnamed protein product [Vitis vinifera]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/192 (81%), Positives = 173/192 (90%)

Query: 10  RAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGV 69
           + WQQRP+CLRP+R C++GD  L E VANVLTSLPFIALG+Q PRKNLN  LYANSL+GV
Sbjct: 57  QVWQQRPACLRPVRCCLNGDESLGETVANVLTSLPFIALGIQAPRKNLNCKLYANSLIGV 116

Query: 70  GVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMV 129
           G+ S LYHSSRGKLRKYLRWADY MIATATVCLSRA+R+ENPK+LMAASA  LPIQPLMV
Sbjct: 117 GIASGLYHSSRGKLRKYLRWADYTMIATATVCLSRAIRNENPKLLMAASAFFLPIQPLMV 176

Query: 130 SAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAA 189
           SAVHTGMMEVAFAKRAL+DP+LRM H VHK+SSLLGG  FIADDVFP TP++HAAWHLAA
Sbjct: 177 SAVHTGMMEVAFAKRALDDPDLRMVHNVHKMSSLLGGALFIADDVFPRTPFIHAAWHLAA 236

Query: 190 AVGVGTCNKLLE 201
           AVGVGTCNKLLE
Sbjct: 237 AVGVGTCNKLLE 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838903|ref|XP_002887333.1| hypothetical protein ARALYDRAFT_476225 [Arabidopsis lyrata subsp. lyrata] gi|297333174|gb|EFH63592.1| hypothetical protein ARALYDRAFT_476225 [Arabidopsis lyrata subsp. lyrata]

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 153/193 (79%), Positives = 171/193 (88%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
            R WQQRP CLRPI   IHGD  +LE  ANV+TS+PFI LG+Q PRKNLNM +YANSL+G
Sbjct: 52  ERVWQQRPPCLRPIHCSIHGDQSILETAANVITSIPFIFLGMQAPRKNLNMKVYANSLIG 111

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VG+ SSLYHSSRGKLRKYLRWADY MIATATVCL+RALR+ENPK LMAASALALP QPL+
Sbjct: 112 VGIASSLYHSSRGKLRKYLRWADYTMIATATVCLTRALREENPKFLMAASALALPFQPLV 171

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VSAVHTGMMEVAFAKRAL DP+L+MAH VHK+SSLLGG  FIADD+FPETP++HA WHLA
Sbjct: 172 VSAVHTGMMEVAFAKRALEDPDLKMAHDVHKMSSLLGGALFIADDLFPETPFIHAGWHLA 231

Query: 189 AAVGVGTCNKLLE 201
           AA+GVGTCNKLL+
Sbjct: 232 AAIGVGTCNKLLQ 244

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409704|ref|NP_565005.1| uncharacterized protein [Arabidopsis thaliana] gi|5902404|gb|AAD55506.1|AC008148_16 Unknown protein [Arabidopsis thaliana] gi|15293127|gb|AAK93674.1| unknown protein [Arabidopsis thaliana] gi|19310637|gb|AAL85049.1| unknown protein [Arabidopsis thaliana] gi|332197016|gb|AEE35137.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  332 bits (850), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 151/193 (78%), Positives = 170/193 (88%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
            R WQQRP CLRPI   IHGD  +LE  ANV+TS+PFI LG+Q PRKNLNM +YANSL+G
Sbjct: 52  ERVWQQRPPCLRPIHCSIHGDQSILETAANVITSIPFIFLGMQAPRKNLNMKVYANSLIG 111

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VG+ SSLYHSSRGK RKYLRWADY MIATAT+CL+RALR+ENPK LMAASALALP QPL+
Sbjct: 112 VGIASSLYHSSRGKFRKYLRWADYTMIATATICLTRALREENPKFLMAASALALPFQPLV 171

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VSAVHTGMMEVAFAKRAL DP+L+MAH VHK+SSLLGG  FIADD+FPETP++HA WHLA
Sbjct: 172 VSAVHTGMMEVAFAKRALEDPDLKMAHDVHKMSSLLGGALFIADDLFPETPFIHAGWHLA 231

Query: 189 AAVGVGTCNKLLE 201
           AA+GVGTCNKLL+
Sbjct: 232 AAIGVGTCNKLLQ 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21617924|gb|AAM66974.1| unknown [Arabidopsis thaliana]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 150/193 (77%), Positives = 170/193 (88%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
            R WQQRP CLRPI   IHGD  +LE  ANV+TS+PFI LG+Q PRKNLN+ +YANSL+G
Sbjct: 52  ERVWQQRPPCLRPIHCSIHGDQSILETAANVITSIPFIFLGMQAPRKNLNIKVYANSLIG 111

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VG+ SSLYHSSRGK RKYLRWADY MIATAT+CL+RALR+ENPK LMAASALALP QPL+
Sbjct: 112 VGIASSLYHSSRGKFRKYLRWADYTMIATATICLTRALREENPKFLMAASALALPFQPLV 171

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VSAVHTGMMEVAFAKRAL DP+L+MAH VHK+SSLLGG  FIADD+FPETP++HA WHLA
Sbjct: 172 VSAVHTGMMEVAFAKRALEDPDLKMAHDVHKMSSLLGGALFIADDLFPETPFIHAGWHLA 231

Query: 189 AAVGVGTCNKLLE 201
           AA+GVGTCNKLL+
Sbjct: 232 AAIGVGTCNKLLQ 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79350419|ref|NP_173724.2| uncharacterized protein [Arabidopsis thaliana] gi|186478778|ref|NP_001117336.1| uncharacterized protein [Arabidopsis thaliana] gi|186478780|ref|NP_001117337.1| uncharacterized protein [Arabidopsis thaliana] gi|334182781|ref|NP_001185068.1| uncharacterized protein [Arabidopsis thaliana] gi|334182783|ref|NP_001185069.1| uncharacterized protein [Arabidopsis thaliana] gi|49823472|gb|AAT68719.1| hypothetical protein At1g23110 [Arabidopsis thaliana] gi|332192216|gb|AEE30337.1| uncharacterized protein [Arabidopsis thaliana] gi|332192217|gb|AEE30338.1| uncharacterized protein [Arabidopsis thaliana] gi|332192218|gb|AEE30339.1| uncharacterized protein [Arabidopsis thaliana] gi|332192219|gb|AEE30340.1| uncharacterized protein [Arabidopsis thaliana] gi|332192220|gb|AEE30341.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 163/193 (84%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
            R WQQRP CLRPI   I GD  +LE  ANV TSLPFI LG+Q PRKNLN  +YANSL+G
Sbjct: 56  ERFWQQRPPCLRPICCSIRGDQSVLETAANVATSLPFIFLGMQAPRKNLNTKVYANSLIG 115

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VG+ SSLYH+SRGKLRKYLRW DY MIAT T+CLSRALR+ENPK LMAASAL LP QPLM
Sbjct: 116 VGIASSLYHASRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFLMAASALVLPFQPLM 175

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VSAVHTGMMEVAFAKR+L DP+L+ AH VHK+SSLLGG  FIADD FPETP+LHA WHLA
Sbjct: 176 VSAVHTGMMEVAFAKRSLKDPDLKTAHNVHKMSSLLGGALFIADDFFPETPFLHAGWHLA 235

Query: 189 AAVGVGTCNKLLE 201
           AA+GVGTCNKLLE
Sbjct: 236 AAIGVGTCNKLLE 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850762|ref|XP_002893262.1| hypothetical protein ARALYDRAFT_472566 [Arabidopsis lyrata subsp. lyrata] gi|297339104|gb|EFH69521.1| hypothetical protein ARALYDRAFT_472566 [Arabidopsis lyrata subsp. lyrata]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 163/193 (84%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
            R WQQRP CLRPI   I GD  +LE  ANV TSLPFI LGLQ PRKNLN  +YANSL+G
Sbjct: 53  ERFWQQRPPCLRPICCSIRGDQSVLETAANVATSLPFIFLGLQAPRKNLNTKVYANSLIG 112

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VG+ SSLYH+SRGKLRKYLRW DY MIAT T+CLSRALR+ENPK LMAASAL LP QPLM
Sbjct: 113 VGIASSLYHASRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFLMAASALVLPFQPLM 172

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VSAVHTGMMEVAFAKR+L DP+L+ AH VHK+SSLLGG  FIADD FPETP++HA WHLA
Sbjct: 173 VSAVHTGMMEVAFAKRSLKDPDLKTAHNVHKMSSLLGGALFIADDFFPETPFIHAGWHLA 232

Query: 189 AAVGVGTCNKLLE 201
           AA+GVGTCNKLLE
Sbjct: 233 AAIGVGTCNKLLE 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570142|ref|XP_002526033.1| conserved hypothetical protein [Ricinus communis] gi|223534680|gb|EEF36373.1| conserved hypothetical protein [Ricinus communis]

 Score =  318 bits (815), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 155/193 (80%), Positives = 172/193 (89%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
           +RAW+QRP CLRPIR CI+GD HL E VANVLTSLPFIALGLQ PRKNL   +YANSL+G
Sbjct: 70  QRAWEQRPGCLRPIRCCINGDKHLAETVANVLTSLPFIALGLQAPRKNLTTKMYANSLIG 129

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VGV SSLYHSSRG++RKYLRW DY MIAT TVCLSRALR+ENPK+LMAASA  LPI+PLM
Sbjct: 130 VGVASSLYHSSRGRIRKYLRWLDYTMIATTTVCLSRALRNENPKLLMAASAALLPIKPLM 189

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VS VHTGMMEVAFAKRAL DP+LRMAH +HK+SSLLGGV FIADD+FP TP++HA WH+A
Sbjct: 190 VSVVHTGMMEVAFAKRALKDPDLRMAHNLHKMSSLLGGVLFIADDLFPSTPFIHAGWHIA 249

Query: 189 AAVGVGTCNKLLE 201
           AAVGVGTCNKLLE
Sbjct: 250 AAVGVGTCNKLLE 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60547591|gb|AAX23759.1| hypothetical protein At1g23110 [Arabidopsis thaliana]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/193 (76%), Positives = 162/193 (83%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
            R WQQRP CLRPI   I GD  +LE  ANV TSLPFI LG+Q PRKNLN  +YANSL+G
Sbjct: 56  ERFWQQRPPCLRPICCSIRGDQSVLETAANVATSLPFIFLGMQAPRKNLNTKVYANSLIG 115

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VG+ SSLYH+SRGKLRKYLRW DY MIAT T+CLSRALR+ENPK LMAASAL LP QPLM
Sbjct: 116 VGIASSLYHASRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFLMAASALVLPFQPLM 175

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VSAVHTGMMEVAFAKR+L DP+L+ AH VHK+SSLLGG  FIADD FPETP+LHA WHLA
Sbjct: 176 VSAVHTGMMEVAFAKRSLKDPDLKTAHNVHKMSSLLGGALFIADDFFPETPFLHAGWHLA 235

Query: 189 AAVGVGTCNKLLE 201
           AA+ VGTCNKLLE
Sbjct: 236 AAIXVGTCNKLLE 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242044664|ref|XP_002460203.1| hypothetical protein SORBIDRAFT_02g024480 [Sorghum bicolor] gi|241923580|gb|EER96724.1| hypothetical protein SORBIDRAFT_02g024480 [Sorghum bicolor]

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 165/193 (85%)

Query: 9   RRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVG 68
           RR WQQ PSCL+PI   I  D H  E +ANV+TSLPFI LGLQTPRKNLN  +YANSLVG
Sbjct: 63  RRVWQQIPSCLKPIHCTITCDKHAGETIANVVTSLPFIVLGLQTPRKNLNTAIYANSLVG 122

Query: 69  VGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLM 128
           VGV SSLYHSS+G++RK+LRWADY MIAT T+CLSRAL +ENP++LM ASAL LP QPLM
Sbjct: 123 VGVASSLYHSSKGEIRKFLRWADYTMIATTTLCLSRALSNENPRLLMTASALLLPFQPLM 182

Query: 129 VSAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLA 188
           VSAVHTG+MEV+FA+RA  +P LRMAH +HK+SSLLGG  FIADD FPETPY+HAAWHLA
Sbjct: 183 VSAVHTGLMEVSFARRASIEPELRMAHNLHKMSSLLGGALFIADDCFPETPYIHAAWHLA 242

Query: 189 AAVGVGTCNKLLE 201
           AA+G+GTCNKLLE
Sbjct: 243 AAIGIGTCNKLLE 255

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2013935	244	AT1G70900 "AT1G70900" [Arabido	0.955	0.786	0.786	7.4e-82
TAIR|locus:2201215	248	AT1G23110 "AT1G23110" [Arabido	0.955	0.774	0.776	1.4e-78

TAIR|locus:2013935 AT1G70900 "AT1G70900" [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 151/192 (78%), Positives = 170/192 (88%)

Query:    10 RAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGV 69
             R WQQRP CLRPI   IHGD  +LE  ANV+TS+PFI LG+Q PRKNLNM +YANSL+GV
Sbjct:    53 RVWQQRPPCLRPIHCSIHGDQSILETAANVITSIPFIFLGMQAPRKNLNMKVYANSLIGV 112

Query:    70 GVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMV 129
             G+ SSLYHSSRGK RKYLRWADY MIATAT+CL+RALR+ENPK LMAASALALP QPL+V
Sbjct:   113 GIASSLYHSSRGKFRKYLRWADYTMIATATICLTRALREENPKFLMAASALALPFQPLVV 172

Query:   130 SAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAA 189
             SAVHTGMMEVAFAKRAL DP+L+MAH VHK+SSLLGG  FIADD+FPETP++HA WHLAA
Sbjct:   173 SAVHTGMMEVAFAKRALEDPDLKMAHDVHKMSSLLGGALFIADDLFPETPFIHAGWHLAA 232

Query:   190 AVGVGTCNKLLE 201
             A+GVGTCNKLL+
Sbjct:   233 AIGVGTCNKLLQ 244

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2201215 AT1G23110 "AT1G23110" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 149/192 (77%), Positives = 163/192 (84%)

Query:    10 RAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGV 69
             R WQQRP CLRPI   I GD  +LE  ANV TSLPFI LG+Q PRKNLN  +YANSL+GV
Sbjct:    57 RFWQQRPPCLRPICCSIRGDQSVLETAANVATSLPFIFLGMQAPRKNLNTKVYANSLIGV 116

Query:    70 GVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMV 129
             G+ SSLYH+SRGKLRKYLRW DY MIAT T+CLSRALR+ENPK LMAASAL LP QPLMV
Sbjct:   117 GIASSLYHASRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFLMAASALVLPFQPLMV 176

Query:   130 SAVHTGMMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHLAA 189
             SAVHTGMMEVAFAKR+L DP+L+ AH VHK+SSLLGG  FIADD FPETP+LHA WHLAA
Sbjct:   177 SAVHTGMMEVAFAKRSLKDPDLKTAHNVHKMSSLLGGALFIADDFFPETPFLHAGWHLAA 236

Query:   190 AVGVGTCNKLLE 201
             A+GVGTCNKLLE
Sbjct:   237 AIGVGTCNKLLE 248


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.135   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       201   0.00089  111 3  11 22  0.40    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  173 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.18u 0.10s 16.28t   Elapsed:  00:00:01
  Total cpu time:  16.18u 0.10s 16.28t   Elapsed:  00:00:01
  Start:  Thu May  9 22:33:44 2013   End:  Thu May  9 22:33:45 2013

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
COG1272	226	Predicted membrane protein, hemolysin III homolog	100.0
PRK15087	219	hemolysin; Provisional	100.0
TIGR01065	204	hlyIII channel protein, hemolysin III family. This	99.98
KOG4243	298	consensus Macrophage maturation-associated protein	99.9
PF03006	222	HlyIII: Haemolysin-III related; InterPro: IPR00425	99.88
PF05875	262	Ceramidase: Ceramidase; InterPro: IPR008901 This e	99.31
KOG0748	286	consensus Predicted membrane proteins, contain hem	98.99
KOG2329	276	consensus Alkaline ceramidase [Lipid transport and	98.27
PF12036	186	DUF3522: Protein of unknown function (DUF3522); In	95.88
KOG2970	319	consensus Predicted membrane protein [Function unk	83.52

>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]

Probab=100.00  E-value=1e-37  Score=264.76  Aligned_cols=162  Identities=24%  Similarity=0.288  Sum_probs=144.8

Q ss_pred             CCCchhhHHHHHhHHHHHHHh----------c---CCchhHHHHHHHHHHHHHHHHHHhhhhccch--hHHHHHHHhhhh
Q 028928           29 DLHLLERVANVLTSLPFIALG----------L---QTPRKNLNMTLYANSLVGVGVTSSLYHSSRG--KLRKYLRWADYA   93 (201)
Q Consensus        29 ~~~~~ee~~N~~TH~i~li~~----------~---~~~~~~~~~~vy~~sli~l~~~StlYH~~~~--~~k~~~r~lDH~   93 (201)
                      .++..||.+|++||+++.++.          +   .++.+.++..+|+.|++.+|++||+||+.++  |.|+++||+||+
T Consensus        15 ~~~~~~e~~n~~tHlvGail~i~~l~~l~~~a~~~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~   94 (226)
T COG1272          15 SYSWHEEIANAITHLIGAILAIVGLVLLLVYALITGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHS   94 (226)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHH
Confidence            678889999999999964321          1   5678899999999999999999999999984  999999999999


Q ss_pred             hh----h--hhHHHHHhhcCCchhHHHHHH------HHh----hcCC-cchHHHH--HHHHHHHHHHHHHhhcCcccccC
Q 028928           94 MI----A--TATVCLSRALRDENPKMLMAA------SAL----ALPI-QPLMVSA--VHTGMMEVAFAKRALNDPNLRMA  154 (201)
Q Consensus        94 aI----A--YTP~~l~~~l~~~~~~~lla~------~Gi----~~~~-~~~l~~~--l~mGw~~i~~~~~l~~~~~~~~l  154 (201)
                      +|    |  |||+++. .+++..++.++++      .||    .+++ +|+++..  ++|||++++.++++.     +.+
T Consensus        95 ~I~vLIAgSyTP~~l~-~l~~~~~~~~~~iiW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~-----~~l  168 (226)
T COG1272          95 GIYVLIAGSYTPFLLV-GLYGPLGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLI-----AKL  168 (226)
T ss_pred             HHHHHHHHhhHHHhHH-HhccchHHHHHHHHHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHH-----HhC
Confidence            99    4  9999997 9999999987765      666    4455 8888888  999999999999999     999


Q ss_pred             cHHHHHHHHHhhHHHhhcccc---c--CCCchhhHHHHHHHHHHHhh
Q 028928          155 HTVHKVSSLLGGVFFIADDVF---P--ETPYLHAAWHLAAAVGVGTC  196 (201)
Q Consensus       155 ~~~~~~lll~GG~~YtiG~if---~--~~p~~H~IWHlfV~~ga~~~  196 (201)
                      |+..+.++++||++|++|++|   |  +.|+.|+|||+||++||+++
T Consensus       169 ~~~~~~~l~~GGv~YsvG~ifY~~~~~~~~~~H~iwH~fVv~ga~~H  215 (226)
T COG1272         169 GLIGLVLLALGGVLYSVGAIFYVLRIDRIPYSHAIWHLFVVGGAACH  215 (226)
T ss_pred             chHHHHHHHHHhHHheeeeEEEEEeeccCCchHHHHHHHHHHHHHHH
Confidence            999999999999999999999   5  69999999999999999875

>PRK15087 hemolysin; Provisional

Probab=100.00  E-value=8.5e-37  Score=258.47  Aligned_cols=163  Identities=20%  Similarity=0.251  Sum_probs=140.6

Q ss_pred             CCCchhhHHHHHhHHHHHHHh----------c----CCchhHHHHHHHHHHHHHHHHHHhhhhccch-hHHHHHHHhhhh
Q 028928           29 DLHLLERVANVLTSLPFIALG----------L----QTPRKNLNMTLYANSLVGVGVTSSLYHSSRG-KLRKYLRWADYA   93 (201)
Q Consensus        29 ~~~~~ee~~N~~TH~i~li~~----------~----~~~~~~~~~~vy~~sli~l~~~StlYH~~~~-~~k~~~r~lDH~   93 (201)
                      .+++.||.+|++||+++++..          +    .+..+..++.+|+++++++|++||+||..++ +.|+++||+||+
T Consensus        10 ~~~~~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~   89 (219)
T PRK15087         10 GYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHC   89 (219)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHH
Confidence            367789999999999954321          1    2335678899999999999999999999985 889999999999


Q ss_pred             hh----h--hhHHHHHhhcCCchhHHHHHH------HHh----hcCC-cchHHHH--HHHHHHHHHHHHHhhcCcccccC
Q 028928           94 MI----A--TATVCLSRALRDENPKMLMAA------SAL----ALPI-QPLMVSA--VHTGMMEVAFAKRALNDPNLRMA  154 (201)
Q Consensus        94 aI----A--YTP~~l~~~l~~~~~~~lla~------~Gi----~~~~-~~~l~~~--l~mGw~~i~~~~~l~~~~~~~~l  154 (201)
                      +|    |  |||+++. .+++++++.++++      .|+    ++.+ +|++++.  ++|||++++.++++.     +.+
T Consensus        90 ~I~llIaGsytP~~~~-~~~~~~~~~l~~~iW~~a~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~~~~~l~-----~~~  163 (219)
T PRK15087         90 AIYLLIAGTYTPFLLV-GLDSPLARGLMIVIWSLALLGILFKLAFAHRFKVLSLVTYLAMGWLSLIVIYQLA-----IKL  163 (219)
T ss_pred             HHHHHHHHhhHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH-----HhC
Confidence            99    4  9999997 8888888876554      576    4455 7888888  999999999999998     888


Q ss_pred             cHHHHHHHHHhhHHHhhcccc---cCCCchhhHHHHHHHHHHHhhh
Q 028928          155 HTVHKVSSLLGGVFFIADDVF---PETPYLHAAWHLAAAVGVGTCN  197 (201)
Q Consensus       155 ~~~~~~lll~GG~~YtiG~if---~~~p~~H~IWHlfV~~ga~~~~  197 (201)
                      ++.++.|+++||++|++|++|   |+.|+.|+|||+||++|+.++-
T Consensus       164 ~~~~l~~l~~GG~~Y~~G~~fY~~~~~p~~H~IwH~fVl~ga~~H~  209 (219)
T PRK15087        164 AIGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHF  209 (219)
T ss_pred             CHHHHHHHHHHhHHHHhhHHHHccCCCCCchhHHHHHHHHHHHHHH
Confidence            999999999999999999999   5799999999999999998764

>TIGR01065 hlyIII channel protein, hemolysin III family

Probab=99.98  E-value=2.2e-31  Score=222.90  Aligned_cols=158  Identities=23%  Similarity=0.230  Sum_probs=133.9

Q ss_pred             hhHHHHHhHHHHHHH----------hc---CCchhHHHHHHHHHHHHHHHHHHhhhhccch--hHHHHHHHhhhhhh---
Q 028928           34 ERVANVLTSLPFIAL----------GL---QTPRKNLNMTLYANSLVGVGVTSSLYHSSRG--KLRKYLRWADYAMI---   95 (201)
Q Consensus        34 ee~~N~~TH~i~li~----------~~---~~~~~~~~~~vy~~sli~l~~~StlYH~~~~--~~k~~~r~lDH~aI---   95 (201)
                      ||.+|++||+++.+.          .+   .+..+..+..+|+++++++|++||+||..+.  +.++++||+||++|   
T Consensus         1 ~e~~N~~tH~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~l   80 (204)
T TIGR01065         1 EEIANAITHGIGAVLSIIALALLVIYSWDHGGAVAVLGFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVL   80 (204)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHH
Confidence            799999999995432          11   3345789999999999999999999998873  88999999999999   


Q ss_pred             -h--hhHHHHHhhcCCchhHHHHHH------HHh----hcCC-cchHHHH--HHHHHHHHHHHHHhhcCcccccCcHHHH
Q 028928           96 -A--TATVCLSRALRDENPKMLMAA------SAL----ALPI-QPLMVSA--VHTGMMEVAFAKRALNDPNLRMAHTVHK  159 (201)
Q Consensus        96 -A--YTP~~l~~~l~~~~~~~lla~------~Gi----~~~~-~~~l~~~--l~mGw~~i~~~~~l~~~~~~~~l~~~~~  159 (201)
                       +  |||.++. .+.+.+++.++.+      +|+    ++.+ +|++++.  ++|||+++..++++.     +.+++.++
T Consensus        81 IaGsytP~~~~-~~~~~~~~~~~~~iw~la~~gi~~~~~~~~~~r~~r~~~y~~~G~~~v~~~~~~~-----~~~~~~~~  154 (204)
T TIGR01065        81 IAGTYTPFLLL-ALPGPLGWTVLWIIWGLAIGGIIYKLFFHKRPRWLSLFLYLIMGWLVVLVIKPLY-----HNLPGAGF  154 (204)
T ss_pred             HHHhhHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHH-----HhCCHHHH
Confidence             3  9999997 8888887766554      565    4445 7888887  999999999999888     78899999


Q ss_pred             HHHHHhhHHHhhcccc---c-CCCch-hhHHHHHHHHHHHhhh
Q 028928          160 VSSLLGGVFFIADDVF---P-ETPYL-HAAWHLAAAVGVGTCN  197 (201)
Q Consensus       160 ~lll~GG~~YtiG~if---~-~~p~~-H~IWHlfV~~ga~~~~  197 (201)
                      .++++||++|++|++|   | +.|+. |+|||+||++|+.++-
T Consensus       155 ~~l~~gg~~Y~~G~~fY~~~~p~~~~~H~iwH~fV~~g~~~h~  197 (204)
T TIGR01065       155 SLLAAGGLLYTVGAIFYALKWPIPFTYHAIWHLFVLGASACHF  197 (204)
T ss_pred             HHHHHHhHHHHcchHheeecCCCCCCcChHHHHHHHHHHHHHH
Confidence            9999999999999999   3 67788 9999999999998753

This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.

>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]

Probab=99.90  E-value=8.6e-25  Score=184.70  Aligned_cols=159  Identities=26%  Similarity=0.311  Sum_probs=128.1

Q ss_pred             CCchhhHHHHHhHHHHHH---Hh-------cCCchhHHHHHHHHHHHHHHHHHHhhhhccc------h---hHHHHHHHh
Q 028928           30 LHLLERVANVLTSLPFIA---LG-------LQTPRKNLNMTLYANSLVGVGVTSSLYHSSR------G---KLRKYLRWA   90 (201)
Q Consensus        30 ~~~~ee~~N~~TH~i~li---~~-------~~~~~~~~~~~vy~~sli~l~~~StlYH~~~------~---~~k~~~r~l   90 (201)
                      .|..|..+|++||+++++   ++       +++-++.+...|||..++.+|++||.||...      +   +.|..+.++
T Consensus        81 PT~~EhvAN~~tHai~I~PaIl~~~~l~~~s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~c  160 (298)
T KOG4243|consen   81 PTEYEHVANCYTHAIWIVPAILGSALLHRLSDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHMC  160 (298)
T ss_pred             CchHHHHHhhHhhHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467789999999999764   11       2677899999999999999999999999863      1   467899999


Q ss_pred             hhhhh----h--hhHHHHHhhcCC-----chhHHHHHHHHh---hcCC--cchHHHH--HHHHHHHHHHHHHhhcCcccc
Q 028928           91 DYAMI----A--TATVCLSRALRD-----ENPKMLMAASAL---ALPI--QPLMVSA--VHTGMMEVAFAKRALNDPNLR  152 (201)
Q Consensus        91 DH~aI----A--YTP~~l~~~l~~-----~~~~~lla~~Gi---~~~~--~~~l~~~--l~mGw~~i~~~~~l~~~~~~~  152 (201)
                      |+++|    |  |+|+..++-++.     .|-.|+++.+||   +..+  ++.++++  +.||.-+..++-        .
T Consensus       161 DRa~IY~FIAaSY~PWLtLr~~g~~~~~m~W~IWlmA~~Gi~Yq~~fHErYK~lEt~~Ylvmg~gPalvv~--------s  232 (298)
T KOG4243|consen  161 DRAVIYFFIAASYAPWLTLRELGPLASHMRWFIWLMAAGGIIYQFLFHERYKVLETFFYLVMGFGPALVVT--------S  232 (298)
T ss_pred             hhhHhhhhhhhcccccccHHhhCcHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhcCceEEEE--------E
Confidence            99999    4  999976653333     356678888999   3333  7778888  999987766553        2


Q ss_pred             cCcHHHHHHHHHhhHHHhhcccc----cCCCchhhHHHHHHHHHHHhh
Q 028928          153 MAHTVHKVSSLLGGVFFIADDVF----PETPYLHAAWHLAAAVGVGTC  196 (201)
Q Consensus       153 ~l~~~~~~lll~GG~~YtiG~if----~~~p~~H~IWHlfV~~ga~~~  196 (201)
                      .-...++.++..||.+|.+|.+|    ..+|+.|+|||+||+.||+|.
T Consensus       233 m~~~~Gl~~l~~GG~~Y~lGvvFFK~DG~ipfAHAIWHLFV~l~A~cH  280 (298)
T KOG4243|consen  233 MNNTDGLQELATGGLFYCLGVVFFKSDGIIPFAHAIWHLFVALAAGCH  280 (298)
T ss_pred             eCCchhHHHHHhCCEEEEEEEEEEecCCceehHHHHHHHHHHHHcchh
Confidence            33467889999999999999999    468999999999999999874

>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins

Probab=99.88  E-value=9e-22  Score=163.94  Aligned_cols=160  Identities=18%  Similarity=0.159  Sum_probs=120.1

Q ss_pred             CchhhHHHHHhHHHHHHHh----------c--C--CchhHHHHHHHHHHHHHHHHHHhhhhccc---h-hHHHHHHHhhh
Q 028928           31 HLLERVANVLTSLPFIALG----------L--Q--TPRKNLNMTLYANSLVGVGVTSSLYHSSR---G-KLRKYLRWADY   92 (201)
Q Consensus        31 ~~~ee~~N~~TH~i~li~~----------~--~--~~~~~~~~~vy~~sli~l~~~StlYH~~~---~-~~k~~~r~lDH   92 (201)
                      +.-||.+|.+||+++.+..          .  +  +........+|..+.+.++++||+||.+.   . +.+++++++||
T Consensus         2 ~~hNEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~   81 (222)
T PF03006_consen    2 QLHNETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDY   81 (222)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcch
Confidence            3568999999999964321          1  2  34578899999999999999999999954   3 78999999999


Q ss_pred             hhh----h--hhHHHHHhhc--CCchhHHHHHH------HHh---h-cC---C-cchHHHH--HHHHHHHHHHHHHhhcC
Q 028928           93 AMI----A--TATVCLSRAL--RDENPKMLMAA------SAL---A-LP---I-QPLMVSA--VHTGMMEVAFAKRALND  148 (201)
Q Consensus        93 ~aI----A--YTP~~l~~~l--~~~~~~~lla~------~Gi---~-~~---~-~~~l~~~--l~mGw~~i~~~~~l~~~  148 (201)
                      ++|    +  |||.+.. .+  .+.+++..+++      .|+   . ..   . .+.+++.  +.|||.++.......  
T Consensus        82 ~gI~l~i~gs~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~--  158 (222)
T PF03006_consen   82 AGIFLLIAGSYTPFIYY-GFYCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRI--  158 (222)
T ss_pred             hhhhHhHhhhhhhHHHh-hccccchHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHH--
Confidence            999    2  9999886 67  35555544433      555   1 11   1 3445555  999999988777633  


Q ss_pred             cccccCcHHH----HHHHHHhhHHHhhcccc---c------CCCc-----hhhHHHHHHHHHHHhh
Q 028928          149 PNLRMAHTVH----KVSSLLGGVFFIADDVF---P------ETPY-----LHAAWHLAAAVGVGTC  196 (201)
Q Consensus       149 ~~~~~l~~~~----~~lll~GG~~YtiG~if---~------~~p~-----~H~IWHlfV~~ga~~~  196 (201)
                         ..++..+    +.+++.|+++|++|++|   +      +.|+     .|.+||+||++|+.++
T Consensus       159 ---~~~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~~h  221 (222)
T PF03006_consen  159 ---FFLGGWGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAALCH  221 (222)
T ss_pred             ---HHhccccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHHHH
Confidence               3333333    88899999999999999   2      3445     7999999999998764

This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane

>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases

Probab=99.31  E-value=5e-11  Score=102.99  Aligned_cols=180  Identities=20%  Similarity=0.226  Sum_probs=106.1

Q ss_pred             CCCCcc-cccCCCC-CchhhHHHHHhHHHHHHHhc------CCchhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHH
Q 028928           18 CLRPIR-GCIHGDL-HLLERVANVLTSLPFIALGL------QTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRW   89 (201)
Q Consensus        18 ~~~~~~-~~~~~~~-~~~ee~~N~~TH~i~li~~~------~~~~~~~~~~vy~~sli~l~~~StlYH~~~~~~k~~~r~   89 (201)
                      .+++++ ||.|-.. ...-|++|++||+.+++.+.      .+........+..+++++++..|++||++.+   ...|.
T Consensus         7 ~ts~~dwCE~nY~~s~yiAEf~NtlSNl~fi~~al~gl~~~~~~~~~~~~~l~~~~l~~VGiGS~~FHaTl~---~~~ql   83 (262)
T PF05875_consen    7 PTSTIDWCEENYVVSPYIAEFWNTLSNLAFIVAALYGLYLARRRGLERRFALLYLGLALVGIGSFLFHATLS---YWTQL   83 (262)
T ss_pred             CCcccccchhccccCcccchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhHHHHHhChh---hhHHH
Confidence            345556 5544332 23369999999999887543      1112223445667789999999999999876   55899


Q ss_pred             hhhhhh--h---hhHHHHHhhc-CCchhHHH---HHHHHh-----hcC-CcchHHHH------HHHHHHHHHHHHH----
Q 028928           90 ADYAMI--A---TATVCLSRAL-RDENPKML---MAASAL-----ALP-IQPLMVSA------VHTGMMEVAFAKR----  144 (201)
Q Consensus        90 lDH~aI--A---YTP~~l~~~l-~~~~~~~l---la~~Gi-----~~~-~~~~l~~~------l~mGw~~i~~~~~----  144 (201)
                      +|+.+|  +   ++-..+.+.. +...+..+   +.+.++     ... ..+.+...      +.........+..    
T Consensus        84 ~DelPMl~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~t~~~~~~~~p~~~~~~f~~~~~~~~~~~~~~~~~~~~~  163 (262)
T PF05875_consen   84 LDELPMLWATLLFLYIVLTRRYSSPRYRLALPLLLFIYAVVVTVLYFVLDNPVFHQIAFASLVLLVILRSIYLIRRRVRD  163 (262)
T ss_pred             hhhhhHHHHHHHHHHHHhcccccCchhhHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999  2   3322222111 11122211   111111     111 13333222      2222222233332    


Q ss_pred             hhcCcccccCcHHHHHHHHHhhHHHhhcccc-c-----CCCc---------hhhHHHHHHHHHHHhhhhhc
Q 028928          145 ALNDPNLRMAHTVHKVSSLLGGVFFIADDVF-P-----ETPY---------LHAAWHLAAAVGVGTCNKLL  200 (201)
Q Consensus       145 l~~~~~~~~l~~~~~~lll~GG~~YtiG~if-~-----~~p~---------~H~IWHlfV~~ga~~~~~ll  200 (201)
                      -.++++.+++...+...++.|-.++.++..+ +     +.++         .|+.||+++.+|++...+..
T Consensus       164 ~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~  234 (262)
T PF05875_consen  164 ACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFV  234 (262)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            1246666667777777878888888888887 2     2223         79999999999999988754

Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane

>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]

Probab=98.99  E-value=9.2e-09  Score=90.68  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=90.7

Q ss_pred             chhhHHHHHhHHHHHHHh----c----------CCc-hhHHHHHHHHHHHHHHHHHHhhhhccch---hHHHHHHHhhhh
Q 028928           32 LLERVANVLTSLPFIALG----L----------QTP-RKNLNMTLYANSLVGVGVTSSLYHSSRG---KLRKYLRWADYA   93 (201)
Q Consensus        32 ~~ee~~N~~TH~i~li~~----~----------~~~-~~~~~~~vy~~sli~l~~~StlYH~~~~---~~k~~~r~lDH~   93 (201)
                      .-.|..|.+||.++.+..    .          .+. ...  ..+|-.+   ....|.+||.+..   +.++.+.++|++
T Consensus        47 ~hNEt~NiwTHLlg~i~f~~~~~~~~~~~~~~~~~~~~~~--~~lf~~~---~~~~S~~~H~~~~~s~~~~~~~~~lDY~  121 (286)
T KOG0748|consen   47 WHNETLNIWTHLLGFILFLFLLILFMPRVLLPVDSHLSEK--IFLFFLG---CLLLSSLYHLFSCHSEKVSRFFLKLDYA  121 (286)
T ss_pred             hhcccchhHHHHHHHHHHHHHHHHHcccccccccccchHH--HHHHHHH---HHHHHHHHHHHhcccHHHHHHHHHccHH
Confidence            345999999999954321    1          011 111  2222222   1122999999873   889999999999


Q ss_pred             hh-----h-hhHHHHHhhcCCch--hHHHHHH---HHh---h------cCCc--chHHHH--HHHH-HHHHHHHHHhhcC
Q 028928           94 MI-----A-TATVCLSRALRDEN--PKMLMAA---SAL---A------LPIQ--PLMVSA--VHTG-MMEVAFAKRALND  148 (201)
Q Consensus        94 aI-----A-YTP~~l~~~l~~~~--~~~lla~---~Gi---~------~~~~--~~l~~~--l~mG-w~~i~~~~~l~~~  148 (201)
                      +|     + +.|.... ++....  ....+..   .|+   +      +..+  +.....  +.+| +..++..-.+...
T Consensus       122 GIs~li~gS~~~~~yy-~f~c~~~~~~iy~~~~~~lgi~~~~~~l~~~~~~~~~r~~R~~~f~~~~~~~i~P~~h~~~~~  200 (286)
T KOG0748|consen  122 GISLLIIGSFLPIIYY-AFYCHPFFRLIYLPIILVLGLLAIFVSLSDKFRTPKRRPLRAGVFLLLGLSGILPLLHRLILF  200 (286)
T ss_pred             hhHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHheeechhhhCCccchhhHHHHHHHHHHhhccHhhhheeee
Confidence            99     2 5665543 444221  1111111   233   1      1111  222333  6666 3444444444322


Q ss_pred             cccccCcHHHHHHHHHhhHHHhhcccc--c----C-CC-------chhhHHHHHHHHHHHhhhh
Q 028928          149 PNLRMAHTVHKVSSLLGGVFFIADDVF--P----E-TP-------YLHAAWHLAAAVGVGTCNK  198 (201)
Q Consensus       149 ~~~~~l~~~~~~lll~GG~~YtiG~if--~----~-~p-------~~H~IWHlfV~~ga~~~~~  198 (201)
                      ...+......+.+....++.|.+|++|  -    | .|       ..|-|||++|++|+..+..
T Consensus       201 g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQifHv~vv~~a~~~~~  264 (286)
T KOG0748|consen  201 GGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIFHVLVVLAALFHLE  264 (286)
T ss_pred             cCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHHHHHHHHHHHHHHH
Confidence            211112345667778888999999998  2    2 34       2499999999999987653

>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]

Probab=98.27  E-value=6.7e-07  Score=78.03  Aligned_cols=175  Identities=20%  Similarity=0.226  Sum_probs=102.8

Q ss_pred             CCCcc-cccCCCC-CchhhHHHHHhHHHHHHHh---c-CCchhHHHHH--HHHHHHHHHHHHHhhhhccchhHHHHHHHh
Q 028928           19 LRPIR-GCIHGDL-HLLERVANVLTSLPFIALG---L-QTPRKNLNMT--LYANSLVGVGVTSSLYHSSRGKLRKYLRWA   90 (201)
Q Consensus        19 ~~~~~-~~~~~~~-~~~ee~~N~~TH~i~li~~---~-~~~~~~~~~~--vy~~sli~l~~~StlYH~~~~~~k~~~r~l   90 (201)
                      +.+++ +++|-.. ...-|.+|+.||.++++..   . +.+++.+.-.  +=++++..++++|.+||++.+   ..+|.+
T Consensus        16 tS~~dWCE~NY~~s~yIAEf~NT~sN~~fil~~~~~l~~~y~~~~e~~~~l~~v~~~ivgl~S~~fH~TL~---~~~Qll   92 (276)
T KOG2329|consen   16 TSTVDWCEENYAVSPYIAEFANTESNSPFILLAFIGLHCAYRQKLEKRAYLICVLFTIVGLGSMYFHMTLV---YKGQLL   92 (276)
T ss_pred             CchhhhhhhchhhhHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhHH---Hhheeh
Confidence            55566 5655433 3446999999999988542   2 3444444333  445668889999999999986   458999


Q ss_pred             hhhhh--h--------hhHHHHHh---hcCCchhHHHHHH----HHhhcCCcchHHHHHHHHHHHHHHHH------Hhhc
Q 028928           91 DYAMI--A--------TATVCLSR---ALRDENPKMLMAA----SALALPIQPLMVSAVHTGMMEVAFAK------RALN  147 (201)
Q Consensus        91 DH~aI--A--------YTP~~l~~---~l~~~~~~~lla~----~Gi~~~~~~~l~~~l~mGw~~i~~~~------~l~~  147 (201)
                      |+.++  +        |.|-.+.+   .-+....+.++.+    +|.-+. .|.+.. +..|-+.+....      ....
T Consensus        93 DElamiw~i~~~~~~cy~p~~~~~~~~~~~~tF~~~~~~~avt~~~l~~~-~p~~n~-v~~~~~s~~v~v~~~~~~~~~~  170 (276)
T KOG2329|consen   93 DELAMIWEIPLVSLLCYFPKFLVKETFSKRLTFILVLLILAVTIVGLSFL-EPIVNA-VALGFFSLPVAVVSMYEYYIHV  170 (276)
T ss_pred             hhhhHHHHHHHHHHhhcchhhhccccccchhHHHHHHHHHHHHHHHHHhh-ccHHHH-HHHHHHHHHHHHHhhhhheeec
Confidence            99998  2        55555431   0111222333222    333110 222211 233332222222      1125


Q ss_pred             CcccccCcHHHHHHHHHhhHHHhhcccc-------cC---CC-----chhhHHHHHHHHHHHhhhh
Q 028928          148 DPNLRMAHTVHKVSSLLGGVFFIADDVF-------PE---TP-----YLHAAWHLAAAVGVGTCNK  198 (201)
Q Consensus       148 ~~~~~~l~~~~~~lll~GG~~YtiG~if-------~~---~p-----~~H~IWHlfV~~ga~~~~~  198 (201)
                      +|+.+.++.....++..|-+++-.+..+       ++   .|     +.|++||+|...+.+..++
T Consensus       171 ~~~~r~l~~~~~i~~~v~~~~w~~D~~~c~f~~~~~~~l~~~~gi~l~~~a~Whv~s~~~~y~~~~  236 (276)
T KOG2329|consen  171 NDAKRNLGATGVILWLVGFIFWFLDRLLCSFWLRLRRYLALPLGILLELHAWWHVLTSIGSYRTIT  236 (276)
T ss_pred             cHhHhccCceeeeehhhhcchhhhhHHHHHHHHHhhhhhccHHHHHHHHHHHHhheecCChhHHHH
Confidence            6677777777566667777777777776       12   23     3599999999998866554

>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised

Probab=95.88  E-value=0.057  Score=44.84  Aligned_cols=147  Identities=18%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             hHHHHHhHHHHHHHh--cCCchhHHHHHHHHHHHHHHHHHHhhhhccc-hh--------HHHHHHHhhhhhh--h--hhH
Q 028928           35 RVANVLTSLPFIALG--LQTPRKNLNMTLYANSLVGVGVTSSLYHSSR-GK--------LRKYLRWADYAMI--A--TAT   99 (201)
Q Consensus        35 e~~N~~TH~i~li~~--~~~~~~~~~~~vy~~sli~l~~~StlYH~~~-~~--------~k~~~r~lDH~aI--A--YTP   99 (201)
                      -..=++||+.++-..  +-..+...-..+|..+|    .+|+.||+.. ..        .-+.+|-+|-.+-  +  -|.
T Consensus         8 ~l~l~lSnl~~lP~i~~a~rr~~~~Ea~v~~~tm----~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~~~vtl   83 (186)
T PF12036_consen    8 FLLLTLSNLAFLPTIYVAVRRRYHFEAFVYTFTM----FFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLSIWVTL   83 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHHHHHHH
Confidence            345577888866321  11122233355665554    6799999986 11        2133444443332  2  444


Q ss_pred             HHHHhhcCCchhHHH--HHHHHh-hc--CC-cchHHHH--HHHHHHHHHHHHHhhcCcccccCcHH----HHHHHHHhhH
Q 028928          100 VCLSRALRDENPKML--MAASAL-AL--PI-QPLMVSA--VHTGMMEVAFAKRALNDPNLRMAHTV----HKVSSLLGGV  167 (201)
Q Consensus       100 ~~l~~~l~~~~~~~l--la~~Gi-~~--~~-~~~l~~~--l~mGw~~i~~~~~l~~~~~~~~l~~~----~~~lll~GG~  167 (201)
                      .++. .++......+  +++..+ +.  .+ .+..++.  ++.|-+.+... -.+++.+.++..+.    ....++.|.+
T Consensus        84 ~~~a-~~~~~~~~~l~~~~~~~~ai~~~~~~~~~~~~~~Pi~~~~~i~~~~-w~~r~~~~~~~~~~~~~~~~~~l~~g~~  161 (186)
T PF12036_consen   84 CAMA-RLDEPLKSVLHYFGALVIAIFQQKDRWSLWNTIGPILIGLLILLVS-WLYRCRRRRRCYPPSWRRWLFYLLPGII  161 (186)
T ss_pred             HHhc-cCCHHHHHHHHHHHHHHHHHHHhhCcccchhhHHHHHHHHHHHHHH-HheecccCCccCChHHHHHHHHHHHHHH
Confidence            4442 3333332222  222222 11  12 2222333  55554444333 23343333444333    3445567777


Q ss_pred             HHhhccc-c--cCCC--chhhHHHH
Q 028928          168 FFIADDV-F--PETP--YLHAAWHL  187 (201)
Q Consensus       168 ~YtiG~i-f--~~~p--~~H~IWHl  187 (201)
                      +.++|.. |  ++++  +.|.+||+
T Consensus       162 ~~~~Gl~~f~et~dnY~~~HSlWHi  186 (186)
T PF12036_consen  162 FFILGLDLFLETNDNYRIVHSLWHI  186 (186)
T ss_pred             HHHHHHhHhhcCCCcEEEEeeeeeC
Confidence            8888877 3  3444  57999995

This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.

>KOG2970 consensus Predicted membrane protein [Function unknown]

Probab=83.52  E-value=17  Score=32.69  Aligned_cols=57  Identities=18%  Similarity=0.056  Sum_probs=36.2

Q ss_pred             HHHHHhHHHHHHHhc----CCc--hhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHhhhhhh
Q 028928           36 VANVLTSLPFIALGL----QTP--RKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMI   95 (201)
Q Consensus        36 ~~N~~TH~i~li~~~----~~~--~~~~~~~vy~~sli~l~~~StlYH~~~~~~k~~~r~lDH~aI   95 (201)
                      ..|-++|.-+++...    ++.  +......||+..-+.-...|+++|.-...   +=+++|+.+=
T Consensus       112 ~lNl~~h~~g~~~~r~~~~~~~~~r~~~l~~I~a~i~mnawiwSsvFH~rD~~---lTEklDYf~A  174 (319)
T KOG2970|consen  112 FLNLITHYKGLVKFRRPKKPNRPTRYERLWLIYAYIGMNAWIWSSVFHIRDVP---LTEKLDYFSA  174 (319)
T ss_pred             HHHHHHHHHHHhheecccCCCCcchhccchhhHHHHHHHHHHHHHhhhhcCCc---hHhhhhHHHH
Confidence            345556665554322    121  21255668888777788999999998752   2467898765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 61/230 (26%)

Query: 5   LHVSR-------RAWQQRPSCLRPIRG-CIHGDL----HLLERVANVLTS------LPF- 45
            +VSR       R        LRP +   I G L      +    +V  S      + F 
Sbjct: 129 YNVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFK 183

Query: 46  ---IALG-LQTPRKNLNM--TLYA----NSLVGVGVTSSL---YHSSRGKLRKYLRWADY 92
              + L    +P   L M   L      N       +S++    HS + +LR+ L+   Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 93  --AMIATATVCLSRALR--DENPKMLM------------AASALALPIQPLMVSAVHTGM 136
              ++    V  ++A    + + K+L+            AA+   + +    ++     +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 137 MEVAFAKRALNDPNLRMAHTVHKVSSLLGGVF--FIADDVFPET--PYLH 182
             +   K  L+     +   V   +     +    I D     T   + H
Sbjct: 304 KSL-LLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWKH 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00