Citrus Sinensis ID: 028931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MMISNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccEEEEEEEccccHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccccccccccccccccccccccccccHHHHHccccccHHccccEEEEEccccccccccccccccccEEEEEEEEEEcccHHHHHHHHHHHcccEHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHEEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEccccccHEEcc
Coil and Loop (DISEMBL)
mmisnttrillpsppptclatrqldhnplilrrdqagftsrtdfsrkLSHTHNEIFNSKKIISSAQkrgisppnnrnktnkkaEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILElmpyracyPIFKLIYSAAAngvhnmgfNEASLVIAKAEVneatsakrprpkaqgrvhmikrptchiTVVLrdmslddeyavs
Flexible Loop (DISEMBL)
mmisnttrillpsppptCLATRQLDHNPLILRRDqagftsrtdfsrklshthneifnskkiissaqkrgisppnnrnktnkkAEVSASArylhmsahkvrrviDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVneatsakrprpkaqgrvhmikrptchitvvlrdmslddeyavs
Low Complexity Region (SEG)
MMISNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAVS
Disordered region (IsUnstruct)
******************************************************************************************YLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKA******************VHMIKRPTCHITVVLRDM*********
Disordered Region (DISOPRED)
*********LLP***************PLILRRD*****************************************************SARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL*******
Disordered Region (DISEMBL)
MMISNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISPPNN***********ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVN**************RVHMIKRPTCHITVVLRDMSLDDEYAVS
Disordered Region (DISPRO)
***SNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRG**********NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMISNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q09G06	154	50S ribosomal protein L22	N/A	no	0.626	0.818	0.706	3e-48
A6MM76	156	50S ribosomal protein L22	N/A	no	0.611	0.788	0.699	8e-48
B1A974	142	50S ribosomal protein L22	N/A	no	0.631	0.894	0.669	6e-47
Q49KV9	160	50S ribosomal protein L22	N/A	no	0.601	0.756	0.721	3e-46
Q14FB8	132	50S ribosomal protein L22	N/A	no	0.562	0.856	0.725	1e-45
P24283	149	50S ribosomal protein L22	N/A	no	0.601	0.812	0.699	3e-45
Q09WX8	140	50S ribosomal protein L22	N/A	no	0.611	0.878	0.666	5e-45
Q2VEE1	155	50S ribosomal protein L22	N/A	no	0.592	0.767	0.697	6e-45
A4GYV0	132	50S ribosomal protein L22	yes	no	0.562	0.856	0.716	9e-45
A0A375	155	50S ribosomal protein L22	N/A	no	0.587	0.761	0.694	1e-44

>sp|Q09G06|RK22_PLAOC 50S ribosomal protein L22, chloroplastic OS=Platanus occidentalis GN=rpl22 PE=3 SV=1

 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 106/126 (84%)

Query: 75  NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
           N+ K N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+Y
Sbjct: 3   NKIKKNPDTEVYALGQHICMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVY 62

Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL 194
           SAAAN  HNMGFNEA L+I+KAEVNE  + KR +P+A+GR + IKRPTCHIT+VL+D+SL
Sbjct: 63  SAAANASHNMGFNEADLIISKAEVNEGPTMKRLKPRARGRSYPIKRPTCHITIVLKDISL 122

Query: 195 DDEYAV 200
           D+EY +
Sbjct: 123 DEEYLI 128

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
Platanus occidentalis (taxid: 4403)

>sp|A6MM76|RK22_BUXMI 50S ribosomal protein L22, chloroplastic OS=Buxus microphylla GN=rpl22 PE=3 SV=1

 Score =  189 bits (481), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 105/123 (85%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K N+ AEV A  +++ MSAHK RRVIDQIRGRSYEE LMILELMPYRACYPIFKL+YSAA
Sbjct: 3   KKNRDAEVYALGQHICMSAHKARRVIDQIRGRSYEEALMILELMPYRACYPIFKLVYSAA 62

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 197
           AN  HNMGFNEA  VI+KAEVN+ TS K+ +P+A+GR ++IKRPTCHIT+VL+D+ LD++
Sbjct: 63  ANASHNMGFNEADSVISKAEVNDGTSVKKLKPRARGRSYLIKRPTCHITIVLKDIYLDEK 122

Query: 198 YAV 200
           Y +
Sbjct: 123 YII 125

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Buxus microphylla (taxid: 153571)

>sp|B1A974|RK22_CARPA 50S ribosomal protein L22, chloroplastic OS=Carica papaya GN=rpl22 PE=3 SV=1

 Score =  186 bits (473), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 104/127 (81%)

Query: 75  NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
           ++ K     +V A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+Y
Sbjct: 3   SKRKKKSDTKVYALGQHIRMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVY 62

Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL 194
           SAAAN  HNMGFNE SLV++KAEVNE T+ K+ +P+A+GR + IKRPTCHIT+VL D ++
Sbjct: 63  SAAANASHNMGFNETSLVVSKAEVNEGTTVKKFKPRARGRSYPIKRPTCHITIVLEDTTV 122

Query: 195 DDEYAVS 201
            DEY +S
Sbjct: 123 YDEYVIS 129

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Carica papaya (taxid: 3649)

>sp|Q49KV9|RK22_EUCGG 50S ribosomal protein L22, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl22 PE=3 SV=1

 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 102/122 (83%), Gaps = 1/122 (0%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           RNK N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YS
Sbjct: 5   RNK-NLYGEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 195
           AAAN  HNMGFNEASLVI+KAEVNE T+ K+ +P+A+GR + IKRPTCHI +VL+D S  
Sbjct: 64  AAANASHNMGFNEASLVISKAEVNEGTTMKKLKPRARGRSYAIKRPTCHIRIVLKDKSFY 123

Query: 196 DE 197
           +E
Sbjct: 124 EE 125

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Eucalyptus globulus subsp. globulus (taxid: 71271)

>sp|Q14FB8|RK22_POPAL 50S ribosomal protein L22, chloroplastic OS=Populus alba GN=rpl22 PE=3 SV=1

 Score =  182 bits (462), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 98/113 (86%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E SAS  Y+ MSAHK RR+IDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HN
Sbjct: 11  EASASGFYISMSAHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHN 70

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 196
           MG NEASLVI+KAEVNE  + K+ +P+A+GR ++IKRPTCHI++VL D+S ++
Sbjct: 71  MGLNEASLVISKAEVNEGATMKKFKPRARGRSYLIKRPTCHISIVLEDISYEE 123

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Populus alba (taxid: 43335)

>sp|P24283|RK22_PELHO 50S ribosomal protein L22, chloroplastic OS=Pelargonium hortorum GN=rpl22-A PE=3 SV=2

 Score =  181 bits (459), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 104/123 (84%), Gaps = 2/123 (1%)

Query: 78  KTNKK--AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           K NKK   EVSA  +Y+ MS HK RRVIDQIRGRSYEETLMILELMPYRACYPI KLI S
Sbjct: 4   KKNKKRYTEVSALGKYIPMSTHKARRVIDQIRGRSYEETLMILELMPYRACYPILKLISS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 195
           AAANG+HNM F+E SL+I+KAEVNE  +AK+ +P+A+G+ + IKR TCHIT+VLRD+SL+
Sbjct: 64  AAANGIHNMNFDETSLIISKAEVNEGPTAKKFKPRAKGQSYPIKRSTCHITIVLRDISLN 123

Query: 196 DEY 198
           ++Y
Sbjct: 124 EKY 126

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Pelargonium hortorum (taxid: 4031)

>sp|Q09WX8|RK22_MORIN 50S ribosomal protein L22, chloroplastic OS=Morus indica GN=rpl22 PE=3 SV=1

 Score =  180 bits (457), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 104/123 (84%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           + +TN+  EV A A+Y+ MSAHK RRVIDQIRGRSY ETL+ILELMPYRACYPI KL+YS
Sbjct: 4   KRRTNRYTEVYAIAQYISMSAHKARRVIDQIRGRSYAETLIILELMPYRACYPILKLVYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 195
           AAAN  HNM FNEA+L+I+KAEVNE  + K+ +P+A+GR + IKRPTCHIT+VL+D+ ++
Sbjct: 64  AAANANHNMRFNEANLIISKAEVNEGNTVKKLKPRARGRGYPIKRPTCHITIVLKDLDVE 123

Query: 196 DEY 198
           +EY
Sbjct: 124 EEY 126

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Morus indica (taxid: 248361)

>sp|Q2VEE1|RK22_SOLTU 50S ribosomal protein L22, chloroplastic OS=Solanum tuberosum GN=rpl22 PE=3 SV=1

 Score =  180 bits (456), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 98/119 (82%)

Query: 81  KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANG 140
           KK EV A   ++ MSA K RRVIDQIRGRSYEETLMILELMPYRACYPI KL+YSAAAN 
Sbjct: 5   KKTEVYALGEHISMSADKARRVIDQIRGRSYEETLMILELMPYRACYPILKLVYSAAANA 64

Query: 141 VHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYA 199
            +NMG NE +LVI+KAEVNE T+ K+ +P+A+GR   IKR TCHIT+V++D+SLDDEY 
Sbjct: 65  SYNMGSNETNLVISKAEVNEGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLDDEYG 123

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Solanum tuberosum (taxid: 4113)

>sp|A4GYV0|RK22_POPTR 50S ribosomal protein L22, chloroplastic OS=Populus trichocarpa GN=rpl22 PE=3 SV=1

 Score =  179 bits (455), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 97/113 (85%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E SAS  Y+ MSAHK RR+IDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HN
Sbjct: 11  EASASGFYISMSAHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHN 70

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 196
           MG NEASLVI+KAEVNE  + K+ +P+A+GR ++IKR TCHI++VL D+S ++
Sbjct: 71  MGLNEASLVISKAEVNEGATMKKFKPRARGRSYLIKRQTCHISIVLEDISYEE 123

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Populus trichocarpa (taxid: 3694)

>sp|A0A375|RK22_COFAR 50S ribosomal protein L22, chloroplastic OS=Coffea arabica GN=rpl22 PE=3 SV=1

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 102/118 (86%)

Query: 81  KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANG 140
           KK EV A  +++ MSA K RRVIDQIRGRSYEETL+ILELMPYRACYPIFKL+YSAAAN 
Sbjct: 5   KKTEVYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANA 64

Query: 141 VHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 198
            +NM  N+A+L+I+KAEVNE T+ K+ +P+A+GR + IKRPTCHIT+V++D+SLDDEY
Sbjct: 65  SYNMSSNDANLLISKAEVNEGTTIKKFKPRARGRSYPIKRPTCHITIVMKDISLDDEY 122

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Coffea arabica (taxid: 13443)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
166245006	161	ribosomal protein L22 [Gnetum montanum]	0.592	0.739	0.758	3e-47
290487774	137	ribosomal protein L22 [Dillenia indica]	0.611	0.897	0.715	9e-47
166244977	156	ribosomal protein L22 [Buxus microphylla	0.611	0.788	0.707	1e-46
114329787	154	ribosomal protein L22 [Platanus occident	0.626	0.818	0.706	1e-46
149390579	156	ribosomal protein L22 [Buxus microphylla	0.611	0.788	0.699	4e-46
290487794	154	ribosomal protein L22 [Berberidopsis cor	0.597	0.779	0.733	5e-46
428696899	134	ribosomal protein L22 [Erodium cygnorum]	0.611	0.917	0.699	8e-46
428697485	132	ribosomal protein L22 [California macrop	0.611	0.931	0.699	1e-45
428697566	137	ribosomal protein L22 [Erodium moschatum	0.611	0.897	0.699	2e-45
166244932	159	ribosomal protein L22 [Trochodendron ara	0.611	0.773	0.699	2e-45

>gi|166245006|dbj|BAG06570.1| ribosomal protein L22 [Gnetum montanum]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 107/120 (89%), Gaps = 1/120 (0%)

Query: 81  KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANG 140
           KK EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAANG
Sbjct: 7   KKVEVYALGQHICMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANG 66

Query: 141 VHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD-EYA 199
           +HN+GFNEASLVI KAEVNE T+AKR +P+A+GR + IKRPTCHIT+ L+D+SLD+ EY+
Sbjct: 67  IHNLGFNEASLVIIKAEVNEGTAAKRLKPRARGRSYPIKRPTCHITIGLKDISLDEYEYS 126

Source: Gnetum montanum

Species: Gnetum montanum

Genus: Gnetum

Family: Gnetaceae

Order: Gnetales

Class: Gnetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290487774|gb|ADD30271.1| ribosomal protein L22 [Dillenia indica]

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 105/123 (85%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           ++K N+  EV A   Y+ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS
Sbjct: 4   KSKKNQNTEVYALGHYIRMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 195
           AAAN  HNMG NEA L+I+KAEVNE+T+ K+ +P+A+GR ++IKRPTCHIT+VL+D+SL 
Sbjct: 64  AAANASHNMGINEADLIISKAEVNESTTMKKLKPQARGRSYLIKRPTCHITIVLQDISLY 123

Query: 196 DEY 198
            EY
Sbjct: 124 KEY 126

Source: Dillenia indica

Species: Dillenia indica

Genus: Dillenia

Family: Dilleniaceae

Order: Dilleniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166244977|dbj|BAG06547.1| ribosomal protein L22 [Buxus microphylla]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 105/123 (85%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K N+ AEV A  +++ MSAHK RRVIDQIRGRSYEE LMILELMPYRACYPIFKL+YSAA
Sbjct: 3   KKNRDAEVYALGQHICMSAHKARRVIDQIRGRSYEEALMILELMPYRACYPIFKLVYSAA 62

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 197
           AN  HNMGFNEA  VI+KAEVNE TS K+ +P+A+GR ++IKRPTCHIT+VL+D+ LD++
Sbjct: 63  ANASHNMGFNEADSVISKAEVNEGTSVKKLKPRARGRSYLIKRPTCHITIVLKDIYLDEK 122

Query: 198 YAV 200
           Y +
Sbjct: 123 YII 125

Source: Buxus microphylla

Species: Buxus microphylla

Genus: Buxus

Family: Buxaceae

Order: Buxales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114329787|ref|YP_740605.1| ribosomal protein L22 [Platanus occidentalis] gi|122165998|sp|Q09G06.1|RK22_PLAOC RecName: Full=50S ribosomal protein L22, chloroplastic gi|114054425|gb|ABI49819.1| ribosomal protein L22 [Platanus occidentalis]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 106/126 (84%)

Query: 75  NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
           N+ K N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+Y
Sbjct: 3   NKIKKNPDTEVYALGQHICMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVY 62

Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL 194
           SAAAN  HNMGFNEA L+I+KAEVNE  + KR +P+A+GR + IKRPTCHIT+VL+D+SL
Sbjct: 63  SAAANASHNMGFNEADLIISKAEVNEGPTMKRLKPRARGRSYPIKRPTCHITIVLKDISL 122

Query: 195 DDEYAV 200
           D+EY +
Sbjct: 123 DEEYLI 128

Source: Platanus occidentalis

Species: Platanus occidentalis

Genus: Platanus

Family: Platanaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149390579|ref|YP_001294224.1| ribosomal protein L22 [Buxus microphylla] gi|215274734|sp|A6MM76.1|RK22_BUXMI RecName: Full=50S ribosomal protein L22, chloroplastic gi|146762324|gb|ABQ45288.1| ribosomal protein L22 [Buxus microphylla]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 105/123 (85%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K N+ AEV A  +++ MSAHK RRVIDQIRGRSYEE LMILELMPYRACYPIFKL+YSAA
Sbjct: 3   KKNRDAEVYALGQHICMSAHKARRVIDQIRGRSYEEALMILELMPYRACYPIFKLVYSAA 62

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 197
           AN  HNMGFNEA  VI+KAEVN+ TS K+ +P+A+GR ++IKRPTCHIT+VL+D+ LD++
Sbjct: 63  ANASHNMGFNEADSVISKAEVNDGTSVKKLKPRARGRSYLIKRPTCHITIVLKDIYLDEK 122

Query: 198 YAV 200
           Y +
Sbjct: 123 YII 125

Source: Buxus microphylla

Species: Buxus microphylla

Genus: Buxus

Family: Buxaceae

Order: Buxales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290487794|gb|ADD30281.1| ribosomal protein L22 [Berberidopsis corallina]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 102/120 (85%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAA
Sbjct: 3   KKNPNTEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAA 62

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 197
           AN  HNMGFNEA LVI+KAEVNE T+ K+ +P+A+GR   IKRPTCHIT+VL+D+SLD+E
Sbjct: 63  ANASHNMGFNEADLVISKAEVNEGTTVKKLKPRARGRSFPIKRPTCHITIVLKDISLDEE 122

Source: Berberidopsis corallina

Species: Berberidopsis corallina

Genus: Berberidopsis

Family: Berberidopsidaceae

Order: Berberidopsidales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428696899|ref|YP_007025200.1| ribosomal protein L22 [Erodium cygnorum]

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 107/123 (86%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           + KT +  EVSA  +Y+ MSA+KVRRVIDQIRGRSYEETLMILELMPYRAC PIFKLIYS
Sbjct: 3   KKKTKRYTEVSAFGQYISMSANKVRRVIDQIRGRSYEETLMILELMPYRACSPIFKLIYS 62

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 195
           AAANG+HNM F+E SL+I+KAEVNE T+ K+ +P+A+GR + IKR TCHIT+VLRD++L+
Sbjct: 63  AAANGIHNMNFDEKSLIISKAEVNEGTTVKKLKPRAKGRGYPIKRSTCHITIVLRDIALN 122

Query: 196 DEY 198
           ++Y
Sbjct: 123 EQY 125

Source: Erodium cygnorum

Species: Erodium cygnorum

Genus: Erodium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428697485|ref|YP_007025757.1| ribosomal protein L22 [California macrophylla]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 106/123 (86%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           + KT +  EVSA  +Y+ MS +KVRRVIDQIRGRSYEETLMILELMPYRACYPI KLIYS
Sbjct: 3   KKKTKRYTEVSALGQYISMSPNKVRRVIDQIRGRSYEETLMILELMPYRACYPILKLIYS 62

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 195
           AAANG+HNM F+E SL+I+KAEVNE T+ K+ +P+A+GR + IKR TCHIT+VLRD+SL+
Sbjct: 63  AAANGIHNMNFDEKSLIISKAEVNEGTTVKKLKPRAKGRGYPIKRSTCHITIVLRDISLN 122

Query: 196 DEY 198
           ++Y
Sbjct: 123 EQY 125

Source: California macrophylla

Species: California macrophylla

Genus: California

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428697566|ref|YP_007025849.1| ribosomal protein L22 [Erodium moschatum]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 106/123 (86%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           + KT +  EVSA  +Y+ MSA+KVRRVIDQIRGRSYEETLMILELMPYRAC PI KLIYS
Sbjct: 3   KKKTKRYTEVSALGQYISMSANKVRRVIDQIRGRSYEETLMILELMPYRACSPILKLIYS 62

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 195
           AAANG+HNM F+E SL+I+KAEVNE T+ K+ +P+A+GR + IKR TCHIT+VLRD+SL+
Sbjct: 63  AAANGIHNMNFDEKSLIISKAEVNEGTTVKKLKPRAKGRGYPIKRSTCHITIVLRDISLN 122

Query: 196 DEY 198
           ++Y
Sbjct: 123 EQY 125

Source: Erodium moschatum

Species: Erodium moschatum

Genus: Erodium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166244932|dbj|BAG06511.1| ribosomal protein L22 [Trochodendron aralioides] gi|290487816|gb|ADD30292.1| ribosomal protein L22 [Trochodendron aralioides]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 104/123 (84%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K N   EV A  +++ MSAHK RRVIDQIRGRSYEETL ILELMPYRACYPIFKL+YSAA
Sbjct: 6   KKNPDTEVYALGQHICMSAHKARRVIDQIRGRSYEETLTILELMPYRACYPIFKLVYSAA 65

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 197
           AN  HNMGFNEA  VI+KAEVNE TS K+ +P+A+GR + IKRPTCHIT+VL+D+S+D++
Sbjct: 66  ANASHNMGFNEADSVISKAEVNEGTSVKKLKPRARGRSYPIKRPTCHITIVLKDISIDED 125

Query: 198 YAV 200
           Y++
Sbjct: 126 YSI 128

Source: Trochodendron aralioides

Species: Trochodendron aralioides

Genus: Trochodendron

Family: Trochodendraceae

Order: Trochodendrales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
UNIPROTKB|O62952	142	rpl22 "50S ribosomal protein L	0.587	0.830	0.576	2.3e-32
UNIPROTKB|P0C444	149	rpl22 "50S ribosomal protein L	0.641	0.865	0.503	4.5e-27
UNIPROTKB|P0C445	149	rpl22 "50S ribosomal protein L	0.641	0.865	0.503	4.5e-27
UNIPROTKB|P0C446	149	rpl22 "50S ribosomal protein L	0.641	0.865	0.503	4.5e-27
UNIPROTKB|Q6END4	149	rpl22 "50S ribosomal protein L	0.641	0.865	0.503	4.5e-27
UNIPROTKB|P61181	197	rplV "50S ribosomal protein L2	0.597	0.609	0.433	7.2e-20
TIGR_CMR|CHY_2304	113	CHY_2304 "ribosomal protein L2	0.537	0.955	0.425	2.5e-17
TIGR_CMR|CBU_0243	115	CBU_0243 "ribosomal protein L2	0.567	0.991	0.359	1.1e-14
TIGR_CMR|BA_0115	113	BA_0115 "ribosomal protein L22	0.537	0.955	0.398	2.3e-14
TIGR_CMR|SO_0236	110	SO_0236 "ribosomal protein L22	0.537	0.981	0.407	6.2e-14

UNIPROTKB|O62952 rpl22 "50S ribosomal protein L22, chloroplastic" [Picea abies (taxid:3329)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 68/118 (57%), Positives = 92/118 (77%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             E+ A AR + MSAHK R+VI+QIRG SY + LMILELMPY ACYPI +LI+SAAAN  HN
Sbjct:    12 EIRALARNIRMSAHKARKVINQIRGCSYGQALMILELMPYGACYPISQLIHSAAANANHN 71

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAVS 201
             MG N+A+L++++ EVNE    KR +P+AQGR + I++PTCHIT+VL ++S  ++  +S
Sbjct:    72 MGLNKANLLVSRVEVNEGAVFKRVQPRAQGRGYPIQKPTCHITIVLEEISRSNDPIMS 129

GO:0043253 "chloroplast ribosome" evidence=NAS

UNIPROTKB|P0C444 rpl22 "50S ribosomal protein L22, chloroplastic" [Oryza sativa (taxid:4530)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/131 (50%), Positives = 86/131 (65%)

Query:    59 KKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
             KK  S  +K     P +R    K   V  + + +HMS  KV+RV+D+IR R YEET+MIL
Sbjct:    14 KKKKSGLRKLARKVPTDR--LLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMIL 71

Query:   119 ELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMI 178
              LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR   I
Sbjct:    72 NLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPI 131

Query:   179 KRPTCHITVVL 189
             K+  CHIT+VL
Sbjct:   132 KKTMCHITIVL 142

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C445 rpl22 "50S ribosomal protein L22, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/131 (50%), Positives = 86/131 (65%)

Query:    59 KKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
             KK  S  +K     P +R    K   V  + + +HMS  KV+RV+D+IR R YEET+MIL
Sbjct:    14 KKKKSGLRKLARKVPTDR--LLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMIL 71

Query:   119 ELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMI 178
              LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR   I
Sbjct:    72 NLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPI 131

Query:   179 KRPTCHITVVL 189
             K+  CHIT+VL
Sbjct:   132 KKTMCHITIVL 142

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C446 rpl22 "50S ribosomal protein L22, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/131 (50%), Positives = 86/131 (65%)

Query:    59 KKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
             KK  S  +K     P +R    K   V  + + +HMS  KV+RV+D+IR R YEET+MIL
Sbjct:    14 KKKKSGLRKLARKVPTDR--LLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMIL 71

Query:   119 ELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMI 178
              LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR   I
Sbjct:    72 NLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPI 131

Query:   179 KRPTCHITVVL 189
             K+  CHIT+VL
Sbjct:   132 KKTMCHITIVL 142

GO:0009536 "plastid" evidence=IC

UNIPROTKB|Q6END4 rpl22 "50S ribosomal protein L22, chloroplastic" [Oryza nivara (taxid:4536)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/131 (50%), Positives = 86/131 (65%)

Query:    59 KKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
             KK  S  +K     P +R    K   V  + + +HMS  KV+RV+D+IR R YEET+MIL
Sbjct:    14 KKKKSGLRKLARKVPTDR--LLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMIL 71

Query:   119 ELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMI 178
              LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR   I
Sbjct:    72 NLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPI 131

Query:   179 KRPTCHITVVL 189
             K+  CHIT+VL
Sbjct:   132 KKTMCHITIVL 142

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P61181 rplV "50S ribosomal protein L22" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 52/120 (43%), Positives = 71/120 (59%)

Query:    78 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
             K  +     A AR++ +S  K RRVID +RGRS  + L IL   P  A  P+ K+I SAA
Sbjct:     6 KATEYPSAVAKARFVRVSPRKARRVIDLVRGRSVSDALDILRWAPQAASGPVAKVIASAA 65

Query:   138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 197
             AN  +N G + A+LV+A    ++  +AKR RP+AQGR   I+R T HITVV+      D+
Sbjct:    66 ANAQNNGGLDPATLVVATVYADQGPTAKRIRPRAQGRAFRIRRRTSHITVVVESRPAKDQ 125

GO:0005618 "cell wall" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|CHY_2304 CHY_2304 "ribosomal protein L22" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 46/108 (42%), Positives = 68/108 (62%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             E  A A+Y+ +S  K R+VID IRG+  EE L IL   P +A Y I K++ SA AN  +N
Sbjct:     2 EARAVAKYIRISPRKARQVIDLIRGKDVEEALAILRYTPKKASYFIEKVLRSAIANAENN 61

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
                ++ +L +AKA V++  + KR  P+AQGRV + +  T HIT+V+ +
Sbjct:    62 HDMSKENLYVAKAYVDQGPTLKRYNPRAQGRVDLWRVRTSHITIVVAE 109

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0243 CBU_0243 "ribosomal protein L22" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/114 (35%), Positives = 66/114 (57%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             EV+A  +Y  +SA K R V DQ+RG   E+ + +L     +A   + K++ SA AN  HN
Sbjct:     2 EVAAKLKYARISAQKARLVADQVRGLGAEQAVNLLRFSNKKAAALMKKVLDSAIANAEHN 61

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 197
              G +   L ++   V+E  SA+R   +A+GR + I + TCHITV + D  ++++
Sbjct:    62 EGADIDELKVSTVMVDEGPSARRFHARARGRANQILKRTCHITVKVSDSQVEND 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|BA_0115 BA_0115 "ribosomal protein L22" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 43/108 (39%), Positives = 61/108 (56%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             +  A AR + ++  KVR V+D IRG+   E + IL   P  A   + K++ SA AN  HN
Sbjct:     2 QAKAVARTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEHN 61

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
                +  SLV+ K  V+E  + KR RP+A GR   I + T HITVV+ +
Sbjct:    62 YEMDINSLVVEKVFVDEGPTLKRFRPRAMGRASQINKRTSHITVVVSE 109

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SO_0236 SO_0236 "ribosomal protein L22" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 44/108 (40%), Positives = 58/108 (53%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             EV A  R+   SA K R V DQIRG    + L IL   P +A   + K++ SA AN  HN
Sbjct:     2 EVLAKHRFARTSAQKARLVADQIRGLPVAKALEILTFSPKKAAVLVKKVLDSAIANAEHN 61

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
              G +   L +    V+E  + KR  P+A+GR   I + T HITVV+ D
Sbjct:    62 EGADIDELKVGAVFVDEGPTMKRIMPRAKGRADRIMKRTSHITVVVSD 109

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q49KV9	RK22_EUCGG	No assigned EC number	0.7213	0.6019	0.7562	N/A	no
Q09G06	RK22_PLAOC	No assigned EC number	0.7063	0.6268	0.8181	N/A	no
P56795	RK22_ARATH	No assigned EC number	0.6341	0.6119	0.7687	yes	no
A4GYV0	RK22_POPTR	No assigned EC number	0.7168	0.5621	0.8560	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
CHL00034	117	CHL00034, rpl22, ribosomal protein L22	6e-68
PRK00565	112	PRK00565, rplV, 50S ribosomal protein L22; Reviewe	3e-42
pfam00237	105	pfam00237, Ribosomal_L22, Ribosomal protein L22p/L	4e-41
cd00336	105	cd00336, Ribosomal_L22, Ribosomal protein L22/L17e	2e-37
COG0091	120	COG0091, RplV, Ribosomal protein L22 [Translation,	1e-33
TIGR01044	103	TIGR01044, rplV_bact, ribosomal protein L22, bacte	4e-28
PRK12279	311	PRK12279, PRK12279, 50S ribosomal protein L22/unkn	6e-10
TIGR01038	150	TIGR01038, L22_arch, ribosomal protein L22(archaea	3e-04

>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22

 Score =  202 bits (517), Expect = 6e-68
 Identities = 79/116 (68%), Positives = 93/116 (80%)

Query: 77  NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSA 136
            K     EV A A+Y+ MSAHK RRVIDQIRGRSYEE LMILE MPYRACYPI KL+YSA
Sbjct: 2   MKKKSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSA 61

Query: 137 AANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 192
           AAN  HNMG N+A+L I+KAEV+E  + KR RP+AQGR + IK+PTCHIT+VL+D+
Sbjct: 62  AANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKPTCHITIVLKDI 117

Length = 117

>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed

 Score =  137 bits (348), Expect = 3e-42
 Identities = 46/108 (42%), Positives = 67/108 (62%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  K R V D IRG+  EE L IL+  P +A   + K++ SA AN  +N
Sbjct: 2   EAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            G +  +LV+ +A V+E  + KR RP+A+GR   I++ T HITVV+ +
Sbjct: 62  HGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAE 109

Length = 112

>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e

 Score =  134 bits (340), Expect = 4e-41
 Identities = 47/105 (44%), Positives = 66/105 (62%)

Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A ARY+ +S  K R V D IRG+S EE L ILE +P +A   I KL+ SA AN  +N G 
Sbjct: 1   AVARYIRISPKKARLVADLIRGKSVEEALAILEFVPKKAAKIILKLLKSAVANAENNKGL 60

Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
           +  +L I +  V++  + KR RP+A+GR   I++ T HIT+VL +
Sbjct: 61  DPDNLYIKEIFVDKGPTLKRFRPRARGRATPIRKRTSHITIVLSE 105

This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Length = 105

>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e

 Score =  124 bits (315), Expect = 2e-37
 Identities = 46/105 (43%), Positives = 61/105 (58%)

Query: 85  VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNM 144
             A  RYL +S  K R V   IRG S +E L  LE +P +A   I KL+ SA AN  +N 
Sbjct: 1   AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNG 60

Query: 145 GFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
             +   L I   +VN+  + KR RP+A+GR + I++ TCHITVVL
Sbjct: 61  LDDPDKLYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL 105

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome. Length = 105

>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

 Score =  115 bits (291), Expect = 1e-33
 Identities = 46/114 (40%), Positives = 65/114 (57%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K   + E  A ARYL +S  K R V D IRG+   E L ILE +P +A   + K++ SA 
Sbjct: 4   KVEPEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAI 63

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
           AN  +N G +   LV++   V++    KR  P+A+GR   I + T HITVV+R+
Sbjct: 64  ANAENNKGLDPDKLVVSHIAVDKGPVLKRFMPRARGRATRINKRTSHITVVVRE 117

Length = 120

>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type

 Score =  101 bits (253), Expect = 4e-28
 Identities = 44/103 (42%), Positives = 62/103 (60%)

Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A AR++ +S  K R V D IRG+S  + L IL   P +A   I K++ SA AN  HN G 
Sbjct: 1   AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGL 60

Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
           +  +LV+    V+E  + KR RP+A+GR   I++ T HITVV+
Sbjct: 61  DADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITVVV 103

This model decribes bacterial and chloroplast ribosomal protein L22 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 103

>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional

 Score = 57.0 bits (137), Expect = 6e-10
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 90  RYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEA 149
           R +H+S  K   VID +R +   E + IL   P +    + KL+ SA +N  HN    + 
Sbjct: 8   RNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHNSKDMDP 67

Query: 150 S-LVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
           S L I K   N+  + KR  P+A+G    + + T H+ +VL D
Sbjct: 68  SKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSD 110

Length = 311

>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 38/151 (25%)

Query: 73  PNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE-------LMPYR- 124
           P +  K+ K     A  R L +S    R     IRG   ++    LE        +P+R 
Sbjct: 5   PEDPTKSAK-----ARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRR 59

Query: 125 ------------------ACYP------IFKLIYSAAANGVHNMGFNEASLVIAKAEVNE 160
                               YP      I K++ +A AN     G +   LVI   + N+
Sbjct: 60  YNGKVGHRRGLKEWGWTAGRYPVKAAKFILKVLQNAEANA-EYKGLDVEKLVIIHIQANK 118

Query: 161 ATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
               +R  P+A GR         HI +V+ +
Sbjct: 119 GPKIRRWMPRAFGRATPYNSSPTHIELVVEE 149

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
CHL00034	117	rpl22 ribosomal protein L22	100.0
PRK00565	112	rplV 50S ribosomal protein L22; Reviewed	100.0
COG0091	120	RplV Ribosomal protein L22 [Translation, ribosomal	100.0
TIGR01044	103	rplV_bact ribosomal protein L22, bacterial type. T	100.0
PF00237	105	Ribosomal_L22: Ribosomal protein L22p/L17e; InterP	100.0
cd00336	105	Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17	100.0
PRK04223	153	rpl22p 50S ribosomal protein L22P; Reviewed	100.0
PRK12279	311	50S ribosomal protein L22/unknown domain fusion pr	100.0
TIGR01038	150	L22_arch ribosomal protein L22(archaeal)/L17(eukar	100.0
PTZ00178	181	60S ribosomal protein L17; Provisional	100.0
KOG1711	218	consensus Mitochondrial/chloroplast ribosomal prot	99.97
KOG3353	175	consensus 60S ribosomal protein L22 [Translation,	99.48

>CHL00034 rpl22 ribosomal protein L22

Probab=100.00  E-value=5.7e-41  Score=263.66  Aligned_cols=111  Identities=70%  Similarity=1.099  Sum_probs=108.9

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecC
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNE  160 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~k  160 (201)
                      ++++++|..+++++||+|+++||++||||+++||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||+++|||+
T Consensus         6 ~~~~~~A~~~~ir~SpkK~r~va~~IRG~~v~~A~~~L~~~pkk~a~~i~klL~sA~aNA~~~~gld~d~L~I~~i~v~~   85 (117)
T CHL00034          6 STTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSAAANASHNMGLNKANLFISKAEVDE   85 (117)
T ss_pred             CCceEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHccCCCccceEEEEEEECC
Confidence            46889999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             CcccCCCCcCCCCcccccccCceeEEEEEEe
Q 028931          161 ATSAKRPRPKAQGRVHMIKRPTCHITVVLRD  191 (201)
Q Consensus       161 G~~lKRi~pRArGRa~~i~kr~sHItVvL~E  191 (201)
                      ||++||++||||||++++++++|||+|+|+|
T Consensus        86 G~~~KR~~prArGRa~~i~k~~sHI~Vvl~e  116 (117)
T CHL00034         86 GPTLKRFRPRAQGRSYPIKKPTCHITIVLKD  116 (117)
T ss_pred             CCccCCCCcccCCCCCcccCCCccEEEEEec
Confidence            9999999999999999999999999999987

>PRK00565 rplV 50S ribosomal protein L22; Reviewed

Probab=100.00  E-value=4.7e-41  Score=261.80  Aligned_cols=111  Identities=41%  Similarity=0.593  Sum_probs=108.5

Q ss_pred             cEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCc
Q 028931           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (201)
Q Consensus        83 ~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~  162 (201)
                      |+++|..+++++||+|+++||++||||+++||+.||+|+|+|+|+.|+++|+||.+||++++|+|+++|||+++|||+||
T Consensus         1 ~~~~A~~~~~~~SpkK~~~v~~~IrG~~v~~A~~~L~~~pkk~a~~i~k~L~sA~aNA~~~~g~d~~~L~I~~~~v~~G~   80 (112)
T PRK00565          1 MEAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENNHGLDIDNLVVKEAYVDEGP   80 (112)
T ss_pred             CceEEEeCccccCHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHHHHhccCCChhHeEEEEEEECCCC
Confidence            46899999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             ccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          163 SAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       163 ~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      ++||++||||||++++++++|||+|+|+|++
T Consensus        81 ~~Kr~~~rArGR~~~i~k~~~hi~vvL~e~~  111 (112)
T PRK00565         81 TLKRFRPRARGRASRIRKRTSHITVVVAEKE  111 (112)
T ss_pred             ccCCCCCCcCCCCCccccCCccEEEEEEecC
Confidence            9999999999999999999999999999965

>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-41  Score=267.10  Aligned_cols=113  Identities=40%  Similarity=0.577  Sum_probs=110.2

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecC
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNE  160 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~k  160 (201)
                      +.++++|..+++++||+|+++||++||||++++|+.+|+|+|+|+|+.|+|+|+||++||++|+|||+|+|||.|||||+
T Consensus         7 ~~~~akA~~r~~riSpkk~r~Va~~IrG~~v~~A~~~L~~~pkKaa~~v~KvL~sA~aNAe~n~gLd~d~L~V~~i~v~~   86 (120)
T COG0091           7 PEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAIANAENNKGLDPDKLVVSHIAVDK   86 (120)
T ss_pred             hhhhhHhhhccCcCChHHHHHHHHHHcCCcHHHHHHHHHhChHHHHHHHHHHHHHHHhhHHhccCCChHHEEEEEEEeCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          161 ATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       161 G~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      ||++||++||||||+++|.+++|||+|+|+|.+
T Consensus        87 gp~lKR~~pRA~GRa~~i~k~tshItvvv~e~~  119 (120)
T COG0091          87 GPVLKRFMPRARGRATRINKRTSHITVVVREKE  119 (120)
T ss_pred             CceeeeecccccCccccccCCCceEEEEEeecC
Confidence            999999999999999999999999999999965

>TIGR01044 rplV_bact ribosomal protein L22, bacterial type

Probab=100.00  E-value=5.8e-40  Score=252.48  Aligned_cols=103  Identities=43%  Similarity=0.616  Sum_probs=100.7

Q ss_pred             EEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCC
Q 028931           87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKR  166 (201)
Q Consensus        87 A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKR  166 (201)
                      |..+++++||+|+++||++||||+++||+.||+|+|+|+|+.|+|+|+||.+||++++|+|+|+|||+|+|||+||++||
T Consensus         1 a~~r~~r~SpkK~~~va~~IrG~~v~~A~~~L~f~pkk~a~~i~klL~sA~aNA~~~~~ld~~~L~I~~~~v~~G~~~kr   80 (103)
T TIGR01044         1 AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGLDADNLVVVTIFVDEGPTLKR   80 (103)
T ss_pred             CcccccccCHHHHHHHHHHHcCCcHHHHHHHHhhCCHhHHHHHHHHHHHHHHHHHHccCCChHheEEEEEEECCCCcccC
Confidence            46789999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             CCcCCCCcccccccCceeEEEEE
Q 028931          167 PRPKAQGRVHMIKRPTCHITVVL  189 (201)
Q Consensus       167 i~pRArGRa~~i~kr~sHItVvL  189 (201)
                      ++||||||++++++++|||+|+|
T Consensus        81 ~~~rarGRa~~i~k~~~hi~vvl  103 (103)
T TIGR01044        81 IRPRAKGRASRIRKRTSHITVVV  103 (103)
T ss_pred             CCCCCCCCCCcccCCCccEEEeC
Confidence            99999999999999999999986

This model decribes bacterial and chloroplast ribosomal protein L22.

>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.8e-38  Score=242.25  Aligned_cols=105  Identities=40%  Similarity=0.568  Sum_probs=102.0

Q ss_pred             EEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCC
Q 028931           87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKR  166 (201)
Q Consensus        87 A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKR  166 (201)
                      |..+++++||+|++++|++|+||+++||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||+++|||+|+++||
T Consensus         1 A~~~~i~~S~kk~~~v~~~Irg~~v~~A~~~L~~~~~k~a~~i~k~L~~a~~nA~~~~g~d~~~L~I~~~~v~~g~~~kr   80 (105)
T PF00237_consen    1 AKLRNIRISPKKLREVARLIRGMSVDEAIAQLKFVPKKAAKFILKLLKSAIANAENNKGLDPDNLYISEIWVNKGPYLKR   80 (105)
T ss_dssp             EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHCTSTCGGEEEEEEEEEEEEEEEE
T ss_pred             CccccccCCHHHHHHHHHHHcCCCHHHHHHHHHhCcHHHHHHHHhhHHHHHhhcccccccccCceEEEEEEEEecccccC
Confidence            57889999999999999999999999999999999999999999999999999997899999999999999999999999


Q ss_pred             CCcCCCCcccccccCceeEEEEEEe
Q 028931          167 PRPKAQGRVHMIKRPTCHITVVLRD  191 (201)
Q Consensus       167 i~pRArGRa~~i~kr~sHItVvL~E  191 (201)
                      ++||||||++++++++|||+|+|+|
T Consensus        81 ~~~rArGR~~~~~k~~~hi~vvl~E  105 (105)
T PF00237_consen   81 IRPRARGRAGPIRKRTSHITVVLKE  105 (105)
T ss_dssp             EEEECTTEEEEEEEEEEEEEEEEEE
T ss_pred             CCcCcCCCccCeecCceEEEEEEeC
Confidence            9999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CD6_R 1Q7Y_S 1VQ6_R 1YI2_R 1QVF_Q 3CCR_R 3CCU_R 3CCL_R 1YJ9_R 3CCQ_R ....

>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e

Probab=100.00  E-value=5.7e-37  Score=234.80  Aligned_cols=105  Identities=44%  Similarity=0.602  Sum_probs=102.1

Q ss_pred             EEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCccc
Q 028931           85 VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSA  164 (201)
Q Consensus        85 ~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~l  164 (201)
                      ++|..+++++||+|+++|+++||||+++||+.||+|+|+|+|+.|+++|+||.+||++++++|+++|||+++|||+||++
T Consensus         1 ~~a~~~~i~~S~kK~~~v~~~Irg~~v~~A~~~L~~~~kk~a~~i~k~l~sa~~nA~~~~~~~~~~L~I~~~~v~~g~~~   80 (105)
T cd00336           1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNGLDDPDKLYIKHIQVNKGPTL   80 (105)
T ss_pred             CEEEEccCccCHHHHHHHHHHHcCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHhHHHcCCCCccceEEEEEEECCCCcc
Confidence            36889999999999999999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             CCCCcCCCCcccccccCceeEEEEE
Q 028931          165 KRPRPKAQGRVHMIKRPTCHITVVL  189 (201)
Q Consensus       165 KRi~pRArGRa~~i~kr~sHItVvL  189 (201)
                      ||++||||||++++++++|||+|+|
T Consensus        81 kr~~~rarGR~~~~~k~~~hi~ivl  105 (105)
T cd00336          81 KRRRPRARGRANPIRKRTCHITVVL  105 (105)
T ss_pred             cCCCcCCCCCCcccccCceeEEEeC
Confidence            9999999999999999999999986

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.

>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed

Probab=100.00  E-value=8.5e-36  Score=244.09  Aligned_cols=112  Identities=27%  Similarity=0.358  Sum_probs=108.7

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhh------------------------------CCCcchhHHH
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL------------------------------MPYRACYPIF  130 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~f------------------------------spKKaA~~V~  130 (201)
                      .+++++|..+++++||+|+++||++||||++++|+.+|+|                              +|+|+|+.|+
T Consensus        12 ~~~~akA~~~~~rvS~kk~r~va~~IRG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~~~~gr~PkKaa~~i~   91 (153)
T PRK04223         12 PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHRKGIDGWPAGRYPVKAAKAFL   91 (153)
T ss_pred             CCceEEEEeCCCccChHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccCCCchHHHHHHH
Confidence            4689999999999999999999999999999999999999                              9999999999


Q ss_pred             HHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          131 KLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       131 KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      |+|+||.+||++ +|+|.|+|||++++||+||++||++|||+||++++.+++|||+|+|+|.+
T Consensus        92 KlL~sA~aNA~~-~gld~d~L~I~~i~v~kg~~~kR~~prA~GRa~~~~k~~sHI~Iil~e~~  153 (153)
T PRK04223         92 KLLENAEANAEY-KGLDTEKLVIVHIAAHKGRVIKGYMPRAFGRATPKNTETVNIEVILEEVE  153 (153)
T ss_pred             HHHHHHHHHHHh-cCCChhHeEEEEEEECCCCCCCCcCcccCCCCCcccCCCceEEEEEEeCC
Confidence            999999999987 69999999999999999999999999999999999999999999999853

>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional

Probab=100.00  E-value=3.3e-36  Score=269.28  Aligned_cols=115  Identities=28%  Similarity=0.382  Sum_probs=111.0

Q ss_pred             cEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhch-hcCCCCCCCeEEEEEEecCC
Q 028931           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGV-HNMGFNEASLVIAKAEVNEA  161 (201)
Q Consensus        83 ~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~-~~~gld~d~L~I~ea~V~kG  161 (201)
                      |+++|..+++++||+|+|+||++||||++++|+.+|+|+|+|+|..|+++|+||.+||+ +|+|||.|+|||.+|+||+|
T Consensus         1 M~akA~~r~iriSpkK~R~Va~~IRGk~v~~Al~~L~~~PkKaA~~I~KlLkSA~ANAe~~n~gld~d~L~I~~~~VdkG   80 (311)
T PRK12279          1 MTNKVIQRNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHNSKDMDPSKLYIYKIVANQG   80 (311)
T ss_pred             CceEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcCCChhHeEEEEEEECCC
Confidence            57999999999999999999999999999999999999999999999999999999999 67999999999999999999


Q ss_pred             cccCCCCcCCCCcccccccCceeEEEEEEecCCCCc
Q 028931          162 TSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE  197 (201)
Q Consensus       162 ~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~~~~~  197 (201)
                      |++||++||||||+++|++++|||+|+|+|..++++
T Consensus        81 p~lKR~~PRArGRA~~i~KrtsHItIvl~e~~~~~~  116 (311)
T PRK12279         81 PTMKRTLPRAKGSADQLFKRTTHLEIVLSDDVNERE  116 (311)
T ss_pred             CcccCCCCccCCCCCcccCCCccEEEEEecCCchhh
Confidence            999999999999999999999999999999877654

>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

Probab=100.00  E-value=7.4e-36  Score=243.75  Aligned_cols=111  Identities=27%  Similarity=0.365  Sum_probs=107.6

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhh--------------------------------CCCcchhH
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYP  128 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~f--------------------------------spKKaA~~  128 (201)
                      +.++++|..+++++||+|+++||++||||++++|+.+|+|                                +|+|+|+.
T Consensus         8 ~~~~akA~~~~~riS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~~~~~~gR~P~Kaa~~   87 (150)
T TIGR01038         8 PTKSAKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLKEWGWTAGRYPVKAAKF   87 (150)
T ss_pred             CCeeEEEEeCCCcccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccCCCchHHHHH
Confidence            3578999999999999999999999999999999999999                                89999999


Q ss_pred             HHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEec
Q 028931          129 IFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM  192 (201)
Q Consensus       129 V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~  192 (201)
                      |+++|+||.+||++ +|+|.|+|||++++||+||++||++|||+||+++|++++|||+|+|+|+
T Consensus        88 i~klL~sA~aNA~~-~gld~d~L~I~~i~vnkg~~~kR~~prA~GRa~~~~k~~~HI~Iil~e~  150 (150)
T TIGR01038        88 ILKVLQNAEANAEY-KGLDVEKLVIIHIQANKGPKIRRWMPRAFGRATPYNSSPTHIELVVEEK  150 (150)
T ss_pred             HHHHHHHHHHHHHh-cCCChhHeEEEEEEECCCCccCCCCCccCCCCCcccCCCceEEEEEecC
Confidence            99999999999987 7999999999999999999999999999999999999999999999874

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22.

>PTZ00178 60S ribosomal protein L17; Provisional

Probab=100.00  E-value=2.7e-35  Score=246.58  Aligned_cols=112  Identities=22%  Similarity=0.347  Sum_probs=108.6

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhh--------------------------------CCCcchhH
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYP  128 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~f--------------------------------spKKaA~~  128 (201)
                      ++++++|..+++++||+|+++||++||||++++|+++|+|                                +|+|+|..
T Consensus        11 ~~~~akA~~~~~riSpkk~r~Va~~IRGk~v~~A~~~L~~Vi~~k~~VPf~r~~~~vgh~~~~~~~~~~~GR~P~KaA~~   90 (181)
T PTZ00178         11 PSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKEFGHTQGRWPEKSVKF   90 (181)
T ss_pred             CCceEEEEeCCcccchHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeecCCccccccccccccccCcCcHHHHHH
Confidence            5789999999999999999999999999999999999997                                89999999


Q ss_pred             HHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          129 IFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       129 V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      |+|+|+||.+||+ ++|+|+|+|||.+|.||+||++||++|||+||+++|++++|||+|+|+|.+
T Consensus        91 i~KlL~SA~aNAe-~~gld~d~L~I~~i~v~kG~~lKR~~pRA~GRA~~i~k~t~HI~Ivl~e~~  154 (181)
T PTZ00178         91 VLSLLKNAEANAE-AKGLDVEKLVISHVQVNRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKD  154 (181)
T ss_pred             HHHHHHHHHHHHH-hcCCChhHeEEEEEEECCCcccCCCCCccCCCcCcccCCceeEEEEEEEcc
Confidence            9999999999999 579999999999999999999999999999999999999999999999864

>KOG1711 consensus Mitochondrial/chloroplast ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.8e-32  Score=231.65  Aligned_cols=137  Identities=35%  Similarity=0.444  Sum_probs=125.1

Q ss_pred             ccccc-ccccchhhhhcCCCCCCCcccCCCCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHH
Q 028931           53 NEIFN-SKKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFK  131 (201)
Q Consensus        53 ~~~f~-~~~~i~~~~~~g~~~~~~~~~~~~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~K  131 (201)
                      ++.|| .+|++++++..+.++         ..|++|+...|+.|++|++.+|+||+||+|+|||.||+|++||+|+.|.+
T Consensus        48 ~~k~E~~~Ki~~~~~l~~~p~---------~~eVya~~~~Ik~S~kK~~~l~~lirgm~v~~AL~Ql~~s~kK~a~~i~~  118 (218)
T KOG1711|consen   48 SEKWEERNKIVYPPQLPFEPK---------RPEVYACSKSIKSSPKKVWLLARLIRGMSVEEALMQLEFSDKKAAKTIAE  118 (218)
T ss_pred             hHHHHHhccccCcccCCCCCc---------chhHHHHHHHHHhCHHHHHHHHHHHcCCCHHHHHHHhhcchHHHHHHHHH
Confidence            44677 458888777777633         25799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhcCCCCCCCeEE-EEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecCCCCcc
Q 028931          132 LIYSAAANGVHNMGFNEASLVI-AKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY  198 (201)
Q Consensus       132 lL~sA~aNA~~~~gld~d~L~I-~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~~~~~~  198 (201)
                      +|.+|.+||.+|+|+|+++|+| .++|+++|.++||+.++||||.++|++++|||+|+|.|+.++.-+
T Consensus       119 ~l~~A~~nA~~~~gl~~~~l~v~~~~t~~~g~~~Krl~~hargr~~ii~~~yvhi~v~L~e~s~~~~~  186 (218)
T KOG1711|consen  119 VLLSARANAVHNHGLDPDSLLVVAEATVGQGNELKRLKVHARGRFGIIRRPYVHIFVKLEEGSPPQQR  186 (218)
T ss_pred             HHHHHHhhhHHhcCCCccceEEEEeeecccchhhhheeeeccCcccceecceeeEEEEEeecCCCchh
Confidence            9999999999999999999887 999999999999999999999999999999999999999876544

>KOG3353 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=7.1e-16  Score=128.85  Aligned_cols=110  Identities=22%  Similarity=0.351  Sum_probs=103.5

Q ss_pred             cEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhh--------------------------------CCCcchhHHH
Q 028931           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYPIF  130 (201)
Q Consensus        83 ~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~f--------------------------------spKKaA~~V~  130 (201)
                      ..+++.+.++++|.+..++.+..|+++++..|+..|.-                                +|+|+|++++
T Consensus         7 k~~karg~~lrv~fKn~r~~~~~i~~~~~~~a~~~l~~v~~~~~c~p~~~~~~g~g~~~q~k~~~~~~~rwpkksaefll   86 (175)
T KOG3353|consen    7 KSCKARGSNLRVHFKNTRETAQTIKCMELLKATVYLKDVILQKICVPFRRYNGGVGRTAQAKQWGWTQGRWPKKSAEFLL   86 (175)
T ss_pred             hhhhcccccEEEEeccCcccchhhcCcccccceeeeccchhhcccccceecCCCcCccchhhhhccccCcccchHHHHHH
Confidence            45778889999999999999999999999999988882                                7999999999


Q ss_pred             HHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          131 KLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       131 KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      .+|++|.+||+. +|+|.|.|+|.++.||+.|.+.|.++||+||.+++.+..|||++||.|.+
T Consensus        87 ~~LkN~esnaEl-kgldVDsLvIehiqvnkApKm~~rtyraHg~in~y~ssP~hie~il~~ke  148 (175)
T KOG3353|consen   87 HMLKNAESNAEL-KGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKE  148 (175)
T ss_pred             HHHHhhhhcccc-cCcCcceeEeeehhhcccchhhhHHHHhhcccccccCChHHHHHHHHhhc
Confidence            999999999998 58999999999999999999999999999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	201
3bbo_U	199	Homology Model For The Spinach Chloroplast 50s Subu		2e-40
1giy_S	113	Crystal Structure Of The Ribosome At 5.5 A Resoluti		3e-17
3mrz_S	112	Recognition Of The Amber Stop Codon By Release Fact		4e-17
1bxe_A	113	Ribosomal Protein L22 From Thermus Thermophilus Len		5e-17
1pnu_Q	130	Crystal Structure Of A Streptomycin Dependent Ribos		3e-16
1jzx_L	134	Structural Basis For The Interaction Of Antibiotics		3e-16
1i4j_A	110	Crystal Structure Of L22 Ribosomal Protein Mutant L		1e-14
3sgf_W	116	Crystal Structure Of Release Factor Rf3 Trapped In		4e-13
1p85_Q	110	Real Space Refined Coordinates Of The 50s Subunit F		4e-13
2gya_Q	106	Structure Of The 50s Subunit Of A Pre-Translocation		7e-13

>pdb|3BBO|U Chain U, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 199

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/119 (63%), Positives = 93/119 (78%)
Query: 80  NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAAN 139
            K  E++     + MS  K RRVIDQIRGRSY ETLMILELMPYRACYPIFKLIYSAAAN
Sbjct: 27  GKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAAN 86
Query: 140 GVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 198
             HN  FN+A+L+I+KAEVN+  + K+ +P+A+GR +MI RPTCHIT+VLRD++  D Y
Sbjct: 87  ASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHFDSY 145

>pdb|1GIY|S Chain S, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix Length = 113

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 64/106 (60%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
               E  L +  A V+E  + KR  P+A+GR  +IK+ T HITV+L
Sbjct: 62  HDMLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVIL 107

>pdb|3MRZ|S Chain S, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 112

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 64/106 (60%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
               E  L +  A V+E  + KR  P+A+GR  +IK+ T HITV+L
Sbjct: 62  HDMLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVIL 107

>pdb|1BXE|A Chain A, Ribosomal Protein L22 From Thermus Thermophilus Length = 113

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 64/106 (60%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
               E  L +  A V+E  + KR  P+A+GR  +IK+ T HITV+L
Sbjct: 62  HDXLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVIL 107

>pdb|1PNU|Q Chain Q, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 130

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 76  RNKTNKKAEVS------ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPI 129
           RNK  +K +V       A A+Y+ MS  KVR V+D IRG+S ++   +L  +P  A  P+
Sbjct: 5   RNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPV 64
Query: 130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
            K++ SA AN +HN    E  L + +A V+   + KR  P+A+G  ++IK+ T HIT+++
Sbjct: 65  AKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIV 124

>pdb|1JZX|L Chain L, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria Length = 134

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 76  RNKTNKKAEVS------ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPI 129
           RNK  +K +V       A A+Y+ MS  KVR V+D IRG+S ++   +L  +P  A  P+
Sbjct: 9   RNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPV 68
Query: 130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
            K++ SA AN +HN    E  L + +A V+   + KR  P+A+G  ++IK+ T HIT+++
Sbjct: 69  AKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIV 128

>pdb|1I4J|A Chain A, Crystal Structure Of L22 Ribosomal Protein Mutant Length = 110

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
               E  L +  A V+E  +     P+A+GR  +IK+ T HITV+L
Sbjct: 62  HDALEDRLYVKAAYVDEGPAVL---PRARGRADIIKKRTSHITVIL 104

>pdb|3SGF|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 116

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 58/108 (53%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN
Sbjct: 2   ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct: 62  DGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109

>pdb|1P85|Q Chain Q, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 110

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 58/108 (53%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN
Sbjct: 2   ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct: 62  DGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109

>pdb|2GYA|Q Chain Q, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 106

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 57/105 (54%)
Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G 
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60
Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
           +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct: 61  DIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	4e-56
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	8e-54
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	1e-46
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	4e-44
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	7e-37
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	4e-24
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	9e-21
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	2e-20
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	3e-18
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	5e-18

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199

 Score =  175 bits (445), Expect = 4e-56
 Identities = 76/124 (61%), Positives = 95/124 (76%)

Query: 75  NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
           +  +  K  E++     + MS  K RRVIDQIRGRSY ETLMILELMPYRACYPIFKLIY
Sbjct: 22  HHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIY 81

Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL 194
           SAAAN  HN  FN+A+L+I+KAEVN+  + K+ +P+A+GR +MI RPTCHIT+VLRD++ 
Sbjct: 82  SAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITH 141

Query: 195 DDEY 198
            D Y
Sbjct: 142 FDSY 145

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134

 Score =  167 bits (425), Expect = 8e-54
 Identities = 40/130 (30%), Positives = 74/130 (56%)

Query: 62  ISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM 121
           +++ ++   +    + +   +    A A+Y+ MS  KVR V+D IRG+S ++   +L  +
Sbjct: 1   MTAPEQTFRNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFI 60

Query: 122 PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRP 181
           P  A  P+ K++ SA AN +HN    E  L + +A V+   + KR  P+A+G  ++IK+ 
Sbjct: 61  PRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKR 120

Query: 182 TCHITVVLRD 191
           T HIT+++ +
Sbjct: 121 TSHITIIVAE 130

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110

 Score =  148 bits (376), Expect = 1e-46
 Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
               E  L +  A V+E        P+A+GR  +IK+ T HITV+L +
Sbjct: 62  HDALEDRLYVKAAYVDE---GPAVLPRARGRADIIKKRTSHITVILGE 106

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110

 Score =  141 bits (359), Expect = 4e-44
 Identities = 44/108 (40%), Positives = 58/108 (53%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN
Sbjct: 2   ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct: 62  DGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110

 Score =  123 bits (311), Expect = 7e-37
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 89  ARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNE 148
            R +  S  K+  +   IRG S ++ L  LE    +    I +++  A    V +     
Sbjct: 3   RRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEF 62

Query: 149 AS-LVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            S L IA++        KR R   +GR  ++++  CH  V L +
Sbjct: 63  RSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVE 106

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Length = 155

 Score = 92.2 bits (229), Expect = 4e-24
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 31/149 (20%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------ 119
           + +      A  R   MS    + +  +I+G++  E +  LE                  
Sbjct: 8   EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 67

Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
                         P +A      L+ +A  N   + GF+  ++ I     ++    +  
Sbjct: 68  GHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGR 126

Query: 168 RPKAQGRVHMIKRPTCHITVVLRDMSLDD 196
           +P+A GR      P   + ++L +  ++D
Sbjct: 127 KPRAMGRASAWNSPQVDVELILEEPEVED 155

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Length = 183

 Score = 83.5 bits (206), Expect = 2e-20
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM-------------- 121
           R   N+   V  SA  L +       V+  I+G + E     L+ +              
Sbjct: 8   REPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTG 67

Query: 122 ------------------PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATS 163
                             P ++   I  L+ + +AN       N A+LVI   +VN A  
Sbjct: 68  CIGRTAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQA-KSLNTANLVIQHGQVNRAQK 126

Query: 164 AKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            +R   +A GR++      CH+ +  ++
Sbjct: 127 GRRRTYRAHGRINPYLNSGCHVEIFAQE 154

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V 3jyw_N Length = 184

 Score = 77.3 bits (190), Expect = 3e-18
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 33/148 (22%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM-------------- 121
              TN     SA   YL +S    R     I G    +    LE +              
Sbjct: 6   ATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNS 65

Query: 122 ------------------PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATS 163
                             P ++   +  L+ +AAAN     G +   L ++  +VN+A  
Sbjct: 66  SIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAE-AKGLDATKLYVSHIQVNQAPK 124

Query: 164 AKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            +R   +A GR++  +    HI +V+ +
Sbjct: 125 QRRRTYRAHGRINKYESSPSHIELVVTE 152

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 184

 Score = 76.9 bits (189), Expect = 5e-18
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 33/144 (22%)

Query: 80  NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE-------------------- 119
           N      +    L +     R     I+G    +    L+                    
Sbjct: 10  NPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGR 69

Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
                         P ++   +  ++ +A +N     G +  SLVI   +VN+A   +R 
Sbjct: 70  CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAEL-KGLDVDSLVIEHIQVNKAPKMRRR 128

Query: 168 RPKAQGRVHMIKRPTCHITVVLRD 191
             +A GR++      CHI ++L +
Sbjct: 129 TYRAHGRINPYMSSPCHIEMILTE 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	100.0
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	100.0
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	100.0
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	100.0
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	100.0
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	100.0
3j21_S	155	50S ribosomal protein L22P; archaea, archaeal, KIN	100.0
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	100.0
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	100.0
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	100.0
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	100.0

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...

Probab=100.00  E-value=1.2e-43  Score=274.70  Aligned_cols=110  Identities=40%  Similarity=0.453  Sum_probs=108.1

Q ss_pred             cEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCc
Q 028931           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (201)
Q Consensus        83 ~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~  162 (201)
                      ||++|..+++++||+|+++||++||||+++||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||+++|||+||
T Consensus         1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f~pkkaa~~v~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~   80 (110)
T 3r8s_S            1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGP   80 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEE
T ss_pred             CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhhCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEeCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcCCCCcccccccCceeEEEEEEec
Q 028931          163 SAKRPRPKAQGRVHMIKRPTCHITVVLRDM  192 (201)
Q Consensus       163 ~lKRi~pRArGRa~~i~kr~sHItVvL~E~  192 (201)
                      ++||++||||||+++|++++|||+|+|+|+
T Consensus        81 ~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek  110 (110)
T 3r8s_S           81 SMKRIMPRAKGRADRILKRTSHITVVVSDR  110 (110)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred             ccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence            999999999999999999999999999984

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M

Probab=100.00  E-value=1e-42  Score=269.55  Aligned_cols=108  Identities=23%  Similarity=0.311  Sum_probs=105.2

Q ss_pred             EeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCC-CCCeEEEEEEecCCcccCC
Q 028931           88 SARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFN-EASLVIAKAEVNEATSAKR  166 (201)
Q Consensus        88 ~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld-~d~L~I~ea~V~kG~~lKR  166 (201)
                      +.+++++||+|+++||++||||+++||+.||+|+|+|+|+.|+++|+||.+||++|+|+| .|+|||++||||+||++||
T Consensus         2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~f~pkkaa~~v~klL~sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR   81 (110)
T 2ftc_M            2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKR   81 (110)
T ss_pred             CcccceeCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCCCccCeEEEEEEECCCCcccC
Confidence            578999999999999999999999999999999999999999999999999999989999 8999999999999999999


Q ss_pred             CCcCCCCcccccccCceeEEEEEEecCCC
Q 028931          167 PRPKAQGRVHMIKRPTCHITVVLRDMSLD  195 (201)
Q Consensus       167 i~pRArGRa~~i~kr~sHItVvL~E~~~~  195 (201)
                      ++||||||+++|++++|||+|+|+|++++
T Consensus        82 ~~prA~GRa~~i~k~~~HI~vvl~e~~~p  110 (110)
T 2ftc_M           82 IRYHGRGRFGIMEKVYCHYFVKLVEGPPP  110 (110)
T ss_pred             CCCCCCCCCCccccCCccEEEEEEeCCCC
Confidence            99999999999999999999999998865

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...

Probab=100.00  E-value=1.7e-42  Score=277.01  Aligned_cols=112  Identities=36%  Similarity=0.549  Sum_probs=109.3

Q ss_pred             CcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCC
Q 028931           82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEA  161 (201)
Q Consensus        82 ~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG  161 (201)
                      .++++|..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||.+||++|+|||+|+|||++||||+|
T Consensus        21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~f~pkKaA~~v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~G  100 (134)
T 2zjr_P           21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAG  100 (134)
T ss_dssp             CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEEC
T ss_pred             ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCC
Confidence            46799999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             cccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          162 TSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       162 ~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      |++||++||||||+++|++++|||+|+|+|.+
T Consensus       101 p~lKR~~pRA~GRa~~i~k~tsHItvvl~E~~  132 (134)
T 2zjr_P          101 PTLKRLIPRARGSANIIKKRTSHITIIVAEKG  132 (134)
T ss_dssp             CCEEEEEECSTTCEEEEEECCEEEEEEEEECC
T ss_pred             ccccCCCCCCCCCCcccccCCceEEEEEEecC
Confidence            99999999999999999999999999999975

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...

Probab=100.00  E-value=1.1e-41  Score=263.68  Aligned_cols=108  Identities=43%  Similarity=0.565  Sum_probs=105.6

Q ss_pred             cEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCc
Q 028931           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (201)
Q Consensus        83 ~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~  162 (201)
                      ||++|..+++++||+|+|+||++||||+++||+.||+|+|+|+|+.|+++|+||.+||++|+|||+|+|||++||||+||
T Consensus         1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~~~pkkaa~~v~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~   80 (110)
T 1i4j_A            1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP   80 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred             CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          163 SAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       163 ~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      +   ++||||||+++|++++|||+|+|+|++
T Consensus        81 ~---~~pRA~GRa~~i~k~~~HItvvl~e~~  108 (110)
T 1i4j_A           81 A---VLPRARGRADIIKKRTSHITVILGEKH  108 (110)
T ss_dssp             E---ECSCSSSCCCSCCEEEEEEEEEEEESS
T ss_pred             e---EeecCCCCCcccccCCeeEEEEEEecC
Confidence            9   999999999999999999999999974

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=3.4e-41  Score=284.15  Aligned_cols=118  Identities=64%  Similarity=1.005  Sum_probs=113.7

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecC
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNE  160 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~k  160 (201)
                      +.++++|..+++++||+|+++||++||||+|++|+.||+|+|+|+|..|+++|+||++||++|+|+|+|+|||++||||+
T Consensus        28 ~~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~f~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~Vnk  107 (199)
T 3bbo_U           28 KCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNK  107 (199)
T ss_dssp             --CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCB
T ss_pred             CCeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHHHCCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCcCCCCcccccccCceeEEEEEEecCCCCcc
Q 028931          161 ATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY  198 (201)
Q Consensus       161 G~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~~~~~~  198 (201)
                      ||++||++||||||+++|++++|||+|+|+|.+++++|
T Consensus       108 Gp~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~~~y  145 (199)
T 3bbo_U          108 GITLKKVKPRARGRSYMILRPTCHITIVLRDITHFDSY  145 (199)
T ss_dssp             CCCCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCCCC
T ss_pred             CCcccCCCCCCCCCCCcccCCCccEEEEEeeCCchHHH
Confidence            99999999999999999999999999999999988776

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...

Probab=100.00  E-value=2.6e-39  Score=264.10  Aligned_cols=116  Identities=22%  Similarity=0.411  Sum_probs=109.3

Q ss_pred             CCCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhh------------------------------CCCcchhHH
Q 028931           80 NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL------------------------------MPYRACYPI  129 (201)
Q Consensus        80 ~~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~f------------------------------spKKaA~~V  129 (201)
                      ++.++++|..+++++||+|+++||++||||++++|+.+|+|                              +|+|+|+.|
T Consensus        10 ~~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~i   89 (155)
T 1vq8_R           10 DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAF   89 (155)
T ss_dssp             CGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHH
T ss_pred             CCCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHH
Confidence            34678999999999999999999999999999999999999                              999999999


Q ss_pred             HHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecCCCC
Q 028931          130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD  196 (201)
Q Consensus       130 ~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~~~~  196 (201)
                      +++|+||.+||+++ |||+|+|||+||+||+||++||++|||+||+++|++++|||+|+|+|.+.||
T Consensus        90 lklL~sA~aNAe~k-gld~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~~~  155 (155)
T 1vq8_R           90 LDLLENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVED  155 (155)
T ss_dssp             HHHHHHHHHHHHHT-TSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC----
T ss_pred             HHHHHHHHHHHHHc-CCChhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCCCC
Confidence            99999999999997 9999999999999999999999999999999999999999999999987665

>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.5e-37  Score=253.74  Aligned_cols=112  Identities=26%  Similarity=0.360  Sum_probs=108.7

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhh-----------------------------CCCcchhHHHH
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL-----------------------------MPYRACYPIFK  131 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~f-----------------------------spKKaA~~V~K  131 (201)
                      +.++++|..+++++||+|+++||++||||++++|+.+|+|                             +|+|+|+.|++
T Consensus        14 ~~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilk   93 (155)
T 3j21_S           14 PKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKK   93 (155)
T ss_dssp             HHHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHH
T ss_pred             CCeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHH
Confidence            3578999999999999999999999999999999999999                             99999999999


Q ss_pred             HHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          132 LIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       132 lL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      +|+||.+||++ +|||.|+|||+||+||+||++||++|||+||+++|++++|||+|+|+|.+
T Consensus        94 lL~sA~aNAe~-kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~  154 (155)
T 3j21_S           94 VLLNVKNNAVQ-KGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR  154 (155)
T ss_dssp             HHHHHHHHHHH-HTCCGGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHH-cCCChhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence            99999999997 69999999999999999999999999999999999999999999999875

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=6.6e-37  Score=255.88  Aligned_cols=112  Identities=21%  Similarity=0.386  Sum_probs=106.4

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHh----------h----------------------CCCcchhH
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE----------L----------------------MPYRACYP  128 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~----------f----------------------spKKaA~~  128 (201)
                      +.++++|..+++++||+|+++||++||||++++|+.+|+          |                      +|+|+|+.
T Consensus        11 ~~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~   90 (184)
T 2zkr_r           11 PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEF   90 (184)
T ss_dssp             TTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHH
T ss_pred             CCeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHH
Confidence            457899999999999999999999999999999999999          9                      99999999


Q ss_pred             HHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          129 IFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       129 V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      |+++|+||.+||+++ |||.|+|||+||+||+||++||++|||+||+++|++++|||+|+|+|.+
T Consensus        91 ilklLksA~aNAe~k-glD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~  154 (184)
T 2zkr_r           91 LLHMLKNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKE  154 (184)
T ss_dssp             HHHHHHHHHHHHHHH-TSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC-
T ss_pred             HHHHHHHHHHHHHHc-CCChhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcC
Confidence            999999999999986 9999999999999999999999999999999999999999999999874

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q

Probab=100.00  E-value=2.9e-36  Score=251.59  Aligned_cols=112  Identities=25%  Similarity=0.406  Sum_probs=108.1

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhh--------------------------------CCCcchhH
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYP  128 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~f--------------------------------spKKaA~~  128 (201)
                      +.++++|..+++++||+|+++||++||||++++|+.+|+|                                +|+|+|++
T Consensus        13 p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~   92 (183)
T 4a17_Q           13 QAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKV   92 (183)
T ss_dssp             TTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHH
T ss_pred             CCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHH
Confidence            4579999999999999999999999999999999999995                                89999999


Q ss_pred             HHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          129 IFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       129 V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      |+++|+||.+||+++ |||.|+|||+||+||+||++||++|||+||+++|++++|||+|+|+|.+
T Consensus        93 ilklLksA~aNAe~k-gLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke  156 (183)
T 4a17_Q           93 ILGLLDNLSANAQAK-SLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVA  156 (183)
T ss_dssp             HHHHHHHHHHHTTTT-TCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhc-CCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeecc
Confidence            999999999999975 9999999999999999999999999999999999999999999999875

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N

Probab=100.00  E-value=2.3e-36  Score=252.54  Aligned_cols=112  Identities=25%  Similarity=0.378  Sum_probs=108.3

Q ss_pred             CCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhh--------------------------------CCCcchhH
Q 028931           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYP  128 (201)
Q Consensus        81 ~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~f--------------------------------spKKaA~~  128 (201)
                      +.++++|..+++++||+|+++||++||||++++|+.+|+|                                +|+|+|+.
T Consensus        11 ~~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~   90 (184)
T 3u5e_P           11 PAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKF   90 (184)
T ss_dssp             GGGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHH
T ss_pred             CCceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHH
Confidence            3578999999999999999999999999999999999995                                89999999


Q ss_pred             HHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEecC
Q 028931          129 IFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS  193 (201)
Q Consensus       129 V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~  193 (201)
                      |+++|+||.+||++ +|||.|+|||+||+||+||++||++|||+||+++|++++|||+|+|+|.+
T Consensus        91 ilklLksA~aNAe~-kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e  154 (184)
T 3u5e_P           91 VQGLLQNAAANAEA-KGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKE  154 (184)
T ss_dssp             HHHHHHHHHHHHHH-TTCCTTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHH-cCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeecc
Confidence            99999999999997 69999999999999999999999999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d2zjrp1	127	d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ	2e-39
d2gycq1	106	d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric	5e-39
d1i4ja_	110	d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat	7e-35
d1vqor1	150	d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon	1e-27

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  129 bits (326), Expect = 2e-39
 Identities = 40/118 (33%), Positives = 68/118 (57%)

Query: 74  NNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLI 133
             + +   +    A A+Y+ MS  KVR V+D IRG+S ++   +L  +P  A  P+ K++
Sbjct: 6   QRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVL 65

Query: 134 YSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            SA AN +HN    E  L + +A V+   + KR  P+A+G  ++IK+ T HIT+++ +
Sbjct: 66  NSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAE 123

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

 Score =  127 bits (321), Expect = 5e-39
 Identities = 43/105 (40%), Positives = 57/105 (54%)

Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G 
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60

Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
           +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct: 61  DIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

 Score =  117 bits (294), Expect = 7e-35
 Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
               E  L +  A V+E  +     P+A+GR  +IK+ T HITV+L +
Sbjct: 62  HDALEDRLYVKAAYVDEGPAVL---PRARGRADIIKKRTSHITVILGE 106

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 99.6 bits (248), Expect = 1e-27
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 31/144 (21%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------ 119
           + +      A  R   MS    + +  +I+G++  E +  LE                  
Sbjct: 7   EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 66

Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
                         P +A      L+ +A  N   + GF+  ++ I     ++    +  
Sbjct: 67  GHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGR 125

Query: 168 RPKAQGRVHMIKRPTCHITVVLRD 191
           +P+A GR      P   + ++L +
Sbjct: 126 KPRAMGRASAWNSPQVDVELILEE 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d2zjrp1	127	Ribosomal protein L22 {Deinococcus radiodurans [Ta	100.0
d1i4ja_	110	Ribosomal protein L22 {Thermus aquaticus, subsp. T	100.0
d2gycq1	106	Ribosomal protein L22 {Escherichia coli [TaxId: 56	100.0
d1vqor1	150	Ribosomal protein L22 {Archaeon Haloarcula marismo	100.0
d1r9pa_	134	NifU-like protein HI0377 {Haemophilus influenzae [	84.25

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.2e-41  Score=266.48  Aligned_cols=113  Identities=35%  Similarity=0.535  Sum_probs=109.1

Q ss_pred             CcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCC
Q 028931           82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEA  161 (201)
Q Consensus        82 ~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG  161 (201)
                      .++++|..+++++||+|+++|+++||||+|+||+.||+|+|+|+|..|.++|+||++||++++|+|+|+|||++||||+|
T Consensus        14 ~~~~~A~~k~ir~Sp~K~r~v~~~IrG~~v~eAl~~L~f~~kkaa~~v~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G   93 (127)
T d2zjrp1          14 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAG   93 (127)
T ss_dssp             CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEEC
T ss_pred             cchhhhhhcccccCHHHHHHHHHHHcCCcHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHhcccCcccceEEEEEEECCC
Confidence            35577999999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             cccCCCCcCCCCcccccccCceeEEEEEEecCC
Q 028931          162 TSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL  194 (201)
Q Consensus       162 ~~lKRi~pRArGRa~~i~kr~sHItVvL~E~~~  194 (201)
                      |++||++||||||+++|++++|||+|+|+|++.
T Consensus        94 ~~~KR~~prArGRa~~i~k~~sHi~VvL~e~~~  126 (127)
T d2zjrp1          94 PTLKRLIPRARGSANIIKKRTSHITIIVAEKGN  126 (127)
T ss_dssp             CCEEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred             CcccCCCCCcCCCCCcccCCcccEEEEEEecCC
Confidence            999999999999999999999999999999764

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

Probab=100.00  E-value=1.3e-40  Score=256.15  Aligned_cols=109  Identities=42%  Similarity=0.553  Sum_probs=105.8

Q ss_pred             cEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCc
Q 028931           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (201)
Q Consensus        83 ~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~  162 (201)
                      ||++|..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|.|+|+||.+||++++|+|+|+|||++||||+||
T Consensus         1 Me~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al~~L~f~~~kaa~~i~k~l~SA~aNA~~~~~~d~~~L~I~~~~v~~G~   80 (110)
T d1i4ja_           1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP   80 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred             CcEEEEcCccccCHHHHHHHHHHHcCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhccCCCccceEEEEEEECCCc
Confidence            68999999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             ccCCCCcCCCCcccccccCceeEEEEEEecCC
Q 028931          163 SAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL  194 (201)
Q Consensus       163 ~lKRi~pRArGRa~~i~kr~sHItVvL~E~~~  194 (201)
                      ++|   ||||||+++|++|+|||+|+|+|++.
T Consensus        81 ~~k---~rarGRa~~i~k~~sHi~vvL~e~~~  109 (110)
T d1i4ja_          81 AVL---PRARGRADIIKKRTSHITVILGEKHG  109 (110)
T ss_dssp             EEC---SCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred             eEC---hhhccCCCcccCCcccEEEEEeecCC
Confidence            876   79999999999999999999999864

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-41  Score=260.70  Aligned_cols=106  Identities=41%  Similarity=0.466  Sum_probs=103.5

Q ss_pred             EEeCccccCHHHHHHHHHHHhCCCHHHHHHHHhhCCCcchhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCC
Q 028931           87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKR  166 (201)
Q Consensus        87 A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~fspKKaA~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKR  166 (201)
                      |..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|.|+|+||.+||++++|+|+++|||+++|||+||++||
T Consensus         1 A~~k~ir~Sp~K~r~va~~IrG~~v~~A~~~L~f~~kkaa~~i~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G~~~KR   80 (106)
T d2gycq1           1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKR   80 (106)
T ss_dssp             CCCCCCCCCSSSSCSSSSSSSSSCSHHHHSSSSSCCSSTTSSTTTSSSSSSTTTSTTTTCCTTTEEECCCCCCCCCBCCC
T ss_pred             CCcCccccCHHHHHHHHHHHcCCcHHHHHHHHccCCcccchHHHHHHHHHHHHHHHhcCCCHHHhEEEEEEECCCCcccC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCcccccccCceeEEEEEEec
Q 028931          167 PRPKAQGRVHMIKRPTCHITVVLRDM  192 (201)
Q Consensus       167 i~pRArGRa~~i~kr~sHItVvL~E~  192 (201)
                      ++||||||+++|++|+|||+|+|+|+
T Consensus        81 ~~~rarGRa~~i~k~~sHi~vvL~Ek  106 (106)
T d2gycq1          81 IMPRAKGRADRILKRTSHITVVVSDR  106 (106)
T ss_dssp             BCCCTTTCCCBCCCBCCCCCCCEEEC
T ss_pred             cCCcccCCCCcccCCCccEEEEEecC
Confidence            99999999999999999999999984

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1e-36  Score=245.27  Aligned_cols=115  Identities=21%  Similarity=0.385  Sum_probs=108.5

Q ss_pred             cccCCCCcEEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHh------------------------------hCCCcc
Q 028931           76 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------------------LMPYRA  125 (201)
Q Consensus        76 ~~~~~~~~e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~------------------------------fspKKa  125 (201)
                      .....++..++|..+++++||+|+++||++||||++++|+.||+                              |+|+|+
T Consensus         5 ~~~~~~~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~~~~~~g~~p~ka   84 (150)
T d1vqor1           5 SVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKA   84 (150)
T ss_dssp             SSCCCTTTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSCSBEECCHHH
T ss_pred             cccCCCCceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhcCCCcccChHHH
Confidence            33444567899999999999999999999999999999999998                              689999


Q ss_pred             hhHHHHHHHHHHhhchhcCCCCCCCeEEEEEEecCCcccCCCCcCCCCcccccccCceeEEEEEEe
Q 028931          126 CYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD  191 (201)
Q Consensus       126 A~~V~KlL~sA~aNA~~~~gld~d~L~I~ea~V~kG~~lKRi~pRArGRa~~i~kr~sHItVvL~E  191 (201)
                      |+.|+++|+||.+||++ .|+|+|+|||.+||||+||++||++||||||++++++++|||+|+|+|
T Consensus        85 a~~i~kll~sa~aNA~~-~~~d~~~L~I~~~~v~kG~~~KR~~prArGRa~~i~k~~~hi~vvL~E  149 (150)
T d1vqor1          85 SKAFLDLLENAVGNADH-QGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHh-cCCChhHeEEEEEEECCCccccCcCcccCCCCCCccCCCceEEEEEeC
Confidence            99999999999999987 589999999999999999999999999999999999999999999988

>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU-like protein HI0377
species: Haemophilus influenzae [TaxId: 727]

Probab=84.25  E-value=0.57  Score=34.34  Aligned_cols=67  Identities=16%  Similarity=0.126  Sum_probs=54.0

Q ss_pred             EEEEEeCccccCHHHHHHHHHHHhCCCHHHHHHHHh--------hCC--CcchhHHHHHHHHHHhhchhcCCCCCCC
Q 028931           84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE--------LMP--YRACYPIFKLIYSAAANGVHNMGFNEAS  150 (201)
Q Consensus        84 e~~A~~r~iriSpkKlr~Var~IRGk~v~eAi~qL~--------fsp--KKaA~~V~KlL~sA~aNA~~~~gld~d~  150 (201)
                      +++..+...-+|--=+-.++.+|+|++++||..+-.        ..|  .+.|....+.|+.|+++.+.+.|.+..+
T Consensus        55 di~f~~~GCais~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l~~~p~r~~Ca~L~~~al~~al~~y~~k~g~~~~~  131 (134)
T d1r9pa_          55 DAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQGLEHHH  131 (134)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSC
T ss_pred             EEEEEeccCcccHhHHHHHHHHHHhCCHHHHHHhcchHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence            577888888999999999999999999999975532        233  4567777899999999998877887653