Citrus Sinensis ID: 029006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MFRQASRLLARASAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccEEEccccccEEEEEccccccccccccccHHcccccEEEEEEEccEEEEEEEEccEEEEEcccEEEEEcccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccHHHccccccccHHccccEEEEEEccccEEEcccEEEEEEEccccccEEEccccccEHEEEcccEEEEEEccccEEEEEccEEEEEccccEEEEEEccEEcHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MFRQASRLLARASAVTRsrafssqvpaapavdsTFVESWkkvnpnmeppktpsvymtprpqtptsipskltvNFVLpyaselsakevdmvivpastgqmgvlpghvptiaelkpgvlsvhdgndtkkyfvssgfafiHANSVADIIAveavpidqidpslVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG
Flexible Loop (DISEMBL)
mfrqasrllarasavtrsrafssqvpaapavdstFVESWKkvnpnmeppktpsvYMTPRPQTptsipskltVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG
Low Complexity Region (SEG)
MFrqasrllarasavtrsrafssQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG
Disordered region (IsUnstruct)
********************************************************************KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEF********************************
Disordered Region (DISOPRED)
********************************STFVESWKKVNPNMEP*****************IPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKG*******************AQIGVDVHSALNSAL**
Disordered Region (DISEMBL)
*****************************AVDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG
Disordered Region (DISPRO)
*****************S**************STFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRQASRLLARASAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGxxxxxxxxxxxxxxxxxxxxxIGVDVHSALNSALTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q40089	200	ATP synthase subunit delt	N/A	no	1.0	1.0	0.77	1e-88
Q96252	203	ATP synthase subunit delt	yes	no	0.99	0.975	0.756	2e-88
Q41000	197	ATP synthase subunit delt	N/A	no	0.98	0.994	0.711	2e-77
Q55F42	170	ATP synthase subunit delt	yes	no	0.625	0.735	0.388	2e-20
Q92196	162	ATP synthase subunit delt	N/A	no	0.665	0.820	0.375	5e-20
Q757N0	158	ATP synthase subunit delt	yes	no	0.64	0.810	0.410	2e-19
Q12165	160	ATP synthase subunit delt	yes	no	0.64	0.8	0.395	4e-19
P78700	159	ATP synthase subunit delt	yes	no	0.64	0.805	0.418	9e-18
P56525	165	ATP synthase subunit delt	N/A	no	0.7	0.848	0.319	4e-15
Q9D3D9	168	ATP synthase subunit delt	yes	no	0.645	0.767	0.371	4e-15

>sp|Q40089|ATP4_IPOBA ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1

 Score =  325 bits (833), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/200 (77%), Positives = 178/200 (89%)

Query: 1   MFRQASRLLARASAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRP 60
           MFR +SRLLARA+ +   R FS+ +PA  A DSTFVE+WKK+ PN++PPKTPS YM PRP
Sbjct: 1   MFRHSSRLLARATTMGWRRPFSTDLPAETAADSTFVEAWKKLIPNVDPPKTPSAYMAPRP 60

Query: 61  QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH 120
            TP+SIPSKLTVNFVLPY+SEL+ KEVDMVI+PA+TGQMGVLPGHV TIAELKPGV+SVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVH 120

Query: 121 DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLE 180
           +GND  KYFVS GFAFIHANS ADIIAVEAVP+D+ID +LVQKGLAEF QKL++A+TD+E
Sbjct: 121 EGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVE 180

Query: 181 KAEAQIGVDVHSALNSALTG 200
           KAEAQIGVDVHSALN+ALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Ipomoea batatas (taxid: 4120)

>sp|Q96252|ATP4_ARATH ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana GN=At5g47030 PE=1 SV=1

 Score =  324 bits (831), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 182/205 (88%), Gaps = 7/205 (3%)

Query: 1   MFRQASRLLARASAVTRS-----RAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVY 55
           MF+QASRLL+R+ A   S     RAFS+++P+   +DSTFVE+WKKV PNM+PP+TPS +
Sbjct: 1   MFKQASRLLSRSVAAASSKSVTTRAFSTELPST--LDSTFVEAWKKVAPNMDPPQTPSAF 58

Query: 56  MTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPG 115
           M PRP TP+SIP+KLTVNFVLPY SEL+ KEVDMVI+PASTGQMGVLPGHVPTIAELKPG
Sbjct: 59  MKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPG 118

Query: 116 VLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSA 175
           ++SVH+G D KKYF+SSGFAF+HANSVADIIAVEAVP+D IDPS VQKGLAEF QKL+SA
Sbjct: 119 IMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASA 178

Query: 176 TTDLEKAEAQIGVDVHSALNSALTG 200
           TTDLEKAEAQIGV+VHSA+N+AL+G
Sbjct: 179 TTDLEKAEAQIGVEVHSAINAALSG 203

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41000|ATP4_PEA ATP synthase subunit delta', mitochondrial OS=Pisum sativum PE=3 SV=1

 Score =  288 bits (737), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/201 (71%), Positives = 172/201 (85%), Gaps = 5/201 (2%)

Query: 1   MFRQA-SRLLARASAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPR 59
           MFR+A S  L+RASA   +R FS+ V A PA +S+FVE+W+KV+PN++PPKTP  ++  R
Sbjct: 1   MFRRATSTFLSRASA---TRRFSTDV-ATPATNSSFVEAWRKVSPNIDPPKTPLEFLKTR 56

Query: 60  PQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV 119
           P  P++IP+KLTVNFVLPY+S+L+AKEVD VI+PA+TG+MGVLPGHV TIAELKPGVL+V
Sbjct: 57  PPVPSTIPTKLTVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTV 116

Query: 120 HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDL 179
            +G DT KYFVSSGF FIHANSVADIIAVEAVP++Q+D  LVQKGL EF QKL+SATTDL
Sbjct: 117 QEGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDL 176

Query: 180 EKAEAQIGVDVHSALNSALTG 200
           EK EAQIG+DV SALNSALTG
Sbjct: 177 EKREAQIGIDVDSALNSALTG 197

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Pisum sativum (taxid: 3888)

>sp|Q55F42|ATPD_DICDI ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum GN=atp5D PE=3 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 1/126 (0%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKY 128
           LT + + P+ +    K+  +V +P + G  GV   HVP IAELKPGV+ + H+  D +K+
Sbjct: 37  LTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKF 96

Query: 129 FVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGV 188
           F+S GFAF++ ++   I  +EAVPIDQ+D   V+ GLA + Q  + A  +  KA A IG+
Sbjct: 97  FISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVALIGL 156

Query: 189 DVHSAL 194
           + +  +
Sbjct: 157 ETYQQM 162

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Dictyostelium discoideum (taxid: 44689)

>sp|Q92196|ATPD_AGABI ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus GN=atpD PE=2 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 82/133 (61%)

Query: 66  IPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT 125
           I  KL ++  LP+ +  S+++V  V +PA +G MG+L  HVP+I  L+PGV+ V + + +
Sbjct: 28  ISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVPSIEPLRPGVVEVVEDSGS 87

Query: 126 KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQ 185
           +K+FVS GFA +H N+   I  VEA P++      ++  L E N+  + + ++ +K EAQ
Sbjct: 88  QKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQ 147

Query: 186 IGVDVHSALNSAL 198
           I  +V+ AL  AL
Sbjct: 148 IEAEVYEALQHAL 160

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Agaricus bisporus (taxid: 5341)

>sp|Q757N0|ATPD_ASHGO ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATP16 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
           L +NF LP+ +  +   V  V +P  TGQ+G+L  HVP + +L PGV+ V +G+++KK+F
Sbjct: 30  LKLNFALPHETLFAGTAVKQVNLPVKTGQIGILANHVPIVEQLVPGVVEVLEGSESKKFF 89

Query: 130 VSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVD 189
           VS GFA +  +S   I +VEA P+D      V+  LAE  QK + A      AEA I ++
Sbjct: 90  VSGGFATVQPDSTLSITSVEAFPLDSFSAENVRALLAE-AQKNAGAADSRVAAEASIQIE 148

Query: 190 VHSALNSAL 198
           V  AL +AL
Sbjct: 149 VLEALQAAL 157

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q12165|ATPD_YEAST ATP synthase subunit delta, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP16 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 1/129 (0%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
           L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK+F
Sbjct: 32  LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFF 91

Query: 130 VSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVD 189
           +S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I V+
Sbjct: 92  ISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQVE 150

Query: 190 VHSALNSAL 198
           V   L S L
Sbjct: 151 VLENLQSVL 159

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P78700|ATPD_KLULA ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ATP16 PE=3 SV=2

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 1/129 (0%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
           L + F LP+ +  S   V  V +PA +GQ+G+L  HVPT+ +L PGV+ V +G+ +KK+F
Sbjct: 31  LKLQFALPHQTLFSGTPVTQVNLPAKSGQIGILANHVPTVEQLVPGVVEVLEGSSSKKFF 90

Query: 130 VSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVD 189
           VS GFA +  +S   I +VEA P++   P  V+  LAE  + +SSA      AEA I ++
Sbjct: 91  VSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAEAQKNVSSADEV-AAAEAAIQLE 149

Query: 190 VHSALNSAL 198
           V  AL +AL
Sbjct: 150 VLEALQAAL 158

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P56525|ATPD_NEUCR ATP synthase subunit delta, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=atp-16 PE=3 SV=2

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 79/141 (56%), Gaps = 1/141 (0%)

Query: 59  RPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLS 118
           R     ++  K+ ++  LP+ +   +++V  V +PA +G+MGVL  HVP+I +LKPG++ 
Sbjct: 24  RRGYAEAVADKIKLSLSLPHQAIYKSQDVVQVNIPAVSGEMGVLANHVPSIEQLKPGLVE 83

Query: 119 V-HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATT 177
           V  +    K+YF+S GFA +   S   I AVE   ++      V+  +AE  + +S   +
Sbjct: 84  VIEESGSNKQYFLSGGFAVVQPGSKLSINAVEGYALEDFSAEAVRAQIAEAQKIVSGGGS 143

Query: 178 DLEKAEAQIGVDVHSALNSAL 198
             + AEAQ+ ++V  +L + L
Sbjct: 144 QQDIAEAQVELEVLESLQAVL 164

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9D3D9|ATPD_MOUSE ATP synthase subunit delta, mitochondrial OS=Mus musculus GN=Atp5d PE=1 SV=1

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 69  KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGNDTK 126
           +++  F  P      +  V  V VP  TG  G+L  HVPT+  L+PG++ VH  DG  T 
Sbjct: 37  QMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGT-TT 95

Query: 127 KYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQI 186
           KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +LS A  +  +AE QI
Sbjct: 96  KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQI 155

Query: 187 GVDVHSALNSAL 198
            ++ + AL  AL
Sbjct: 156 RIEANEALVKAL 167

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
242129048	201	ATP synthase delta subunit 2 [Gossypium	1.0	0.995	0.815	3e-91
255575798	204	ATP synthase delta chain, mitochondrial,	1.0	0.980	0.789	6e-89
2493046	200	RecName: Full=ATP synthase subunit delta	1.0	1.0	0.77	6e-87
15237998	203	ATP synthase subunit delta' [Arabidopsis	0.99	0.975	0.756	1e-86
147863390	206	hypothetical protein VITISV_044183 [Viti	1.0	0.970	0.771	1e-86
118484950	207	unknown [Populus trichocarpa]	1.0	0.966	0.739	4e-85
224136358	198	predicted protein [Populus trichocarpa]	0.985	0.994	0.771	6e-85
225453289	206	PREDICTED: ATP synthase subunit delta',	1.0	0.970	0.776	7e-85
449432356	200	PREDICTED: ATP synthase subunit delta',	1.0	1.0	0.775	2e-84
297794529	203	ATP synthase delta [Arabidopsis lyrata s	0.99	0.975	0.751	2e-84

>gi|242129048|gb|ACS83603.1| ATP synthase delta subunit 2 [Gossypium hirsutum]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 164/201 (81%), Positives = 184/201 (91%), Gaps = 1/201 (0%)

Query: 1   MFRQASRLLARASAVTR-SRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPR 59
           MFRQASRLLAR +   R SRAFSS VPA PA DS+F+ESW KV PN++PPKTPS +MTPR
Sbjct: 1   MFRQASRLLARTTTPWRGSRAFSSDVPATPAQDSSFIESWSKVIPNLDPPKTPSSFMTPR 60

Query: 60  PQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV 119
           P TP++IPSKLTVNFVLPYASELSAKEVDMVIVPA+TGQMG+LPGHVPTIAELKPG+LSV
Sbjct: 61  PATPSAIPSKLTVNFVLPYASELSAKEVDMVIVPATTGQMGILPGHVPTIAELKPGILSV 120

Query: 120 HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDL 179
           H+GND  KYF+SSGFA IHANSVADIIAVEAVP+D++DP+LVQKGLA+F QKL SATTDL
Sbjct: 121 HEGNDVTKYFLSSGFALIHANSVADIIAVEAVPVDRLDPALVQKGLADFTQKLVSATTDL 180

Query: 180 EKAEAQIGVDVHSALNSALTG 200
           EKAEAQIGVDVHSA+NSA+TG
Sbjct: 181 EKAEAQIGVDVHSAMNSAITG 201

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575798|ref|XP_002528798.1| ATP synthase delta chain, mitochondrial, putative [Ricinus communis] gi|223531801|gb|EEF33620.1| ATP synthase delta chain, mitochondrial, putative [Ricinus communis]

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 161/204 (78%), Positives = 178/204 (87%), Gaps = 4/204 (1%)

Query: 1   MFRQASRLLARA----SAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYM 56
           M RQ SRL  R+      +   RA S++VPA  +VDS FVESW+KV PNM+PPKTP+ +M
Sbjct: 1   MLRQTSRLFGRSLTQQPKMMMGRAMSTEVPATASVDSDFVESWRKVVPNMDPPKTPAAFM 60

Query: 57  TPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGV 116
            PRP TP++IPSKLTVNFVLPYASELS KEVDMVI+PA+TGQMGVLPGHVPTIAELKPG+
Sbjct: 61  QPRPSTPSTIPSKLTVNFVLPYASELSTKEVDMVIMPATTGQMGVLPGHVPTIAELKPGI 120

Query: 117 LSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSAT 176
           LSVH+GND  KYF+SSGFAFIHANSVADIIAVEAVP+D IDPSLVQKGLAEF QKLSSAT
Sbjct: 121 LSVHEGNDVTKYFLSSGFAFIHANSVADIIAVEAVPVDHIDPSLVQKGLAEFTQKLSSAT 180

Query: 177 TDLEKAEAQIGVDVHSALNSALTG 200
           TDLEKAEAQIGVDVHSALNSALTG
Sbjct: 181 TDLEKAEAQIGVDVHSALNSALTG 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2493046|sp|Q40089.1|ATP4_IPOBA RecName: Full=ATP synthase subunit delta', mitochondrial; AltName: Full=F-ATPase delta' subunit; Flags: Precursor gi|217938|dbj|BAA01511.1| mitochondrial F1-ATPase delta subunit [Ipomoea batatas]

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 154/200 (77%), Positives = 178/200 (89%)

Query: 1   MFRQASRLLARASAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRP 60
           MFR +SRLLARA+ +   R FS+ +PA  A DSTFVE+WKK+ PN++PPKTPS YM PRP
Sbjct: 1   MFRHSSRLLARATTMGWRRPFSTDLPAETAADSTFVEAWKKLIPNVDPPKTPSAYMAPRP 60

Query: 61  QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH 120
            TP+SIPSKLTVNFVLPY+SEL+ KEVDMVI+PA+TGQMGVLPGHV TIAELKPGV+SVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVH 120

Query: 121 DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLE 180
           +GND  KYFVS GFAFIHANS ADIIAVEAVP+D+ID +LVQKGLAEF QKL++A+TD+E
Sbjct: 121 EGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVE 180

Query: 181 KAEAQIGVDVHSALNSALTG 200
           KAEAQIGVDVHSALN+ALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237998|ref|NP_199514.1| ATP synthase subunit delta' [Arabidopsis thaliana] gi|2493045|sp|Q96252.1|ATP4_ARATH RecName: Full=ATP synthase subunit delta', mitochondrial; AltName: Full=F-ATPase delta' subunit; Flags: Precursor gi|13430526|gb|AAK25885.1|AF360175_1 putative ATP synthase delta chain, mitochondrial precursor [Arabidopsis thaliana] gi|1655484|dbj|BAA13601.1| delta-prime subunit of mitochondrial F1-ATPase [Arabidopsis thaliana] gi|9759445|dbj|BAB10242.1| ATP synthase delta' chain, mitochondrial precursor [Arabidopsis thaliana] gi|15810621|gb|AAL07198.1| putative ATP synthase delta chain, mitochondrial precursor [Arabidopsis thaliana] gi|332008076|gb|AED95459.1| ATP synthase subunit delta' [Arabidopsis thaliana]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 182/205 (88%), Gaps = 7/205 (3%)

Query: 1   MFRQASRLLARASAVTRS-----RAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVY 55
           MF+QASRLL+R+ A   S     RAFS+++P+   +DSTFVE+WKKV PNM+PP+TPS +
Sbjct: 1   MFKQASRLLSRSVAAASSKSVTTRAFSTELPST--LDSTFVEAWKKVAPNMDPPQTPSAF 58

Query: 56  MTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPG 115
           M PRP TP+SIP+KLTVNFVLPY SEL+ KEVDMVI+PASTGQMGVLPGHVPTIAELKPG
Sbjct: 59  MKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPG 118

Query: 116 VLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSA 175
           ++SVH+G D KKYF+SSGFAF+HANSVADIIAVEAVP+D IDPS VQKGLAEF QKL+SA
Sbjct: 119 IMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASA 178

Query: 176 TTDLEKAEAQIGVDVHSALNSALTG 200
           TTDLEKAEAQIGV+VHSA+N+AL+G
Sbjct: 179 TTDLEKAEAQIGVEVHSAINAALSG 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863390|emb|CAN84027.1| hypothetical protein VITISV_044183 [Vitis vinifera]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/206 (77%), Positives = 180/206 (87%), Gaps = 6/206 (2%)

Query: 1   MFRQASRLLARASAVTRSRA------FSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSV 54
           M RQA+RLLAR +  + S        FS+ +PAAPA DSTF+++WKK+ PN++PP TP  
Sbjct: 1   MLRQATRLLARPAIASSSSFAARARPFSTDLPAAPAEDSTFIDAWKKIIPNIDPPATPLT 60

Query: 55  YMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKP 114
           +M PRPQTP+SIPSKLTVNFVLPYASELSAKEVDMVI+PA+TGQMGVLPGHV TIAELKP
Sbjct: 61  FMQPRPQTPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKP 120

Query: 115 GVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSS 174
           GV+SVH+GND  KYF+SSGFA IHANS ADIIA+EAVPIDQIDPSLVQKGLA+F QKLSS
Sbjct: 121 GVMSVHEGNDVTKYFISSGFAVIHANSFADIIAIEAVPIDQIDPSLVQKGLADFTQKLSS 180

Query: 175 ATTDLEKAEAQIGVDVHSALNSALTG 200
           A+TDLEKAEAQIGVDVHSALNSALTG
Sbjct: 181 ASTDLEKAEAQIGVDVHSALNSALTG 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484950|gb|ABK94340.1| unknown [Populus trichocarpa]

 Score =  319 bits (817), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 177/207 (85%), Gaps = 7/207 (3%)

Query: 1   MFRQASRLLARASAVTR-------SRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPS 53
           M RQASRLL R+ A T+       +R  S+ +P  P  DS F+ESWKKV PN++PPKTPS
Sbjct: 1   MLRQASRLLTRSIATTQQPIRVMGARPMSTNLPDTPVQDSAFIESWKKVAPNIDPPKTPS 60

Query: 54  VYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELK 113
            +M PRP TP++IPSK+TVNFVLPYASEL++KEVDMVI+PA+TGQMGVLPGHVPTIAELK
Sbjct: 61  AFMKPRPPTPSTIPSKITVNFVLPYASELTSKEVDMVIIPATTGQMGVLPGHVPTIAELK 120

Query: 114 PGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLS 173
           PGVLSVH+GND KKYF+SSGF F+HANSVADI+ VEAVPID ID +LVQKGLA+F QKLS
Sbjct: 121 PGVLSVHEGNDVKKYFLSSGFVFVHANSVADIVVVEAVPIDHIDQNLVQKGLADFTQKLS 180

Query: 174 SATTDLEKAEAQIGVDVHSALNSALTG 200
           SATT+LEKAEAQIG+DVHSALNSAL G
Sbjct: 181 SATTELEKAEAQIGIDVHSALNSALVG 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136358|ref|XP_002326840.1| predicted protein [Populus trichocarpa] gi|222835155|gb|EEE73590.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 155/201 (77%), Positives = 177/201 (88%), Gaps = 4/201 (1%)

Query: 1   MFRQASR-LLARASAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPR 59
           MFR+A+  +LAR     R+R FS+ +PAA  +DSTF E+WKKV PN++PPKTP  +M PR
Sbjct: 1   MFRRATTGILAR---TIRARLFSTGLPAAQTIDSTFAEAWKKVAPNLDPPKTPLSFMQPR 57

Query: 60  PQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV 119
           P TP++IPSKLTVNFVLPYASE+S KEVDMVI+PASTGQMGVLPGHV TI ELKPGVLSV
Sbjct: 58  PPTPSAIPSKLTVNFVLPYASEISGKEVDMVIIPASTGQMGVLPGHVSTITELKPGVLSV 117

Query: 120 HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDL 179
           H+GN+ KKYFVSSGFAFIHANS+ADI+AVEA P+DQID SLVQKGLAEF QKLSSA+TDL
Sbjct: 118 HEGNEVKKYFVSSGFAFIHANSIADIVAVEAAPLDQIDSSLVQKGLAEFTQKLSSASTDL 177

Query: 180 EKAEAQIGVDVHSALNSALTG 200
           EKAEAQIGVDVHSALN+ALTG
Sbjct: 178 EKAEAQIGVDVHSALNAALTG 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453289|ref|XP_002267995.1| PREDICTED: ATP synthase subunit delta', mitochondrial [Vitis vinifera] gi|297734660|emb|CBI16711.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 160/206 (77%), Positives = 182/206 (88%), Gaps = 6/206 (2%)

Query: 1   MFRQASRLLAR------ASAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSV 54
           M RQA+RLLAR      +S   R+R+FS+ +P APA DSTF+++WKK+ PN++PP TP  
Sbjct: 1   MLRQATRLLARPAIASSSSFAARARSFSTDLPTAPAEDSTFIDAWKKIIPNIDPPATPLT 60

Query: 55  YMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKP 114
           +M PRPQTP+SIPSKLTVNFVLPYASELSAKEVDMVI+PA+TGQMGVLPGHV TIAELKP
Sbjct: 61  FMQPRPQTPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKP 120

Query: 115 GVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSS 174
           GV+SVH+GND  KYF+SSGFA IHANS ADIIA+EAVPIDQIDPSLVQKGLA+F QKLSS
Sbjct: 121 GVMSVHEGNDVTKYFISSGFAVIHANSFADIIAIEAVPIDQIDPSLVQKGLADFTQKLSS 180

Query: 175 ATTDLEKAEAQIGVDVHSALNSALTG 200
           A+TDLEKAEAQIGVDVHSALNSALTG
Sbjct: 181 ASTDLEKAEAQIGVDVHSALNSALTG 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432356|ref|XP_004133965.1| PREDICTED: ATP synthase subunit delta', mitochondrial-like [Cucumis sativus] gi|449519178|ref|XP_004166612.1| PREDICTED: ATP synthase subunit delta', mitochondrial-like [Cucumis sativus]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/200 (77%), Positives = 175/200 (87%)

Query: 1   MFRQASRLLARASAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRP 60
           MFR+AS LLAR     R+R+FS+ +PAA +    FV +WKKV PN++PPKTP  +M PRP
Sbjct: 1   MFRRASTLLARPFLSARTRSFSTDLPAAGSNQDAFVSAWKKVIPNIDPPKTPLSFMAPRP 60

Query: 61  QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH 120
            TP+SIPSKLTVN VLPYASELSAKEVDMVI+PA+TGQMGVLPGHVPTIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNLVLPYASELSAKEVDMVIIPATTGQMGVLPGHVPTIAELKPGVLSVH 120

Query: 121 DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLE 180
           +G++ KKYFVSSGFAFIH NS ADIIAVEAVPI+QID + VQKGLAEF QKL+SA+TDLE
Sbjct: 121 EGSEIKKYFVSSGFAFIHGNSYADIIAVEAVPIEQIDAAQVQKGLAEFTQKLNSASTDLE 180

Query: 181 KAEAQIGVDVHSALNSALTG 200
           KAEAQIGVDVHSALNSALTG
Sbjct: 181 KAEAQIGVDVHSALNSALTG 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794529|ref|XP_002865149.1| ATP synthase delta [Arabidopsis lyrata subsp. lyrata] gi|297310984|gb|EFH41408.1| ATP synthase delta [Arabidopsis lyrata subsp. lyrata]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/205 (75%), Positives = 181/205 (88%), Gaps = 7/205 (3%)

Query: 1   MFRQASRLLARASAVTR-----SRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVY 55
           M +QASRLL+R+ A        +RAFS+++P+   +DSTFVE+WKKV PNMEPP+TPS +
Sbjct: 1   MLKQASRLLSRSVAAASAKSATTRAFSTELPST--LDSTFVEAWKKVAPNMEPPQTPSAF 58

Query: 56  MTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPG 115
           M PRP TP+SIP+KLTVNFVLPY SEL+ KEVDMVI+PASTGQMGVLPGHVPTIAELKPG
Sbjct: 59  MKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPG 118

Query: 116 VLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSA 175
           ++SVH+G D KKYF+SSGFAF+HANSVADIIAVEAVP+D IDPS VQKGLAEF QKL+SA
Sbjct: 119 IMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASA 178

Query: 176 TTDLEKAEAQIGVDVHSALNSALTG 200
           TTDLEKAEAQIGV+VHSA+N+AL+G
Sbjct: 179 TTDLEKAEAQIGVEVHSAINAALSG 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2171022	203	AT5G47030 [Arabidopsis thalian	0.85	0.837	0.817	8.4e-74
DICTYBASE|DDB_G0269038	170	atp5D "ATP synthase F1 delta"	0.625	0.735	0.388	6.3e-21
SGD|S000002162	160	ATP16 "Delta subunit of the ce	0.65	0.812	0.396	3.5e-20
UNIPROTKB|F1S6Q7	168	ATP5D "ATP synthase subunit de	0.655	0.779	0.373	3.1e-19
ASPGD|ASPL0000058102	166	AN10032 [Emericella nidulans (	0.73	0.879	0.350	4e-19
UNIPROTKB|P05630	168	ATP5D "ATP synthase subunit de	0.685	0.815	0.364	6.5e-19
UNIPROTKB|F1PY24	168	ATP5D "Uncharacterized protein	0.68	0.809	0.357	6.5e-19
ZFIN|ZDB-GENE-030131-7649	159	atp5d "ATP synthase, H+ transp	0.645	0.811	0.364	8.3e-19
MGI|MGI:1913293	168	Atp5d "ATP synthase, H+ transp	0.675	0.803	0.369	1.1e-18
RGD|621372	168	Atp5d "ATP synthase, H+ transp	0.675	0.803	0.362	3.6e-18

TAIR|locus:2171022 AT5G47030 [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 139/170 (81%), Positives = 159/170 (93%)

Query:    31 VDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMV 90
             +DSTFVE+WKKV PNM+PP+TPS +M PRP TP+SIP+KLTVNFVLPY SEL+ KEVDMV
Sbjct:    34 LDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMV 93

Query:    91 IVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEA 150
             I+PASTGQMGVLPGHVPTIAELKPG++SVH+G D KKYF+SSGFAF+HANSVADIIAVEA
Sbjct:    94 IIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEA 153

Query:   151 VPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG 200
             VP+D IDPS VQKGLAEF QKL+SATTDLEKAEAQIGV+VHSA+N+AL+G
Sbjct:   154 VPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAINAALSG 203

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS;IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

DICTYBASE|DDB_G0269038 atp5D "ATP synthase F1 delta" [Dictyostelium discoideum (taxid:44689)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 49/126 (38%), Positives = 77/126 (61%)

Query:    70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKY 128
             LT + + P+ +    K+  +V +P + G  GV   HVP IAELKPGV+ + H+  D +K+
Sbjct:    37 LTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKF 96

Query:   129 FVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGV 188
             F+S GFAF++ ++   I  +EAVPIDQ+D   V+ GLA + Q  + A  +  KA A IG+
Sbjct:    97 FISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVALIGL 156

Query:   189 DVHSAL 194
             + +  +
Sbjct:   157 ETYQQM 162

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;ISS

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;ISS

GO:0005756 "mitochondrial proton-transporting ATP synthase, central stalk" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000002162 ATP16 "Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 52/131 (39%), Positives = 80/131 (61%)

Query:    68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
             S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK
Sbjct:    30 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 89

Query:   128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
             +F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I 
Sbjct:    90 FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQ 148

Query:   188 VDVHSALNSAL 198
             V+V   L S L
Sbjct:   149 VEVLENLQSVL 159

GO:0005756 "mitochondrial proton-transporting ATP synthase, central stalk" evidence=ISS;IDA;IMP;IPI

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;ISS;IDA;IMP;IPI

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;ISS;IDA;IMP;IPI

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA;IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;IDA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

UNIPROTKB|F1S6Q7 ATP5D "ATP synthase subunit delta, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 50/134 (37%), Positives = 75/134 (55%)

Query:    67 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGND 124
             P +++  F  P     +   V  V VP  TG  G+L  HVPT+  L+PG++ VH  DG  
Sbjct:    35 PGQMSFTFASPTQVFFNGANVRQVDVPTQTGAFGILASHVPTLQVLRPGLVVVHAEDGT- 93

Query:   125 TKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 184
             T KYFVSSG   ++A+S   ++A EAV +D +DP + +  L +   +L  A  +  +AE 
Sbjct:    94 TSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDPGVAKANLEKAQSELLGAADEASRAEI 153

Query:   185 QIGVDVHSALNSAL 198
             QI ++ + AL  AL
Sbjct:   154 QIRIEANEALVKAL 167

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

ASPGD|ASPL0000058102 AN10032 [Emericella nidulans (taxid:162425)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 53/151 (35%), Positives = 90/151 (59%)

Query:    52 PSVYMTP--RPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTI 109
             P+ +  P  R     ++  K+ ++ VLP+ +   + +V  V +PA +G+MGVL  HVP+I
Sbjct:    16 PAAFRVPLQRRGYAEAVNDKIKLSLVLPHQTIFRSTDVVQVNIPAESGEMGVLANHVPSI 75

Query:   110 AELKPGVLS-VHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEF 168
              +LKPG++  V +G  +KK+F+S GFA +  +S   I AVE  P++      V+  LAE 
Sbjct:    76 EQLKPGLVEIVEEGGASKKFFLSGGFAVVQPDSQLSINAVEGFPLEDFSAENVRAQLAEA 135

Query:   169 NQKLSSAT-TDLEKAEAQIGVDVHSALNSAL 198
              QK++S   ++ + AEA+I ++V  +L + L
Sbjct:   136 -QKIASGNGSEQDIAEAKIEIEVLESLQAVL 165

GO:0005756 "mitochondrial proton-transporting ATP synthase, central stalk" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|P05630 ATP5D "ATP synthase subunit delta, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 51/140 (36%), Positives = 77/140 (55%)

Query:    61 QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH 120
             Q P + P +++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++ VH
Sbjct:    29 QAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVH 88

Query:   121 --DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTD 178
               DG  T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A  +
Sbjct:    89 AEDGT-TSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADE 147

Query:   179 LEKAEAQIGVDVHSALNSAL 198
               +AE QI ++ + AL  AL
Sbjct:   148 ATRAEIQIRIEANEALVKAL 167

GO:0045259 "proton-transporting ATP synthase complex" evidence=IDA

GO:0015992 "proton transport" evidence=IDA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IDA

GO:0005740 "mitochondrial envelope" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|F1PY24 ATP5D "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 49/137 (35%), Positives = 75/137 (54%)

Query:    63 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDG 122
             P + P +++  F  P     +   V  V VP  TG  G+L  HVPT+  L+PG++ VH  
Sbjct:    31 PAAAPGQMSFTFASPTQVFFNGANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAE 90

Query:   123 NDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEK 181
             + T  KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +LS A  +  +
Sbjct:    91 DGTISKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDVGAAKMNLEKAQSELSGAADEASR 150

Query:   182 AEAQIGVDVHSALNSAL 198
             AE QI ++ + AL  AL
Sbjct:   151 AEIQIRIEANEALVKAL 167

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

ZFIN|ZDB-GENE-030131-7649 atp5d "ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit" [Danio rerio (taxid:7955)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 50/137 (36%), Positives = 82/137 (59%)

Query:    67 PS-KLTVNFVLP---YASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HD 121
             PS +++  F  P   +  E S K++D   VP  TG  G+LP HVPT+  L+PGV++V +D
Sbjct:    25 PSAQMSFTFASPTEVFFKEASVKQID---VPTLTGAFGILPAHVPTLQVLRPGVVTVFND 81

Query:   122 GNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEK 181
                +KKYFVSSG   ++A+S   ++A EA P++ +D +  +  L +   +L SA+ +  +
Sbjct:    82 DGSSKKYFVSSGSVTVNADSSVQLLAEEAFPLESLDVAAAKANLEKAQSELVSASDEATR 141

Query:   182 AEAQIGVDVHSALNSAL 198
             AE  I ++ + A+  AL
Sbjct:   142 AEVLISIEANEAIVKAL 158

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

MGI|MGI:1913293 Atp5d "ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 51/138 (36%), Positives = 76/138 (55%)

Query:    63 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-- 120
             P + P +++  F  P      +  V  V VP  TG  G+L  HVPT+  L+PG++ VH  
Sbjct:    31 PAAGPGQMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTE 90

Query:   121 DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLE 180
             DG  TK YFVSSG   ++A+S   ++A EAV +D +D    +  L +   +LS A  +  
Sbjct:    91 DGTTTK-YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAA 149

Query:   181 KAEAQIGVDVHSALNSAL 198
             +AE QI ++ + AL  AL
Sbjct:   150 RAEIQIRIEANEALVKAL 167

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005740 "mitochondrial envelope" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISO

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0045259 "proton-transporting ATP synthase complex" evidence=ISO

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

RGD|621372 Atp5d "ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 50/138 (36%), Positives = 74/138 (53%)

Query:    63 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-- 120
             P + P +++  F  P         V  V VP  TG  G+L  HVPT+  L+PG++ VH  
Sbjct:    31 PAAGPGQMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAE 90

Query:   121 DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLE 180
             DG  TK YFVSSG   ++A+S   ++A E V +D +D    +  L +   +LS A  +  
Sbjct:    91 DGTTTK-YFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADEAA 149

Query:   181 KAEAQIGVDVHSALNSAL 198
             +AE QI ++ + AL  AL
Sbjct:   150 RAEIQIRIEANEALVKAL 167

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA;ISO;IDA

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=TAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;TAS

GO:0016887 "ATPase activity" evidence=ISO;IMP

GO:0032403 "protein complex binding" evidence=IDA

GO:0045259 "proton-transporting ATP synthase complex" evidence=TAS

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA;IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;TAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41000	ATP4_PEA	No assigned EC number	0.7114	0.98	0.9949	N/A	no
Q96252	ATP4_ARATH	No assigned EC number	0.7560	0.99	0.9753	yes	no
Q40089	ATP4_IPOBA	No assigned EC number	0.77	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd12152	123	cd12152, F1-ATPase_delta, mitochondrial ATP syntha	2e-37
pfam02823	80	pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsi	7e-24
COG0355	135	COG0355, AtpC, F0F1-type ATP synthase, epsilon sub	8e-24
TIGR01216	130	TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon	1e-21
PRK00571	135	PRK00571, atpC, F0F1 ATP synthase subunit epsilon;	1e-21
PRK13446	136	PRK13446, atpC, F0F1 ATP synthase subunit epsilon;	2e-19
CHL00063	134	CHL00063, atpE, ATP synthase CF1 epsilon subunit	2e-15
PRK14736	133	PRK14736, atpC, F0F1 ATP synthase subunit epsilon;	3e-14
PRK13443	136	PRK13443, atpC, F0F1 ATP synthase subunit epsilon;	1e-11
PRK13444	127	PRK13444, atpC, F0F1 ATP synthase subunit epsilon;	1e-10
PRK14735	139	PRK14735, atpC, F0F1 ATP synthase subunit epsilon;	3e-09
PRK13449	88	PRK13449, atpC, F0F1 ATP synthase subunit epsilon;	3e-09
PRK13448	135	PRK13448, atpC, F0F1 ATP synthase subunit epsilon;	8e-09
PRK13442	89	PRK13442, atpC, F0F1 ATP synthase subunit epsilon;	2e-07
PRK13451	101	PRK13451, atpC, F0F1 ATP synthase subunit epsilon;	6e-07
PRK01474	112	PRK01474, atpC, F0F1 ATP synthase subunit epsilon;	4e-06
PRK13450	132	PRK13450, atpC, F0F1 ATP synthase subunit epsilon;	5e-05
PRK13452	145	PRK13452, atpC, F0F1 ATP synthase subunit epsilon;	3e-04

>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit

 Score =  125 bits (317), Expect = 2e-37
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKY 128
           L +  V P     S  EV+ V++P + G+ G+LPGH P +  LKPGVL + D   + K +
Sbjct: 1   LKLEIVTPERVFFS-GEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYF 59

Query: 129 FVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGV 188
            VS GF  +  N V  I+A EA   + ID    ++ L    ++L+ A  + EKA A+  +
Sbjct: 60  AVSGGFLEVTPNRV-TILADEAERPEDIDVERAEEALERAEERLAQAKDEREKARAEAAL 118

Query: 189 DVHSA 193
           +   A
Sbjct: 119 ERALA 123

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit. Length = 123

>gnl|CDD|217242 pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain, beta-sandwich domain

 Score = 89.8 bits (224), Expect = 7e-24
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKY 128
           L +  V P     S  EV+MV+ P + G+ G+LPGH P +  LKPGVL +  +  + +K 
Sbjct: 1   LKLEIVTPERVVFS-GEVEMVVAPGTEGEFGILPGHAPLLTALKPGVLRIKTEDGEEEKI 59

Query: 129 FVSSGFAFIHANSVADIIAVEA 150
            VS GF  +  N V  I+A EA
Sbjct: 60  AVSGGFLEVQPNEV-TILADEA 80

Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213). Length = 80

>gnl|CDD|223432 COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]

 Score = 91.2 bits (227), Expect = 8e-24
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK--K 127
           L +  V P     S  EV  V+VP + G++G+LPGH P I  LKPGV+ +   +  K  K
Sbjct: 4   LKLEIVSPEGIIYS-GEVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEK 62

Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
             VS GF  +   +   I+A  A   D ID +  ++      ++L SA  D +   A+  
Sbjct: 63  IAVSGGFLEV-QPNEVTILADSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAA 121

Query: 188 VDV 190
           +  
Sbjct: 122 LAR 124

Length = 135

>gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta in mitochondria)

 Score = 85.4 bits (212), Expect = 1e-21
 Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 69  KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKK 127
            L +  V P     S  EV+ VI+P S G++G+LPGH P I  LKPGV+ +   G+D + 
Sbjct: 1   TLKLEIVTPEGEIYS-GEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEH 59

Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQ 185
             VS GFA +  + V  I+A  AV  D ID +  +K L    + L SA  D + AEA 
Sbjct: 60  IAVSGGFAEVQPDKV-TILADGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEAL 116

This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation [Energy metabolism, ATP-proton motive force interconversion]. Length = 130

>gnl|CDD|234796 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated

 Score = 85.2 bits (212), Expect = 1e-21
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKY 128
           LTV+ V P     S  EV+ V+VP + G++G+LPGH P +  LKPGV+ +  D  + +  
Sbjct: 4   LTVDIVSPEGLIYSG-EVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVI 62

Query: 129 FVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQI 186
            VS GF  +  + V  ++A  A   D ID +  ++      + L +   D++ A AQ 
Sbjct: 63  AVSGGFLEVQPDKV-TVLADSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQA 119

Length = 135

>gnl|CDD|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 69  KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKY 128
           KL +  V P    LS  EVD V  P   G+ GVLPGH P +  LK G L+   G  T   
Sbjct: 4   KLKLEIVTPEKKVLSE-EVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYV 62

Query: 129 FVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGV 188
            V+ GFA +  N V  ++A  A   ++ID    +  L    Q+L   T + + A A+   
Sbjct: 63  AVNGGFAEVSNNKVT-VLAETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAA- 120

Query: 189 DVHSALN 195
            +  AL 
Sbjct: 121 -LERALI 126

Length = 136

>gnl|CDD|214351 CHL00063, atpE, ATP synthase CF1 epsilon subunit

 Score = 69.1 bits (170), Expect = 2e-15
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 85  KEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVAD 144
            EV+ +I+P ++GQ+GVLP H P    L  GVL +   +      +  GFA I  N +  
Sbjct: 17  SEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEI-- 74

Query: 145 IIAV-EAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQI 186
            I V +A     IDP   Q+ L      L  A    +K EA +
Sbjct: 75  TILVNDAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANL 117

Length = 134

>gnl|CDD|173198 PRK14736, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 66.4 bits (162), Expect = 3e-14
 Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 6/110 (5%)

Query: 82  LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHAN 140
           L + EV+ V +P S G+M VLPGH P +  LK GV++V +     K+ +V  GFA I   
Sbjct: 15  LYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPT 74

Query: 141 SVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAE---AQIG 187
           SV  ++A  A P++++ P ++ + +    +    AT DL+K E   AQI 
Sbjct: 75  SVT-VLAERAAPVEELTPEMIDREIEAV-EMERDATQDLDKREALNAQIV 122

Length = 133

>gnl|CDD|237388 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 31/97 (31%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 82  LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANS 141
           L++ +   V +P + G M  + GH PTI  L+PG+L  H  + T++Y V+ GFA I+A S
Sbjct: 16  LASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATS 75

Query: 142 VADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTD 178
           ++ ++A +A+P++++  +++ + +AE  +  S A  +
Sbjct: 76  IS-VLAEKAIPVEELTGAVLDEFIAEARELASVALPE 111

Length = 136

>gnl|CDD|139576 PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 69  KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKY 128
           KLTV+ + P    L   EVD +IVP S G  G+LP H P +A L  G+L +  G   K+ 
Sbjct: 5   KLTVSVISP-EKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRI 63

Query: 129 FVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGV 188
            V  GF  +  N ++ I+       + ID    +K LAE  +   S + +L   + +  +
Sbjct: 64  SVEGGFCEVKDNQIS-ILTDHGALKEDIDHEHEKKLLAEAEKLPPSDSKNLLLQKTKTRI 122

Query: 189 DVHS 192
            V S
Sbjct: 123 LVAS 126

Length = 127

>gnl|CDD|173197 PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 84  AKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVA 143
           + +VDM+  P   G++G+LP H P +  L+PG L +        + +S GF  +  + V 
Sbjct: 16  SDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVT 75

Query: 144 DIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSA--TTDLEKAEAQI 186
            I+A  A   D+ID +  ++  AE  Q+        DL  AEA++
Sbjct: 76  -ILADTAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKL 119

Length = 139

>gnl|CDD|184058 PRK13449, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 69  KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGNDTK 126
           KL    V P    L + EVDMV+VP + G  GVL GH P +  L+ G ++V+  DG   +
Sbjct: 3   KLHFELVTP-ERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPE 61

Query: 127 KYFVSSGFAFIHANSVADIIAVEAV 151
            + V  GFA ++   +  I+A  AV
Sbjct: 62  VFHVQGGFAEVNEKGLT-ILAEHAV 85

Length = 88

>gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 86  EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADI 145
           EVD V +P   G  GVL GH P +A ++PG+L+V  G + +K  V  G A +    +  +
Sbjct: 19  EVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLT-V 77

Query: 146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTD-LEKAEAQIG--VDVHSALNSA 197
           +A  A  +  +D +     +AE   +L+    D L++A  ++     +   LN+ 
Sbjct: 78  LADVATSVADLDLAQFAATIAEMEAQLAGKVGDELDRAIERLDHFKSIQHQLNTT 132

Length = 135

>gnl|CDD|184055 PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
           L VN V      + + E  MV+   + G +G+LPGH P +  L+ G ++V      +   
Sbjct: 6   LHVNIVAA-DRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISA 64

Query: 130 -VSSGFAFIHANSVADIIAVE 149
            V  GF    +N +   +  E
Sbjct: 65  AVDGGFISFDSNKLT--VLAE 83

Length = 89

>gnl|CDD|172059 PRK13451, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
           + V  V PY      +E D V      G+MG+LP   P IA+L    + +  G+D  +Y 
Sbjct: 1   MKVKIVTPYGIVYD-RESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYK 59

Query: 130 VSSGFAFIHANSVADIIAVEAVPIDQIDP 158
           V+ GF      +V  II  EA   ++I P
Sbjct: 60  VADGFLHCDGKNVI-IITEEAGREEEISP 87

Length = 101

>gnl|CDD|100879 PRK01474, atpC, F0F1 ATP synthase subunit epsilon; Validated

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 85  KEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK---KYFVSSGFAFIHANS 141
           K+  MV +P   G  GVLP HVP I  LK G++ V+  +  K    Y +S G   +  N 
Sbjct: 19  KQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGNY 78

Query: 142 VADIIAVEAVPIDQIDPSLVQKGLAEFNQKLS 173
           + +I    A+ +  +  + +   L +  + LS
Sbjct: 79  I-NIATETAINVTNLSEAEIATKLLDLQKTLS 109

Length = 112

>gnl|CDD|184059 PRK13450, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 86  EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKY-FVSSGFAFIHANSVAD 144
           EV  VI     G + +LP HVP I  LKP +  + D N  KK  F SSG   +  N V  
Sbjct: 19  EVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYI 78

Query: 145 IIAVEAVPIDQID 157
           +      P ++ID
Sbjct: 79  LCDASEWP-EEID 90

Length = 132

>gnl|CDD|106409 PRK13452, atpC, F0F1 ATP synthase subunit epsilon; Provisional

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
           L V+ V P  S     E DMV +  S G+MG+  GH   ++ L  GV++V     T   +
Sbjct: 6   LKVDVVSPLGSVFKG-EADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLY 64

Query: 130 VSSG 133
           VS G
Sbjct: 65  VSGG 68

Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG1758	159	consensus Mitochondrial F1F0-ATP synthase, subunit	100.0
CHL00063	134	atpE ATP synthase CF1 epsilon subunit	100.0
PRK00539	133	atpC F0F1 ATP synthase subunit epsilon; Validated	100.0
PRK13446	136	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK00571	135	atpC F0F1 ATP synthase subunit epsilon; Validated	100.0
PRK13450	132	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK14736	133	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13452	145	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
TIGR01216	130	ATP_synt_epsi ATP synthase, F1 epsilon subunit (de	100.0
PRK14735	139	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13448	135	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
COG0355	135	AtpC F0F1-type ATP synthase, epsilon subunit (mito	100.0
PRK13444	127	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13443	136	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13451	101	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.97
PRK01474	112	atpC F0F1 ATP synthase subunit epsilon; Validated	99.97
PRK06228	131	F0F1 ATP synthase subunit epsilon; Validated	99.95
TIGR03166	122	alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit	99.95
PRK13447	136	F0F1 ATP synthase subunit epsilon; Provisional	99.94
PRK13442	89	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.94
PRK13449	88	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.93
PF02823	80	ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain,	99.92
PF00401	48	ATP-synt_DE: ATP synthase, Delta/Epsilon chain, lo	97.87

>KOG1758 consensus Mitochondrial F1F0-ATP synthase, subunit delta/ATP16 [Energy production and conversion]

Probab=100.00  E-value=1.6e-38  Score=255.57  Aligned_cols=139  Identities=52%  Similarity=0.725  Sum_probs=129.2

Q ss_pred             CCCCCCCCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEE-EEEecccEEEEEC
Q 029006           61 QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK-KYFVSSGFAFIHA  139 (200)
Q Consensus        61 ~~~~~~~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~-~~~VsgGf~~V~~  139 (200)
                      |++.+.+++|+|.|.+|++.+|...+|++|.+||.+|+||||+||+|+|+.|+||++.|+.+++++ +|||||||+.++.
T Consensus        20 p~a~s~~~~L~l~fa~P~~t~~~~a~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~~~~~k~FvSsGfa~v~~   99 (159)
T KOG1758|consen   20 PAAASIPEKLKLTFALPNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGSGTKSKYFVSSGFATVNA   99 (159)
T ss_pred             cccccCCceeEEEEecCceEEecCceeEEEeccccCcceeeecccCcchheeccceEEEEeCCCcEEEEEEecceEEEcC
Confidence            356778999999999999987755599999999999999999999999999999999999976666 9999999999996


Q ss_pred             CeEEEEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          140 NSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       140 n~v~~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~  199 (200)
                      |+..+|++.+++++|+||.+.+++.|++++++|.+++|+.++++|+|+++++++|++||+
T Consensus       100 ds~~~ila~EA~~ledid~~~a~q~Le~aqa~l~~a~de~~~AEA~I~vev~ealv~Al~  159 (159)
T KOG1758|consen  100 DSSLQILAEEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAEAQIRVEVAEALVKALK  159 (159)
T ss_pred             CCeEEEEehhccccccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhC
Confidence            655559999999999999999999999999999999999999999999999999999985

>CHL00063 atpE ATP synthase CF1 epsilon subunit

Probab=100.00  E-value=3.5e-35  Score=233.72  Aligned_cols=128  Identities=29%  Similarity=0.415  Sum_probs=121.8

Q ss_pred             eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006           69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV  148 (200)
Q Consensus        69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~  148 (200)
                      +|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+.++++++|+|+|||++|.+|+|+ |+++
T Consensus         2 ~l~l~IvtP~~~~~-~~~v~~V~~p~~~G~~gIL~~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~-Il~~   79 (134)
T CHL00063          2 TLNLRVLTPNRIVW-DSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEIT-ILVN   79 (134)
T ss_pred             eEEEEEEcCCceEE-eeeEEEEEEEcCccCceecCCCcceEeEecceEEEEEECCeEEEEEEcceEEEEECCEEE-EEEC
Confidence            59999999999755 899999999999999999999999999999999999888888899999999999999998 9999


Q ss_pred             ceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          149 EAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       149 ~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      .+++.+|||.+++++++++|+++|++..++.++.+++++|+++.++++++
T Consensus        80 ~a~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~ra~arl~~~  129 (134)
T CHL00063         80 DAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAI  129 (134)
T ss_pred             eeEchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888899999999999999988764

>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=100.00  E-value=5.6e-35  Score=232.61  Aligned_cols=127  Identities=15%  Similarity=0.171  Sum_probs=119.6

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII  146 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il  146 (200)
                      ++|+|+|+||++.+ |+++|++|++||++|+|||||||+|+|+.|.||+++|+. +++++.|+|+|||++|.+|+|+ |+
T Consensus         2 ~~~~l~IvTP~~~~-~~~~v~~V~l~t~~G~~gIL~~Haplit~L~~G~~~i~~~~~~~~~~~v~gGf~ev~~n~v~-Il   79 (133)
T PRK00539          2 QMLRFLVLSPSGIK-LDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAK-IF   79 (133)
T ss_pred             CccEEEEEcCCCeE-EeceEEEEEEecCccCceecCCCcceEeEecceEEEEEECCCcEEEEEEeeeEEEEECCEEE-EE
Confidence            47999999999975 589999999999999999999999999999999999987 7778889999999999999998 99


Q ss_pred             ccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHh
Q 029006          147 AVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNS  196 (200)
Q Consensus       147 a~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~  196 (200)
                      ++.|++.+|||.+++++++++|+++|++.+++.++.+||..|.++.+.++
T Consensus        80 ad~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ra~~Rl~  129 (133)
T PRK00539         80 TENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLMFELLKLS  129 (133)
T ss_pred             ECeEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988888899999999999988765

>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=1.2e-34  Score=231.05  Aligned_cols=129  Identities=30%  Similarity=0.419  Sum_probs=121.9

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEc
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIA  147 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila  147 (200)
                      ++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|.||+++|+.+++++.|+|+|||++|.+|+|+ |++
T Consensus         3 ~~l~l~IvTP~~~~-~~~~v~~V~lpt~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~-Il~   80 (136)
T PRK13446          3 KKLKLEIVTPEKKV-LSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVT-VLA   80 (136)
T ss_pred             CccEEEEEcCCceE-EeeeEEEEEEEcCccCeEEcCCCcceEEEeeccEEEEEeCCcEEEEEEcCEEEEEECCEEE-EEe
Confidence            57999999999976 4899999999999999999999999999999999999888888899999999999999998 999


Q ss_pred             cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      +.|++.++||.+++++++++|+++|++.+++.++.+++++|+.+.+.+.+.
T Consensus        81 ~~a~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~a~~rl~~~  131 (136)
T PRK13446         81 ETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQVA  131 (136)
T ss_pred             eeEEEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888899999999999999987754

>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=100.00  E-value=1.5e-34  Score=229.58  Aligned_cols=130  Identities=29%  Similarity=0.474  Sum_probs=122.8

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII  146 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il  146 (200)
                      ++|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||++|.+|.|+ |+
T Consensus         2 ~~l~l~ivtP~~~~~-~~~v~~v~~~~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n~v~-Il   79 (135)
T PRK00571          2 ATLTVDIVSPEGLIY-SGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVT-VL   79 (135)
T ss_pred             CeEEEEEEcCCCcEE-eeeEEEEEEEcCccCeeecCCCcceEEEeeceEEEEEECCCcEEEEEEccEEEEEECCEEE-EE
Confidence            479999999999765 89999999999999999999999999999999999998 6778899999999999999998 99


Q ss_pred             ccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          147 AVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       147 a~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~  199 (200)
                      ++.+++.++||.+++++++++|+++|++..++.++.+++++|+++.+.+.+..
T Consensus        80 a~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~~  132 (135)
T PRK00571         80 ADSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAE  132 (135)
T ss_pred             EeeEEEhhhCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988889999999999999999888753

>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=1.8e-34  Score=229.14  Aligned_cols=129  Identities=23%  Similarity=0.326  Sum_probs=120.6

Q ss_pred             CCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEE
Q 029006           67 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADI  145 (200)
Q Consensus        67 ~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~I  145 (200)
                      +++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||++|.+|+|+ |
T Consensus         1 ~~~l~l~IvtP~~~~-~~~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gGf~~v~~~~v~-I   78 (132)
T PRK13450          1 ANNIKLTILTPEKNF-YIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVY-I   78 (132)
T ss_pred             CCeEEEEEEcCCceE-EeceEEEEEEECCccCceecCCCcccEeEEccEEEEEEECCCcEEEEEEcCeEEEEECCEEE-E
Confidence            367999999999975 589999999999999999999999999999999999987 7888899999999999999998 9


Q ss_pred             EccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       146 la~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      +++.+++.++||.+++++++++|+++| +..++.++.+++.+|+++.+.+++.
T Consensus        79 l~~~a~~~~~ID~~~a~~~~~~A~~~l-~~~~~~~~~~a~~~l~ra~~rl~~~  130 (132)
T PRK13450         79 LCDASEWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIARIKLK  130 (132)
T ss_pred             EehhhcccccCCHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999 5668888999999999999988764

>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=2.1e-34  Score=229.36  Aligned_cols=128  Identities=26%  Similarity=0.486  Sum_probs=121.6

Q ss_pred             eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEEc
Q 029006           69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADIIA  147 (200)
Q Consensus        69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Ila  147 (200)
                      +|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||++|.+|+|+ |++
T Consensus         3 ~~~l~IvTP~~~~~-~~~v~~V~vp~~~G~~gILp~H~P~it~L~~G~l~i~~~~~~~~~~~v~gGf~eV~~n~v~-Ila   80 (133)
T PRK14736          3 TFHFDLVGPERTLY-SGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPTSVT-VLA   80 (133)
T ss_pred             ceEEEEEcCCccEE-eeeeEEEEEecCccCeeEcCCChhhEeEecceEEEEEECCCcEEEEEEeceEEEEECCEEE-EEe
Confidence            69999999999754 79999999999999999999999999999999999987 7788899999999999999998 999


Q ss_pred             cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      +.+++.++||.+++++++++|++.|+++.++..++.+++.+.++++....|
T Consensus        81 ~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (133)
T PRK14736         81 ERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEAKATL  131 (133)
T ss_pred             eeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998889999999999999999988765

>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=2.7e-34  Score=231.72  Aligned_cols=130  Identities=25%  Similarity=0.356  Sum_probs=120.6

Q ss_pred             CCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEE
Q 029006           67 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADII  146 (200)
Q Consensus        67 ~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Il  146 (200)
                      -++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+++++.|+|+|||++|.+|+|+ |+
T Consensus         3 ~~~l~l~IvtP~~~~-~~g~v~~V~lp~~~G~~GILp~H~plit~L~~G~l~i~~~~~~~~~~v~gGf~eV~~n~v~-Il   80 (145)
T PRK13452          3 KKYLKVDVVSPLGSV-FKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVT-IM   80 (145)
T ss_pred             ccEEEEEEEcCCceE-EeceeEEEEEEcCccCeEecCCCcceEeeecceEEEEEECCcEEEEEEcceEEEEECCEEE-EE
Confidence            478999999999975 5899999999999999999999999999999999999887788889999999999999998 99


Q ss_pred             ccceecCCCCCHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          147 AVEAVPIDQIDPSLVQKGLAEFNQKLSS-ATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       147 a~~a~~~deID~~~a~~~l~~Ae~~L~~-~~~~~eka~aqi~le~~~al~~al  198 (200)
                      ++.+++.++||.+++++++++|+++|++ ..++.++.+++..|+++.+.+.++
T Consensus        81 ad~ae~~~eID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~~~  133 (145)
T PRK13452         81 VDDMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLKAL  133 (145)
T ss_pred             eCeeeccccCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987 446677888999999999988764

>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria)

Probab=100.00  E-value=2.8e-34  Score=226.98  Aligned_cols=128  Identities=38%  Similarity=0.557  Sum_probs=121.8

Q ss_pred             eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEEc
Q 029006           69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADIIA  147 (200)
Q Consensus        69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Ila  147 (200)
                      +|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|.||+++|+. ++.+++|+|+|||++|.+|+|+ |++
T Consensus         1 ~~~l~IvtP~~~~-~~~~v~~v~~~t~~G~~giL~~H~p~i~~L~~G~v~i~~~~~~~~~~~v~gG~~~v~~~~v~-Il~   78 (130)
T TIGR01216         1 TLKLEIVTPEGEI-YSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVT-ILA   78 (130)
T ss_pred             CEEEEEEcCCceE-EeeeEEEEEEECCcCCeeecCCChhhEeEecceEEEEEECCCCEEEEEEcCcEEEEECCEEE-EEE
Confidence            5899999999975 579999999999999999999999999999999999996 7788999999999999999998 999


Q ss_pred             cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      +++++.++||.+++++.+++|+++|++..++.++.+++++|+++++++++.
T Consensus        79 ~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~  129 (130)
T TIGR01216        79 DGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEAL  129 (130)
T ss_pred             eEEEEcccCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998888999999999999999998875

This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.

>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=3.3e-34  Score=229.52  Aligned_cols=128  Identities=23%  Similarity=0.359  Sum_probs=120.3

Q ss_pred             eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006           69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV  148 (200)
Q Consensus        69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~  148 (200)
                      +|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+|++..|+|+|||++|.+|+|+ |+++
T Consensus         2 ~l~l~IvtP~~~~-~~~~v~~V~~p~~~G~~gILp~H~P~it~L~~G~v~i~~~g~~~~~~v~gGf~ev~~~~v~-Ila~   79 (139)
T PRK14735          2 PIHLEIVTAERVV-LSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVT-ILAD   79 (139)
T ss_pred             eEEEEEECCCccE-EeeeEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECCeEEEEEEcccEEEEeCCEEE-EEee
Confidence            5899999999975 5899999999999999999999999999999999999888888899999999999999998 9999


Q ss_pred             ceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          149 EAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       149 ~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      .|++.++||.+++++++++|+++|++..++.++.+++..|.++.+.+.+.
T Consensus        80 ~a~~~edID~~~a~~a~e~Ae~~l~~~~~~~~~~~a~~~L~ra~arl~~~  129 (139)
T PRK14735         80 TAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLRVA  129 (139)
T ss_pred             eEEEcccCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888888999999999998877753

>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=2.3e-33  Score=223.78  Aligned_cols=127  Identities=27%  Similarity=0.454  Sum_probs=115.6

Q ss_pred             eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006           69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV  148 (200)
Q Consensus        69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~  148 (200)
                      +|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+++++.|+|+|||++|.+|+|+ |+++
T Consensus         3 ~~~l~IvtPe~~~-~~~~v~~V~~p~~~G~~gILp~H~p~it~L~pG~v~i~~~~~~~~~~v~gGf~eV~~~~v~-Ila~   80 (135)
T PRK13448          3 TFHFDLVSPEKLA-FSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLT-VLAD   80 (135)
T ss_pred             eeEEEEEcCCccE-EeeeEEEEEEEcCccCeEEcCCCcceEeEeccEEEEEEECCcEEEEEEeccEEEEECCEEE-EEEe
Confidence            6999999999975 4799999999999999999999999999999999999887777889999999999999998 9999


Q ss_pred             ceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          149 EAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       149 ~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      .+++.+|||.+++++++++|+++|++.. +.+..+|..+|++++++..+|
T Consensus        81 ~a~~~~dID~~~a~~~~~~Ae~~l~~~~-~~~l~ra~~rl~~~~~~~~~~  129 (135)
T PRK13448         81 VATSVADLDLAQFAATIAEMEAQLAGKV-GDELDRAIERLDHFKSIQHQL  129 (135)
T ss_pred             eeEEcccCCHHHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999998643 345666666788899988876

>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]

Probab=100.00  E-value=4.3e-33  Score=222.47  Aligned_cols=127  Identities=31%  Similarity=0.479  Sum_probs=116.6

Q ss_pred             eEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-C-CeEEEEEecccEEEEECCeEEEEEc
Q 029006           70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-G-NDTKKYFVSSGFAFIHANSVADIIA  147 (200)
Q Consensus        70 l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~-~~~~~~~VsgGf~~V~~n~v~~Ila  147 (200)
                      |+|+||||++.+| +++|++|++||++|+|||||||+|+|+.|+||+++|+. + +++..|+|+|||++|.++.|+ |++
T Consensus         4 l~l~IVsP~~~i~-~g~v~~V~~~t~eGe~GILp~H~Plit~Lk~g~v~i~~~~~~~~~~i~VsgGfleV~~~~vt-Ila   81 (135)
T COG0355           4 LKLEIVSPEGIIY-SGEVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEKIAVSGGFLEVQPNEVT-ILA   81 (135)
T ss_pred             eEEEEEcCCceEE-eeEEEEEEEecCCeeeecCCCCccceeeecCcEEEEEEcCCCceEEEEEeccEEEEeCCEEE-EEE
Confidence            9999999999765 89999999999999999999999999999999999998 4 355799999999999999998 999


Q ss_pred             cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      +.|++.+|||.+++++++++|++.|++..++.++.+++.+|.+.-+.+.+.
T Consensus        82 d~A~~~~did~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~al~~L~~~  132 (135)
T COG0355          82 DSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAALARALARLRVA  132 (135)
T ss_pred             ceeEecccCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999998877778888888888777766653

>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=1e-32  Score=217.73  Aligned_cols=104  Identities=35%  Similarity=0.500  Sum_probs=99.9

Q ss_pred             eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006           69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV  148 (200)
Q Consensus        69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~  148 (200)
                      +|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.++++..|+|+|||++|.+|+|+ |+++
T Consensus         5 ~~~l~IvtP~~~~-~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~-Il~~   82 (127)
T PRK13444          5 KLTVSVISPEKIL-YKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQIS-ILTD   82 (127)
T ss_pred             ceEEEEEcCCceE-EeceEEEEEEECCccCeEecCCCcCeEeEeccEEEEEEECCeEEEEEEeceEEEEECCEEE-EEEe
Confidence            6999999999975 5799999999999999999999999999999999999888888899999999999999998 9999


Q ss_pred             ceecCCCCCHHHHHHHHHHHHHHHhc
Q 029006          149 EAVPIDQIDPSLVQKGLAEFNQKLSS  174 (200)
Q Consensus       149 ~a~~~deID~~~a~~~l~~Ae~~L~~  174 (200)
                      .+++.+|||.+++++++++|+++|++
T Consensus        83 ~a~~~~diD~~~a~~~~~~Ae~~l~~  108 (127)
T PRK13444         83 HGALKEDIDHEHEKKLLAEAEKLPPS  108 (127)
T ss_pred             EEEehhhCCHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999986

>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=100.00  E-value=7.4e-32  Score=215.60  Aligned_cols=109  Identities=30%  Similarity=0.560  Sum_probs=100.7

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEc
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIA  147 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila  147 (200)
                      ++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+++++.|+|+|||++|.+|+|+ |++
T Consensus         3 ~~l~l~IVTP~~~~-~~gev~~V~lpt~~Ge~GILp~H~Plit~L~pG~v~i~~~~~~~~~avsgGf~eV~~n~V~-Ila   80 (136)
T PRK13443          3 GTLQFDLVSPERRL-ASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATSIS-VLA   80 (136)
T ss_pred             CeeEEEEEcCCceE-EeceEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECCCeEEEEEcceEEEEECCEEE-EEe
Confidence            46999999999865 5899999999999999999999999999999999999875555669999999999999998 999


Q ss_pred             cceecCCCCCHHHHHHHHHHHHHHHhcCCCH
Q 029006          148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTD  178 (200)
Q Consensus       148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~  178 (200)
                      +.+++.+|||.+++++++++|+++|++.+++
T Consensus        81 d~a~~~edID~~~a~~a~~~Ae~~l~~~~~~  111 (136)
T PRK13443         81 EKAIPVEELTGAVLDEFIAEARELASVALPE  111 (136)
T ss_pred             CeeEEhhhCCHHHHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999975543

>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.97  E-value=9.4e-32  Score=204.88  Aligned_cols=100  Identities=29%  Similarity=0.460  Sum_probs=95.0

Q ss_pred             eEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEccc
Q 029006           70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVE  149 (200)
Q Consensus        70 l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~~  149 (200)
                      |+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+++++.|+|+|||++|.+|+|+ |++++
T Consensus         1 m~l~IvtP~~~~-~~~~v~~V~~pt~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~-Il~~~   78 (101)
T PRK13451          1 MKVKIVTPYGIV-YDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVI-IITEE   78 (101)
T ss_pred             CEEEEEcCCceE-EeceeEEEEEEcCccCeEEcCCCcceEEEecceEEEEEECCcEEEEEEeccEEEEECCEEE-EEEeE
Confidence            689999999975 5899999999999999999999999999999999999987778889999999999999998 99999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHH
Q 029006          150 AVPIDQIDPSLVQKGLAEFNQK  171 (200)
Q Consensus       150 a~~~deID~~~a~~~l~~Ae~~  171 (200)
                      +++.++||.+++++++++|++.
T Consensus        79 a~~~e~ID~~~a~~a~~~Ae~~  100 (101)
T PRK13451         79 AGREEEISPHRYLGARERVERV  100 (101)
T ss_pred             eEehhhCCHHHHHHHHHHhhcc
Confidence            9999999999999999999864

>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated

Probab=99.97  E-value=2.1e-31  Score=206.25  Aligned_cols=105  Identities=27%  Similarity=0.507  Sum_probs=98.3

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-C--CeEEEEEecccEEEEECCeEEE
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-G--NDTKKYFVSSGFAFIHANSVAD  144 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~--~~~~~~~VsgGf~~V~~n~v~~  144 (200)
                      ++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+. +  ++++.|+|+|||++|.+|+|+ 
T Consensus         3 ~~~~l~IvTP~~~~-~~~~v~~V~lp~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~~v~gGf~~v~~n~v~-   80 (112)
T PRK01474          3 ETILVKIITPLSIA-FEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGNYIN-   80 (112)
T ss_pred             ceEEEEEEcCCceE-EeeeEEEEEEEcCccCceecCCCcceEEEecceEEEEEECCCCCcEEEEEEcceEEEEECCEEE-
Confidence            47999999999975 589999999999999999999999999999999999985 3  467889999999999999998 


Q ss_pred             EEccceecCCCCCHHHHHHHHHHHHHHHhc
Q 029006          145 IIAVEAVPIDQIDPSLVQKGLAEFNQKLSS  174 (200)
Q Consensus       145 Ila~~a~~~deID~~~a~~~l~~Ae~~L~~  174 (200)
                      |+++.+++.++||.+++++++++|+++|+.
T Consensus        81 Ila~~a~~~~~ID~~~a~~~~~~A~~~l~~  110 (112)
T PRK01474         81 IATETAINVTNLSEAEIATKLLDLQKTLSD  110 (112)
T ss_pred             EEeCeeEEhhhCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999874

>PRK06228 F0F1 ATP synthase subunit epsilon; Validated

Probab=99.95  E-value=1.7e-27  Score=189.40  Aligned_cols=101  Identities=18%  Similarity=0.322  Sum_probs=91.1

Q ss_pred             eeEEEEEcCCceeeccCc-eeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006           69 KLTVNFVLPYASELSAKE-VDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII  146 (200)
Q Consensus        69 ~l~L~IvTP~~~~~~~~~-V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il  146 (200)
                      +|+|+|+||++.+| +++ |++|++||.+|+|||||||+|+|+.|.||+++|+. ++++++|+|+|||++|.+|+|+ |+
T Consensus         2 ~~~l~IvTP~~~~~-~g~~v~~V~lpt~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~ev~~n~V~-Il   79 (131)
T PRK06228          2 SMNLKILLPFEVFA-EKKGVTRIVAETREGSFGLLPHRLDCVAALVPGILVYETEAEGEVYVAVDEGILVKTGPDVL-VS   79 (131)
T ss_pred             ceEEEEEcCCeeEE-CCCcEEEEEEEcCccCeEECCCCcceEeeecceEEEEEECCCcEEEEEEcceEEEEECCEEE-EE
Confidence            58999999999765 788 99999999999999999999999999999999987 7788899999999999999998 99


Q ss_pred             ccceecCCCCCHHHHHHHHHHHHHHHh
Q 029006          147 AVEAVPIDQIDPSLVQKGLAEFNQKLS  173 (200)
Q Consensus       147 a~~a~~~deID~~~a~~~l~~Ae~~L~  173 (200)
                      ++.|++.+|||  +..+.++++.+.+.
T Consensus        80 ad~ae~~edid--~~~~~l~~~~~~~~  104 (131)
T PRK06228         80 VRNAIGGTDLG--ELREAVEQEFLTLD  104 (131)
T ss_pred             EceeEchhhHH--HHHHHHHHHHHhhh
Confidence            99999999875  67777777755444

>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon

Probab=99.95  E-value=1.2e-26  Score=182.32  Aligned_cols=99  Identities=20%  Similarity=0.348  Sum_probs=87.8

Q ss_pred             EEEEEcCCceeecc-CceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEEcc
Q 029006           71 TVNFVLPYASELSA-KEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADIIAV  148 (200)
Q Consensus        71 ~L~IvTP~~~~~~~-~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Ila~  148 (200)
                      +|+|+||++.+ |+ ++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++++|+|||+++.+|+|+ |+++
T Consensus         1 ~l~IvtP~~~~-~~~~~v~~v~~~~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~~v~~n~v~-Il~~   78 (122)
T TIGR03166         1 RLKILTPFRVF-LDKLPVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGADVE-VSVR   78 (122)
T ss_pred             CeEEECCCeeE-EecCcEEEEEEEcCcCCeEEcCCCcCeEeEeccEEEEEEECCCcEEEEEEeeeEEEEECCEEE-EEec
Confidence            58999999965 57 9999999999999999999999999999999999986 7788889999999999999998 9999


Q ss_pred             ceecCCCCCHHHHHHHHHHHHHHHh
Q 029006          149 EAVPIDQIDPSLVQKGLAEFNQKLS  173 (200)
Q Consensus       149 ~a~~~deID~~~a~~~l~~Ae~~L~  173 (200)
                      .|++.++||  +++++++.+..++.
T Consensus        79 ~ae~~edId--~l~~~i~~~~~~~~  101 (122)
T TIGR03166        79 NAVGGTELE--ELEEAVRQEFLTLD  101 (122)
T ss_pred             eeEcccCHH--HHHHHHHHHHHHHH
Confidence            999999995  55556666555443

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.

>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.94  E-value=3e-26  Score=183.26  Aligned_cols=99  Identities=19%  Similarity=0.268  Sum_probs=86.5

Q ss_pred             eEEEEEcCCceeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEE-CCeEEEEE
Q 029006           70 LTVNFVLPYASELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIH-ANSVADII  146 (200)
Q Consensus        70 l~L~IvTP~~~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~-~n~v~~Il  146 (200)
                      |+|+|+||++.+| ++ +|.+|.+||.+|+|||||||+|+|+.|.||+++|+. ++++++|+|+|||++|. +|+|+ |+
T Consensus         1 ~~L~IVTP~~~~~-~g~~v~~V~~~t~~G~~GILp~HaPlit~L~~G~l~i~~~~g~~~~~aVsGGfleV~~~n~V~-Il   78 (136)
T PRK13447          1 LRLTIATPLAVVV-DELDIVSLRAEDASGGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGGARVE-IA   78 (136)
T ss_pred             CEEEEEcCCeeEE-CCCcEEEEEecCCcCceEEcCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEecCCEEE-EE
Confidence            6899999999765 66 599999999999999999999999999999999987 77888999999999999 89998 99


Q ss_pred             ccceecCCCCCHHHHHHHHHHHHHHH
Q 029006          147 AVEAVPIDQIDPSLVQKGLAEFNQKL  172 (200)
Q Consensus       147 a~~a~~~deID~~~a~~~l~~Ae~~L  172 (200)
                      ++.|++.+|||..+  +.++.+..++
T Consensus        79 ad~ae~~edID~~~--a~i~~~~~~~  102 (136)
T PRK13447         79 CREAVLGEDLARLE--AVVRAVRAAQ  102 (136)
T ss_pred             eceeEchhhcCHHH--HHHHHHHHhh
Confidence            99999999999544  4444444433

>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.94  E-value=2.2e-26  Score=171.65  Aligned_cols=85  Identities=28%  Similarity=0.481  Sum_probs=79.6

Q ss_pred             CCeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEE
Q 029006           67 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADI  145 (200)
Q Consensus        67 ~~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~I  145 (200)
                      .++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||+++.+|+++ |
T Consensus         3 ~~~~~l~IvtP~~~~-~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n~v~-I   80 (89)
T PRK13442          3 GATLHVNIVAADRPV-WSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLT-V   80 (89)
T ss_pred             CCEEEEEEEcCCccE-EeceeEEEEEECCcCCcEecCCCcCeEEEEcceEEEEEECCCcEEEEEEccEEEEEECCEEE-E
Confidence            467999999999975 589999999999999999999999999999999999987 7788899999999999999998 9


Q ss_pred             EccceecC
Q 029006          146 IAVEAVPI  153 (200)
Q Consensus       146 la~~a~~~  153 (200)
                      +++.|++.
T Consensus        81 l~~~ae~~   88 (89)
T PRK13442         81 LAERAELV   88 (89)
T ss_pred             EEeEEEEC
Confidence            99999874

>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional

Probab=99.93  E-value=7e-26  Score=168.69  Aligned_cols=84  Identities=35%  Similarity=0.592  Sum_probs=77.0

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CC-eEEEEEecccEEEEECCeEEEE
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GN-DTKKYFVSSGFAFIHANSVADI  145 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~-~~~~~~VsgGf~~V~~n~v~~I  145 (200)
                      ++|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++ ++++|+|+|||++|.+|+|+ |
T Consensus         2 ~~l~l~IvtP~~~~-~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~v~gGf~~v~~n~v~-I   79 (88)
T PRK13449          2 AKLHFELVTPERLL-RSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFHVQGGFAEVNEKGLT-I   79 (88)
T ss_pred             CeeEEEEEcCCceE-EccEEEEEEEeCCccCeEEcCCCcceEEEeeceEEEEEECCCCeEEEEEEcceEEEEECCEEE-E
Confidence            57999999999865 589999999999999999999999999999999999986 54 47789999999999999998 9


Q ss_pred             EccceecC
Q 029006          146 IAVEAVPI  153 (200)
Q Consensus       146 la~~a~~~  153 (200)
                      +++.|+..
T Consensus        80 l~~~ae~~   87 (88)
T PRK13449         80 LAEHAVEA   87 (88)
T ss_pred             EcceeEEc
Confidence            99998753

>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.92  E-value=5.6e-25  Score=160.03  Aligned_cols=79  Identities=41%  Similarity=0.703  Sum_probs=73.8

Q ss_pred             eEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEEcc
Q 029006           70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADIIAV  148 (200)
Q Consensus        70 l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Ila~  148 (200)
                      |+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|.||+++|+. ++++++|+|+|||+++.+|+|. |+++
T Consensus         1 l~l~IvtP~~~~~-~~~v~~v~~~t~~G~~gIl~~H~p~i~~l~~G~~~i~~~~~~~~~~~v~~G~~~v~~n~v~-Il~~   78 (80)
T PF02823_consen    1 LKLKIVTPDGIFF-EGEVESVVLPTTDGEFGILPNHAPFITALKPGELRIKDADGEEKKFAVSGGFLEVKDNEVT-ILAD   78 (80)
T ss_dssp             EEEEEEESSSEEE-EEEESEEEEEBSSSEEEEETTS-SEEEEEESEEEEEEESSSEEEEEEESSEEEEEETSEEE-EEES
T ss_pred             CEEEEEcCCceEE-eeEEEEEEEECCCcChhhccCCchhheeccceEEEEEEcCCCEEEEEEcCEEEEEECCEEE-EEEc
Confidence            7899999999764 79999999999999999999999999999999999996 8899999999999999999998 9998


Q ss_pred             ce
Q 029006          149 EA  150 (200)
Q Consensus       149 ~a  150 (200)
                      +|
T Consensus        79 ~A   80 (80)
T PF02823_consen   79 EA   80 (80)
T ss_dssp             SE
T ss_pred             cC
Confidence            75

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 2WSS_H 1E79_H 2JDI_H 2W6I_H 2W6H_H 2W6J_H 2CK3_H 2V7Q_H 1H8E_H 2XND_H ....

>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.87  E-value=3.1e-05  Score=51.53  Aligned_cols=46  Identities=24%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          154 DQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       154 deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~  199 (200)
                      +|||.++|++.+++|++.|++.+++.++.++++.|.++.+.+.+..
T Consensus         1 ~dID~~rA~~a~~~Ae~~l~~~~~~~e~~~A~~~L~rA~aRl~~~~   46 (48)
T PF00401_consen    1 EDIDEERAEEAKERAEERLEKAKSDKEYARAQAALKRAIARLQAAK   46 (48)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCSSCSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999998888899999999999999998864

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
3oe7_H	137	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		3e-20
4b2q_H	132	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		3e-20
2hld_H	138	Crystal Structure Of Yeast Mitochondrial F1-Atpase		4e-20
2xok_H	160	Refined Structure Of Yeast F1c10 Atpase Complex To		5e-20
2xnd_H	131	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		1e-15
2w6i_H	168	Low Resolution Structures Of Bovine Mitochondrial F		1e-15
1e79_H	146	Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcar		2e-15
2rq7_A	134	Solution Structure Of The Epsilon Subunit Chimera C		2e-08
2e5y_A	133	Epsilon Subunit And Atp Complex Of F1f0-Atp Synthas		3e-07
2rq6_A	138	Solution Structure Of The Epsilon Subunit Of The F1		8e-05
2qe7_H	135	Crystal Structure Of The F1-Atpase From The Thermoa		1e-04
1aqt_A	138	Molecular Architecture Of The Rotary Motor In Atp S		5e-04
1bsh_A	138	Solution Structure Of The Epsilon Subunit Of The F1		6e-04

>pdb|3OE7|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 137

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 68  SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
           S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK
Sbjct: 7   SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 66
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
           +F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I 
Sbjct: 67  FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQ 125
Query: 188 VDVHSALNSAL 198
           V+V   L S L
Sbjct: 126 VEVLENLQSVL 136

>pdb|4B2Q|H Chain H, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 132

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 68  SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
           S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK
Sbjct: 2   SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 61
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
           +F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I 
Sbjct: 62  FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQ 120
Query: 188 VDVHSALNSAL 198
           V+V   L S L
Sbjct: 121 VEVLENLQSVL 131

>pdb|2HLD|H Chain H, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 138

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 68  SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
           S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK
Sbjct: 8   SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 67
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
           +F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I 
Sbjct: 68  FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQ 126
Query: 188 VDVHSALNSAL 198
           V+V   L S L
Sbjct: 127 VEVLENLQSVL 137

>pdb|2XOK|H Chain H, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 160

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
           L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK+F
Sbjct: 32  LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFF 91
Query: 130 VSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVD 189
           +S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I V+
Sbjct: 92  ISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EAAEAAIQVE 150
Query: 190 VHSALNSAL 198
           V   L S L
Sbjct: 151 VLENLQSVL 159

>pdb|2XND|H Chain H, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 131

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 69  KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGNDTK 126
           +++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++ VH  DG  T 
Sbjct: 1   QMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGT-TS 59
Query: 127 KYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQI 186
           KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A  +  +AE QI
Sbjct: 60  KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQI 119
Query: 187 GVDVHSALNSAL 198
            ++ + AL  AL
Sbjct: 120 RIEANEALVKAL 131

>pdb|2W6I|H Chain H, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 4b. Length = 168

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGNDTKK 127
           ++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++ VH  DG  T K
Sbjct: 38  MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGT-TSK 96
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
           YFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A  +  +AE QI 
Sbjct: 97  YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIR 156
Query: 188 VDVHSALNSAL 198
           ++ + AL  AL
Sbjct: 157 IEANEALVKAL 167

>pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcarbodiimide) Length = 146

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH--DGNDTKK 127
           ++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++ VH  DG  T K
Sbjct: 16  MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGT-TSK 74
Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIG 187
           YFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A  +  +AE QI 
Sbjct: 75  YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIR 134
Query: 188 VDVHSALNSAL 198
           ++ + AL  AL
Sbjct: 135 IEANEALVKAL 145

>pdb|2RQ7|A Chain A, Solution Structure Of The Epsilon Subunit Chimera Combining The N-Terminal Beta-Sandwich Domain From T. Elongatus Bp-1 F1 And The C-Terminal Alpha-Helical Domain From Spinach Chloroplast F1 Length = 134

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 90  VIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVE 149
           VI+P++TGQ+G+L  H P +  L+ GV+ V    +     +  GFA +  N V  I+   
Sbjct: 22  VILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVT-ILVNG 80
Query: 150 AVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAE-AQIGVDVHSALNSALT 199
           A   D IDP        E  Q L  A  +L KAE A+  ++ + AL  A T
Sbjct: 81  AERGDTIDPQ-------EAQQTLEIAEANLRKAEGARQKIEANLALRRART 124

>pdb|2E5Y|A Chain A, Epsilon Subunit And Atp Complex Of F1f0-Atp Synthase From The Thermophilic Bacillus Ps3 Length = 133

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 86  EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADI 145
           +V+MV V A +G++G+LPGH+P +A L+     +  G  T+   VS GF  +  + V  I
Sbjct: 19  DVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQYIAVSGGFLEVRPDKVT-I 77
Query: 146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNS 196
           +A  A   + ID    +       ++L S   D++   A++   +  A+N 
Sbjct: 78  LAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELA--LKRAMNR 126

>pdb|2RQ6|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-Atpase From Thermosynechococcus Elongatus Bp-1 Length = 138

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 90  VIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADII 146
           VI+P++TGQ+G+L  H P +  L+ GV+ V    +     +  GFA +  N V  ++
Sbjct: 22  VILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVTILV 78

>pdb|2QE7|H Chain H, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 135

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 86  EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADI 145
           E D+VI     G++GV+ GH+P +  LK   + +  G+      VS GF  +  + V +I
Sbjct: 19  EADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKETLIAVSGGFLEVRPDKV-NI 77
Query: 146 IAVEAVPIDQIDPSLVQKGLAEFN---QKLSSATTD-------LEKAEAQIGV 188
           +A  A   ++ID    +K  A      ++L     D       LE+AE ++ V
Sbjct: 78  LADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEVRLQV 130

>pdb|1AQT|A Chain A, Epsilon Subunit Of F1f0-Atp Synthase From Escherichia Coli Length = 138

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 87  VDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKY-FVSSGFAFIHANSVADI 145
           V+ + V  S G++G+ PGH P +  +KPG++ +   +  +++ ++S G   +   +V  +
Sbjct: 20  VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVT-V 78
Query: 146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 184
           +A  A+    +D +   +   +  + +SS+  D++ A+A
Sbjct: 79  LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQA 117

>pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1- Atpsynthase From Escherichia Coli And Orientation Of The Subunit Relative To The Beta Subunits Of The Complex Length = 138

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 87  VDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKY-FVSSGFAFIHANSVADI 145
           V+ + V  S G++G+ PGH P +  +KPG++ +   +  +++ ++S G   +   +V  +
Sbjct: 20  VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVT-V 78
Query: 146 IAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 184
           +A  A+    +D +   +   +  + +SS+  D++ A+A
Sbjct: 79  LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQA 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3oee_H	138	ATP synthase subunit delta; ATP phosphatase, F1F0	4e-45
2xok_H	160	ATP synthase; hydrolase, ATP-binding, F(O), F(1),	1e-44
2w6j_H	168	F1-ATPase delta subunit; ATP phosphorylase (H+ tra	1e-43
2ck3_H	146	ATP synthase subunit delta\, mitochondrial; hydrol	2e-43
2e5y_A	133	ATP synthase epsilon chain; F1FO ATP synthase, F1-	7e-36
1aqt_A	138	ATP synthase; hydrolase, ATPase, epsilon subunit;	1e-31
2qe7_H	135	ATP synthase subunit epsilon; blockage of ATP hydr	2e-27
2rq6_A	138	ATP synthase epsilon chain; F1FO ATP synthase, F1-	7e-27

>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* Length = 138

 Score =  145 bits (367), Expect = 4e-45
 Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 62  TPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD 121
              +  S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +
Sbjct: 2   EAAAASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVME 61

Query: 122 GNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEK 181
           G+++KK+F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E 
Sbjct: 62  GSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EA 120

Query: 182 AEAQIGVDVHSALNSAL 198
           AEA I V+V   L S L
Sbjct: 121 AEAAIQVEVLENLQSVL 137

>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 160

 Score =  144 bits (366), Expect = 1e-44
 Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 62  TPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD 121
              +  S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +
Sbjct: 24  EAAAASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVME 83

Query: 122 GNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEK 181
           G+++KK+F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E 
Sbjct: 84  GSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAR-EA 142

Query: 182 AEAQIGVDVHSALNSAL 198
           AEA I V+V   L S L
Sbjct: 143 AEAAIQVEVLENLQSVL 159

>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H Length = 168

 Score =  142 bits (360), Expect = 1e-43
 Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 58  PRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVL 117
              Q P + P +++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++
Sbjct: 26  AAAQAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLV 85

Query: 118 SVHD-GNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSAT 176
            VH     T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A 
Sbjct: 86  VVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAA 145

Query: 177 TDLEKAEAQIGVDVHSALNSAL 198
            +  +AE QI ++ + AL  AL
Sbjct: 146 DEATRAEIQIRIEANEALVKAL 167

>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H* Length = 146

 Score =  141 bits (356), Expect = 2e-43
 Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 58  PRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVL 117
              Q P + P +++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++
Sbjct: 4   AAAQAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLV 63

Query: 118 SVHD-GNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSAT 176
            VH     T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A 
Sbjct: 64  VVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAA 123

Query: 177 TDLEKAEAQIGVDVHSALNSAL 198
            +  +AE QI ++ + AL  AL
Sbjct: 124 DEATRAEIQIRIEANEALVKAL 145

>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A Length = 133

 Score =  121 bits (306), Expect = 7e-36
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 68  SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
             + V+ V P        +V+MV V A +G++G+LPGH+P +A L+     +  G  T+ 
Sbjct: 2   KTIHVSVVTPDGPVYE-DDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQY 60

Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQI 186
             VS GF  +  + V  I+A  A   + ID    +       ++L S   D++   A++
Sbjct: 61  IAVSGGFLEVRPDKV-TILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAEL 118

>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H* Length = 138

 Score =  110 bits (278), Expect = 1e-31
 Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 68  SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGND-TK 126
           S   ++ V       S   V+ + V  S G++G+ PGH P +  +KPG++ +   +   +
Sbjct: 2   STYHLDVVSAEQQMFS-GLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEE 60

Query: 127 KYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQI 186
             ++S G   +   +V  ++A  A+    +D +   +   +  + +SS+  D++ A+A  
Sbjct: 61  FIYLSGGILEVQPGNV-TVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASA 119

Query: 187 GVDVHSALNSAL 198
            +    A    +
Sbjct: 120 ELAKAIAQLRVI 131

>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 135

 Score =  100 bits (250), Expect = 2e-27
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 68  SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
           + + V+ V P        E D+VI     G++GV+ GH+P +  LK   + +  G+    
Sbjct: 2   ATVQVDIVTPERKVFQ-GEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKETL 60

Query: 128 YFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSAT-TDLEKAEAQI 186
             VS GF  +  + V +I+A  A   ++ID    +K  A     L     TD +    + 
Sbjct: 61  IAVSGGFLEVRPDKV-NILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKR 119

>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A Length = 138

 Score = 98.6 bits (246), Expect = 7e-27
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 70  LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYF 129
           +TV  + P  +       + VI+P++TGQ+G+L  H P +  L+ GV+ V    +     
Sbjct: 3   MTVRVIAPDKTVWD-APAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIA 61

Query: 130 VSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSA-TTDLEKAEAQIGV 188
           +  GFA +  N V  I+   A   D ID    +   A     L+ A   + ++A+ Q   
Sbjct: 62  LMGGFAEVENNEV-TILVNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQ 120

Query: 189 DVHSALN 195
               A  
Sbjct: 121 AFRRARA 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
2xok_H	160	ATP synthase; hydrolase, ATP-binding, F(O), F(1),	100.0
2w6j_H	168	F1-ATPase delta subunit; ATP phosphorylase (H+ tra	100.0
1aqt_A	138	ATP synthase; hydrolase, ATPase, epsilon subunit;	100.0
2e5y_A	133	ATP synthase epsilon chain; F1FO ATP synthase, F1-	100.0
2rq6_A	138	ATP synthase epsilon chain; F1FO ATP synthase, F1-	100.0
3oee_H	138	ATP synthase subunit delta; ATP phosphatase, F1F0	100.0
2ck3_H	146	ATP synthase subunit delta\, mitochondrial; hydrol	100.0
2qe7_H	135	ATP synthase subunit epsilon; blockage of ATP hydr	100.0

>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-40  Score=267.19  Aligned_cols=157  Identities=36%  Similarity=0.577  Sum_probs=113.1

Q ss_pred             ChhHHHHHHHHhhhh-hhhhhccccCCCCCCCchhHHHhhhhcCCCCCCCCCCCcccCCCCCCCCCCCCeeEEEEEcCCc
Q 029006            1 MFRQASRLLARASAV-TRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYA   79 (200)
Q Consensus         1 ~~r~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~IvTP~~   79 (200)
                      |||....+...++.. ..+|+|++++.+                                       +++|+|+|+||++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~---------------------------------------~~~l~l~IVtPe~   41 (160)
T 2xok_H            1 MLRSIIGKSASRSLNFVAKRSYAEAAAA---------------------------------------SSGLKLQFALPHE   41 (160)
T ss_dssp             ------------------------------------------------------------------------CCCBCSSC
T ss_pred             CchhhccchhHHHhhhhhhhhhhhhccC---------------------------------------CCeEEEEEEcCCe
Confidence            888887776655554 357999886643                                       5679999999999


Q ss_pred             eeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECC-eEEEEEccceecCCCCC
Q 029006           80 SELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHAN-SVADIIAVEAVPIDQID  157 (200)
Q Consensus        80 ~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n-~v~~Ila~~a~~~deID  157 (200)
                      .+| ++ +|++|++||.+|+|||||||+|+|+.|+||+++|+.+|++++|+|+|||++|.+| +|+ |+++.|++.+|||
T Consensus        42 ~~~-~~~~v~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~g~~~~~aV~gGf~eV~~~n~Vt-Ila~~A~~~~dID  119 (160)
T 2xok_H           42 TLY-SGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLC-VTAIEAFPLESFS  119 (160)
T ss_dssp             BCC-C--CCSEEEEECSSSEEEEESSCCCCEEEECSSCEEECSSSCCEEECCCCEEEEECTTSCEE-EEESCC-CCTTTC
T ss_pred             eEE-cCCcEEEEEEECCccCeEecCCCccceeEecceEEEEEECCEEEEEEEcCeEEEEeCCCeEE-EEeeeeEehhhCC
Confidence            764 66 8999999999999999999999999999999999887788999999999999987 898 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          158 PSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       158 ~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~  199 (200)
                      .+++++++++|+++|++. ++.++++|++.|++++++++||.
T Consensus       120 ~~~A~~a~~~Ae~~l~~~-~~~d~~~A~~~L~~a~~l~~al~  160 (160)
T 2xok_H          120 QENIKNLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQSVLK  160 (160)
T ss_dssp             -CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999988 88999999999999999999974

>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H

Probab=100.00  E-value=8.3e-40  Score=268.31  Aligned_cols=132  Identities=36%  Similarity=0.567  Sum_probs=80.4

Q ss_pred             CCCeeEEEEEcCCceeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEEC-CeE
Q 029006           66 IPSKLTVNFVLPYASELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHA-NSV  142 (200)
Q Consensus        66 ~~~~l~L~IvTP~~~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~-n~v  142 (200)
                      .+++|+|+|+||++.+| ++ +|++|++||.+|+|||||||+|+|+.|+||+++|+. +|+++.|+|+|||++|++ |+|
T Consensus        34 ~~~~~~l~IVtPe~~~~-~~~~V~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~~g~~~~~~V~gGf~eV~~~n~V  112 (168)
T 2w6j_H           34 GPGQMSFTFASPTQVFF-NSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSV  112 (168)
T ss_dssp             -----CCCEECSSCEEE-C-----CCBCCC-----------------CCSBCCBC----------CBCSBC---------
T ss_pred             CCCeEEEEEEcCCeeEE-cCCcEEEEEEeCCccCccccCCCcceEeEecceEEEEEECCCcEEEEEEeCCeEEEecCCeE
Confidence            36779999999999765 65 899999999999999999999999999999999986 778899999999999987 489


Q ss_pred             EEEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          143 ADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       143 ~~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~  199 (200)
                      + |+++.+++.+|||.+++++++++|+++|++.+++.+++++++.|++++++++||.
T Consensus       113 t-Ila~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~  168 (168)
T 2w6j_H          113 Q-LLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE  168 (168)
T ss_dssp             C-EEBSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred             E-EEecccCccccCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            8 9999999999999999999999999999998899999999999999999999974

>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*

Probab=100.00  E-value=4.2e-36  Score=238.92  Aligned_cols=129  Identities=20%  Similarity=0.362  Sum_probs=122.5

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII  146 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il  146 (200)
                      ++|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+. +|+++.|+|+|||++|.+|.|+ |+
T Consensus         2 ~tl~l~ivtP~~~~~-~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~g~~~~~~v~gGf~ev~~~~vt-Il   79 (138)
T 1aqt_A            2 STYHLDVVSAEQQMF-SGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVT-VL   79 (138)
T ss_dssp             CCEEEEEEESSCEEE-EEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEE-EE
T ss_pred             CEEEEEEEcCCceEE-eeeEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEECCEEE-EE
Confidence            459999999999765 79999999999999999999999999999999999997 7888999999999999999998 99


Q ss_pred             ccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          147 AVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       147 a~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      ++.|++.+|||.+++++++++|+++|++.+++.++++|++.|.++.+++++.
T Consensus        80 a~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~arl~~~  131 (138)
T 1aqt_A           80 ADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVI  131 (138)
T ss_dssp             ESSEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888999999999999999988774

>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A

Probab=100.00  E-value=2.7e-36  Score=238.70  Aligned_cols=130  Identities=26%  Similarity=0.411  Sum_probs=122.9

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEc
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIA  147 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila  147 (200)
                      .+|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+.+|++++|+|+|||++|.+|.|+ |++
T Consensus         2 ~~~~l~ivtP~~~~~-~~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vt-Ila   79 (133)
T 2e5y_A            2 KTIHVSVVTPDGPVY-EDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQYIAVSGGFLEVRPDKVT-ILA   79 (133)
T ss_dssp             CCEEEEEEETTEEEE-EEEESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEEE-EEE
T ss_pred             CceEEEEEcCCceEE-eceEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCeEEEEECCEEE-EEE
Confidence            359999999999765 799999999999999999999999999999999999988899999999999999999998 999


Q ss_pred             cceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          148 VEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       148 ~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~  199 (200)
                      +.|++.+|||.+++++++++|+++|++.+++.++++|++.|.++.+.+++..
T Consensus        80 ~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~~rl~~~~  131 (133)
T 2e5y_A           80 QAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRLSVAE  131 (133)
T ss_dssp             SSEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999988888899999999999999888753

>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A

Probab=100.00  E-value=9.6e-36  Score=236.94  Aligned_cols=128  Identities=27%  Similarity=0.360  Sum_probs=121.0

Q ss_pred             eEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEccc
Q 029006           70 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVE  149 (200)
Q Consensus        70 l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~~  149 (200)
                      |+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+.+|+++.|+|+|||++|.+|.|+ |+++.
T Consensus         3 l~l~ivtP~~~~~-~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vt-Ila~~   80 (138)
T 2rq6_A            3 MTVRVIAPDKTVW-DAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVT-ILVNG   80 (138)
T ss_dssp             EEEEEECSSSEEE-EEEESEEEECCTTSCEEEESSCCSEEEEECSEEEEEESSSCEEEEEECSEEEEECSSCEE-EEESC
T ss_pred             eEEEEEcCCceEE-eeeEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEECCeEEEEEEcCcEEEEECCEEE-EEEee
Confidence            9999999999765 799999999999999999999999999999999999988889999999999999999998 99999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHhHHHHHHHHhhhc
Q 029006          150 AVPIDQIDPSLVQKGLAEFNQKLSSAT---TDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       150 a~~~deID~~~a~~~l~~Ae~~L~~~~---~~~eka~aqi~le~~~al~~al~  199 (200)
                      |++.+|||.+++++++++|+++|++.+   ++.++++|++.|+++.+++++..
T Consensus        81 A~~~~dID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~arl~~~~  133 (138)
T 2rq6_A           81 AERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQAAG  133 (138)
T ss_dssp             EECSTTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEhhhCCHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998765   77889999999999999888753

>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*

Probab=100.00  E-value=9.3e-38  Score=248.55  Aligned_cols=131  Identities=38%  Similarity=0.644  Sum_probs=114.6

Q ss_pred             CCCeeEEEEEcCCceeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECC-eEE
Q 029006           66 IPSKLTVNFVLPYASELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHAN-SVA  143 (200)
Q Consensus        66 ~~~~l~L~IvTP~~~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n-~v~  143 (200)
                      .+++|+|+|+||++.+| ++ +|++|++||.+|+|||||||+|+|+.|+||+++|+.+|++++|+|+|||++|.+| .|+
T Consensus         6 ~~~~l~l~IvtP~~~~~-~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~g~~~~~~V~gGf~eV~~~~~v~   84 (138)
T 3oee_H            6 ASSGLKLQFALPHETLY-SGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLC   84 (138)
T ss_dssp             -----CEEEECSSCBCC-C--CCSCEECCCSSSCCEECTTCCCCEEEECSEEEEECSSSCCEEEEECCEEEEECTTSCEE
T ss_pred             CCCcEEEEEEcCCeeEE-cCCcEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCeEEEEeCCCEEE
Confidence            46789999999999865 56 9999999999999999999999999999999999877888999999999999987 788


Q ss_pred             EEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          144 DIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       144 ~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~  199 (200)
                       |++++|++.+|||.+++++++++|+++|++ .++..+++|+++|+++++|.+||.
T Consensus        85 -Ila~~A~~~~eiD~~~A~~a~e~Ae~~l~~-~~~~~~a~A~~~l~~~~~l~~al~  138 (138)
T 3oee_H           85 -VTAIEAFPLESFSQENIKNLLAEAKKNVSS-SDAREAAEAAIQVEVLENLQSVLK  138 (138)
T ss_dssp             -EECSCC-CCSSCC-CCSSSSTTHHHHHTSC-SSSSGGGTTTHHHHHHHTTSCC--
T ss_pred             -EEeccccchhhCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhhC
Confidence             999999999999999999999999999986 566789999999999999999874

>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*

Probab=100.00  E-value=6.5e-38  Score=251.74  Aligned_cols=136  Identities=36%  Similarity=0.578  Sum_probs=80.4

Q ss_pred             CCCCCCCeeEEEEEcCCceeeccC-ceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEEC
Q 029006           62 TPTSIPSKLTVNFVLPYASELSAK-EVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHA  139 (200)
Q Consensus        62 ~~~~~~~~l~L~IvTP~~~~~~~~-~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~  139 (200)
                      .|++.+++|+|+|+||++.+| ++ +|++|++||.+|+|||||||+|+|+.|+||+++|+. +|+++.|+|+|||++|.+
T Consensus         8 ~~~~~~~~l~l~IvtP~~~~~-~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~~g~~~~~~v~gGf~eV~~   86 (146)
T 2ck3_H            8 APAAGPGQMSFTFASPTQVFF-NSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNA   86 (146)
T ss_dssp             ---------CCCEECSSCEEE-C-----CCBCCC-----------------CCSBCCBC----------CBCSBC-----
T ss_pred             CCCCcCCeEEEEEEcCCeeEE-cCCcEEEEEEECCccCeeccCCCcceEeEecceEEEEEECCCcEEEEEEeCCEEEEeC
Confidence            344557889999999999765 65 899999999999999999999999999999999986 778899999999999987


Q ss_pred             C-eEEEEEccceecCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          140 N-SVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       140 n-~v~~Ila~~a~~~deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al~  199 (200)
                      | +|+ |+++.+++.+|||.+++++++++|+++|++.+++.++++|++.|++++++++||+
T Consensus        87 ~~~Vt-Ila~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~  146 (146)
T 2ck3_H           87 DSSVQ-LLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE  146 (146)
T ss_dssp             ----C-EEBSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred             CCEEE-EEeceeEehhhCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            7 898 9999999999999999999999999999998899999999999999999999974

>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}

Probab=100.00  E-value=3.4e-36  Score=238.63  Aligned_cols=129  Identities=24%  Similarity=0.348  Sum_probs=121.2

Q ss_pred             eeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEeCCeEEEEEecccEEEEECCeEEEEEcc
Q 029006           69 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAV  148 (200)
Q Consensus        69 ~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~~~~~~~~~VsgGf~~V~~n~v~~Ila~  148 (200)
                      +|+|+|+||++.+ |+++|++|++||.+|+|||||||+|+|+.|+||+++|+.++++++|+|+|||++|.+|.|+ |+++
T Consensus         3 ~~~l~ivtP~~~~-~~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vt-Ila~   80 (135)
T 2qe7_H            3 TVQVDIVTPERKV-FQGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKETLIAVSGGFLEVRPDKVN-ILAD   80 (135)
T ss_dssp             CCEEEEBCSSCBC-CCSCCSCEEECBSSSCEEECSCCCCCCCCBCSSCCCBCTTSCCBCCBCCSCCEEECSSEEE-ECCS
T ss_pred             ceEEEEEcCCceE-EeceEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCcEEEEECCEEE-EEEe
Confidence            5999999999975 5799999999999999999999999999999999999987778899999999999999998 9999


Q ss_pred             ceecCCCCCHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhHHHHHHHHhhhc
Q 029006          149 EAVPIDQIDPSLVQKGLAEFNQKLSSA-TTDLEKAEAQIGVDVHSALNSALT  199 (200)
Q Consensus       149 ~a~~~deID~~~a~~~l~~Ae~~L~~~-~~~~eka~aqi~le~~~al~~al~  199 (200)
                      .|++.+|||.+++++++++|+++|++. +++.++++|++.|.++.+.+++..
T Consensus        81 ~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~~a~~al~rA~~rl~~~~  132 (135)
T 2qe7_H           81 TAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEVRLQVAN  132 (135)
T ss_dssp             SCBCTTTSCHHHHHHHHHTTTTTTTTCCSSSSSTTTSTTTHHHHTHHHHTTS
T ss_pred             eeEEhhhCCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999987 788899999999999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d2jdih2	85	b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP sy	5e-23
d1aqta2	85	b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synt	4e-16

>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 85

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.0 bits (213), Expect = 5e-23
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 71  TVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYF 129
           +  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYF
Sbjct: 1   SFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYF 60

Query: 130 VSSGFAFIHANSVADIIAVEAVPID 154
           VSSG   ++A+S   ++A EAV +D
Sbjct: 61  VSSGSVTVNADSSVQLLAEEAVTLD 85

>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]} Length = 85

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.2 bits (167), Expect = 4e-16
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 68  SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKK 127
           S   ++ V       S   V+ + V  S G++G+ PGH P +  +KPG++ +   +  ++
Sbjct: 1   STYHLDVVSAEQQMFS-GLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEE 59

Query: 128 Y-FVSSGFAFIHANSVADIIAVEAV 151
           + ++S G   +   +V  ++A  A+
Sbjct: 60  FIYLSGGILEVQPGNV-TVLADTAI 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1aqta2	85	Epsilon subunit of F1F0-ATP synthase N-terminal do	99.94
d2jdih2	85	Epsilon subunit of F1F0-ATP synthase N-terminal do	99.9
d1aqta1	50	Epsilon subunit of F1F0-ATP synthase C-terminal do	97.51
d2jdih1	44	Epsilon subunit of F1F0-ATP synthase C-terminal do	97.29

>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.3e-27  Score=170.31  Aligned_cols=83  Identities=23%  Similarity=0.480  Sum_probs=78.1

Q ss_pred             CeeEEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECCeEEEEE
Q 029006           68 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHANSVADII  146 (200)
Q Consensus        68 ~~l~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n~v~~Il  146 (200)
                      ++|+|+|+||++.+| +++|++|++|+.+|+|||||||+|+|+.|.||+++|+. +++++.|+|+|||++|.+|+|+ |+
T Consensus         1 ~Tf~l~IvtP~~~~~-~~~v~~v~~~~~~G~~gIL~~H~p~i~~L~~g~v~i~~~~~~~~~~~v~gG~~~v~~n~v~-Il   78 (85)
T d1aqta2           1 STYHLDVVSAEQQMF-SGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVT-VL   78 (85)
T ss_dssp             CCEEEEEEESSCEEE-EEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEE-EE
T ss_pred             CeEEEEEECCCceEE-eeEEEEEEEECCcCCEEEcCCCcceeEEecCCEEEEEECCCCEEEEEEcccEEEEECCEEE-EE
Confidence            579999999999765 79999999999999999999999999999999999987 7788899999999999999998 99


Q ss_pred             ccceec
Q 029006          147 AVEAVP  152 (200)
Q Consensus       147 a~~a~~  152 (200)
                      ++.|++
T Consensus        79 ~~~A~r   84 (85)
T d1aqta2          79 ADTAIR   84 (85)
T ss_dssp             ESSEEE
T ss_pred             Eeeeec
Confidence            999875

>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4e-26  Score=165.81  Aligned_cols=83  Identities=42%  Similarity=0.689  Sum_probs=39.2

Q ss_pred             EEEEEcCCceeeccCceeEEEEecCccceeccCCCcceeeeecCeEEEEEe-CCeEEEEEecccEEEEECC-eEEEEEcc
Q 029006           71 TVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHD-GNDTKKYFVSSGFAFIHAN-SVADIIAV  148 (200)
Q Consensus        71 ~L~IvTP~~~~~~~~~V~~V~lpt~~GeiGVLpgH~P~It~L~pGvl~I~~-~~~~~~~~VsgGf~~V~~n-~v~~Ila~  148 (200)
                      +|+|+||++.+|.+++|++|++|+.+|+|||||||+|+|+.|+||+++|+. ++++++|+|+|||++|.+| .|+ |+++
T Consensus         1 sl~i~TP~~~~~~~~~v~~V~~p~~~G~~gIL~~H~p~i~~L~~G~l~i~~~~g~~~~~~v~gGf~eV~~~~~v~-Ilae   79 (85)
T d2jdih2           1 SFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQ-LLAE   79 (85)
T ss_dssp             CCCEECSSCEEEC-----CCCCCC-----------------CCSBCCCC----------CBCSBC---------C-EEBS
T ss_pred             CeEEECCCceeECCCcEEEEEEECCcccEEECCCCccceeeeeCCEEEEEECCCcEEEEEECCCeEEEeCCCEEE-EEee
Confidence            368999999876458999999999999999999999999999999999986 7788899999999999865 577 9999


Q ss_pred             ceecCC
Q 029006          149 EAVPID  154 (200)
Q Consensus       149 ~a~~~d  154 (200)
                      +|++.|
T Consensus        80 ~A~~iD   85 (85)
T d2jdih2          80 EAVTLD   85 (85)
T ss_dssp             SBCCSS
T ss_pred             eeEeCc
Confidence            988764

>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Epsilon subunit of F1F0-ATP synthase C-terminal domain
family: Epsilon subunit of F1F0-ATP synthase C-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=8.6e-05  Score=47.63  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          154 DQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       154 deID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      +|||..++++++.+|++.|++..++.++++++..|..+-+.+.++
T Consensus         1 edlDearA~eAk~~AEe~l~~~~~d~dy~~a~a~La~A~AqL~~i   45 (50)
T d1aqta1           1 QDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVI   45 (50)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999998888775

>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Epsilon subunit of F1F0-ATP synthase C-terminal domain
family: Epsilon subunit of F1F0-ATP synthase C-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.29  E-value=4e-05  Score=47.08  Aligned_cols=43  Identities=28%  Similarity=0.383  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHHHHhhh
Q 029006          156 IDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL  198 (200)
Q Consensus       156 ID~~~a~~~l~~Ae~~L~~~~~~~eka~aqi~le~~~al~~al  198 (200)
                      +|...++..|++|+..|..++|+..|+++||+++..+++++||
T Consensus         2 ld~~aak~nlekaqsel~~asdeaarae~~i~ieaneaivkal   44 (44)
T d2jdih1           2 LDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL   44 (44)
T ss_dssp             CCCSHHHHHHHHHHHHSSSCCCSSSSHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHhhHHHHHHHHhccchHHhhhhheeeehhhHHHHhhC
Confidence            5777899999999999999999999999999999999999986