Citrus Sinensis ID: 029023

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MFSTLKFQSANPTIDHDFNNYSFSRHHGCSLHRLPLYLRPPLRFRRLSAQSEYAASSEPSVSSHYTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPSGGSEPENWTN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccccccc
Coil and Loop (DISEMBL)
mfstlkfqsanptidhdfnnysfsrhhgcslhrlplylrpplrfrrlsaqseyaassepsvsshyttsvgsssssslqlSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLtnmnpsggsepenwtn
Flexible Loop (DISEMBL)
mfstlkfqsanptiDHDFNNYSFSRHHGCSLHRLPLYLRPPLRFRRLSAQSEyaassepsvsshyTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQeitqgvrsstkavRIAEerlrqltnmnpsggsepenwtn
Low Complexity Region (SEG)
MFSTLKFQSANPTIDHDFNNYSFSRHHGCSLHrlplylrpplrfrrlSAQSEYAASSEPsvsshyttsvgsssssslqlsqWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPSGGSEPENWTN
Disordered region (IsUnstruct)
*************IDHDFNNYSFSRHHGCSLHRLPLYLRPPLRFR*********************************LSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDV**********************************************************************
Disordered Region (DISOPRED)
***********************************************************************************LTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTME*********************************************
Disordered Region (DISEMBL)
MFSTLKFQSANPTIDHDFNNYSFSRHHGCSLHRLPLYLRPPLRFRRLSA*****************************LSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMN************
Disordered Region (DISPRO)
*****KFQSANPTIDHDFNNYSFSRHHGCSL************************************SVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERL**L****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFSTLKFQSANPTIDHDFNNYSFSRHHGCSLHRLPLYLRPPLRFRRLSAQSEYAASSEPSVSSHYTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTxxxxxxxxxxxxxxxxxxxxxLPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPSGGSEPENWTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
224093856	204	predicted protein [Populus trichocarpa]	0.635	0.622	0.866	1e-56
449448560	288	PREDICTED: uncharacterized protein LOC10	0.84	0.583	0.678	1e-54
449521900	247	PREDICTED: uncharacterized protein LOC10	0.84	0.680	0.678	2e-54
21553624	205	unknown [Arabidopsis thaliana]	0.925	0.902	0.562	9e-54
18416143	205	uncharacterized protein [Arabidopsis tha	0.925	0.902	0.562	1e-53
42573327	256	uncharacterized protein [Arabidopsis tha	0.91	0.710	0.570	2e-53
42573325	257	uncharacterized protein [Arabidopsis tha	0.885	0.688	0.579	4e-53
297811099	257	hypothetical protein ARALYDRAFT_487824 [	0.875	0.680	0.601	2e-52
296082495	266	unnamed protein product [Vitis vinifera]	0.94	0.706	0.683	3e-51
217426818	256	AT5G09995-like protein [Arabidopsis aren	0.9	0.703	0.579	3e-51

>gi|224093856|ref|XP_002310021.1| predicted protein [Populus trichocarpa] gi|222852924|gb|EEE90471.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/127 (86%), Positives = 117/127 (92%)

Query: 65  YTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESL 124
           Y  +VG  SSS LQLSQWNLTHRH+LVLNVIACAAAVSATWLF SAIPTLLA K AAESL
Sbjct: 20  YIETVGLPSSSVLQLSQWNLTHRHVLVLNVIACAAAVSATWLFLSAIPTLLAFKRAAESL 79

Query: 125 EKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184
           EKLMDVTREELP+TMAAVRLSGMEISDLTMELSDLGQEITQGVRSST+AVR+AEERLRQL
Sbjct: 80  EKLMDVTREELPDTMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTRAVRVAEERLRQL 139

Query: 185 TNMNPSG 191
           TN+ P+ 
Sbjct: 140 TNITPTA 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448560|ref|XP_004142034.1| PREDICTED: uncharacterized protein LOC101204218 [Cucumis sativus]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 134/171 (78%), Gaps = 3/171 (1%)

Query: 31  LHRLPLYLRPPLRFRRLSAQSEYAAS-SEPSVSSHYTTSVGSSSSSSLQLSQWNLTHRHI 89
            +RLP  L  P   R+L + S  A S S+PS SS YT ++G+SS + LQ  Q  LT RHI
Sbjct: 69  FYRLPYNLGLP--NRQLPSLSIRAQSLSDPSTSSRYTDTIGTSSPAFLQFPQCTLTQRHI 126

Query: 90  LVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEI 149
           LVLNV+ACA A+SATWLF SAIPTLLA K AAESLEKLMDVTREE+P TMAA+RLSGMEI
Sbjct: 127 LVLNVVACATAISATWLFCSAIPTLLAFKRAAESLEKLMDVTREEIPGTMAAIRLSGMEI 186

Query: 150 SDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPSGGSEPENWTN 200
           SDLTMELSDLGQ ITQGVRSST+AVR+AEERLR+LTNM+P+   +    TN
Sbjct: 187 SDLTMELSDLGQGITQGVRSSTRAVRVAEERLRRLTNMSPTASVQEMTITN 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521900|ref|XP_004167967.1| PREDICTED: uncharacterized protein LOC101228813 [Cucumis sativus]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 134/171 (78%), Gaps = 3/171 (1%)

Query: 31  LHRLPLYLRPPLRFRRLSAQSEYAAS-SEPSVSSHYTTSVGSSSSSSLQLSQWNLTHRHI 89
            +RLP  L  P   R+L + S  A S S+PS SS YT ++G+SS + LQ  Q  LT RHI
Sbjct: 28  FYRLPYNLGLP--NRQLPSLSIRAQSLSDPSTSSRYTDTIGTSSPAFLQFPQCTLTQRHI 85

Query: 90  LVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEI 149
           LVLNV+ACA A+SATWLF SAIPTLLA K AAESLEKLMDVTREE+P TMAA+RLSGMEI
Sbjct: 86  LVLNVVACATAISATWLFCSAIPTLLAFKRAAESLEKLMDVTREEIPGTMAAIRLSGMEI 145

Query: 150 SDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPSGGSEPENWTN 200
           SDLTMELSDLGQ ITQGVRSST+AVR+AEERLR+LTNM+P+   +    TN
Sbjct: 146 SDLTMELSDLGQGITQGVRSSTRAVRVAEERLRRLTNMSPTASVQEMTITN 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553624|gb|AAM62717.1| unknown [Arabidopsis thaliana]

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 148/215 (68%), Gaps = 30/215 (13%)

Query: 1   MFSTLKFQSA------NPTIDHDF--NNYSFSRHHGCSLHRLPLYLRPPLRFRRLSAQSE 52
           +FS  K QS       NP + + F   N SF R       R+ L L  P+   RL+  S+
Sbjct: 2   LFSPSKLQSPQSLISWNPILHNGFIDKNLSFRR-------RVTLRLASPIS--RLTKGSD 52

Query: 53  YAASS----------EPSVSSHYTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVS 102
             ASS          EPS+SS  T+SVG      LQLSQW  T +H ++LNV+AC  A+S
Sbjct: 53  SIASSTPSALYSNPQEPSISSQLTSSVGQPP---LQLSQWTFTQKHFVLLNVVACVTAIS 109

Query: 103 ATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQE 162
           A+WLFF+AIPTLLA K AAESLEKL+DVTREELP+TMAAVRLSGMEISDLTMELSDLGQ 
Sbjct: 110 ASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQG 169

Query: 163 ITQGVRSSTKAVRIAEERLRQLTNMNPSGGSEPEN 197
           ITQGV+SST+A+R+AE+RLR+LTNMNP G +  ++
Sbjct: 170 ITQGVKSSTRAIRVAEDRLRRLTNMNPGGDASTQD 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416143|ref|NP_568225.1| uncharacterized protein [Arabidopsis thaliana] gi|26453006|dbj|BAC43579.1| unknown protein [Arabidopsis thaliana] gi|28973017|gb|AAO63833.1| unknown protein [Arabidopsis thaliana] gi|332004096|gb|AED91479.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 148/215 (68%), Gaps = 30/215 (13%)

Query: 1   MFSTLKFQSA------NPTIDHDF--NNYSFSRHHGCSLHRLPLYLRPPLRFRRLSAQSE 52
           +FS  K QS       NP + + F   N SF R       R+ L L  P+   RL+  S+
Sbjct: 2   LFSPSKLQSPQSLISWNPILHNGFIDKNLSFRR-------RVTLRLASPIS--RLTKGSD 52

Query: 53  YAASS----------EPSVSSHYTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVS 102
             ASS          EPS+SS  T+SVG      LQLSQW  T +H ++LNV+AC  A+S
Sbjct: 53  SIASSTPSALYSNPQEPSISSQLTSSVGQPP---LQLSQWTFTQKHFVLLNVVACVTAIS 109

Query: 103 ATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQE 162
           A+WLFF+AIPTLLA K AAESLEKL+DVTREELP+TMAAVRLSGMEISDLTMELSDLGQ 
Sbjct: 110 ASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQG 169

Query: 163 ITQGVRSSTKAVRIAEERLRQLTNMNPSGGSEPEN 197
           ITQGV+SST+A+R+AE+RLR+LTNMNP G +  ++
Sbjct: 170 ITQGVKSSTRAIRVAEDRLRRLTNMNPGGDASNQD 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573327|ref|NP_974760.1| uncharacterized protein [Arabidopsis thaliana] gi|332004095|gb|AED91478.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 146/212 (68%), Gaps = 30/212 (14%)

Query: 1   MFSTLKFQSA------NPTIDHDF--NNYSFSRHHGCSLHRLPLYLRPPLRFRRLSAQSE 52
           +FS  K QS       NP + + F   N SF R       R+ L L  P+   RL+  S+
Sbjct: 2   LFSPSKLQSPQSLISWNPILHNGFIDKNLSFRR-------RVTLRLASPIS--RLTKGSD 52

Query: 53  YAASS----------EPSVSSHYTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVS 102
             ASS          EPS+SS  T+SVG      LQLSQW  T +H ++LNV+AC  A+S
Sbjct: 53  SIASSTPSALYSNPQEPSISSQLTSSVGQPP---LQLSQWTFTQKHFVLLNVVACVTAIS 109

Query: 103 ATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQE 162
           A+WLFF+AIPTLLA K AAESLEKL+DVTREELP+TMAAVRLSGMEISDLTMELSDLGQ 
Sbjct: 110 ASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQG 169

Query: 163 ITQGVRSSTKAVRIAEERLRQLTNMNPSGGSE 194
           ITQGV+SST+A+R+AE+RLR+LTNMNP+   E
Sbjct: 170 ITQGVKSSTRAIRVAEDRLRRLTNMNPASMQE 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573325|ref|NP_974759.1| uncharacterized protein [Arabidopsis thaliana] gi|332004094|gb|AED91477.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/207 (57%), Positives = 144/207 (69%), Gaps = 30/207 (14%)

Query: 1   MFSTLKFQSA------NPTIDHDF--NNYSFSRHHGCSLHRLPLYLRPPLRFRRLSAQSE 52
           +FS  K QS       NP + + F   N SF R       R+ L L  P+   RL+  S+
Sbjct: 2   LFSPSKLQSPQSLISWNPILHNGFIDKNLSFRR-------RVTLRLASPIS--RLTKGSD 52

Query: 53  YAASS----------EPSVSSHYTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVS 102
             ASS          EPS+SS  T+SVG      LQLSQW  T +H ++LNV+AC  A+S
Sbjct: 53  SIASSTPSALYSNPQEPSISSQLTSSVGQPP---LQLSQWTFTQKHFVLLNVVACVTAIS 109

Query: 103 ATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQE 162
           A+WLFF+AIPTLLA K AAESLEKL+DVTREELP+TMAAVRLSGMEISDLTMELSDLGQ 
Sbjct: 110 ASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQG 169

Query: 163 ITQGVRSSTKAVRIAEERLRQLTNMNP 189
           ITQGV+SST+A+R+AE+RLR+LTNMNP
Sbjct: 170 ITQGVKSSTRAIRVAEDRLRRLTNMNP 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811099|ref|XP_002873433.1| hypothetical protein ARALYDRAFT_487824 [Arabidopsis lyrata subsp. lyrata] gi|297319270|gb|EFH49692.1| hypothetical protein ARALYDRAFT_487824 [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 133/183 (72%), Gaps = 8/183 (4%)

Query: 11  NPTIDHDF--NNYSFSRHHGCSLHRLPL--YLRPPLRFRRLSAQSEYAASSEPSVSSHYT 66
           NP + + F   N SF R     L   P+  Y +        S    Y+   EPS+SS +T
Sbjct: 18  NPILHYGFIDKNLSFRRRDTLRLA-FPISRYAKGSESIASSSPSPLYSNPQEPSISSQFT 76

Query: 67  TSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEK 126
           +SVG      LQLSQW  T +H ++LNV+AC  A+SA+WLFF+AIPTLLA K AAESLEK
Sbjct: 77  SSVGQPP---LQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEK 133

Query: 127 LMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTN 186
           L+DVTREELP+TMAAVRLSGMEISDLTMELSDLGQ ITQGV+SST+A+R+AE+RLR+LTN
Sbjct: 134 LLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRRLTN 193

Query: 187 MNP 189
           MNP
Sbjct: 194 MNP 196

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082495|emb|CBI21500.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 1   MFSTLKFQSANPTIDHDFNNYSFSRHHGCSLHRLPLYLRPPLRFRRLSAQSEYAASSEPS 60
           M STL+ Q +NP I  +  +        C   RL     P  RF  LS +S  AAS E  
Sbjct: 19  MSSTLRLQVSNPAIKPNDAHTLAGNLFSC--RRLSGTGPPARRFTCLSLKSNNAASPELQ 76

Query: 61  --VSSHYTTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALK 118
             VSS +T+SV  SS SSLQLSQWNLTHRHI VLNVIA A A+SATWLF SAIPTLLA K
Sbjct: 77  SFVSSQFTSSV-GSSPSSLQLSQWNLTHRHIEVLNVIALATAISATWLFCSAIPTLLAFK 135

Query: 119 GAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAE 178
            AAESLEKL+DVTREELP TMAAVRLSGMEISDLTMELSDLGQEITQGVRSST+AVR+AE
Sbjct: 136 RAAESLEKLLDVTREELPGTMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTRAVRMAE 195

Query: 179 ERLRQLTNMNPSG 191
           ERLR+LTNM PS 
Sbjct: 196 ERLRRLTNMTPSA 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217426818|gb|ACK44526.1| AT5G09995-like protein [Arabidopsis arenosa]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 133/188 (70%), Gaps = 8/188 (4%)

Query: 11  NPTIDHDF--NNYSFSRHHGCSLHRLPL--YLRPPLRFRRLSAQSEYAASSEPSVSSHYT 66
           NP + + F   N SF R     L   P+  + +        S    Y+   EPS+S   T
Sbjct: 18  NPILHYGFIDKNLSFRRRDTLRLA-FPISRFTKGSESIASSSPSPLYSNPQEPSISPQLT 76

Query: 67  TSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEK 126
           +SVG      LQLSQW  T +H ++LNV+AC  A+SA+WLFF+AIPTLLA K AAESLEK
Sbjct: 77  SSVGQPP---LQLSQWTFTQKHFILLNVVACITAISASWLFFAAIPTLLAFKKAAESLEK 133

Query: 127 LMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTN 186
           L+DVTREELP+TMAAVRLSGMEISDLTMELSDLGQ ITQGV+SST+A+R+AE+RLR+LTN
Sbjct: 134 LLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRRLTN 193

Query: 187 MNPSGGSE 194
           MNP+   E
Sbjct: 194 MNPASMQE 201

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:505006593	257	AT5G09995 "AT5G09995" [Arabido	0.935	0.727	0.507	1.5e-42
TAIR|locus:2025630	257	AT1G08530 "AT1G08530" [Arabido	0.51	0.396	0.539	1.6e-22

TAIR|locus:505006593 AT5G09995 "AT5G09995" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 100/197 (50%), Positives = 122/197 (61%)

Query:     1 MFSTLKFQSA------NPTIDHDF--NNYSFSRHHGCSLHXXXXXXXXXXXXXXXSAQSE 52
             +FS  K QS       NP + + F   N SF R    +L                ++ + 
Sbjct:     2 LFSPSKLQSPQSLISWNPILHNGFIDKNLSFRRR--VTLRLASPISRLTKGSDSIASSTP 59

Query:    53 YAASSEPXXXXXXXXXXXXXXXXXXXXXXWNLTHRHILVLNVIACAAAVSATWLFFSAIP 112
              A  S P                      W  T +H ++LNV+AC  A+SA+WLFF+AIP
Sbjct:    60 SALYSNPQEPSISSQLTSSVGQPPLQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIP 119

Query:   113 TLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTK 172
             TLLA K AAESLEKL+DVTREELP+TMAAVRLSGMEISDLTMELSDLGQ ITQGV+SST+
Sbjct:   120 TLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTR 179

Query:   173 AVRIAEERLRQLTNMNP 189
             A+R+AE+RLR+LTNMNP
Sbjct:   180 AIRVAEDRLRRLTNMNP 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025630 AT1G08530 "AT1G08530" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 55/102 (53%), Positives = 73/102 (71%)

Query:    83 NLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAV 142
             +L+ +  L+L  I C  +V+ T L  +AIPTL+A+  AA S  KL D  R+ELP T+AAV
Sbjct:    99 SLSDQAFLLLAFIVCTTSVAFTSLVITAIPTLVAMGRAATSFAKLADTARKELPSTLAAV 158

Query:   143 RLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184
             RLSGMEISDLT+ELSDL Q+IT G+  S KAV+ AE  ++Q+
Sbjct:   159 RLSGMEISDLTLELSDLSQDITDGINKSAKAVQAAEAGIKQI 200


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.126   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       163   0.00084  107 3  11 23  0.39    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.80u 0.08s 14.88t   Elapsed:  00:00:01
  Total cpu time:  14.80u 0.08s 14.88t   Elapsed:  00:00:01
  Start:  Fri May 10 03:04:25 2013   End:  Fri May 10 03:04:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VII.2140.1	hypothetical protein (204 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0037013703	hypothetical protein (146 aa)			•						0.506
	estExt_fgenesh4_pg.C_LG_I1397	SubName- Full=Putative uncharacterized protein; (146 aa)			•						0.506
	grail3.0063005001	hypothetical protein (186 aa)			•						0.505
	gw1.II.1221.1	hypothetical protein (155 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_XIV1543	SubName- Full=Putative uncharacterized protein; (151 aa)			•						0.504
	eugene3.00080706	hypothetical protein (213 aa)			•						0.503
	eugene3.00020518	SubName- Full=Putative uncharacterized protein; (262 aa)			•						0.503
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)			•						0.502
	gw1.II.1028.1	hypothetical protein (152 aa)			•						0.500
	gw1.I.3658.1	hypothetical protein (201 aa)			•						0.500

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	98.39
COG4768	139	Uncharacterized protein containing a divergent ver	96.16
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	95.94
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	87.73
PRK09793	533	methyl-accepting protein IV; Provisional	82.92
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	81.38
PRK15041	554	methyl-accepting chemotaxis protein I; Provisional	80.61
TIGR01386	457	cztS_silS_copS heavy metal sensor kinase. Members	80.41

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=98.39  E-value=8.6e-06  Score=59.50  Aligned_cols=86  Identities=17%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHH
Q 029023           95 IACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAV  174 (200)
Q Consensus        95 ~a~~vavs~t~ll~~aIPtllAlkRAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v  174 (200)
                      +++++|++|..++++.++++..+++..+++++..+.+.+++.+.+..+.-.-.+.+++++|+.+-.+++.    ...+.+
T Consensus         2 a~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~----~~~~~v   77 (90)
T PF06103_consen    2 AGLIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVD----PVFEAV   77 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHH
Confidence            5678899999999999999999999999999999999999999998887777777777777665444433    333344


Q ss_pred             HHHHHHHhhh
Q 029023          175 RIAEERLRQL  184 (200)
Q Consensus       175 ~~ae~~lrq~  184 (200)
                      +.....++.+
T Consensus        78 ~~~g~~v~~l   87 (90)
T PF06103_consen   78 ADLGESVSEL   87 (90)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]

Probab=96.16  E-value=0.15  Score=42.45  Aligned_cols=101  Identities=12%  Similarity=0.111  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhH---HHHHHhh
Q 029023           91 VLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLG---QEITQGV  167 (200)
Q Consensus        91 vL~v~a~~vavs~t~ll~~aIPtllAlkRAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~---qei~~GV  167 (200)
                      +|.+++.++|+++.+|++..|-++..+.++-..++|-++.+.-++-+++..--.-=---+-|.+|+..=.   +-+-+.|
T Consensus         3 ilyIs~~iiAiAf~vL~I~li~tlkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~vf~aV   82 (139)
T COG4768           3 ILYISLAIIAIAFLVLVIYLIITLKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDPVFDAV   82 (139)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHH
Confidence            5778899999999999999999999999999999999999988888775432111112222223322111   1123445


Q ss_pred             hhhHHHHHHHHHHHhhhcCCCCCC
Q 029023          168 RSSTKAVRIAEERLRQLTNMNPSG  191 (200)
Q Consensus       168 rss~~~v~~ae~~lrq~~~~~~~~  191 (200)
                      +.-++.|+..-+..|+.++.++.+
T Consensus        83 ~dl~~SV~~ln~s~r~~~~~~t~~  106 (139)
T COG4768          83 KDLGQSVSDLNQSVRHLATRATNA  106 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhH
Confidence            555555666666666655554443

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=95.94  E-value=0.3  Score=35.60  Aligned_cols=75  Identities=8%  Similarity=0.075  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhhhhhhHHhhhhHHHH
Q 029023           89 ILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEI  163 (200)
Q Consensus        89 l~vL~v~a~~vavs~t~ll~~aIPtllAlkRAA~SleKL~Dt~reELP~TLAAiRLSGlEIsDLT~eLs~l~qei  163 (200)
                      .++.++++.++++.+.-++.-.-+++.++.+..+.+++=.|.+.+|...+++..+-.--++.+-+++++.+.+.+
T Consensus         3 ~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v   77 (90)
T PF06103_consen    3 GLIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV   77 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            456777777778888888888899999999999999999999999999999999888888888777777555443

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=87.73  E-value=15  Score=34.12  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             HhhchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhh
Q 029023          132 REELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL  184 (200)
Q Consensus       132 reELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~  184 (200)
                      .+.|-..+..++-+..+|++-++++++-++++..++......++..-+.+.++
T Consensus       258 ~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eei  310 (553)
T PRK15048        258 QRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQL  310 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455666666666666666666666666666655555555544444443

>PRK09793 methyl-accepting protein IV; Provisional

Probab=82.92  E-value=41  Score=31.43  Aligned_cols=51  Identities=16%  Similarity=0.192  Sum_probs=27.1

Q ss_pred             hchhhHHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHHhhh
Q 029023          134 ELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL  184 (200)
Q Consensus       134 ELP~TLAAiRLSGlEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~lrq~  184 (200)
                      .|-.++..++-+..+++..+.+++...+++.+++...+..+...-+.+.++
T Consensus       258 ~L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~  308 (533)
T PRK09793        258 ALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQL  308 (533)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556655666666666665555555555555544444444444433

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=81.38  E-value=18  Score=29.58  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhhchhhHHHHHhhhhhhhhh-hHHhhhhHHHHHHhhh
Q 029023          123 SLEKLMDVTREELPETMAAVRLSGMEISDL-TMELSDLGQEITQGVR  168 (200)
Q Consensus       123 SleKL~Dt~reELP~TLAAiRLSGlEIsDL-T~eLs~l~qei~~GVr  168 (200)
                      ++++|-.|+ +.+-|+...|.-+|-|+.+- -.|+.+|.+.+.+|.+
T Consensus        35 ~l~~L~sTl-~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~   80 (147)
T PF05659_consen   35 ILKRLESTL-ESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE   80 (147)
T ss_pred             HHHHHHHHH-HHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence            344444444 56778999999999999999 8888888888888864

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PRK15041 methyl-accepting chemotaxis protein I; Provisional

Probab=80.61  E-value=48  Score=31.29  Aligned_cols=32  Identities=13%  Similarity=0.150  Sum_probs=13.2

Q ss_pred             HHHHHhhhhhhhhhhHHhhhhHHHHHHhhhhh
Q 029023          139 MAAVRLSGMEISDLTMELSDLGQEITQGVRSS  170 (200)
Q Consensus       139 LAAiRLSGlEIsDLT~eLs~l~qei~~GVrss  170 (200)
                      +..++-...+|.+-+.+++...+++.++....
T Consensus       267 i~~i~~~s~~v~~~s~els~~~~~ls~~~~~q  298 (554)
T PRK15041        267 VGDVRNGANAIYSGASEIATGNNDLSSRTEQQ  298 (554)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444443333

>TIGR01386 cztS_silS_copS heavy metal sensor kinase

Probab=80.41  E-value=20  Score=30.76  Aligned_cols=35  Identities=9%  Similarity=0.142  Sum_probs=20.7

Q ss_pred             hhhhhhhHHhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 029023          147 MEISDLTMELSDLGQEITQGVRSSTKAVRIAEERL  181 (200)
Q Consensus       147 lEIsDLT~eLs~l~qei~~GVrss~~~v~~ae~~l  181 (200)
                      -||.++...++.+.+++.+-++...+..+.+-..|
T Consensus       218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l  252 (457)
T TIGR01386       218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHEL  252 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            47777777777766666666655554444443333

Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00