Citrus Sinensis ID: 029029

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS
Secondary Structure (PSIPRED)
cccccccEEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEEcccEEEEEEEEcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcccHcccccccccEEccccccccccccccc
Coil and Loop (DISEMBL)
mattgnkniNAKLVLLGDVGAGKSSLVLRFVKGQfiefqestigaaffsqtlavndaTVKFeiwdtagqeryhslapmyyrGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKrlprvqpapnpsgmvlmdrpgertasasccs
Flexible Loop (DISEMBL)
mattgnkninakLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKrlprvqpapnpsgmvlmdrpgertasasccs
Low Complexity Region (SEG)
MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS
Disordered region (IsUnstruct)
********INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL*****************************
Disordered Region (DISOPRED)
*****NK**NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA****************************SCC*
Disordered Region (DISEMBL)
MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRP***********
Disordered Region (DISPRO)
****GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
P31582	200	Ras-related protein RABF2	yes	no	1.0	1.0	0.895	1e-103
Q9SN68	200	Ras-related protein RABF2	no	no	1.0	1.0	0.88	1e-102
P31583	200	Ras-related protein RHN1	N/A	no	1.0	1.0	0.83	8e-96
P29687	200	Ras-related protein Rab5	N/A	no	1.0	1.0	0.82	2e-95
Q0IIG7	215	Ras-related protein Rab-5	yes	no	0.975	0.906	0.650	1e-69
P61271	215	Ras-related protein Rab-5	N/A	no	0.975	0.906	0.650	1e-69
P18066	215	Ras-related protein Rab-5	yes	no	0.975	0.906	0.650	1e-69
Q9CQD1	215	Ras-related protein Rab-5	yes	no	0.98	0.911	0.648	2e-69
Q06AU6	215	Ras-related protein Rab-5	yes	no	0.97	0.902	0.651	2e-69
P20339	215	Ras-related protein Rab-5	yes	no	0.975	0.906	0.645	4e-69

>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/200 (89%), Positives = 189/200 (94%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA++GNKNINAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIV+DITNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADLLDARKV+AEEA+ YAQEN LFFMETSAKTATNV DIFYEIAKRLPRVQPA NP
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL + PG    S+SCC+
Sbjct: 181 TGMVLPNGPGATAVSSSCCA 200

Involved in the trafficking of soluble cargo proteins from the prevacuolar compartment to the central vacuole.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/200 (88%), Positives = 188/200 (94%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNK+DLLDARKVTAE+AQ YAQENGLFFMETSAKTATNV +IFYEIA+RLPRVQP  NP
Sbjct: 121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL DR  +R  S+SCC+
Sbjct: 181 TGMVLPDRAMDRAVSSSCCA 200

Endosomal protein that may be involved in endocytosis.

Arabidopsis thaliana (taxid: 3702)

>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1

 Score =  349 bits (895), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 166/200 (83%), Positives = 181/200 (90%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA++ + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS TLAVN+ATVK
Sbjct: 1   MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+  SF RAKKWVQELQ QGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTA NVN IFYEIAKRLPR QPA NP
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL+DR  E T + SCC+
Sbjct: 181 AGMVLVDRAAEGTRATSCCT 200

Protein transport. Probably involved in vesicular traffic.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1

 Score =  348 bits (892), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 182/200 (91%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA+  + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS T++VN+ATVK
Sbjct: 1   MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+  S  RAKKWVQELQ QGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTATNVNDIFYEIAKRLPR QPA NP
Sbjct: 121 AGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL D+P + + +ASCC+
Sbjct: 181 AGMVLEDKPAQGSQAASCCT 200

Protein transport. Probably involved in vesicular traffic.

Nicotiana tabacum (taxid: 4097)

>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1

 Score =  262 bits (669), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 155/203 (76%), Gaps = 8/203 (3%)

Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14  TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
           WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
           KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query: 184 ------VLMDRPGERTASASCCS 200
                 V +  P + T S  CCS
Sbjct: 193 STRGRGVDLTEPTQPTRS-QCCS 214

Required for the fusion of plasma membranes and early endosomes. Contributes to the regulation of filopodia extension.

Bos taurus (taxid: 9913)

>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1

 Score =  262 bits (669), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 155/203 (76%), Gaps = 8/203 (3%)

Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14  TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
           WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
           KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query: 184 ------VLMDRPGERTASASCCS 200
                 V +  P + T S  CCS
Sbjct: 193 SARGRGVDLTEPTQPTRS-QCCS 214

Required for the fusion of plasma membranes and early endosomes. Contributes to the regulation of filopodia extension.

Macaca fascicularis (taxid: 9541)

>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1

 Score =  262 bits (669), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 155/203 (76%), Gaps = 8/203 (3%)

Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14  TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
           WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
           KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query: 184 ------VLMDRPGERTASASCCS 200
                 V +  P + T S  CCS
Sbjct: 193 SARGRGVDLTEPTQPTRS-QCCS 214

Required for the fusion of plasma membranes and early endosomes. Contributes to the regulation of filopodia extension.

Canis familiaris (taxid: 9615)

>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1

 Score =  261 bits (668), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/202 (64%), Positives = 154/202 (76%), Gaps = 6/202 (2%)

Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14  TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
           WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
           KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query: 184 VLMDRPGERT-----ASASCCS 200
               R  + T     A + CCS
Sbjct: 193 SARGRGVDLTEPAQPARSQCCS 214

Required for the fusion of plasma membranes and early endosomes. Contributes to the regulation of filopodia extension.

Mus musculus (taxid: 10090)

>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/204 (65%), Positives = 157/204 (76%), Gaps = 10/204 (4%)

Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14  TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
           WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
           KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP G+
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NP-GI 191

Query: 184 -------VLMDRPGERTASASCCS 200
                  V +  P + T S  CCS
Sbjct: 192 NCTRGRGVDLTEPTQPTRS-QCCS 214

Required for the fusion of plasma membranes and early endosomes. Contributes to the regulation of filopodia extension.

Sus scrofa (taxid: 9823)

>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2

 Score =  260 bits (665), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/203 (64%), Positives = 155/203 (76%), Gaps = 8/203 (3%)

Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct: 14  TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
           WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct: 74  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
           KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query: 184 ------VLMDRPGERTASASCCS 200
                 V +  P + T +  CCS
Sbjct: 193 SARGRGVDLTEPTQPTRN-QCCS 214

Required for the fusion of plasma membranes and early endosomes. Contributes to the regulation of filopodia extension.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
224115414	200	predicted protein [Populus trichocarpa]	1.0	1.0	0.965	1e-110
118482090	200	unknown [Populus trichocarpa]	1.0	1.0	0.945	1e-108
224134314	200	predicted protein [Populus trichocarpa]	1.0	1.0	0.935	1e-107
296878	200	ras-related GTP-binding protein [Nicotia	1.0	1.0	0.915	1e-105
449455421	199	PREDICTED: ras-related protein RABF2b-li	0.995	1.0	0.905	1e-103
297800092	200	hypothetical protein ARALYDRAFT_492904 [	1.0	1.0	0.89	1e-102
15242309	200	Ras-related protein RHA1 [Arabidopsis th	1.0	1.0	0.895	1e-102
15235113	200	Ras-related small GTP-binding family pro	1.0	1.0	0.88	1e-101
356569718	200	PREDICTED: ras-related protein RHN1-like	1.0	1.0	0.875	1e-99
357460687	200	GTP binding protein [Medicago truncatula	1.0	1.0	0.855	3e-98

>gi|224115414|ref|XP_002332129.1| predicted protein [Populus trichocarpa] gi|222875179|gb|EEF12310.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/200 (96%), Positives = 196/200 (98%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI+NQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDISNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADLLDARKVTAEEAQ YAQE GLFF+ETSAKTATNVNDIFYEIAKRLPRVQPAPNP
Sbjct: 121 AGNKADLLDARKVTAEEAQVYAQEYGLFFIETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           SGMVLMDRP E TASASCCS
Sbjct: 181 SGMVLMDRPTESTASASCCS 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482090|gb|ABK92976.1| unknown [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/200 (94%), Positives = 195/200 (97%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MATT NKNINAKLVLLGDVGAGKSSLVLRFVKGQF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MATTANKNINAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI+NQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDISNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADLLDARKV AEEAQ +AQENGLFFMETSAKTATNVNDIFYEIAKRL +VQPAPNP
Sbjct: 121 AGNKADLLDARKVAAEEAQVFAQENGLFFMETSAKTATNVNDIFYEIAKRLSQVQPAPNP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           SGMV+MDRP ERTASA+CCS
Sbjct: 181 SGMVIMDRPTERTASAACCS 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134314|ref|XP_002321789.1| predicted protein [Populus trichocarpa] gi|222868785|gb|EEF05916.1| predicted protein [Populus trichocarpa]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/200 (93%), Positives = 193/200 (96%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MATT NKNINAKLVLLGDVGAGKSSLVLRFVKGQF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MATTANKNINAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI+NQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDISNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADLLDARKV AE  Q +AQENGLFFMETSAKTATNVNDIFYEIAKRL +VQPAPNP
Sbjct: 121 AGNKADLLDARKVAAEATQVFAQENGLFFMETSAKTATNVNDIFYEIAKRLSQVQPAPNP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           SGMV+MDRP ERTASA+CCS
Sbjct: 181 SGMVIMDRPTERTASAACCS 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296878|emb|CAA50609.1| ras-related GTP-binding protein [Nicotiana tabacum]

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/200 (91%), Positives = 192/200 (96%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MAT+GNKN+NAKLVLLGDVGAGKSSL+LRFVKGQFIEFQESTIGAAFFSQT+AVNDATVK
Sbjct: 1   MATSGNKNMNAKLVLLGDVGAGKSSLLLRFVKGQFIEFQESTIGAAFFSQTVAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSL PMYYRGAAAAIIV+DITNQASF+RAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLPPMYYRGAAAAIIVFDITNQASFDRAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADLLDARKV AEEAQ YAQENGLFFMETSAKTA+NVNDIFYEIA RLPR+QPA NP
Sbjct: 121 AGNKADLLDARKVAAEEAQTYAQENGLFFMETSAKTASNVNDIFYEIANRLPRLQPAQNP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           SGMVLMDRP +  ASASCCS
Sbjct: 181 SGMVLMDRPAQTPASASCCS 200

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455421|ref|XP_004145451.1| PREDICTED: ras-related protein RABF2b-like [Cucumis sativus]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/200 (90%), Positives = 189/200 (94%), Gaps = 1/200 (0%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MAT+GNKNINAKLVLLGDVGAGKSSLVLRFVKGQF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MATSGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ SF+RAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQGSFDRAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNK+DLLD+RKV AE+AQ YAQENGLFFMETSAK+A NVNDIFYEIAKRLPRVQP  N 
Sbjct: 121 AGNKSDLLDSRKVAAEDAQTYAQENGLFFMETSAKSAANVNDIFYEIAKRLPRVQPVQNT 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL DRP ER AS SCCS
Sbjct: 181 TGMVL-DRPAERVASTSCCS 199

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800092|ref|XP_002867930.1| hypothetical protein ARALYDRAFT_492904 [Arabidopsis lyrata subsp. lyrata] gi|297313766|gb|EFH44189.1| hypothetical protein ARALYDRAFT_492904 [Arabidopsis lyrata subsp. lyrata]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/200 (89%), Positives = 189/200 (94%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MAT GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MATAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNK+DLLDARKVTAEEAQ YAQENGLFFMETSAKTATNV +IFYEIA+RLPRVQP  NP
Sbjct: 121 AGNKSDLLDARKVTAEEAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL DR  +R  S+SCC+
Sbjct: 181 TGMVLPDRAMDRAVSSSCCA 200

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242309|ref|NP_199326.1| Ras-related protein RHA1 [Arabidopsis thaliana] gi|297794787|ref|XP_002865278.1| hypothetical protein ARALYDRAFT_494466 [Arabidopsis lyrata subsp. lyrata] gi|400976|sp|P31582.1|RAF2A_ARATH RecName: Full=Ras-related protein RABF2a; Short=AtRABF2a; AltName: Full=Ras-related protein Rab5A; Short=AtRab5A; AltName: Full=Ras-related protein Rha1 gi|14488100|gb|AAK63870.1|AF389298_1 AT5g45130/K17O22_15 [Arabidopsis thaliana] gi|16484|emb|CAA41863.1| RHA1 [Arabidopsis thaliana] gi|397594|emb|CAA80534.1| GTP-binding protein [Arabidopsis thaliana] gi|9758988|dbj|BAB09498.1| ras-related GTP-binding protein RHA1 [Arabidopsis thaliana] gi|20453279|gb|AAM19878.1| AT5g45130/K17O22_15 [Arabidopsis thaliana] gi|297311113|gb|EFH41537.1| hypothetical protein ARALYDRAFT_494466 [Arabidopsis lyrata subsp. lyrata] gi|332007825|gb|AED95208.1| Ras-related protein RHA1 [Arabidopsis thaliana]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/200 (89%), Positives = 189/200 (94%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA++GNKNINAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIV+DITNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADLLDARKV+AEEA+ YAQEN LFFMETSAKTATNV DIFYEIAKRLPRVQPA NP
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL + PG    S+SCC+
Sbjct: 181 TGMVLPNGPGATAVSSSCCA 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235113|ref|NP_193699.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana] gi|75337446|sp|Q9SN68.1|RAF2B_ARATH RecName: Full=Ras-related protein RABF2b; Short=AtRABF2b; AltName: Full=Ras-related protein Ara-7; AltName: Full=Ras-related protein Rab5B; Short=AtRab5B gi|13878093|gb|AAK44124.1|AF370309_1 putative small GTP-binding protein [Arabidopsis thaliana] gi|2853090|emb|CAA16940.1| small GTP-binding protein-like [Arabidopsis thaliana] gi|7268760|emb|CAB78966.1| small GTP-binding protein-like [Arabidopsis thaliana] gi|12964606|dbj|BAB32669.1| Ara7 [Arabidopsis thaliana] gi|15450605|gb|AAK96574.1| AT4g19640/F24J7_190 [Arabidopsis thaliana] gi|17104761|gb|AAL34269.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|332658807|gb|AEE84207.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/200 (88%), Positives = 188/200 (94%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNK+DLLDARKVTAE+AQ YAQENGLFFMETSAKTATNV +IFYEIA+RLPRVQP  NP
Sbjct: 121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL DR  +R  S+SCC+
Sbjct: 181 TGMVLPDRAMDRAVSSSCCA 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569718|ref|XP_003553043.1| PREDICTED: ras-related protein RHN1-like [Glycine max]

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 175/200 (87%), Positives = 186/200 (93%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MAT G+ N+NAKLVLLGD+GAGKSSLVLRFVKGQF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MATIGHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+  SF RAKKWVQELQ QGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFTRAKKWVQELQKQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTA+NVNDIFYEIAKRLPR QPA NP
Sbjct: 121 AGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTASNVNDIFYEIAKRLPRAQPAQNP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL+DRP E T +ASCCS
Sbjct: 181 AGMVLVDRPAEGTRAASCCS 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460687|ref|XP_003600625.1| GTP binding protein [Medicago truncatula] gi|355489673|gb|AES70876.1| GTP binding protein [Medicago truncatula]

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/200 (85%), Positives = 185/200 (92%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MAT G+ N+NAKLVLLGD+GAGKSSLVLRFVKGQF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 1   MATIGHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+  SF RAKKWVQELQ QGNPNMVMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFSRAKKWVQELQKQGNPNMVMAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           AGNK+DL D RKVTAEEA+ YA+ENGLFFMETSAK+A NVND+FYEIAKRLPR QPA NP
Sbjct: 121 AGNKSDLEDKRKVTAEEARVYAEENGLFFMETSAKSAANVNDVFYEIAKRLPRAQPAQNP 180

Query: 181 SGMVLMDRPGERTASASCCS 200
           +GMVL+DRP E + +ASCCS
Sbjct: 181 AGMVLVDRPAEGSRAASCCS 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2153202	200	RHA1 "RAB homolog 1" [Arabidop	1.0	1.0	0.895	1e-91
TAIR|locus:2123010	200	ARA7 [Arabidopsis thaliana (ta	1.0	1.0	0.88	5.7e-91
WB|WBGene00004268	208	rab-5 [Caenorhabditis elegans	0.96	0.923	0.671	5.2e-65
UNIPROTKB|P91857	208	rab-5 "Protein RAB-5" [Caenorh	0.96	0.923	0.671	5.2e-65
UNIPROTKB|O88565	215	Rab5a "Protein Rab5a" [Rattus	0.98	0.911	0.648	4.2e-63
MGI|MGI:105926	215	Rab5a "RAB5A, member RAS oncog	0.98	0.911	0.648	5.4e-63
UNIPROTKB|Q0IIG7	215	RAB5A "Ras-related protein Rab	0.975	0.906	0.650	6.9e-63
UNIPROTKB|P18066	215	RAB5A "Ras-related protein Rab	0.975	0.906	0.650	6.9e-63
UNIPROTKB|Q06AU6	215	RAB5A "Ras-related protein Rab	0.975	0.906	0.655	6.9e-63
UNIPROTKB|P61271	215	RAB5A "Ras-related protein Rab	0.975	0.906	0.650	6.9e-63

TAIR|locus:2153202 RHA1 "RAB homolog 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 179/200 (89%), Positives = 189/200 (94%)

Query:     1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
             MA++GNKNINAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct:     1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
             FEIWDTAGQERYHSLAPMYYRGAAAAIIV+DITNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query:   121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
             AGNKADLLDARKV+AEEA+ YAQEN LFFMETSAKTATNV DIFYEIAKRLPRVQPA NP
Sbjct:   121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180

Query:   181 SGMVLMDRPGERTASASCCS 200
             +GMVL + PG    S+SCC+
Sbjct:   181 TGMVLPNGPGATAVSSSCCA 200

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IMP

GO:0007034 "vacuolar transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2123010 ARA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 176/200 (88%), Positives = 188/200 (94%)

Query:     1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
             MA  GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct:     1 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
             FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query:   121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
             AGNK+DLLDARKVTAE+AQ YAQENGLFFMETSAKTATNV +IFYEIA+RLPRVQP  NP
Sbjct:   121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180

Query:   181 SGMVLMDRPGERTASASCCS 200
             +GMVL DR  +R  S+SCC+
Sbjct:   181 TGMVLPDRAMDRAVSSSCCA 200

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

WB|WBGene00004268 rab-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 131/195 (67%), Positives = 157/195 (80%)

Query:     6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
             N+    KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++DAT+KFEIWD
Sbjct:    15 NRTCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDATIKFEIWD 74

Query:    66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
             TAGQERYHSLAPMYYRGA AAI+VYDITNQ SF++AK WV+ELQ Q +PN+VMALAGNKA
Sbjct:    75 TAGQERYHSLAPMYYRGAQAAIVVYDITNQESFQKAKNWVKELQRQASPNIVMALAGNKA 134

Query:   126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN-PSGMV 184
             D+ + R V  EEA AYA++N L FMETSAKT+ NVNDIF  IAK+LP + PA   P+G V
Sbjct:   135 DVANKRTVEYEEANAYAEDNALLFMETSAKTSMNVNDIFMAIAKKLP-IGPAQGEPTGTV 193

Query:   185 LMDRPGERTASASCC 199
              M++P ++    SCC
Sbjct:   194 DMNQP-QQQQKGSCC 207

GO:0006184 "GTP catabolic process" evidence=IEA;IDA

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007028 "cytoplasm organization" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0008219 "cell death" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0006952 "defense response" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0008105 "asymmetric protein localization" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0090386 "phagosome maturation involved in apoptotic cell clearance" evidence=IMP

GO:0032794 "GTPase activating protein binding" evidence=IPI

UNIPROTKB|P91857 rab-5 "Protein RAB-5" [Caenorhabditis elegans (taxid:6239)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 131/195 (67%), Positives = 157/195 (80%)

Query:     6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
             N+    KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++DAT+KFEIWD
Sbjct:    15 NRTCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDATIKFEIWD 74

Query:    66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
             TAGQERYHSLAPMYYRGA AAI+VYDITNQ SF++AK WV+ELQ Q +PN+VMALAGNKA
Sbjct:    75 TAGQERYHSLAPMYYRGAQAAIVVYDITNQESFQKAKNWVKELQRQASPNIVMALAGNKA 134

Query:   126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN-PSGMV 184
             D+ + R V  EEA AYA++N L FMETSAKT+ NVNDIF  IAK+LP + PA   P+G V
Sbjct:   135 DVANKRTVEYEEANAYAEDNALLFMETSAKTSMNVNDIFMAIAKKLP-IGPAQGEPTGTV 193

Query:   185 LMDRPGERTASASCC 199
              M++P ++    SCC
Sbjct:   194 DMNQP-QQQQKGSCC 207

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O88565 Rab5a "Protein Rab5a" [Rattus norvegicus (taxid:10116)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 131/202 (64%), Positives = 154/202 (76%)

Query:     4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
             TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct:    14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query:    64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
             WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct:    74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFSRAKNWVKELQRQASPNIVIALSGN 133

Query:   124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
             KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct:   134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query:   184 VLMDRPGERT-----ASASCCS 200
                 R  + T     A + CCS
Sbjct:   193 SARGRGVDLTEPAQPARSQCCS 214

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:105926 Rab5a "RAB5A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 131/202 (64%), Positives = 154/202 (76%)

Query:     4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
             TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct:    14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query:    64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
             WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct:    74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query:   124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
             KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct:   134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query:   184 VLMDRPGERT-----ASASCCS 200
                 R  + T     A + CCS
Sbjct:   193 SARGRGVDLTEPAQPARSQCCS 214

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001726 "ruffle" evidence=IDA

GO:0003924 "GTPase activity" evidence=ISO;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005769 "early endosome" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO;IDA;TAS

GO:0006810 "transport" evidence=IEA

GO:0006897 "endocytosis" evidence=ISO;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019001 "guanyl nucleotide binding" evidence=IDA

GO:0019003 "GDP binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0045121 "membrane raft" evidence=IDA

GO:0045921 "positive regulation of exocytosis" evidence=ISO

GO:0051489 "regulation of filopodium assembly" evidence=ISO

GO:2000286 "receptor internalization involved in canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|Q0IIG7 RAB5A "Ras-related protein Rab-5A" [Bos taurus (taxid:9913)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 132/203 (65%), Positives = 155/203 (76%)

Query:     4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
             TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct:    14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query:    64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
             WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct:    74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query:   124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
             KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct:   134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query:   184 ------VLMDRPGERTASASCCS 200
                   V +  P + T S  CCS
Sbjct:   193 STRGRGVDLTEPTQPTRS-QCCS 214

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P18066 RAB5A "Ras-related protein Rab-5A" [Canis lupus familiaris (taxid:9615)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 132/203 (65%), Positives = 155/203 (76%)

Query:     4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
             TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct:    14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query:    64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
             WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct:    74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query:   124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
             KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct:   134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query:   184 ------VLMDRPGERTASASCCS 200
                   V +  P + T S  CCS
Sbjct:   193 SARGRGVDLTEPTQPTRS-QCCS 214

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:2000286 "receptor internalization involved in canonical Wnt receptor signaling pathway" evidence=IEA

GO:0051489 "regulation of filopodium assembly" evidence=IEA

GO:0045921 "positive regulation of exocytosis" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q06AU6 RAB5A "Ras-related protein Rab-5A" [Sus scrofa (taxid:9823)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 133/203 (65%), Positives = 156/203 (76%)

Query:     4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
             TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct:    14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query:    64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
             WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct:    74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query:   124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS-- 181
             KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct:   134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGIN 192

Query:   182 ---GM-VLMDRPGERTASASCCS 200
                G  V +  P + T S  CCS
Sbjct:   193 CTRGRGVDLTEPTQPTRS-QCCS 214

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61271 RAB5A "Ras-related protein Rab-5A" [Macaca fascicularis (taxid:9541)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 132/203 (65%), Positives = 155/203 (76%)

Query:     4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
             TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEI
Sbjct:    14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 73

Query:    64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
             WDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GN
Sbjct:    74 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 133

Query:   124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGM 183
             KADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+ +P  NP   
Sbjct:   134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQ-NPGAN 192

Query:   184 ------VLMDRPGERTASASCCS 200
                   V +  P + T S  CCS
Sbjct:   193 SARGRGVDLTEPTQPTRS-QCCS 214

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61271	RAB5A_MACFA	No assigned EC number	0.6502	0.975	0.9069	N/A	no
P36586	YPT5_SCHPO	No assigned EC number	0.6445	0.82	0.7772	yes	no
Q06AU6	RAB5A_PIG	No assigned EC number	0.6519	0.97	0.9023	yes	no
Q9SN68	RAF2B_ARATH	No assigned EC number	0.88	1.0	1.0	no	no
Q0IIG7	RAB5A_BOVIN	No assigned EC number	0.6502	0.975	0.9069	yes	no
Q9CQD1	RAB5A_MOUSE	No assigned EC number	0.6485	0.98	0.9116	yes	no
P20339	RAB5A_HUMAN	No assigned EC number	0.6453	0.975	0.9069	yes	no
Q86JP3	RAB5A_DICDI	No assigned EC number	0.6313	0.97	0.9651	yes	no
P18066	RAB5A_CANFA	No assigned EC number	0.6502	0.975	0.9069	yes	no
P36017	VPS21_YEAST	No assigned EC number	0.5670	0.805	0.7666	yes	no
P31583	RHN1_NICPL	No assigned EC number	0.83	1.0	1.0	N/A	no
P31582	RAF2A_ARATH	No assigned EC number	0.895	1.0	1.0	yes	no
P29687	RAB5_TOBAC	No assigned EC number	0.82	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_2000003 hypothetical protein (200 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-114
pfam00071	162	pfam00071, Ras, Ras family	2e-88
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	8e-86
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	7e-82
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-70
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-68
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-66
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	6e-61
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-58
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	5e-58
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-56
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-56
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	4e-55
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-54
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-52
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-52
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-51
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	4e-50
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-49
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-49
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-47
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-45
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-43
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-43
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-43
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-42
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-42
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-42
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-41
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-39
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	7e-39
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-38
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-37
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-35
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	9e-35
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-34
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	6e-34
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	7e-34
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	8e-34
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-33
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-33
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-33
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-33
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	6e-33
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-32
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	8e-32
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-31
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	4e-31
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	7e-31
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-30
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-30
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	6e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-29
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	8e-29
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	8e-29
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-28
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-28
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-28
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-28
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	7e-28
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-26
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-26
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-25
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-23
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-23
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-23
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-23
pfam08477	116	pfam08477, Miro, Miro-like protein	7e-23
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-22
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-21
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	6e-21
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	8e-21
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-19
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-19
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	5e-17
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	4e-16
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	5e-16
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-15
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	4e-15
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-14
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	7e-14
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	8e-14
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	5e-12
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-11
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-11
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	4e-09
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	4e-09
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	5e-09
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	5e-09
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	6e-09
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	5e-08
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	5e-08
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	1e-07
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	9e-07
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	7e-05
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-04
cd00880	161	cd00880, Era_like, E	2e-04
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-04
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-04
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	4e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	6e-04
cd01898	170	cd01898, Obg, Obg GTPase	0.002
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.002
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.003
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	0.004

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  321 bits (826), Expect = e-114
 Identities = 117/163 (71%), Positives = 136/163 (83%)

Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
             KLVLLGD   GKSS+VLRFVK +F E QESTIGAAF +QT+ ++D TVKFEIWDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129
           ERY SLAPMYYRGAAAAI+VYDIT++ SFE+AK WV+ELQ  G PN+V+ALAGNKADL  
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
            R+V+ EEAQ YA ENGL FMETSAKT  NVN++F EIA++LP
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  256 bits (657), Expect = 2e-88
 Identities = 83/162 (51%), Positives = 115/162 (70%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVL+GD G GKSSL++RF + +F E    TIG  F+++T+ V+  TVK +IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + +L P+YYRGA   ++VYDIT++ SFE  KKW++E+    + N+ + L GNK DL D R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
            V+ EE +A A+E GL FMETSAKT  NV + F E+A+ + +
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  249 bits (639), Expect = 8e-86
 Identities = 86/158 (54%), Positives = 114/158 (72%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GK+SL+LRFV  +F E  +STIG  F S+T+ V+   VK +IWDTAGQER
Sbjct: 2   KIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGA  AI+VYD+TN+ SFE   KW+ EL+    PN+ + L GNK+DL D R
Sbjct: 62  FRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDER 121

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           +V+ EEAQ +A+ENGL F ETSAKT  NV++ F  +A+
Sbjct: 122 QVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  240 bits (614), Expect = 7e-82
 Identities = 84/160 (52%), Positives = 119/160 (74%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKSSL+ RF  G+F E  +STIG  F ++T+ V+   VK +IWDTAGQER
Sbjct: 2   KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGA  A++VYDITN+ SFE  + W++EL+   +PN+V+ L GNK+DL + R
Sbjct: 62  FRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQR 121

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V+ EEA+A+A+E+GL F ETSAKT TNV + F E+A+ +
Sbjct: 122 QVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  211 bits (539), Expect = 1e-70
 Identities = 76/160 (47%), Positives = 107/160 (66%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VLLG+   GK+SLVLR+V+ +F E  EST  A+FF +T+ +    +   IWDTAGQER
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           YH+L P+YYR A  AI+VYDIT+  SF++ KKW++EL+     N+ + + GNK DL   R
Sbjct: 62  YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V+  EA+ YA+  G    ETSAKT   + ++F  +AKR+
Sbjct: 122 VVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  204 bits (522), Expect = 6e-68
 Identities = 74/160 (46%), Positives = 113/160 (70%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++T+ ++  T+K +IWDTAGQER
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDIT +++FE  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V  EEA+A+A++NGL F+ETSA   TNV + F ++   +
Sbjct: 125 AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  201 bits (514), Expect = 1e-66
 Identities = 72/161 (44%), Positives = 108/161 (67%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
            KLV LGD   GK+S++ RF+   F    ++TIG  F S+T+ V+D TV+ ++WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           R+ SL P Y R ++ A++VYDITN+ SF+   KW+ +++ +   ++++ L GNK DL D 
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ EE +  A+EN   F+ETSAK   NV  +F +IA+ L
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  187 bits (476), Expect = 6e-61
 Identities = 76/160 (47%), Positives = 104/160 (65%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  TVK +IWDTAGQER
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   IIVYD+T+Q SF   K+W+QE+    + N+   L GNK DL D +
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKK 123

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V   EA+ +A E G+ F+ETSAK ATNV + F  +A+ +
Sbjct: 124 VVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  179 bits (457), Expect = 5e-58
 Identities = 70/160 (43%), Positives = 102/160 (63%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF +  F     STIG  F  +T+ ++   +K +IWDTAGQER
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYDIT++ SFE  K W++ +    + ++   L GNK D+ + R
Sbjct: 65  FRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEKR 124

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V+ EE +A A+E G+ F+ETSAK   NV + F  +AK +
Sbjct: 125 VVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  179 bits (456), Expect = 5e-58
 Identities = 71/158 (44%), Positives = 104/158 (65%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT + +F     W+++ +   N NM + L GNK DL   R
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR 125

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           +V+ EE +A+A+E+GL FMETSAKTA+NV + F   AK
Sbjct: 126 EVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 163

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  175 bits (447), Expect = 1e-56
 Identities = 73/161 (45%), Positives = 101/161 (62%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKSSL+LRF    F E   STIG  F  +T+ V+   VK  IWDTAGQER
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDA 130
           + +L   YYRGA   I+VYD+T + +F+    W+ EL     NP+ V  L GNK D  + 
Sbjct: 62  FRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKID-KEN 120

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+VT EE Q +A+++ + F+ETSAKT   V   F E+ +++
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  174 bits (444), Expect = 3e-56
 Identities = 72/160 (45%), Positives = 105/160 (65%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++G  G GKS L+ +F++ +F +    TIG  F S+ + V   +VK +IWDTAGQER
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT++ SF     W+ + +   +P++V+ L GNK DL D R
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDDR 121

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +VT  EA  +AQENGL F+ETSA T  NV + F + A+ +
Sbjct: 122 EVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  172 bits (437), Expect = 4e-55
 Identities = 74/160 (46%), Positives = 106/160 (66%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD+G GKS L+ +F + +F+     TIG  F ++ + VN   +K +IWDTAGQER
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VT EEA+ +A ENGL F+E SAKT  NV D F E AK++
Sbjct: 124 DVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  171 bits (434), Expect = 1e-54
 Identities = 72/161 (44%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD   GK+ +V RF  G F E Q +TIG  F  +TL +    VK +IWDTAGQER
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYR A  AII YDIT ++SFE    W++E++  G  N+V+ L GNK DL + R
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124

Query: 132 KVTAEEAQAYAQENGLFF-METSAKTATNVNDIFYEIAKRL 171
           +V  EEA   A+  G+   +ETSAK ++NV + F  +A  L
Sbjct: 125 EVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  164 bits (418), Expect = 3e-52
 Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L +RFV G+F+E  + TI    + + + V+  T   +I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIED-SYRKQIVVDGETYTLDILDTAGQEE 59

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     I+VY IT++ SFE  K   ++ L+ +   ++ + L GNK DL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ EE +A A+E G  F+ETSAKT  N++++F  + + +
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  164 bits (418), Expect = 4e-52
 Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 5/163 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
           + SL   +YRGA   ++VYD+TN  SFE    W  E   Q +P    N    + GNK DL
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 121

Query: 128 LDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAK 169
            + R+V+ ++AQ + +  G + + ETSAK A NV+  F  IA+
Sbjct: 122 EEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  165 bits (418), Expect = 1e-51
 Identities = 86/207 (41%), Positives = 125/207 (60%), Gaps = 23/207 (11%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+++ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQER
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDIT + +F+  ++W++EL+   + N+V+ +AGNK+DL   R
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR 133

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVN--------DIFYEIAKRLPRVQPAPNPSGM 183
            V  E+ QA A++ GL F+ETSA  ATNV         +I++ I+K+    Q A   SG+
Sbjct: 134 SVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGL 193

Query: 184 VLMDRPGERTA----------SASCCS 200
                PG+ T              CCS
Sbjct: 194 -----PGQGTTINVADTSGNNKRGCCS 215

Length = 216

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  160 bits (407), Expect = 4e-50
 Identities = 68/160 (42%), Positives = 103/160 (64%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWDTAGQE 
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT + +F     W+++ +   N NM + L GNK DL   R
Sbjct: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V+ EE + +A+E+GL FME SAKTA NV + F + A ++
Sbjct: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  159 bits (404), Expect = 2e-49
 Identities = 64/162 (39%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQE 70
           +L+++GD   GKSSL+ RF +G+F E  + T+G  FFS+ + +     +K ++WDTAGQE
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLD 129
           R+ S+   YYR +   ++V+DITN+ SFE    W++E ++   P+  V  L G+K DL  
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            R+VT EEA+  A++ G+ ++ETSA+T  NV + F  + + +
Sbjct: 124 QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEI 165

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  157 bits (398), Expect = 3e-49
 Identities = 65/160 (40%), Positives = 102/160 (63%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+G+ G GK+ LV RF +G F   Q +TIG  F  +T+ +    +K +IWDTAGQER
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYR A A I+ YDIT + SF    +W++E++   N  ++  L GNK DL + R
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR 128

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V+ + A+ ++    ++++ETSAK + NV  +F ++A RL
Sbjct: 129 EVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  152 bits (386), Expect = 4e-47
 Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 6/164 (3%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
            K+V+LG    GK+SLV R+V  +F+    ++TIGAAF ++ + V +  V   IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129
           ERY +++ +YYRGA AAI+ YD+T+ +SFERAK WV+ELQ     +  + L G K+DL++
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ-NLEEHCKIYLCGTKSDLIE 119

Query: 130 A----RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
                R+V   + Q +A E      ETS+KT  NV+++F ++A+
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAE 163

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  148 bits (375), Expect = 2e-45
 Identities = 72/190 (37%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
           K++L+GD G GK+ L++RF  G F+      T+G  F ++ + V+   VK +IWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           R+ S+   YYR A A +++YD+TN++SF+  + W+ E+      ++V+ L GNKAD+   
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSGE 121

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR--VQPAPNPSGMVLMDR 188
           R V  E+ +  A+E G+ FMETSAKT  NV   F  +AK L    V+    P   +    
Sbjct: 122 RVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDEPKFKIQDYV 181

Query: 189 PGERTASASC 198
             ++ +S  C
Sbjct: 182 EKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  143 bits (362), Expect = 2e-43
 Identities = 69/171 (40%), Positives = 99/171 (57%), Gaps = 3/171 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+++GD G GKSSL+LRF    F     +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKADLLDA 130
           + ++   YYRG    I+VYD+TN  SF   K+W+QE++   N + V   L GNK D  + 
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ--NCDDVCKVLVGNKNDDPER 125

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 181
           + V  E+A  +A + G+   ETSAK   NV ++F  I + + R +      
Sbjct: 126 KVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAK 176

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  141 bits (359), Expect = 3e-43
 Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 2/160 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++FV+G F++  + TI    + + + ++      +I DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     ++VY IT++ SFE   K+ ++ L+ +   ++ + L GNK DL + 
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLENE 122

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170
           R V+ EE +  A++ G  F+ETSAK   NV++ FY++ + 
Sbjct: 123 RVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVRE 162

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  141 bits (359), Expect = 3e-43
 Identities = 56/157 (35%), Positives = 95/157 (60%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++F++G F++  + TI    + + + ++      +I DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     ++VY IT++ SFE  KK+ ++ L+ +   ++ + L GNK DL   
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
           R V+ EE +  A++ G  F+ETSAK   NV++ FY++
Sbjct: 121 RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  142 bits (359), Expect = 1e-42
 Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 18/187 (9%)

Query: 7   KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
                K+V+LGD G GK++L+ R V  +F E    TIG    ++T+      +K ++WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKA 125
           AGQE Y SL P YYRGA   +IVYD T + S +   ++W++EL+     ++ + L GNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 126 DLLD------------ARKVTAEEAQAYAQENGLF---FMETSAK--TATNVNDIFYEIA 168
           DL D             R+V        A    +     +ETSAK  T  NVN++F E+ 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 169 KRLPRVQ 175
           ++L    
Sbjct: 182 RKLLEEI 188

Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  141 bits (357), Expect = 2e-42
 Identities = 63/201 (31%), Positives = 108/201 (53%), Gaps = 14/201 (6%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQE 70
           K++++GD+G GK+S++ R+V G F +  ++TIG  F  + +  +  T V+ ++WD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKA 125
           R+  +  +YY+GA  AIIV+D+T  ++FE   KW  +L ++     G P   + LA NK 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLA-NKC 120

Query: 126 DLLDAR-KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS-- 181
           DL   R     E+   + +ENG + + ETSAK   N+ +    + K + +          
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEP 180

Query: 182 ---GMVLMDRPGERTASASCC 199
               ++ + +    + S SCC
Sbjct: 181 DEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  139 bits (351), Expect = 4e-42
 Identities = 64/165 (38%), Positives = 94/165 (56%), Gaps = 5/165 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++GD   GK+ L  RF  G+F E  E+TIG  F  +T+ ++   +K ++WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 72  Y-HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129
           +  S+   YYR   A + VYD+TN ASF     W++E +    PN V   L GNK DL +
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAK---TATNVNDIFYEIAKRL 171
             +V  + AQ +A  + +   ETSAK      +V  IF  +A +L
Sbjct: 124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  137 bits (347), Expect = 2e-41
 Identities = 67/135 (49%), Positives = 92/135 (68%)

Query: 40  ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE 99
           +STIG  F S+TL +++  V+ ++WDTAGQER+ SL P Y R +AAAI+VYDITN+ SFE
Sbjct: 10  QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 100 RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 159
              KW+Q++  +   ++++AL GNK DL D RKVT EE    AQE    F ETSAK   N
Sbjct: 70  NTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129

Query: 160 VNDIFYEIAKRLPRV 174
           +  +F +IA +LP +
Sbjct: 130 IKVLFKKIAAKLPNL 144

Length = 176

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  132 bits (333), Expect = 2e-39
 Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 3/155 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DATVKFEIWDTAGQ 69
           K++++G+   GKSS++ RFVKG F +  + TIG  F  + + +   D  V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129
           E + ++   YYRGA A I+V+  T++ SFE  + W ++++A+   ++ M L   K DLLD
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
              +T EEA+A A+   L    TS K   NV ++F
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  130 bits (329), Expect = 7e-39
 Identities = 61/153 (39%), Positives = 88/153 (57%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQER
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
            V+AE  +  A + G  F E SAK   NV  +F
Sbjct: 123 VVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  130 bits (327), Expect = 1e-38
 Identities = 61/157 (38%), Positives = 90/157 (57%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L+L+GD G GK+ L+ RF   +F     STIG  F  +T+ V+   V+ +IWDTAGQER
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYR A    +VYDI+++ S++   KWV ++       +   L GNKAD    R
Sbjct: 62  YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168
           +V  E+    A+E G+ F ETSA T  N+ + F  + 
Sbjct: 122 QVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  129 bits (325), Expect = 1e-37
 Identities = 75/206 (36%), Positives = 110/206 (53%), Gaps = 11/206 (5%)

Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           +   +++ K++L+GD G GKSSL++ F+    +E    TIG  F  + L V    +K  I
Sbjct: 8   SSGYDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTI 66

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQA-QGNPNMVMALA 121
           WDTAGQER+ +L   YYR A   I+VYD+T + +F   +  W +E++    N + V  L 
Sbjct: 67  WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLV 126

Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 181
           GNK D    R V+ EE  A A+E+G  F+E SAKT  NV   F E+A ++  V P+    
Sbjct: 127 GNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV-PSLLEE 185

Query: 182 GM------VLMDRPGERTASAS-CCS 200
           G       +L  +P  +      CCS
Sbjct: 186 GSTAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  121 bits (305), Expect = 3e-35
 Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 12/167 (7%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-------QAQGNPNMVMALAGNK 124
           + SL   +YRG+   ++ + + +  SF+    W +E        + +  P +++   GNK
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL---GNK 123

Query: 125 ADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
            D+ + R+V+ EEAQA+ ++NG + + ETSAK ATNV   F E  +R
Sbjct: 124 IDIPE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  120 bits (303), Expect = 9e-35
 Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 15/162 (9%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT----------VKF 61
           KL+ LGD G GK++ + R+   +F     +T+G  F  + +  N             V  
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVM 118
           ++WDTAGQER+ SL   ++R A   ++++D+T++ SF   + W+ +LQA     NP++V 
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV- 124

Query: 119 ALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
            L GNKADL D R+V+  +A+  A + G+ + ETSA T  NV
Sbjct: 125 -LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNV 165

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  121 bits (304), Expect = 1e-34
 Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 5/183 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G  G GK+SL+ RF    F E  +ST+G  F  +T+ +    ++ +IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           ++S+   YYR A   I+VYDIT + +F+   KW++ +    + +  + L GNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 132 KVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFY----EIAKRLPRVQPAPNPSGMVLM 186
           ++T ++ + +AQ+  G+ F E SAK   NV++IF     +I K++P        S  +L 
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILS 181

Query: 187 DRP 189
            +P
Sbjct: 182 LQP 184

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  118 bits (297), Expect = 6e-34
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++FV+G F++  + TI    + + + V+      EI DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI-EDSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +      +VY IT Q SF   +    Q L+ +   ++ M L GNK DL D 
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 131 RKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 171
           R V+ EE Q  A++ G   F+ETSAK+  NV++IFY++ +++
Sbjct: 122 RVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  117 bits (296), Expect = 7e-34
 Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 2/159 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++F++  F+   + TI  ++  Q   ++    + +I DTAGQE 
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQC-EIDGQWARLDILDTAGQEE 62

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     ++V+ +T++ SFE   K+  Q L+ +      M L GNKADL   
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           R+V+ EE Q  A++  + ++ETSAK   NV+  F+++ +
Sbjct: 123 RQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  118 bits (296), Expect = 8e-34
 Identities = 63/161 (39%), Positives = 99/161 (61%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
           + S+  +Y +     I+VY + NQ +F+  K    Q ++ +G   + + L GNK DL   
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V++ E +A A+E G  FMETSAK+ T VN++F EI +++
Sbjct: 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  117 bits (295), Expect = 2e-33
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 19/173 (10%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K+V++GD   GK+ L++ +   +F      T+   F  +S  + V+   V   +WDTAGQ
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV---FDNYSANVTVDGKQVNLGLWDTAGQ 58

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KW  E++    PN+ + L G K DL 
Sbjct: 59  EEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIK-HYCPNVPIILVGTKIDLR 117

Query: 129 DARK-----------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAK 169
           D              +T EE +  A+E G   +ME SA T   + ++F E  +
Sbjct: 118 DDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  116 bits (293), Expect = 2e-33
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLGD   GKS LV RF+   +   Q ST     +         T+  + WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YY  A A I+V+D+T + +++   KW +EL+ +  P +   +  NK D LD  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELR-EYRPEIPCIVVANKID-LDPS 119

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
               ++   +A+++ L     SA   TNV  +F +  K
Sbjct: 120 VT--QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  116 bits (293), Expect = 2e-33
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +     ++VY IT Q++F +      Q L+ +   ++ M L GNK DL D 
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  E+ Q  A++ G  F+ETSAK   NVN+IFY++ +++ R
Sbjct: 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  116 bits (292), Expect = 4e-33
 Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 5/158 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++ +G+ G GKS ++ R+ +G+F+     TIG  +  + ++V +  V+   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-----NMVMALAGNKAD 126
           Y  +   +Y+     ++VYD+T++ SFE    W++E++ +G P     N+V+ +  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
           L   R V+ +E + +A+  G  + ETSA T   VN++F
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  116 bits (292), Expect = 6e-33
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 5/179 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ +LG    GKSSL ++FV+G F+E    TI   F S+ +         EI DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLLDA 130
           Y  L   Y  G    I+VY +T++ SFE  K  + + L   G  ++ + L GNK+DL   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ---PAPNPSGMVLM 186
           R+V+AEE +  A+  G  F+E+SAK   NV + F  + + + +V+   P    S   +M
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQKSKCSVM 180

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  115 bits (290), Expect = 1e-32
 Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 4/163 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LGD G GK++L ++     F+E  + TI  ++  Q + V+      E+ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ---AQGNPNMVMALAGNKADLL 128
           Y +L   + R     I+VY IT++++FER +++ +++Q    +   ++ + + GNK D +
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
             R+V+ EE  A A+  G  F+E SAKT  NV   FY + + L
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  113 bits (284), Expect = 8e-32
 Identities = 61/172 (35%), Positives = 97/172 (56%), Gaps = 2/172 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++F++  FI+  + TI  ++  Q   +++ T   +I DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQ-CVIDEETCLLDILDTAGQEE 65

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + VY IT+++SFE    +  Q L+ +    + M L GNK DL   
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSG 182
           R+V+  E Q  A+  G+ F+ETSAK   NV++ FYE+ + + +      PS 
Sbjct: 126 RQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQ 177

Length = 189

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  112 bits (282), Expect = 1e-31
 Identities = 57/163 (34%), Positives = 100/163 (61%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+  I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     ++V+ IT+  SF   A+   Q L+ + + N+ + L GNK DL D 
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDK 120

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R+V+ EEA   A++ G+ ++ETSAKT  NV+ +F+++ + + +
Sbjct: 121 RQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  112 bits (282), Expect = 4e-31
 Identities = 72/225 (32%), Positives = 111/225 (49%), Gaps = 43/225 (19%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF-SQTLAVNDATVKFEIWDTAGQE 70
           K+VLLGD+  GK+SL+ R+++ +F +   ST+G AF+  Q    N +     IWDTAG+E
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNIS-----IWDTAGRE 55

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           ++H L  MY RGAAA I+ YD++N  S E  +     L    N + + A+ GNK DL + 
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 131 -------------------RKVTAEEAQAYAQENGLFFM--------------ETSAKTA 157
                              R+VT E+A+A+ +    + M              ETSAKT 
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 158 TNVNDIFYEIAKR-LPRV--QPAPNPSGMVLMDRPGERTASASCC 199
            NV+++F  +    LP +  Q A        ++ P  + + + CC
Sbjct: 176 YNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  110 bits (277), Expect = 7e-31
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 20/170 (11%)

Query: 13  LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQE 70
           LV++GD   GK+ L++ +       F E  +   F  +S  + V+   V+  +WDTAGQE
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTN---AFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD 129
            Y  L P+ Y      +I + + + ASFE  K KW  E++    PN+ + L G K DL +
Sbjct: 58  DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRN 116

Query: 130 ARK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE 166
            +             VT E+ QA A+  G   ++E SA T   V ++F E
Sbjct: 117 DKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  109 bits (273), Expect = 2e-30
 Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 3/159 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE 
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I ++ SFE    + ++  + + + ++ M L GNK DL  A
Sbjct: 62  YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL-AA 120

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           R V+  + Q  A+  G+ ++ETSAKT   V + FY + +
Sbjct: 121 RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  109 bits (274), Expect = 6e-30
 Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 4/164 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
           K+V+LGD  +GK+SL+ RF +  F +  + TIG  FFS+ + +     V  ++WD  GQ+
Sbjct: 2   KIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQ 61

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADL 127
               +   Y  GA A  +VYDITN  SFE  + W   V+++  +      M L GNK DL
Sbjct: 62  IGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTDL 121

Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
              R+VTAE+   +AQEN +  +  SAKT   V   F  IA  L
Sbjct: 122 EHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  108 bits (270), Expect = 6e-30
 Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 3/161 (1%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
           +K++++GD+  GK+ L+ RF K  F +  ++TIG  F  +   V       ++WDTAGQE
Sbjct: 1   SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLL- 128
           R+  +A  YYRGA A IIV+D+T+ AS E  ++W+++   + +P+ V+  L G K DL  
Sbjct: 61  RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 129 -DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168
                +  ++A   A+E    +   SA T  NV D F+ +A
Sbjct: 121 PAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  106 bits (266), Expect = 2e-29
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 3/160 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVL+GD G GK++ V R + G+F +   +T+G          N   ++F +WDTAGQE+
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           +  L   YY     AII++D+T++ +++    W ++L      N+ + L GNK D+ D R
Sbjct: 62  FGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-R 119

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           KV  ++   + ++  L + E SAK+  N    F  +A++L
Sbjct: 120 KVKPKQIT-FHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  105 bits (263), Expect = 8e-29
 Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 6/163 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ +LG  G GKS+L +RF+  +FI   E  + +  +S+ + ++   V  EI DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLES-LYSRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 72  YHSLAPM--YYRGAAAAIIVYDITNQASFERAKKWVQELQ--AQGNPNMVMALAGNKADL 127
                 +    R A   ++VY IT+++SF+   + +Q ++   + +  + + L GNKADL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 128 LDARKVTAEEAQAYAQENGLFFMETSA-KTATNVNDIFYEIAK 169
           L +R+V+ EE Q  A E G  F E SA +    V ++F+E+ +
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCR 162

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  104 bits (262), Expect = 8e-29
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQES---TIGAAFFSQTLAVNDA--TVKFEIWD 65
           A+  ++GD   GKS+LV  F       FQ++   T G     +T+ V D   +V+  I+D
Sbjct: 1   AQCAVVGDPAVGKSALVQMF-HSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFD 59

Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNK 124
           +AGQE +  +    +   A   +VYD+TN+ SF    +W+  ++   +  +    L GNK
Sbjct: 60  SAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNK 119

Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
            DL D R+V A +AQA AQ N L F ETSAK        F  +A+
Sbjct: 120 CDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  104 bits (261), Expect = 1e-28
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 14  VLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
           V++G  G GKSSL+   + G+  E      +T     +     ++   VK  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYV--KELDKGKVKLVLVDTPGLD 58

Query: 71  RYH-----SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
            +       LA +  RGA   ++V D T++ S E AK  +  L+      + + L GNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK--LLILRRLRKEGIPIILVGNKI 116

Query: 126 DLLDARKVTAEE-AQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           DLL+ R+V      +  A+  G+   E SAKT   V+++F ++ +
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  104 bits (261), Expect = 2e-28
 Identities = 54/162 (33%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V+LG  G GKS+L ++FV+  FIE  + TI  ++  + + ++      EI DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +     ++VY +T++AS     +  ++ L+ + + N+ M L GNKADL D 
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121

Query: 131 RKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 171
           R+V+ E+  + +Q+ G   F ETSA+  TNV+++F ++ +++
Sbjct: 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  104 bits (260), Expect = 2e-28
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V+LG  G GKS++ ++F+   F ++ + TI  A+ +Q   +++     +I DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQAE 62

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     II Y +T++ SF+ A ++ + + + +   ++ + L GNK DL   
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQQ 122

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAP 178
           R+VT EE +  A+E    F ETSA     ++D F+ + + + R +  P
Sbjct: 123 RQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMP 170

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  103 bits (258), Expect = 7e-28
 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 7/176 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +L+GD   GK  ++     G         +G  + + T+ ++   VK ++WDT+GQ R
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   Y RGA   I+VYDITN+ SF+   +W++E+     P +   L GN+  L   R
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKR 126

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL------PRVQPAPNPS 181
           +V  E+AQAYA+ NG+ F E S     N+ + F E+A+ +      P   P  N S
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRPPQSPPQNCS 182

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  104 bits (260), Expect = 7e-28
 Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 6/174 (3%)

Query: 1   MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA 57
           MA    + ++    KLV++GD G GK++ V R + G+F +  E TIG          N  
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 58  TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV 117
            ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ 
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIP 119

Query: 118 MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           + L GNK D+ + R+V A++   + ++  L + E SAK+  N    F  +A++L
Sbjct: 120 IVLCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  100 bits (252), Expect = 3e-27
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQ-FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
            K+V++GD   GKS+L+ R +  +  I   +      + +  +  +  T KF + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAK-KWVQELQAQGNPNMVMALAGNKADL 127
           E Y ++  +YYR   +++ V+DI       E    K  +E+       + + L GNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
            DA+  T   A  +A+ NG   +  SA+T  N++  F  +
Sbjct: 122 RDAKLKT-HVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 99.1 bits (247), Expect = 1e-26
 Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++V+ G  G GKSSLVLRFVKG F E    TI   +  Q ++ + +    +I DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSHQ 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKK-WVQELQAQGN--PNMVMALAGNKADLL 128
           + ++  +      A I+VY IT++ S E  K  +    + +GN    + + L GNK D  
Sbjct: 62  FPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDES 121

Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
            +R+V++ E  A A+     FMETSAKT  NV ++F E+
Sbjct: 122 PSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (250), Expect = 2e-26
 Identities = 52/160 (32%), Positives = 89/160 (55%), Gaps = 3/160 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GK++ V R + G+F +    T+G          N   + F +WDTAGQE+
Sbjct: 11  KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK 70

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           +  L   YY     AII++D+T++ +++    W +++  +   N+ + L GNK D+ D R
Sbjct: 71  FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDI-VRVCENIPIVLVGNKVDVKD-R 128

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V A +   + ++N L + + SAK+  N    F  +A+RL
Sbjct: 129 QVKARQITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRL 167

Length = 215

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 97.0 bits (242), Expect = 2e-25
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 21/174 (12%)

Query: 8   NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDA-TVKFEIW 64
           ++  K+V++GD G GK+ L++ + +G F E    T+   F  +  TL V +   ++  +W
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALW 57

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGN 123
           DTAGQE Y  L P+ Y      +I Y + N  S +    KW  E+     P   + L G 
Sbjct: 58  DTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGL 116

Query: 124 KADLLDARK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIF 164
           K DL   +             VT E+ ++ A+  G   ++E SAK   NV+++F
Sbjct: 117 KTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 91.7 bits (228), Expect = 2e-23
 Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 12/161 (7%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ LLGD   GK+SL++++V+G+F E    T+G  F  +T+++    + F IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLL-- 128
           + ++ P+  + A A + ++D+T +++    K+W +  QA+G N   +  L G K DL   
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYR--QARGFNKTAIPILVGTKYDLFAD 119

Query: 129 ---DARKVTAEEAQAYAQ--ENGLFFMETSAKTATNVNDIF 164
              + ++   ++A+ YA+  +  L F   S   + NV  IF
Sbjct: 120 LPPEEQEEITKQARKYAKAMKAPLIF--CSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 92.0 bits (228), Expect = 2e-23
 Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 3/156 (1%)

Query: 16  LGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 75
           +GD G GK++ V R + G+F +   +T+G          N   ++F +WDTAGQE++  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 76  APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA 135
              YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ D RKV A
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKD-RKVKA 118

Query: 136 EEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +    + ++N L + + SAK+  N    F  +A++L
Sbjct: 119 KSITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 91.0 bits (226), Expect = 4e-23
 Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 26/200 (13%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++GD   GK+SL+  F  G+F E    T+   + +    V+   V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD- 129
           Y  L P+ Y  A   +I + I    S E  + KW++E++ +  PN+ + L G K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVR-RYCPNVPVILVGLKKDLRQE 120

Query: 130 ---------ARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
                       V  ++A+  A+  G   +ME SA T   V+D+F E A R         
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF-EAATR--------- 170

Query: 180 PSGMVLMDRPGERTASASCC 199
               +L+ + G+    A+CC
Sbjct: 171 --AALLVRKSGKEEPGANCC 188

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 90.1 bits (224), Expect = 5e-23
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 2/160 (1%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQ 69
           AKL+L+G  G GK+SL  + +  +F   + ST G       +   +   ++  +WD  GQ
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQ 61

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD 129
           E YH+    +    +  ++V+D+       R   W+++++A G  + V+ L G   D   
Sbjct: 62  EIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVI-LVGTHIDESC 120

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
              +  +                S K    + ++   IAK
Sbjct: 121 DEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 88.2 bits (219), Expect = 7e-23
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V++GD G+GKSSL+ + V G+F        G      TL V+  T    IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERA---KKWVQELQAQGNPNMVMALAGNK 124
                 ++ + A A ++VYD+T++ S         W+  L+      + + L GNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 90.5 bits (225), Expect = 1e-22
 Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 3/175 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++VLLGD G GKSSL   F  G + +      G   + +T++V+       ++D   QE 
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDA 130
              L     +   A +IVY +T+++SFE+A +   +L +A+   ++ + L GNK+DL+ +
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVRS 121

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPRVQPAPNPSGM 183
           R+V+ +E +A A      F+ETSA    NV+++F  I +  RL R     N   M
Sbjct: 122 REVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKEKNTRRM 176

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 86.7 bits (215), Expect = 1e-21
 Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 17/173 (9%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL--- 127
           Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 128 ------LDARK---VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                 L   K   V  EE +A A++ G F ++E SAKT   V ++F E+A R
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF-EMATR 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 84.8 bits (210), Expect = 6e-21
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 20/169 (11%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K VL+GD   GK+SL++ +       +    +  AF  FS  + V+   V+ ++ DTAGQ
Sbjct: 2   KCVLVGDGAVGKTSLIVSYT---TNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ 58

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLL 128
           + +  L P+ Y      ++ + + N +SF+  ++KW+ E++ + NP   + L G +ADL 
Sbjct: 59  DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIR-KHNPKAPIILVGTQADLR 117

Query: 129 DA------------RKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIF 164
                         + V+   A+A A++ G   ++E SA T  N+ ++F
Sbjct: 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 84.9 bits (210), Expect = 8e-21
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 16/178 (8%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K+V+LGD   GK+SL+  F +G F +  E T+   F  +   + V+   V+  +WDTAGQ
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV---FENYIHDIFVDGLAVELSLWDTAGQ 58

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E +  L  + Y      ++ + + N  S E  + KW+ E++    P + + L   K DL 
Sbjct: 59  EEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLR 117

Query: 129 DARKVTA--------EEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA 177
           + R            EE  A A+  N   ++E SAK    VN+ F E A+     +P 
Sbjct: 118 EPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPP 175

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 22/176 (12%)

Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
             K+VL+GD   GK++L+  F K  F E    T+   F  ++ +  V+   ++  +WDT+
Sbjct: 1   RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPTV---FENYTASFEVDKQRIELSLWDTS 57

Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKAD 126
           G   Y ++ P+ Y  + A +I +DI+   + +   KKW  E++    PN  + L G K+D
Sbjct: 58  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSD 116

Query: 127 L---------LDARK---VTAEEAQAYAQENG-LFFMETSAKTATN-VNDIFYEIA 168
           L         L  ++   V+ E+ +  A++ G   ++E SAKT+ N V D+F E+A
Sbjct: 117 LRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF-EMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 18/167 (10%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V +GD   GK+ +++ +    F       +   F  FS  + V+  TV   +WDTAGQ
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ 59

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128
           E Y+ L P+ YRGA   ++ + + ++AS+E   KKW+ EL+    P + + L G K DL 
Sbjct: 60  EDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLR 118

Query: 129 DARK-----------VTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
           D ++            TA+  +   Q     ++E S+KT  NV  +F
Sbjct: 119 DDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 80.7 bits (199), Expect = 4e-19
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +LV +G  G GK++L+ RF+   F      T+     S+   V    V  +I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTV-EELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++  +  +   A  +VY + +  SFE  K+  +E L+ + +  + + + GNK D L  
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 131 RKVTAEEAQAYAQ---ENGLFFMETSAKTATNVNDIFYEIAKR--LP-RVQPA 177
           R+V A +A +  +    NG  F+E SAK   NV ++F E+ ++  LP  + PA
Sbjct: 120 RQVEAADALSTVELDWNNG--FVEASAKDNENVTEVFKELLQQANLPSWLSPA 170

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 74.1 bits (183), Expect = 5e-17
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 19/162 (11%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++++LG  GAGK++++ +   G+ +     TIG  F  +T+   +  VKF +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIG--FNVETVEYKN--VKFTVWDVGGQDK 55

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
              L   YY      I V D +++   E AK  + +L    + +G P +++A   NK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILA---NKQDL 112

Query: 128 LDARKVTAE-----EAQAYAQENGLFFMETSAKTATNVNDIF 164
             A    +E       ++            SA T   +++  
Sbjct: 113 PGALTE-SELIELLGLESIKGRRWHIQP-CSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 34/174 (19%)

Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIE-----FQESTIGAAFFSQTLAVNDATVKFEIW 64
           + ++VL+GD G GKSSL++  V  +F E       E TI A             V   I 
Sbjct: 2   DVRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-------ERVPTTIV 54

Query: 65  DT--AGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALA 121
           DT    Q+R +  A +  R A    +VY +   ++ ER   KW+  ++  G   + + L 
Sbjct: 55  DTSSRPQDRANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILV 111

Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFM----------ETSAKTATNVNDIFY 165
           GNK+DL D        +QA  +E  L  M          E SAKT  NV+++FY
Sbjct: 112 GNKSDLRD------GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++V+LG    GK+++V RF+ G+F E    TI   F  +  ++     + +I DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFE---------RAKKWVQELQAQGNPNMVMALAG 122
           + ++  +        I+V+ + N+ SFE            K   + + + N  + M + G
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 123 NKADLLDARKVTAEEAQAY--AQENGLFFMETSAKTATNVNDIFYEIA 168
           NKAD    R+V  +E +      EN  +F E SAK  +N++++F  + 
Sbjct: 121 NKADRDFPREVQRDEVEQLVGGDENCAYF-EVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 20/171 (11%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 59

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADL- 127
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 118

Query: 128 --------LDARK---VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE 166
                   L  +K   +T  +  A A+E G   ++E SA T   +  +F E
Sbjct: 119 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 169

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 69.7 bits (170), Expect = 4e-15
 Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 17/175 (9%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
           N+N+  K+V++GD   GK++L+  F K  F E    T+   + + +  ++   ++  +WD
Sbjct: 1   NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 59

Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNK 124
           T+G   Y ++ P+ Y  + A +I +DI+   + +   KKW  E+Q +  PN  M L G K
Sbjct: 60  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCK 118

Query: 125 ADLLD------------ARKVTAEEAQAYAQENGLF-FMETSAKTATN-VNDIFY 165
           +DL                 V+ ++    A++ G   ++E SA  + N V DIF+
Sbjct: 119 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 173

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V++GD   GK+ L++ +    F E    T+    ++ ++ V        ++DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD- 129
           Y  L P+ Y      +I + + N ASF+  K +WV EL+    PN+   L G + DL D 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRDD 119

Query: 130 -----------ARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYE 166
                       + +T E+ Q  A+E G   ++E SA T   +  +F E
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 168

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 66.6 bits (162), Expect = 7e-14
 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V++GD   GK+ L++ +    F +    T+   + +QT AV+  TV   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQEE 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADL--- 127
           Y  L  + Y      II + I + +S+E  + KW  E+     PN+ + L G K DL   
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDLRND 122

Query: 128 LDARK---------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRLPRVQPA 177
            D  K         +T ++  A A++   + ++E SA     V ++F E  + +    P 
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 178 PNPSGMVLM 186
            +    VL+
Sbjct: 183 KDTKSCVLL 191

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 67.0 bits (163), Expect = 8e-14
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 18/189 (9%)

Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           +  KLVL+GDV  GK++++    K  + E    T+   + +  L   +  V+  +WDT+G
Sbjct: 12  VRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG 70

Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL 127
              Y ++ P+ Y  + A ++ +DI+    F+ A KKW  E+     P+  + L G K DL
Sbjct: 71  SPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI-LDYCPSTRILLIGCKTDL 129

Query: 128 ---------LDARK---VTAEEAQAYAQENGL-FFMETSAKTA-TNVNDIFYEIAKR-LP 172
                    L  +K   ++ E+  A A++ G   ++E SA T+  +++ IF   +   + 
Sbjct: 130 RTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCIN 189

Query: 173 RVQPAPNPS 181
           ++ P    S
Sbjct: 190 KLSPLAKKS 198

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 62.0 bits (150), Expect = 5e-12
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 21/171 (12%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K+V++GD   GK++L+  F K  +    ES +   F  ++ +  ++   ++  +WDT+G 
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNY---PESYVPTVFENYTASFEIDKHRIELNMWDTSGS 59

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL- 127
             Y ++ P+ Y  + A +I +DI+   + +   KKW  E Q +  PN  + L G K D+ 
Sbjct: 60  SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ-EFCPNAKLVLVGCKLDMR 118

Query: 128 --------LDARK---VTAEEAQAYAQENG-LFFMETSAKTATN-VNDIFY 165
                   L  ++   VT E+    A++ G + ++E S++ + N V D+F+
Sbjct: 119 TDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFH 169

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F      T+   F  ++ T+ +        ++DTAGQ
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAGQ 59

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 60  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 118

Query: 129 D------------ARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D             + +T E  +  A++   + ++E SA T   + ++F E
Sbjct: 119 DDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 11/122 (9%)

Query: 13  LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72
           + L+G   +GK++LV     GQF E    T+G         V    V  ++WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG----FNMRKVTKGNVTIKVWDLGGQPRF 57

Query: 73  HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADLL 128
            S+   Y RG  A + V D  ++   E AK  + +L      +G P +V+   GNK DL 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVL---GNKNDLP 114

Query: 129 DA 130
            A
Sbjct: 115 GA 116

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 18/137 (13%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           +A     N   ++++LG   AGK++++ +   G+ +     TIG  F  +T+   +  VK
Sbjct: 5   LAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTI-PTIG--FNVETVTYKN--VK 59

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGN 113
           F +WD  GQE    L   Y+    A I V D  ++   E AK   +EL A          
Sbjct: 60  FTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAK---EELHALLNEEELADA 116

Query: 114 PNMVMALAGNKADLLDA 130
           P +++A   NK DL  A
Sbjct: 117 PLLILA---NKQDLPGA 130

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 31/144 (21%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF-----------FSQTLAVNDATVK 60
           +++++GD G GKSSLV   VKG  I     TIG               S      D+   
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 61  F--EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN----- 113
           F  E+WD +G ERY     ++Y      I V+D++ + +    +KW  E+ A G      
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPL 142

Query: 114 ----------PNMVMALAGNKADL 127
                     P +V+   GNKAD+
Sbjct: 143 GSGGPGGLPVPYIVI---GNKADI 163

Length = 334

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
                 K++++G   AGK++++ +F+ G+ +     TIG    S    +    ++F +WD
Sbjct: 11  FPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIG----SNVEEIVYKNIRFLMWD 65

Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNK 124
             GQE   S    YY    A I+V D T++      K+ + + L  +     V+ +  NK
Sbjct: 66  IGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANK 125

Query: 125 ADLLDARKVTAEE 137
            DL  A  +T  E
Sbjct: 126 QDLKGA--MTPAE 136

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  +++++G   AGK++++ +   G+ +    +TI    F+    V    + F +W
Sbjct: 10  GNKEM--RILMVGLDAAGKTTILYKLKLGESV----TTIPTIGFN-VETVTYKNISFTVW 62

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
           D  GQ++   L   YY      I V D  ++   + A++ +  +  +    + V+ +  N
Sbjct: 63  DVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122

Query: 124 KADLLDARK 132
           K DL DA K
Sbjct: 123 KQDLPDAMK 131

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 13  LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQ 69
           +V+LG   AGK++++ R    +F EF  +     F ++ + V   N   V F  WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRL---KFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK----KWVQELQAQGNPNMVMALAGNKA 125
           E+   L   Y R     + V D  +    E AK    K  +  + QG P +V+A   NK 
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLA---NKQ 119

Query: 126 DLLDARKVTAEEAQAYAQE 144
           DL +A  V+  E      E
Sbjct: 120 DLPNALPVSEVEKLLALHE 138

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK-----FEIWDT 66
           K+++LGD G GKSSLV    K Q +     T+G +   +     + T +      E+WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 67  AGQ----ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
            G     E   S   ++Y      I V+D+TN+ S +   +W  E   + 
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRD 111

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 13/130 (10%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++LLG   AGKS+L+ +    + +     T+G  F  + L +    +   +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
             ++   Y       + V D +++A  + ++K ++ +      +G P +++A   NK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLA---NKQDL 113

Query: 128 LDARKVTAEE 137
             A  +TAEE
Sbjct: 114 PGA--LTAEE 121

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 21/136 (15%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD------ 65
           ++ +LG  G GK+++V +F+  +F E    T     +   + ++       I D      
Sbjct: 2   RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61

Query: 66  ---TAGQE----RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ---ELQAQGNPN 115
              TAGQE    R+  L     R + A I+VYDI +  SF   K   Q   E +  GN  
Sbjct: 62  YPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKE 116

Query: 116 MVMALAGNKADLLDAR 131
             + + GNK D    R
Sbjct: 117 PPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL ++G++ +GKS+LV R++ G +++  ES  G  F  + L V+  +    I D  G   
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQ-LESPEGGRFKKEVL-VDGQSHLLLIRDEGGA-- 57

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDA 130
                  +     A I V+ + ++ASF+   +   +L +  N + + + L G +  +  +
Sbjct: 58  ---PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISAS 114

Query: 131 RKVTAEEAQAYAQENGL---FFMETSAKTATNVNDIFYEIAKRL 171
                ++A+A      +    + ET A    NV  +F E A+++
Sbjct: 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 14/132 (10%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +W
Sbjct: 6   GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 58

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMAL 120
           D  GQ++   L   YY G    I V D  ++   + A+   QEL    N     + ++ +
Sbjct: 59  DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEAR---QELHRIINDREMRDALLLV 115

Query: 121 AGNKADLLDARK 132
             NK DL DA K
Sbjct: 116 FANKQDLPDAMK 127

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 18/123 (14%)

Query: 51  TLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA 110
           T+ V  A + F  WD  GQE   SL   YY  +   I V D T++  F  +K   +++  
Sbjct: 45  TIEVGKARLMF--WDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN 102

Query: 111 ----QGNPNMVMALAGNKADLLDARKVTAEEAQAY----AQENG---LFFMETSAKTATN 159
               +G P +V+A   NK DL DA  ++  E +          G         SA     
Sbjct: 103 NEALEGVPLLVLA---NKQDLPDA--LSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEG 157

Query: 160 VND 162
           V +
Sbjct: 158 VEE 160

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 38/188 (20%)

Query: 12  KLVLLGDVGAGKSSLVL------RFVKGQFIEFQESTIGA---------AFFSQTLAVND 56
           K V++GD   GK+ L+          + Q +     T+ A                 V+ 
Sbjct: 4   KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG 63

Query: 57  ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPN 115
            +V   +WDT G   +       Y  +   ++ + I +  S    K  W  E++    P 
Sbjct: 64  VSVSLRLWDTFGD--HDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIR-HFCPR 120

Query: 116 MVMALAGNKADL-------------------LDARKVTAEEAQAYAQENGLFFMETSAKT 156
           + + L G K DL                    +A  +  E  +A A+E G+ + ETS  T
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVT 180

Query: 157 ATNVNDIF 164
              V D+F
Sbjct: 181 QFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++V LG  GAGK++++ +  + +F++    TIG  F  +T  V    +KF IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIG--FNVET--VEYKNLKFTIWDVGGKHK 55

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
              L   YY    A + V D +++     A   + +L  +    + ++ +  NK D+  A
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115

Query: 131 RKVTAEE 137
             ++ EE
Sbjct: 116 --LSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 24/165 (14%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV------ 59
           NK I  K+V++G VGAGK++ V         +       A   S +      T       
Sbjct: 6   NKMIETKIVVIGPVGAGKTTFV-----RALSDKPLVITEADASSVSGKGKRPTTVAMDFG 60

Query: 60  ------KFEIW--DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ 111
                    +    T GQER+  +  +  RGA  AI++ D +   +F  A++ +  L ++
Sbjct: 61  SIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH-AEEIIDFLTSR 119

Query: 112 GNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAK 155
               +V+A+  NK DL DA     +  +A   E   +  +E  A 
Sbjct: 120 NPIPVVVAI--NKQDLFDALPPE-KIREALKLELLSVPVIEIDAT 161

Length = 187

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 18/126 (14%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++++LG  GAGK++++ R   G+ +     TIG  F  +T+   +  +KF++WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGQT- 54

Query: 72  YHSLAPM---YYRGAAAAIIVYDITNQASFERAKK----WVQELQAQGNPNMVMALAGNK 124
             S+ P    YY    A I V D T++     +K      ++E + +    +V A   NK
Sbjct: 55  --SIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFA---NK 109

Query: 125 ADLLDA 130
            D+  A
Sbjct: 110 QDMPGA 115

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 39/179 (21%)

Query: 14  VLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-----NDATVKFEIWDTAG 68
            + G    GKSSL L  + GQ +      +     +    V             + DT G
Sbjct: 1   AIFGRPNVGKSSL-LNALLGQNV----GIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPG 55

Query: 69  -----------QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV 117
                       E    +A      A   ++V D       E AK  +  L+ +G P ++
Sbjct: 56  LDEEGGLGRERVEEARQVA----DRADLVLLVVDSDLTPVEEEAK--LGLLRERGKP-VL 108

Query: 118 MALAGNKADLLDARKVTAEEAQAYAQE-NGLFFME----TSAKTATNVNDIFYEIAKRL 171
           + L  NK DL+      +EE +   +    L         SA     ++++  +IA+ L
Sbjct: 109 LVL--NKIDLVPE----SEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 9/149 (6%)

Query: 13  LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72
           +++LG  GAGK+S +L  +  +     ES +    F+ ++A+       E+ +  G +  
Sbjct: 2   ILVLGLDGAGKTS-LLHSLSSERS--LESVVPTTGFN-SVAIPTQDAIMELLEIGGSQNL 57

Query: 73  HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132
                 Y  G+   I V D  +      A++ + +L  Q  P++ + +  NK DL  AR 
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQL-LQHPPDLPLVVLANKQDLPAARS 116

Query: 133 VT----AEEAQAYAQENGLFFMETSAKTA 157
           V       E +  A+        TS    
Sbjct: 117 VQEIHKELELEPIARGRRWILQGTSLDDD 145

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G   AGK++++ +   G+ +     TIG  F  +T  V    +KF +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVVT-TIPTIG--FNVET--VEYKNLKFTMWDVGGQDK 73

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
              L   YY+     I V D  ++     A++ ++ + ++    + V+ +  NK DL +A
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133

Query: 131 RKVT 134
              T
Sbjct: 134 MSTT 137

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 22/128 (17%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-----KFEIWDT 66
           +++++G   AGK++++ +   G+ +    +TI       T+  N  TV      F +WD 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV----TTI------PTIGFNVETVEYKNISFTVWDV 51

Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAG 122
            GQ++   L   Y++     I V D  ++   ER  +  +ELQ   N     + V+ +  
Sbjct: 52  GGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELQRMLNEDELRDAVLLVFA 108

Query: 123 NKADLLDA 130
           NK DL +A
Sbjct: 109 NKQDLPNA 116

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 14/136 (10%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
           +     +++LLG   AGK+++ L+    Q      S I          V     K  +WD
Sbjct: 11  SSRQEVRILLLGLDNAGKTTI-LK----QLASEDISHITPTQGFNIKNVQADGFKLNVWD 65

Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALA 121
             GQ +       Y+      I V D  ++  FE A + + EL    +  G P +V A  
Sbjct: 66  IGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFA-- 123

Query: 122 GNKADLLDARKVTAEE 137
            NK DLL A    AEE
Sbjct: 124 -NKQDLLTA--APAEE 136

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 18/123 (14%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++++LG   AGK++++ +F  G+ I     T+G  F  +TL  N    K  IWD  GQ+ 
Sbjct: 16  RILMLGLDNAGKTTILKKF-NGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQKS 70

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAG-------NK 124
             S    Y+    A I V D +++A  E  K+ +Q+L  +        LAG       NK
Sbjct: 71  LRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEER------LAGATLLIFANK 124

Query: 125 ADL 127
            DL
Sbjct: 125 QDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 91  DITNQASFERAKKWVQELQAQGNPNMV---MALAGNKADLLDARKVTAEEAQAYAQENGL 147
           DI      E  K    EL+   +P +      L  NK DLLD  +   + A       G 
Sbjct: 245 DIEAVDPVEDYKTIRNELEKY-SPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG 303

Query: 148 FFMETSAKTATNVNDIFYEIAKRLPRVQPA 177
                SA T   ++++   + + L   +  
Sbjct: 304 PVFLISAVTGEGLDELLRALWELLEEARRE 333

Length = 335

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 31/154 (20%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------ESTIGAAFFSQTLAVNDATVKF 61
           K++L+G  G+GKSS+       + I F            +TI      Q+       +  
Sbjct: 1   KVLLMGLRGSGKSSM-------RSIIFSNYSPRDTLRLGATIDV---EQSHVRFLGNLTL 50

Query: 62  EIWDTAGQERY-----HSLAPMYYRGAAAAIIVYDITNQ---ASFERAKKWVQELQAQGN 113
            +WD  GQ+ +            +      I V+D+ ++          K ++ L  Q +
Sbjct: 51  NLWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALY-QYS 109

Query: 114 PNMVMALAGNKADLL--DARKVTAEEAQAYAQEN 145
           PN  + +  +K DLL  D RK   E+ +    E 
Sbjct: 110 PNAKVFVLIHKMDLLSEDERKEIFEDRKEEIIEE 143

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 37.0 bits (87), Expect = 0.002
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 120 LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +  NK DLLDA +   +  +   +  G      SA T   ++++  ++AK L
Sbjct: 119 VVLNKIDLLDAEERFEKLKELLKELKGKKVFPISALTGEGLDELLKKLAKLL 170

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 36/171 (21%)

Query: 16  LGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-- 72
           LG  G+GKS+L+  F+   F       TI   +     AVN  TV+       GQE+Y  
Sbjct: 10  LGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRY-----AVN--TVEVP-----GQEKYLI 57

Query: 73  -HSLAPMYYRGAAA---------AIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALA 121
              +                   A +VYD ++  SF    +  ++    G  P + +A  
Sbjct: 58  LREVGEDEEAILLNDAELAACDVACLVYDSSDPNSFSYCAEVYKKYFMLGEIPCLFVAA- 116

Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMET----SAKTATNVNDIFYEIA 168
             KADL + ++    +   + ++     +      S++   + N++F ++A
Sbjct: 117 --KADLDEQQQRAEVQPDEFCRK---LGLPPPLHFSSRLGDSSNELFTKLA 162

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 19/133 (14%)

Query: 14  VLLGDVGAGKSSLVLRFVKGQFIEFQESTI--GAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +LLG   +GK++L  +   G+      S     A+F+S     +    K  + D  G E+
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSN----SSKGKKLTLVDVPGHEK 59

Query: 72  YHSLAPMYYRGAAAAII-VYDITNQASFERAKKWVQE--------LQAQGNPNMVMALAG 122
                  Y + +  AI+ V D     +F++  + V E        L+   N   ++ +A 
Sbjct: 60  LRDKLLEYLKASLKAIVFVVDSA---TFQKNIRDVAEFLYDILTDLEKIKNKIPIL-IAC 115

Query: 123 NKADLLDARKVTA 135
           NK DL  A+    
Sbjct: 116 NKQDLFTAKPAKK 128

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 86  AIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE 144
           A++V D       +E   + ++EL+ +  P +V+    NK DL       + E +   ++
Sbjct: 89  ALLVVDAGVGPGEYE--LELIEELKERKIPYIVVI---NKIDL----GEESAELEKLEKK 139

Query: 145 NGLFFMETSAKTATNVNDIFYEIAKRLPR--VQPAP-----NPSGMVLM 186
            GL  +  SA T   ++++   I + LP    +P        P  +V++
Sbjct: 140 FGLPPIFVSALTGEGIDELKEAIIELLPEDFEEPTIVGDLVPPGDLVVL 188

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
PLN03108	210	Rab family protein; Provisional	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PLN03118	211	Rab family protein; Provisional	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.98
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
PTZ00099	176	rab6; Provisional	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
COG1159	298	Era GTPase [General function prediction only]	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
KOG1673	205	consensus Ras GTPases [General function prediction	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.84
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.84
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.83
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.82
PRK12317	425	elongation factor 1-alpha; Reviewed	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.81
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.81
PRK10218	607	GTP-binding protein; Provisional	99.8
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.8
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.79
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
PRK04004	586	translation initiation factor IF-2; Validated	99.77
COG0218	200	Predicted GTPase [General function prediction only	99.77
COG2262	411	HflX GTPases [General function prediction only]	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.77
COG1163	365	DRG Predicted GTPase [General function prediction	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.74
COG1084	346	Predicted GTPase [General function prediction only	99.74
CHL00071	409	tufA elongation factor Tu	99.73
PLN00043	447	elongation factor 1-alpha; Provisional	99.73
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.73
PTZ00141	446	elongation factor 1- alpha; Provisional	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
PRK00049	396	elongation factor Tu; Reviewed	99.72
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.71
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.7
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.7
PLN03127	447	Elongation factor Tu; Provisional	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.68
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.68
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.67
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.67
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.65
PRK13351	687	elongation factor G; Reviewed	99.64
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.64
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.63
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.63
COG0536	369	Obg Predicted GTPase [General function prediction	99.63
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.63
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.62
PRK09866	741	hypothetical protein; Provisional	99.61
PRK09602	396	translation-associated GTPase; Reviewed	99.6
PRK12739	691	elongation factor G; Reviewed	99.58
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.58
KOG1145	683	consensus Mitochondrial translation initiation fac	99.57
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.57
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.56
KOG0090	238	consensus Signal recognition particle receptor, be	99.56
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.56
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.54
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.54
PRK00007	693	elongation factor G; Reviewed	99.51
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.5
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.5
PRK12740	668	elongation factor G; Reviewed	99.49
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.48
PRK13768	253	GTPase; Provisional	99.48
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.47
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.47
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.46
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.45
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.45
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.44
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.43
PRK14845	1049	translation initiation factor IF-2; Provisional	99.43
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.42
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.41
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.39
PTZ00258	390	GTP-binding protein; Provisional	99.39
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.39
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.38
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.37
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.37
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.36
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.36
PRK07560	731	elongation factor EF-2; Reviewed	99.35
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.35
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.34
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.33
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.32
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.32
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.32
KOG0410	410	consensus Predicted GTP binding protein [General f	99.31
PTZ00416	836	elongation factor 2; Provisional	99.3
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.3
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.29
PRK09601	364	GTP-binding protein YchF; Reviewed	99.28
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.28
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.28
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.24
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.22
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.2
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.2
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.17
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.14
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.11
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.11
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.09
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.08
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.08
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.07
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.07
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.06
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.02
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.02
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.01
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.01
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.95
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.94
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.94
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.93
PRK12289	352	GTPase RsgA; Reviewed	98.92
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.92
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.9
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.9
PRK12288	347	GTPase RsgA; Reviewed	98.88
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.88
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.87
PRK00098	298	GTPase RsgA; Reviewed	98.85
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.83
COG1161	322	Predicted GTPases [General function prediction onl	98.81
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.79
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.78
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.75
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.75
KOG1143	591	consensus Predicted translation elongation factor	98.74
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.7
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.69
KOG2486	320	consensus Predicted GTPase [General function predi	98.68
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.68
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.67
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.64
KOG0460	449	consensus Mitochondrial translation elongation fac	98.59
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.55
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.54
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.54
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.54
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.52
PRK12288	347	GTPase RsgA; Reviewed	98.49
PRK10416	318	signal recognition particle-docking protein FtsY;	98.49
PRK12289	352	GTPase RsgA; Reviewed	98.48
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.46
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.46
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.45
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.44
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.43
PRK13796	365	GTPase YqeH; Provisional	98.42
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.41
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.41
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.41
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.41
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.39
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.37
PRK14974	336	cell division protein FtsY; Provisional	98.36
PRK01889	356	GTPase RsgA; Reviewed	98.31
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.31
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.29
PRK13695	174	putative NTPase; Provisional	98.27
cd03112	158	CobW_like The function of this protein family is u	98.27
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.26
PRK13796	365	GTPase YqeH; Provisional	98.26
PRK00098	298	GTPase RsgA; Reviewed	98.24
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.24
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.24
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.24
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.2
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.19
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.18
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.17
cd03110	179	Fer4_NifH_child This protein family's function is	98.11
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.11
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.09
COG1162	301	Predicted GTPases [General function prediction onl	98.09
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.08
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.04
COG0523	323	Putative GTPases (G3E family) [General function pr	98.03
cd03114	148	ArgK-like The function of this protein family is u	98.02
COG1162	301	Predicted GTPases [General function prediction onl	98.02
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.98
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.91
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.91
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.91
COG3523	1188	IcmF Type VI protein secretion system component Va	97.89
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.89
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.87
KOG2484	435	consensus GTPase [General function prediction only	97.87
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.86
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.86
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.85
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.84
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.82
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.81
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.81
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.8
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.79
cd03111	106	CpaE_like This protein family consists of proteins	97.77
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.77
PRK10867	433	signal recognition particle protein; Provisional	97.76
TIGR00959	428	ffh signal recognition particle protein. This mode	97.75
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.73
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.73
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.69
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.63
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.63
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.63
PRK08118	167	topology modulation protein; Reviewed	97.61
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.6
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.6
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.58
PRK07261	171	topology modulation protein; Provisional	97.57
PRK14737	186	gmk guanylate kinase; Provisional	97.56
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.56
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.53
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.5
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.5
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.49
KOG0099	379	consensus G protein subunit Galphas, small G prote	97.49
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.48
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.47
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.46
cd02036	179	MinD Bacterial cell division requires the formatio	97.45
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.44
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.44
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.43
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.41
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.4
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.4
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.4
PRK05480	209	uridine/cytidine kinase; Provisional	97.39
PRK14738	206	gmk guanylate kinase; Provisional	97.36
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.36
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.34
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.33
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.32
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.31
PRK01889	356	GTPase RsgA; Reviewed	97.31
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.31
PRK06217	183	hypothetical protein; Validated	97.3
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.29
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.28
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.28
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.28
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.28
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.27
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.27
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.26
smart00382	148	AAA ATPases associated with a variety of cellular	97.26
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.26
PRK13851	344	type IV secretion system protein VirB11; Provision	97.26
KOG1533	290	consensus Predicted GTPase [General function predi	97.25
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.25
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.25
PF00004	132	AAA: ATPase family associated with various cellula	97.24
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.24
PRK03839	180	putative kinase; Provisional	97.24
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.23
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.23
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.22
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.22
PRK05541	176	adenylylsulfate kinase; Provisional	97.22
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.22
PTZ00088	229	adenylate kinase 1; Provisional	97.21
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.2
PRK14530	215	adenylate kinase; Provisional	97.2
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.19
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.18
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.18
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.18
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.18
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.17
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.16
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.16
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.15
PRK13949	169	shikimate kinase; Provisional	97.15
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.15
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.14

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-43  Score=241.59  Aligned_cols=176  Identities=44%  Similarity=0.707  Sum_probs=168.0

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+.+||+|+|.+|+|||.|+.++.++.+...+..++|+++....+.+++...++++|||+||++++....+|+++||
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            45577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDI  163 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~  163 (200)
                      ++|+|||+++.+||+.+..|+.++.++...++|.++|+||+|+.+.+.++.++++.++..++++ ++++||+++.|++++
T Consensus        84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~  163 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA  163 (205)
T ss_pred             eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence            9999999999999999999999999998889999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhccccCCCCCC
Q 029029          164 FYEIAKRLPRVQPAPNP  180 (200)
Q Consensus       164 ~~~l~~~~~~~~~~~~~  180 (200)
                      |..|...+..+.+....
T Consensus       164 F~~la~~lk~~~~~~~~  180 (205)
T KOG0084|consen  164 FLTLAKELKQRKGLHVK  180 (205)
T ss_pred             HHHHHHHHHHhcccCCC
Confidence            99999999887665543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-42  Score=236.31  Aligned_cols=193  Identities=62%  Similarity=0.977  Sum_probs=177.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+++|..++|||||+.++..+.+.+...+++|..+....+.++...++|.+|||+|+++|..+.++|+++|+++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            45689999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|||+++.+||..+..|++++.+...+++-+.+++||+||.+.+++..+++..+++..+..++++||+++.|++++|..
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            99999999999999999999999987788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccCCCCCC------CCceeccCCCCCCCCCCCCC
Q 029029          167 IAKRLPRVQPAPNP------SGMVLMDRPGERTASASCCS  200 (200)
Q Consensus       167 l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~c~~  200 (200)
                      |.+++........+      .++. +........+++|||
T Consensus       162 Ia~~lp~~~~~~~~~~~~~~~g~~-l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  162 IAEKLPCSDPQERQGLPNRRQGVD-LNSNQEPARPSGCCA  200 (200)
T ss_pred             HHHhccCcccccccccccccccee-cccCCCCcCcCCcCC
Confidence            99999998877664      3444 333336777888986

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-41  Score=231.92  Aligned_cols=199  Identities=41%  Similarity=0.674  Sum_probs=176.1

Q ss_pred             CCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q 029029            2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR   81 (200)
Q Consensus         2 ~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   81 (200)
                      .+.+...+..|++++|..++||||||+++..+.+...+.+++|+++...++.+.+..+.+++|||+||++++.+.+.|++
T Consensus        14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~R   93 (221)
T KOG0094|consen   14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   93 (221)
T ss_pred             cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhcc
Confidence            44566677799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ++.++|+|||+++..+|+...+|++.+...+.. ++.+++|+||.||.+.+++..++....+++++..|+++||+.|.||
T Consensus        94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV  173 (221)
T KOG0094|consen   94 DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENV  173 (221)
T ss_pred             CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence            999999999999999999999999999998765 5889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccCCCC---C---CCCceeccCCCCCCCCC--CCCC
Q 029029          161 NDIFYEIAKRLPRVQPAP---N---PSGMVLMDRPGERTASA--SCCS  200 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~--~c~~  200 (200)
                      +.+|..+...+..+....   .   +..+.+...|++..+++  .|||
T Consensus       174 k~lFrrIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~~~~~~C  221 (221)
T KOG0094|consen  174 KQLFRRIAAALPGMEVLEILSKQESMVDINLKGSPNEQQASKPGLCSC  221 (221)
T ss_pred             HHHHHHHHHhccCccccccccccccceeEEccCCCCcccccCCCCCCC
Confidence            999999999988874322   1   22333333455555554  5887

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-38  Score=222.58  Aligned_cols=172  Identities=40%  Similarity=0.698  Sum_probs=164.6

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ....-+||+++|.++||||+++.++..+.+...+..++|+++...++..++..+.+++|||+|+++++.....|+++|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            34668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +++|||+++..+|+++..|++.+..+...++|.++|+||+|+...++++.+..++++..+|++|+|+||++|.||++.|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccCCC
Q 029029          166 EIAKRLPRVQPA  177 (200)
Q Consensus       166 ~l~~~~~~~~~~  177 (200)
                      .|++.+....+.
T Consensus       168 ~La~~i~~k~~~  179 (207)
T KOG0078|consen  168 SLARDILQKLED  179 (207)
T ss_pred             HHHHHHHhhcch
Confidence            999999865444

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.4e-38  Score=210.33  Aligned_cols=170  Identities=39%  Similarity=0.705  Sum_probs=159.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .....+||+++|.+|+|||||+-++..+.+.+....++|+++..+.+.+++..+++.+|||+|+++++.+.+.|+++|.+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            33557999999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      +|+|||++.+++|..+..|++++..+. .+++..++|+||+|....+.++-++..++++++++.|+++||++..+++..|
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F  166 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF  166 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence            999999999999999999999998875 4677888999999988788999999999999999999999999999999999


Q ss_pred             HHHHHhccccC
Q 029029          165 YEIAKRLPRVQ  175 (200)
Q Consensus       165 ~~l~~~~~~~~  175 (200)
                      +.++++|.+..
T Consensus       167 eelveKIi~tp  177 (209)
T KOG0080|consen  167 EELVEKIIETP  177 (209)
T ss_pred             HHHHHHHhcCc
Confidence            99999998754

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.2e-37  Score=222.29  Aligned_cols=170  Identities=32%  Similarity=0.575  Sum_probs=155.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.+..++..+++++|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999988887777778888887777888888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|||++++.+|+.+..|+..+.... ++.|+++|+||.|+.+.+.+..++++.+++.++++|+++||++|.|++++|+++
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999997763 689999999999998877888999999999999999999999999999999999


Q ss_pred             HHhccccCCCC
Q 029029          168 AKRLPRVQPAP  178 (200)
Q Consensus       168 ~~~~~~~~~~~  178 (200)
                      .+.+..+.+..
T Consensus       163 ~~~i~~~~~~~  173 (189)
T cd04121         163 ARIVLMRHGRP  173 (189)
T ss_pred             HHHHHHhcCCC
Confidence            99888776633

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-37  Score=213.48  Aligned_cols=168  Identities=45%  Similarity=0.767  Sum_probs=161.5

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .+...+|++++|+.|+|||+|+.+++...+.+.+..++|+++....+.+++..+++++|||.|++.++.....|++.+.+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|+|||++.+++|+.+..|+..++.+..++..+++++||+|+...+.++.++.+.+++.+++.++++||+++.+++|.|.
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccc
Q 029029          166 EIAKRLPR  173 (200)
Q Consensus       166 ~l~~~~~~  173 (200)
                      .....+.+
T Consensus       162 nta~~Iy~  169 (216)
T KOG0098|consen  162 NTAKEIYR  169 (216)
T ss_pred             HHHHHHHH
Confidence            88887766

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.2e-37  Score=224.55  Aligned_cols=189  Identities=31%  Similarity=0.604  Sum_probs=161.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +||+++|++|+|||||+++|+++.+...+.++.+.++....+..+ +..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999888888888888888777777777 7889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIF  164 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  164 (200)
                      ||++++++|+.+..|+..+....    ..++|+++|+||+|+.+.+....+++..+++..+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876531    3678999999999997666778888999999988 689999999999999999


Q ss_pred             HHHHHhccccCCCCCCC------CceeccCCCCCCCCCCCC
Q 029029          165 YEIAKRLPRVQPAPNPS------GMVLMDRPGERTASASCC  199 (200)
Q Consensus       165 ~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~c~  199 (200)
                      ++|.+.+........+.      ..+......+.+++++||
T Consensus       161 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            99999887754322211      344455567778888898

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.8e-36  Score=220.26  Aligned_cols=164  Identities=34%  Similarity=0.653  Sum_probs=150.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +.|+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+++|||+|+++++.++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46999999999999999999999998888889888888888888888999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      |++++++|+.+..|+..+......+.|+++|+||+|+.+.+++..++..++++.+ ++.|++|||++|.|++++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887765578999999999999877888888888888875 789999999999999999999999


Q ss_pred             hcccc
Q 029029          170 RLPRV  174 (200)
Q Consensus       170 ~~~~~  174 (200)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            88654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-37  Score=214.95  Aligned_cols=170  Identities=44%  Similarity=0.763  Sum_probs=162.6

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+-+||+++|++++|||-|+.++..+.+.....+++|+++....+.+++..++.+||||+|+++|+.....|++.+.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      ++++|||++...+|+.+.+|+.+++.+.++++++++|+||+||.+.+.++.++.+.++++.+..++++||.++.|++++|
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccc
Q 029029          165 YEIAKRLPRV  174 (200)
Q Consensus       165 ~~l~~~~~~~  174 (200)
                      +.++..|...
T Consensus       169 ~~~l~~I~~~  178 (222)
T KOG0087|consen  169 ERVLTEIYKI  178 (222)
T ss_pred             HHHHHHHHHH
Confidence            9888877653

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.6e-35  Score=214.62  Aligned_cols=189  Identities=40%  Similarity=0.675  Sum_probs=160.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +||+++|++|||||||++++.++.+.. .+.++.+.++....+.+++..+.+++|||||++.+...+..++..+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999887753 4566777777666778888889999999999999988888899999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      +|++++++++.+..|+..+......+.|+++|+||.|+...+.+..++...++..++++|+++||++|.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876568899999999999766677778888999889999999999999999999999999


Q ss_pred             hccccCCCCCCCCc-eeccCCCCCCCCCCCC
Q 029029          170 RLPRVQPAPNPSGM-VLMDRPGERTASASCC  199 (200)
Q Consensus       170 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~c~  199 (200)
                      .+........+.+. .+..-....++.++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         161 ELKHRKYEQPDEGKFKISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHhccccCCCCcEEeccccCcccccCCCC
Confidence            99888655443333 4444445566777887

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.3e-36  Score=206.50  Aligned_cols=170  Identities=39%  Similarity=0.689  Sum_probs=157.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|.+|+|||||++++.+..+...+..++|.++..+.+.+++..+.+++|||+|++++..+...+++++|..+
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            44799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCcCccC--CCCCCHHHHHHHHHHc-CCcEEEecCCCCCCH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLD--ARKVTAEEAQAYAQEN-GLFFMETSAKTATNV  160 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  160 (200)
                      ++||++++.+|+.+..|.+++.....    ...|+|+++||+|+.+  .++++.+.++.+|+.. ++||||+||+...|+
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            99999999999999999999888654    4678999999999965  3788999999999875 579999999999999


Q ss_pred             HHHHHHHHHhccccCCC
Q 029029          161 NDIFYEIAKRLPRVQPA  177 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~~~  177 (200)
                      +++|+.+.+.+..+...
T Consensus       167 ~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  167 DEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHhccch
Confidence            99999999999988754

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.3e-35  Score=213.27  Aligned_cols=185  Identities=36%  Similarity=0.610  Sum_probs=159.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+++||++|++.+...+..++.++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999988887777888888777777888888899999999999999989999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |++++++++.+..|+..+........|+++++||.|+.+...+..++...+++..+++++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988655678999999999998777778888888888889999999999999999999999999


Q ss_pred             ccccCCCCCCCCceeccCCCCCCCCCCC
Q 029029          171 LPRVQPAPNPSGMVLMDRPGERTASASC  198 (200)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c  198 (200)
                      +..+......+.   ..-++..+++..|
T Consensus       161 ~~~~~~~~~~~~---~~~~~~~~~~~~~  185 (188)
T cd04125         161 IIKRLEEQELSP---KNIKQQFKKKNNC  185 (188)
T ss_pred             HHHHhhcCcCCc---cccccccccccCc
Confidence            988765554442   2334455555555

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=3.1e-35  Score=214.30  Aligned_cols=191  Identities=37%  Similarity=0.625  Sum_probs=162.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+|+|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999988887778888888887778888888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|||++++++++.+..|+..+.... ...|+++|+||+|+.+...+..++...+++..+++++++||++|.|++++|++|
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            9999999999999999999987753 578999999999998777777888888988889999999999999999999999


Q ss_pred             HHhccccCCCCCCCCcee-----ccCCCCCCCCCCCC
Q 029029          168 AKRLPRVQPAPNPSGMVL-----MDRPGERTASASCC  199 (200)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~c~  199 (200)
                      .+.+........+.....     ..-+.+...++.||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         163 TELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence            999988665555443332     23344445566676

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.1e-35  Score=213.85  Aligned_cols=185  Identities=31%  Similarity=0.528  Sum_probs=154.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|.+|+|||||+++|..+.+...+.++.+..+ ......++..+.+++|||+|++++...+..++..+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999998888776777766444 3455677888899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           92 ITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ++++++++.+..|+..+....   ..+.|+++|+||+|+.+.+.+...+...+++..+++++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999998887653   25789999999999987777788888888888899999999999999999999999


Q ss_pred             HhccccCCCCCCCCceeccCCCCCCCCCCCCC
Q 029029          169 KRLPRVQPAPNPSGMVLMDRPGERTASASCCS  200 (200)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  200 (200)
                      +.+..+..+..+..   ...-..+.+++.|||
T Consensus       160 ~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~  188 (190)
T cd04144         160 RALRQQRQGGQGPK---GGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHhhcccCCCc---CCCCCcccccccCce
Confidence            99887766654432   222344455566665

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=7.8e-35  Score=214.58  Aligned_cols=166  Identities=45%  Similarity=0.761  Sum_probs=152.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+++||++|++++...+..+++.++++|
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999988887777888888888888888888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+++
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l  169 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI  169 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999888766789999999999998777788888999999999999999999999999999999


Q ss_pred             HHhccc
Q 029029          168 AKRLPR  173 (200)
Q Consensus       168 ~~~~~~  173 (200)
                      .+.+.+
T Consensus       170 ~~~i~~  175 (216)
T PLN03110        170 LLEIYH  175 (216)
T ss_pred             HHHHHH
Confidence            988755

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=6.2e-35  Score=207.03  Aligned_cols=163  Identities=45%  Similarity=0.771  Sum_probs=149.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      .+||+++|++|+|||||++++..+.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999888877777888787777778888889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      ||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776678999999999999887778888899999999999999999999999999999998


Q ss_pred             hcc
Q 029029          170 RLP  172 (200)
Q Consensus       170 ~~~  172 (200)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd04122         162 KIY  164 (166)
T ss_pred             HHh
Confidence            764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=5e-35  Score=211.65  Aligned_cols=184  Identities=32%  Similarity=0.557  Sum_probs=155.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4579999999999999999999998888777777776554 556677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999999998887653 357899999999998776667777788888888899999999999999999999


Q ss_pred             HHHhccccCCCCCCCCceeccCCCCCCCCCCCC
Q 029029          167 IAKRLPRVQPAPNPSGMVLMDRPGERTASASCC  199 (200)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  199 (200)
                      |++.+....++..++       .......+.||
T Consensus       162 l~~~l~~~~~~~~~~-------~~~~~~~~~~~  187 (189)
T PTZ00369        162 LVREIRKYLKEDMPS-------QKQKKKGGLCL  187 (189)
T ss_pred             HHHHHHHHhhccchh-------hhhhccCCeee
Confidence            999988765544333       23344455565

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=6.2e-35  Score=214.52  Aligned_cols=184  Identities=36%  Similarity=0.602  Sum_probs=146.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|.+|+|||||+++|+.+.+.. ..++.+..+....    ...+.+.+|||+|++.+..++..++.++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999888764 4566665543332    24678999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC-------------------CCCCCHHHHHHHHHHcC-----
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-------------------ARKVTAEEAQAYAQENG-----  146 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  146 (200)
                      |++++++|+.+..|+..+......+.|+++|+||+|+.+                   .+.+..+++..+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888877765556799999999999975                   56788899999998876     


Q ss_pred             ---------CcEEEecCCCCCCHHHHHHHHHHhccccCCCCC---CCCceeccCCCCCCCCCCCC
Q 029029          147 ---------LFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN---PSGMVLMDRPGERTASASCC  199 (200)
Q Consensus       147 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~c~  199 (200)
                               ++|++|||++|.||+++|..+++.+.....+..   ++.-.-...++-+..+..||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence                     689999999999999999999988875432222   11111123344455555666

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.5e-34  Score=212.34  Aligned_cols=165  Identities=38%  Similarity=0.712  Sum_probs=147.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      .+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+ ++..+.+++|||+|++.+...+..++.++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999988887777788887777777766 4667899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |||++++++++.+..|+..+..... ...|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998876533 457889999999998777788888999999999999999999999999999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      .+.+...
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9988765

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1e-34  Score=208.26  Aligned_cols=163  Identities=30%  Similarity=0.544  Sum_probs=145.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +++..+||+++|..|+|||||++++..+.+...+.|+.+..+ .....+++..+.+++|||+|++.+..++..+++++|+
T Consensus         1 ~~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~   79 (182)
T cd04172           1 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   79 (182)
T ss_pred             CCcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCE
Confidence            356789999999999999999999999998888888887655 4567778889999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEE
Q 029029           86 AIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFME  151 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  151 (200)
                      +|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..+++.++++.+++ +|++
T Consensus        80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E  158 (182)
T cd04172          80 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  158 (182)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999997 79999988764 6799999999999864            245888999999999996 8999


Q ss_pred             ecCCCCCC-HHHHHHHHHHh
Q 029029          152 TSAKTATN-VNDIFYEIAKR  170 (200)
Q Consensus       152 ~Sa~~~~~-i~~~~~~l~~~  170 (200)
                      |||++|.| ++++|..+++.
T Consensus       159 ~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         159 CSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             CCcCCCCCCHHHHHHHHHHH
Confidence            99999998 99999998874

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.1e-34  Score=204.55  Aligned_cols=165  Identities=42%  Similarity=0.736  Sum_probs=150.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+++||++|++.+...+..+++++|++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999998888888888888877778888888999999999999988888899999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999876557899999999999987777788888899999999999999999999999999999


Q ss_pred             Hhccc
Q 029029          169 KRLPR  173 (200)
Q Consensus       169 ~~~~~  173 (200)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            88753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2.1e-34  Score=205.48  Aligned_cols=159  Identities=34%  Similarity=0.602  Sum_probs=143.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|.+|+|||||+.++..+.+...+.++.+..+ ...+..++..+++++|||+|+++++.+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888888887665 445667888999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCC----------CCCHHHHHHHHHHcCC-cEEEecCCCCC
Q 029029           91 DITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDAR----------KVTAEEAQAYAQENGL-FFMETSAKTAT  158 (200)
Q Consensus        91 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (200)
                      |++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.+          .+..+++..+++.+++ .|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987764 579999999999996543          4778899999999998 59999999999


Q ss_pred             CHHHHHHHHHHhc
Q 029029          159 NVNDIFYEIAKRL  171 (200)
Q Consensus       159 ~i~~~~~~l~~~~  171 (200)
                      ||+++|+.+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.2e-34  Score=202.42  Aligned_cols=160  Identities=38%  Similarity=0.657  Sum_probs=146.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+++||++|++.+...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999998888878888888877778888888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |++++++|+.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++|+++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887655679999999999998777788889999999999999999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2e-34  Score=205.49  Aligned_cols=165  Identities=30%  Similarity=0.533  Sum_probs=146.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      .+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++|||+|++.+..++..++..+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            57999999999999999999999888777777776444 44567788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.++...+++.++++|++|||++|.|++++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998888777643 36799999999999987778888899999999999999999999999999999999


Q ss_pred             HhccccC
Q 029029          169 KRLPRVQ  175 (200)
Q Consensus       169 ~~~~~~~  175 (200)
                      +.+....
T Consensus       161 ~~~~~~~  167 (172)
T cd04141         161 REIRRKE  167 (172)
T ss_pred             HHHHHhc
Confidence            8877643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=198.99  Aligned_cols=193  Identities=36%  Similarity=0.660  Sum_probs=164.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ...++.+++|++-+|||+|++.++.+.+.....|+.|++++..-+.+ ++..+++++|||+|+++++...++|++++=++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35689999999999999999999999999999999999988876665 67889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCe-EEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGN-PNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      ++|||++++++|+.+..|+++-..... +.++ +.+|++|+||...+++..++++++++.+++.|+++||++|.|+++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            999999999999999999998777644 4444 67889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccCCC--CC----------CCCceeccCCCCCCCCCCCCC
Q 029029          165 YEIAKRLPRVQPA--PN----------PSGMVLMDRPGERTASASCCS  200 (200)
Q Consensus       165 ~~l~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~c~~  200 (200)
                      ..|.+.+...-.+  ..          ...--+.-++.....+|.|||
T Consensus       166 ~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  166 DMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence            9998877653211  11          111112334556778899998

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=196.60  Aligned_cols=165  Identities=41%  Similarity=0.683  Sum_probs=155.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      .-++.+|+|.+|+|||+|+.++..+.+...+..++|+++...+..+++..++++|||++|++.++.+...++++.+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |||.++.++|.++.+|++.++... +..|-++|+||.|..+.+.+..++++.++...++.+|++||+++.|++..|.-|.
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit  165 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT  165 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence            999999999999999999999874 5789999999999999999999999999999999999999999999999999888


Q ss_pred             Hhcccc
Q 029029          169 KRLPRV  174 (200)
Q Consensus       169 ~~~~~~  174 (200)
                      ++....
T Consensus       166 ~qvl~~  171 (198)
T KOG0079|consen  166 KQVLQA  171 (198)
T ss_pred             HHHHHH
Confidence            776543

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=6.1e-34  Score=206.20  Aligned_cols=163  Identities=29%  Similarity=0.500  Sum_probs=142.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +.+||+++|+.|+|||||++++..+.+...+.++.+..+ .....+++..+.+++|||+|+++++.++..++.++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            458999999999999999999999988888888887554 3445678888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcC-CcEEEecC
Q 029029           89 VYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENG-LFFMETSA  154 (200)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa  154 (200)
                      |||++++.+|+.+. .|+..+... .++.|+++|+||.|+.+..            .+..+++..+++.++ ++|+++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999996 688877665 3679999999999996542            356678889998888 58999999


Q ss_pred             CCCCCHHHHHHHHHHhccc
Q 029029          155 KTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~  173 (200)
                      ++|.|++++|+++++.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=5e-34  Score=202.19  Aligned_cols=162  Identities=38%  Similarity=0.655  Sum_probs=146.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+..++....+++||++|++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            69999999999999999999998887777788887776667777788899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |.+++++++.+..|+..+........|+++|+||+|+.+.+....++..++++..+++++++||++|.|++++|+++.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999887665678999999999998777777888888888889999999999999999999999886


Q ss_pred             cc
Q 029029          171 LP  172 (200)
Q Consensus       171 ~~  172 (200)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            54

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-35  Score=193.62  Aligned_cols=169  Identities=34%  Similarity=0.613  Sum_probs=159.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ..-+|++++|+..+|||||+.++++..+.+..-++.|+++..+++......+++++|||.|+++++.+...++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            44679999999999999999999999999888899999998888888888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      ++||+++.++|+.++.|...+......+.|+|+++||+|+.+++.++.+..+.+++.+|..||++||+.+.|++.+|+.+
T Consensus        99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l  178 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL  178 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccCC
Q 029029          168 AKRLPRVQP  176 (200)
Q Consensus       168 ~~~~~~~~~  176 (200)
                      ...+-+...
T Consensus       179 v~~Ic~kms  187 (193)
T KOG0093|consen  179 VDIICDKMS  187 (193)
T ss_pred             HHHHHHHhh
Confidence            988766543

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.5e-33  Score=204.56  Aligned_cols=186  Identities=40%  Similarity=0.689  Sum_probs=152.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +||+|+|++|+|||||+++|+++.+.. .+.++.+..+....+.+++..+.+.+||++|++++...+..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999888764 5677887777777888889899999999999999988888899999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC----CCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA----RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      ||++++.+++.+..|+..+... ..+.|+++|+||.|+.+.    ..+...++..++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999988775 357899999999998542    34455677888888889999999999999999999


Q ss_pred             HHHHhccccCCCC--CCCCceeccCCCCCCCCCCCC
Q 029029          166 EIAKRLPRVQPAP--NPSGMVLMDRPGERTASASCC  199 (200)
Q Consensus       166 ~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~c~  199 (200)
                      ++.+.+.......  ...+.-...+  +..+.++||
T Consensus       160 ~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  193 (193)
T cd04118         160 KVAEDFVSRANNQMNTEKGVDLGQK--KNSYFYSCC  193 (193)
T ss_pred             HHHHHHHHhcccccCCCCccccCCc--CCCCCCCCC
Confidence            9999886643221  1222222222  235788888

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=6.5e-34  Score=201.72  Aligned_cols=163  Identities=47%  Similarity=0.762  Sum_probs=148.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+++||+||++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999998888777778888777777888888889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      ||+++++++..+..|+..+......+.|+++++||.|+.+.+.+..+++..+++..+++++++||++|.|++++|.++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998875567899999999999877778888899999999999999999999999999999998


Q ss_pred             hcc
Q 029029          170 RLP  172 (200)
Q Consensus       170 ~~~  172 (200)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=9.3e-34  Score=200.92  Aligned_cols=162  Identities=29%  Similarity=0.612  Sum_probs=147.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+++|||+|++.+...+..++..+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888888888888888888889999999999999998889999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQGN-----PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      |.+++.+++.+..|+..+.....     .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999877543     5789999999999976566778888888888899999999999999999999


Q ss_pred             HHHHhcc
Q 029029          166 EIAKRLP  172 (200)
Q Consensus       166 ~l~~~~~  172 (200)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1e-33  Score=202.61  Aligned_cols=159  Identities=30%  Similarity=0.546  Sum_probs=141.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++|||+|++.+..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999988888888886655 45677788999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEEecCC
Q 029029           90 YDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFMETSAK  155 (200)
Q Consensus        90 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (200)
                      ||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..+++.++++.+++ +|++|||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 79999988764 6789999999999864            235788999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHh
Q 029029          156 TATN-VNDIFYEIAKR  170 (200)
Q Consensus       156 ~~~~-i~~~~~~l~~~  170 (200)
                      +|.+ ++++|..+++.
T Consensus       159 ~~~~~v~~~F~~~~~~  174 (178)
T cd04131         159 TSEKSVRDIFHVATMA  174 (178)
T ss_pred             cCCcCHHHHHHHHHHH
Confidence            9995 99999999884

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.1e-33  Score=207.57  Aligned_cols=165  Identities=27%  Similarity=0.476  Sum_probs=146.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|+.|+|||||++++..+.+...+.++.+..+. ..+.+++..+.+++|||+|++.+..+...++.++|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            46889999999999999999999999998888888876653 45777889999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEEec
Q 029029           88 IVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFMETS  153 (200)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S  153 (200)
                      +|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..++++++++.+++ .|++||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999999985 89999988764 5789999999999864            256888999999999999 699999


Q ss_pred             CCCCC-CHHHHHHHHHHhcccc
Q 029029          154 AKTAT-NVNDIFYEIAKRLPRV  174 (200)
Q Consensus       154 a~~~~-~i~~~~~~l~~~~~~~  174 (200)
                      |++|. |++++|..++..+...
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHh
Confidence            99998 8999999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.1e-33  Score=203.07  Aligned_cols=165  Identities=35%  Similarity=0.610  Sum_probs=147.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC----------CeEEEEEEEeCCCccccccchhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----------DATVKFEIWDTAGQERYHSLAPM   78 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~   78 (200)
                      +.+||+++|++|||||||++++.++.+...+.++.+.++........          +..+.+.+||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56899999999999999999999998888888888877766665553          45688999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA  157 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (200)
                      +++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999887753 357899999999999877778888899999999999999999999


Q ss_pred             CCHHHHHHHHHHhccc
Q 029029          158 TNVNDIFYEIAKRLPR  173 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~  173 (200)
                      .|++++|++|.+.+.+
T Consensus       163 ~~v~~l~~~l~~~~~~  178 (180)
T cd04127         163 TNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.6e-33  Score=198.86  Aligned_cols=161  Identities=43%  Similarity=0.770  Sum_probs=152.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|+.+||||||+++|.++.+...+.++.|.+........++..+.+++||++|++.+......++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999998898999899999999999999999999999999998888899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029           92 ITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      .+++++++.+..|+..+........|+++++||.|+.+.+.++.++++.+++.++++|+++||+++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998666799999999999988888999999999999999999999999999999999999876


Q ss_pred             c
Q 029029          172 P  172 (200)
Q Consensus       172 ~  172 (200)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.6e-33  Score=206.48  Aligned_cols=164  Identities=36%  Similarity=0.536  Sum_probs=147.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+++||++|++.+...+..++.++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999998888888889998888777777754 578999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      ||++++++|+.+..|+..+....   ..+.|+++|+||+|+.+.+.+..+....+++.++++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999988753   245689999999999877778888899999999999999999999999999999


Q ss_pred             HHHhcccc
Q 029029          167 IAKRLPRV  174 (200)
Q Consensus       167 l~~~~~~~  174 (200)
                      +.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.6e-33  Score=198.41  Aligned_cols=163  Identities=45%  Similarity=0.795  Sum_probs=148.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+++|++|||||||++++.++.+.....++.+.++....+..++....+.+||+||++.+...+..++..++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            35799999999999999999999888877778888888888888888888999999999999999899999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |+|++++.++..+..|+..+......+.|+++|+||.|+.+.+....++...++...+++++++||++|.|++++|+++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998887655799999999999987777788888899888899999999999999999999998


Q ss_pred             Hhc
Q 029029          169 KRL  171 (200)
Q Consensus       169 ~~~  171 (200)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.7e-33  Score=202.24  Aligned_cols=164  Identities=26%  Similarity=0.510  Sum_probs=143.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|+.|+|||||++++..+.+...+.++.|.++....+..++..+.+++||++|++.+...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999888888899998888788888888999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC-----CCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-----RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      |++++++++.+..|+..+........| ++|+||+|+...     .....++...+++..+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876545566 678999998521     11224567788888899999999999999999999


Q ss_pred             HHHHhccccC
Q 029029          166 EIAKRLPRVQ  175 (200)
Q Consensus       166 ~l~~~~~~~~  175 (200)
                      ++.+.+.+-.
T Consensus       160 ~l~~~l~~~~  169 (182)
T cd04128         160 IVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHhcC
Confidence            9999887533

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.8e-33  Score=197.47  Aligned_cols=161  Identities=49%  Similarity=0.807  Sum_probs=147.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+|+|++|+|||||+++|+++.+.....++.+.++......+++....+++||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999998888777888888887788888888899999999999999888999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |+++++++..+..|+..+.....++.|+++++||.|+.+.+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998887766889999999999998777788888999999999999999999999999999999875


Q ss_pred             c
Q 029029          171 L  171 (200)
Q Consensus       171 ~  171 (200)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            4

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=3e-33  Score=198.19  Aligned_cols=163  Identities=45%  Similarity=0.739  Sum_probs=146.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++....+++||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999888877777888777777778788888899999999999998888999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..+++..+. .++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876667899999999999987777788888899888876 68999999999999999999


Q ss_pred             HHhc
Q 029029          168 AKRL  171 (200)
Q Consensus       168 ~~~~  171 (200)
                      .+.+
T Consensus       162 ~~~l  165 (165)
T cd01864         162 ATEL  165 (165)
T ss_pred             HHhC
Confidence            8764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3e-33  Score=197.58  Aligned_cols=161  Identities=36%  Similarity=0.599  Sum_probs=141.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|++|||||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++++...+..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            37999999999999999999998887776666665 34456677788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|+++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887753 35789999999999977666777778888888889999999999999999999998


Q ss_pred             Hhc
Q 029029          169 KRL  171 (200)
Q Consensus       169 ~~~  171 (200)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            865

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=4.9e-33  Score=197.65  Aligned_cols=165  Identities=43%  Similarity=0.766  Sum_probs=149.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+++|++|+|||||+++++++.+.....++.+.++....+..++....+.+||++|++.+......+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999888877777888888878888888888899999999999988888899999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |+|++++.+++.+..|+..+.....++.|+++|+||.|+.+...+..++.+.++...++.++++||+++.|++++|.+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887667899999999999987667788888889988999999999999999999999999


Q ss_pred             Hhccc
Q 029029          169 KRLPR  173 (200)
Q Consensus       169 ~~~~~  173 (200)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T cd01866         163 KEIYE  167 (168)
T ss_pred             HHHHh
Confidence            87643

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=3.7e-33  Score=197.48  Aligned_cols=162  Identities=36%  Similarity=0.618  Sum_probs=142.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|.+|+|||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999998887777777776544 35667778889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ||.+++.+++.+..|+..+... ...+.|+++|+||+|+.+...+..++...+++..+++++++||++|.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999888764 346799999999999987666777778888888899999999999999999999999


Q ss_pred             Hhcc
Q 029029          169 KRLP  172 (200)
Q Consensus       169 ~~~~  172 (200)
                      +++.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-34  Score=189.23  Aligned_cols=166  Identities=43%  Similarity=0.713  Sum_probs=157.3

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ...-+|++++|+.|+|||.|++++....+....+.++|+++.+..+.+.++.+++++|||+|+++++.....|++++.+.
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA   85 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA   85 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      ++|||++++++|+.+..|+...+....+++-+++++||.|+.+.+++...++..++++..+.+.++||++|+|+++.|-.
T Consensus        86 lLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~  165 (214)
T KOG0086|consen   86 LLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  165 (214)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence            99999999999999999999999988889999999999999999999999999999999999999999999999999987


Q ss_pred             HHHhcc
Q 029029          167 IAKRLP  172 (200)
Q Consensus       167 l~~~~~  172 (200)
                      ..+.|.
T Consensus       166 c~~tIl  171 (214)
T KOG0086|consen  166 CARTIL  171 (214)
T ss_pred             HHHHHH
Confidence            666554

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=4.1e-33  Score=201.30  Aligned_cols=178  Identities=29%  Similarity=0.531  Sum_probs=148.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||+|++.+...+..++..+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999988877777776655543 34444 6788999999999999998898899999999999


Q ss_pred             EeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC----CCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHH
Q 029029           90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA----RKVTAEEAQAYAQENGL-FFMETSAKTATNVNDI  163 (200)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  163 (200)
                      ||++++++|+.+. .|+..+... .++.|+++|+||.|+...    +.+..++..+++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 588877654 367899999999998653    24567788889989988 8999999999999999


Q ss_pred             HHHHHHhccccCCCCCCCCceeccCCCCCCCCCCCC
Q 029029          164 FYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC  199 (200)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  199 (200)
                      |+.+.+.+.......         .+...+.+..||
T Consensus       159 f~~l~~~~~~~~~~~---------~~~~~~~~~~c~  185 (187)
T cd04132         159 FDTAIEEALKKEGKA---------IFKKKKKKRKCV  185 (187)
T ss_pred             HHHHHHHHHhhhhhh---------hhccCCCCcccc
Confidence            999999988765544         345566666664

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=202.01  Aligned_cols=167  Identities=41%  Similarity=0.753  Sum_probs=151.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..++..+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999988887777788888887778888888899999999999999888889999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|||+++++++..+..|+..+........|+++++||+|+.+.+.+..++..++++.++++++++||+++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988877656789999999999998777788888999999999999999999999999999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      ++.+...
T Consensus       164 ~~~~~~~  170 (210)
T PLN03108        164 AAKIYKK  170 (210)
T ss_pred             HHHHHHH
Confidence            9888764

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=7.5e-33  Score=204.29  Aligned_cols=164  Identities=32%  Similarity=0.552  Sum_probs=146.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|.+|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++.+..++..++.++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67899999999999999999999989888888899998888877777788899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|||++++.++..+..|+..+... ..+.|+++|+||+|+.+. ....+.+ .+++..+++|+++||++|.|++++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            999999999999999999999876 367999999999998643 3444444 6777788999999999999999999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      ++.+.+.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9998765

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=7.9e-33  Score=195.53  Aligned_cols=163  Identities=53%  Similarity=0.881  Sum_probs=148.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|||||||++++++..+.....++.+.++....+..++....+.+||+||++.+......++..+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988887777788887777777888888889999999999999889999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |++++.+++.+..|+..+.....+++|+++++||+|+...+....+.+..+++..+++++++||++|.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999899999888766789999999999987767778888888998899999999999999999999999998


Q ss_pred             ccc
Q 029029          171 LPR  173 (200)
Q Consensus       171 ~~~  173 (200)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=8.3e-33  Score=197.61  Aligned_cols=159  Identities=27%  Similarity=0.481  Sum_probs=138.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+++|||+|++.+...+..++.++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999998888788888876553 45667788899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEecCCC
Q 029029           91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMETSAKT  156 (200)
Q Consensus        91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (200)
                      |++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.            +.+..+++.++++..+ +.|+++||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 5888887653 57899999999998653            4566778888888877 6899999999


Q ss_pred             CCCHHHHHHHHHHhc
Q 029029          157 ATNVNDIFYEIAKRL  171 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~  171 (200)
                      |.|++++|+.+++..
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=8.3e-33  Score=195.17  Aligned_cols=159  Identities=38%  Similarity=0.658  Sum_probs=143.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +||+++|++|+|||||++++.++.+...+.++.+.++......+.  +..+.+++||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999888877778888888777777776  778899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |||+++++++..+..|+..+... ..++|+++|+||.|+.....+..+++..+++..+++++++||++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999988764 35799999999999987777788888999999999999999999999999999997


Q ss_pred             Hh
Q 029029          169 KR  170 (200)
Q Consensus       169 ~~  170 (200)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=2.7e-32  Score=200.63  Aligned_cols=171  Identities=40%  Similarity=0.656  Sum_probs=146.6

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ......+||+|+|++|+|||||+++|+++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            4446689999999999999999999997765 456778887777777778888899999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           85 AAIIVYDITNQASFERAKK-WVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      ++|+|||.+++++|..+.. |...+.... ..+.|+++|+||.|+.....+..++...++..++++|+++||+++.|+++
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999865 555555432 34678999999999987667777888888888999999999999999999


Q ss_pred             HHHHHHHhccccCC
Q 029029          163 IFYEIAKRLPRVQP  176 (200)
Q Consensus       163 ~~~~l~~~~~~~~~  176 (200)
                      +|++|.+.+.+...
T Consensus       168 l~~~l~~~~~~~~~  181 (211)
T PLN03118        168 CFEELALKIMEVPS  181 (211)
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999977643

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-34  Score=188.43  Aligned_cols=167  Identities=42%  Similarity=0.722  Sum_probs=156.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ...-+||+++|+.|+|||.|++++..+.+++-...++|+++..++..+++..+++++|||+|+++++...++|++.++++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|||++-..+|+-+.+|+.++..+....+--|+|+||+|+.+.++++....+++++.....|.++||++..|++.+|..
T Consensus        84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~  163 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD  163 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence            99999999899999999999999987778888999999999998899999999999998888999999999999999998


Q ss_pred             HHHhccc
Q 029029          167 IAKRLPR  173 (200)
Q Consensus       167 l~~~~~~  173 (200)
                      +.-++..
T Consensus       164 ~a~rli~  170 (213)
T KOG0095|consen  164 LACRLIS  170 (213)
T ss_pred             HHHHHHH
Confidence            8766544

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.5e-32  Score=194.18  Aligned_cols=161  Identities=38%  Similarity=0.612  Sum_probs=140.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|.+|+|||||+++++.+.+...+.++.+ ......+.+++....+++|||+|++++...+..++.++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999998888776666654 44556677788888999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887753 36899999999999976666677777888888889999999999999999999998


Q ss_pred             Hhc
Q 029029          169 KRL  171 (200)
Q Consensus       169 ~~~  171 (200)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            865

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.4e-32  Score=194.86  Aligned_cols=160  Identities=34%  Similarity=0.625  Sum_probs=140.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|||||||+++++.+.+...+.++.+.+........++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887778888888877777777888899999999999998888889999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |+++++++..+..|+..+..... ++|+++|+||+|+.+ +.... ....+++..+++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999988743 899999999999863 23333 3456667778899999999999999999999998


Q ss_pred             ccc
Q 029029          171 LPR  173 (200)
Q Consensus       171 ~~~  173 (200)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.4e-32  Score=195.52  Aligned_cols=162  Identities=32%  Similarity=0.597  Sum_probs=142.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|.+|||||||++++..+.+...+.++.+.++.......++....+++|||||++++...+..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888999888877788888888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCC--CCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARK--VTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      .+++++++.+..|+..+..... ...|+++|+||+|+.+...  ...+++..+++.++.+++++||++|.|++++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998866533 3568999999999865433  345567778888889999999999999999999999


Q ss_pred             Hhccc
Q 029029          169 KRLPR  173 (200)
Q Consensus       169 ~~~~~  173 (200)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            87754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2.1e-32  Score=192.90  Aligned_cols=161  Identities=43%  Similarity=0.775  Sum_probs=145.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      .||+++|++|||||||+++++++.+.....++.+.++....+..++....+++||+||++.+...+..++..+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999988887777788888888888888888889999999999999988999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |++++++++.+..|+..+......+.|+++++||+|+.+.+....++...+++..+++++++||+++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877654579999999999997666778888888888889999999999999999999999875


Q ss_pred             c
Q 029029          171 L  171 (200)
Q Consensus       171 ~  171 (200)
                      +
T Consensus       161 l  161 (161)
T cd01861         161 L  161 (161)
T ss_pred             C
Confidence            3

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.6e-34  Score=190.14  Aligned_cols=170  Identities=42%  Similarity=0.736  Sum_probs=158.5

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .+...+||+++|..-+|||||+-++..+.+....-.+....+......+++....+.+|||+|+++|..+.+.|++++|+
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence            34668999999999999999999999999988777787778888888898999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +++|||++++++|..+..|..+++......+-+++|+||+|+.+++++.-+++..++..-+..|+++||+++.||.++|+
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe  168 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE  168 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence            99999999999999999999999998777888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccC
Q 029029          166 EIAKRLPRVQ  175 (200)
Q Consensus       166 ~l~~~~~~~~  175 (200)
                      .|..+..+..
T Consensus       169 ~Lt~~MiE~~  178 (218)
T KOG0088|consen  169 SLTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHHh
Confidence            9988887764

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.4e-32  Score=192.22  Aligned_cols=162  Identities=70%  Similarity=1.063  Sum_probs=147.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|++|+|||||+++|+++.+.....++.+..+......+++....+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999998888776778888777778888888999999999999998888888899999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      +|+++++++.....|+..+........|+++++||+|+........++...++...+++++++||++|.|++++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988876678999999999998766677888888888888999999999999999999999998


Q ss_pred             hc
Q 029029          170 RL  171 (200)
Q Consensus       170 ~~  171 (200)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            76

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.5e-32  Score=193.52  Aligned_cols=159  Identities=35%  Similarity=0.483  Sum_probs=137.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++++++.+...+.++.+..+ ......+...+.+.+|||+|++++...+..++..+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999998888766666665433 445556777889999999999999988888999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |++++++++.+..|+..+....   .++.|+++|+||+|+.+.+.+..++...++..+++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999888776642   2678999999999997766777777888888889999999999999999999999


Q ss_pred             HHh
Q 029029          168 AKR  170 (200)
Q Consensus       168 ~~~  170 (200)
                      .+.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.3e-32  Score=199.58  Aligned_cols=162  Identities=26%  Similarity=0.486  Sum_probs=140.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+|+|+.|+|||||++++..+.++..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..++..++.++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            479999999999999999999998888888888876553 5667788999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCC
Q 029029           90 YDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAK  155 (200)
Q Consensus        90 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (200)
                      ||++++++|+.+ ..|...+... .++.|+++|+||+|+.+.            ..+..++...+++..++ +|+||||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            999999999998 5677666554 478999999999999652            13677889999999995 89999999


Q ss_pred             CCCC-HHHHHHHHHHhccc
Q 029029          156 TATN-VNDIFYEIAKRLPR  173 (200)
Q Consensus       156 ~~~~-i~~~~~~l~~~~~~  173 (200)
                      ++.+ |+++|+..+.....
T Consensus       159 ~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         159 SSERSVRDVFHVATVASLG  177 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHh
Confidence            9985 99999998886554

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=4.2e-32  Score=193.16  Aligned_cols=164  Identities=40%  Similarity=0.655  Sum_probs=144.4

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+++|++|+|||||+++++++.+.....++.+.++....+..++..+.+++||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34579999999999999999999998888777778888777777788889999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVN  161 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  161 (200)
                      ++|||++++++++.+..|+..+....    ..+.|+++|+||.|+. .+....++++++++.++. +++++||++|.|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999998776642    2568999999999986 456677888999888874 79999999999999


Q ss_pred             HHHHHHHHhc
Q 029029          162 DIFYEIAKRL  171 (200)
Q Consensus       162 ~~~~~l~~~~  171 (200)
                      ++|+++++.+
T Consensus       161 ~~~~~~~~~~  170 (170)
T cd04116         161 AAFEEAVRRV  170 (170)
T ss_pred             HHHHHHHhhC
Confidence            9999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3.1e-32  Score=193.89  Aligned_cols=162  Identities=38%  Similarity=0.667  Sum_probs=145.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCcEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAII   88 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   88 (200)
                      .+||+++|++|+|||||+++++.+.+...+.++.+.++.......++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999888877778888888877888888889999999999998876 567888999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC---CCCHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT---ATNVNDIF  164 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  164 (200)
                      |||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..++...+++..+++|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887753 36799999999999988778888888999999999999999999   89999999


Q ss_pred             HHHHHhc
Q 029029          165 YEIAKRL  171 (200)
Q Consensus       165 ~~l~~~~  171 (200)
                      .++++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998866

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=4.4e-32  Score=191.50  Aligned_cols=160  Identities=31%  Similarity=0.531  Sum_probs=139.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|.+|+|||||+++++.+.+.+...++.+.+........++..+.+.+|||+|++.+...+..++..+|++|+|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988887777777776777777777888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |.+++.++..+..|+..+... .++.|+++|+||+|+...   ...+...+++..+++++++||++|.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999998765 357899999999998432   2344556667778999999999999999999999988


Q ss_pred             cccc
Q 029029          171 LPRV  174 (200)
Q Consensus       171 ~~~~  174 (200)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            7665

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4.5e-32  Score=196.20  Aligned_cols=163  Identities=31%  Similarity=0.546  Sum_probs=138.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      .||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++....+++||++|++.+..++..++..+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            4899999999999999999999888777777776554 345566778899999999999999989989999999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcC-CcEEEecCCC
Q 029029           91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENG-LFFMETSAKT  156 (200)
Q Consensus        91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (200)
                      |++++++|+.+. .|+..+... .++.|+++|+||+|+.+..            .+..++...+++..+ ++|+++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999885 688888765 3579999999999996543            245566777777776 6899999999


Q ss_pred             CCCHHHHHHHHHHhccccC
Q 029029          157 ATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~  175 (200)
                      |.|++++|.++.+.+....
T Consensus       159 ~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         159 NRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCCHHHHHHHHHHHHhccc
Confidence            9999999999999887443

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=3.3e-32  Score=192.51  Aligned_cols=162  Identities=35%  Similarity=0.616  Sum_probs=140.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+|+|++|||||||+++++++.+...+.++.+ +........++..+.+.+|||||++++...+..++..+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999998887766666554 334556667788899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+...+....+.+..+++..+++++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988876643 357899999999999776667777888888888999999999999999999999998


Q ss_pred             hccc
Q 029029          170 RLPR  173 (200)
Q Consensus       170 ~~~~  173 (200)
                      .+..
T Consensus       160 ~~~~  163 (164)
T smart00173      160 EIRK  163 (164)
T ss_pred             HHhh
Confidence            7653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=5.5e-32  Score=191.28  Aligned_cols=161  Identities=32%  Similarity=0.540  Sum_probs=139.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      .+||+++|++|+|||||+++++++.+...+.++.+..+ .....+++....+.+|||||++++...+..++.++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            58999999999999999999998877666666655333 44456778889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      +|++++.+++.+..|+..+... ...+.|+++++||+|+...+.+..++...+++..+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999888764 346789999999999977666777778888888899999999999999999999998


Q ss_pred             Hhc
Q 029029          169 KRL  171 (200)
Q Consensus       169 ~~~  171 (200)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            865

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=5.1e-32  Score=193.37  Aligned_cols=159  Identities=31%  Similarity=0.523  Sum_probs=138.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      .+||+++|.+|||||||+.+++.+.+...+.++.+. ........++..+.+++|||+|++.+...+..++.++|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            379999999999999999999988888777777753 3345566788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCC
Q 029029           90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAK  155 (200)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (200)
                      ||++++++|+.+. .|+..+... .++.|+++|+||+|+.+.            +.+..+++..+++.++. +++++||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999985 688877665 357999999999999542            24678888999998885 89999999


Q ss_pred             CCCCHHHHHHHHHHh
Q 029029          156 TATNVNDIFYEIAKR  170 (200)
Q Consensus       156 ~~~~i~~~~~~l~~~  170 (200)
                      +|.|++++|+.+.+.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=6e-32  Score=196.49  Aligned_cols=169  Identities=22%  Similarity=0.272  Sum_probs=139.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhcC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYRG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~   82 (200)
                      +||+|+|.+|+|||||++++.++.+...+.++.+.+.....+..++..+.+++|||||...+...        ....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999988887777777766666666777888899999999997543211        2234689


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCCC
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTAT  158 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  158 (200)
                      +|++|+|||++++++++.+..|++.+....   ..++|+++|+||+|+.+.+....++...++. .++++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887653   4679999999999997766666776776654 568999999999999


Q ss_pred             CHHHHHHHHHHhccccCCCCC
Q 029029          159 NVNDIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~~~~  179 (200)
                      |++++|+.+++.+..+.+...
T Consensus       161 ~v~~lf~~i~~~~~~~~~~~~  181 (198)
T cd04142         161 HILLLFKELLISATTRGRSTH  181 (198)
T ss_pred             CHHHHHHHHHHHhhccCCCcc
Confidence            999999999998887665533

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=6.6e-32  Score=190.29  Aligned_cols=160  Identities=31%  Similarity=0.580  Sum_probs=138.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|++|+|||||+++|+++.+...+.++.+..+ .....+++....+.+||++|++.+..++..++.++|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999998887777767765443 45566778888899999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +.....++..+++..+++++++||++|.|++++|+++.
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999998988887653 35789999999999865 45566778888888899999999999999999999998


Q ss_pred             Hhc
Q 029029          169 KRL  171 (200)
Q Consensus       169 ~~~  171 (200)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.8e-31  Score=188.74  Aligned_cols=160  Identities=35%  Similarity=0.568  Sum_probs=140.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC--cccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      +||+++|++|||||||++++..+  .+...+.++.|.++......++ +....+.+||+||++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999854  5667778888877766666664 56799999999999998888899999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|+|.+++++++.+..|++.+.... .+.|+++|+||+|+.+..++.......+....+++++++||+++.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999888764 578999999999997766677767777777888999999999999999999999


Q ss_pred             HHhc
Q 029029          168 AKRL  171 (200)
Q Consensus       168 ~~~~  171 (200)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.5e-31  Score=194.23  Aligned_cols=156  Identities=31%  Similarity=0.584  Sum_probs=139.4

Q ss_pred             ECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH
Q 029029           16 LGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ   95 (200)
Q Consensus        16 vG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   95 (200)
                      +|..|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++++..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888878888999888888888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029           96 ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus        96 ~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      .++..+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..+++..++.|++|||++|.|++++|.+|++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998763 5799999999999864 3344443 467778899999999999999999999999988664

Ran is involved in the active transport of proteins through nuclear pores.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=4.2e-31  Score=186.20  Aligned_cols=161  Identities=47%  Similarity=0.805  Sum_probs=142.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++|+++.+.....++.+...........+....+.+||+||++.+...+..++.++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999988776655566656666666777778889999999999988888999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |+++++++..+..|++.+......++|+++++||+|+.....+..++...+++..+++++++|++++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888765689999999999998766777788888888889999999999999999999999886


Q ss_pred             c
Q 029029          171 L  171 (200)
Q Consensus       171 ~  171 (200)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=9.5e-31  Score=185.91  Aligned_cols=165  Identities=39%  Similarity=0.729  Sum_probs=145.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....++|+++|++|+|||||++++..+.+.....++.+.+.......+.+....+.+||++|+..+...+..++..+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            35579999999999999999999998777766777777777777788888888999999999998888888999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      ++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+++..+....+.+....+++++||++|.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999999888766567999999999999776677777677777777788999999999999999999


Q ss_pred             HHHhc
Q 029029          167 IAKRL  171 (200)
Q Consensus       167 l~~~~  171 (200)
                      +.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=5.3e-31  Score=197.16  Aligned_cols=163  Identities=25%  Similarity=0.414  Sum_probs=139.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|.+|+|||||+++++++.+...+.++.+ ++....+.+++..+.+.+|||+|++.+......++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999998888777777765 455667778888899999999999988888888889999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHh---------CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-cCCcEEEecCCCCCCH
Q 029029           91 DITNQASFERAKKWVQELQAQ---------GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNV  160 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~---------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  160 (200)
                      |++++++|+.+..|++.+...         ...++|+++|+||+|+.+.+.+..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888653         235789999999999976666777777777654 4678999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 029029          161 NDIFYEIAKRLPRV  174 (200)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (200)
                      +++|++|.+.+...
T Consensus       160 ~elf~~L~~~~~~p  173 (247)
T cd04143         160 DEMFRALFSLAKLP  173 (247)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999976443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=4.3e-31  Score=191.38  Aligned_cols=158  Identities=26%  Similarity=0.409  Sum_probs=128.6

Q ss_pred             ceeEEEECCCCCCHHHHHH-HHHhCc-----ccCcccCccee-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 029029           10 NAKLVLLGDVGAGKSSLVL-RFVKGQ-----FIEFQESTIGA-AFFSQT--------LAVNDATVKFEIWDTAGQERYHS   74 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   74 (200)
                      .+||+++|..|+|||||+. ++.++.     +...+.|+.+. +.+...        ..+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5799999999999999995 565433     33445666642 222222        25678899999999999975  2


Q ss_pred             chhhhhcCCcEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccC-------------------CCCCC
Q 029029           75 LAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD-------------------ARKVT  134 (200)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~-------------------~~~~~  134 (200)
                      ....+++++|++|+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4456889999999999999999999996 6988887653 5789999999999864                   36778


Q ss_pred             HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029          135 AEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      .++++.+++.++++|++|||++|.|++++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=5.6e-31  Score=185.08  Aligned_cols=154  Identities=24%  Similarity=0.448  Sum_probs=129.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|+.|+|||||+++++.+.+...+.++ +..+ ...+.+++..+.+++||++|++.     ..++..+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988776655444 2233 46677888889999999999975     34678899999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccC--CCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLD--ARKVTAEEAQAYAQEN-GLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |++++.+|+.+..|+..+..... .+.|+++|+||.|+..  .+.+..++++++++.. ++.|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999877643 6789999999999853  4667788888888776 589999999999999999999


Q ss_pred             HHHhc
Q 029029          167 IAKRL  171 (200)
Q Consensus       167 l~~~~  171 (200)
                      +++++
T Consensus       154 ~~~~~  158 (158)
T cd04103         154 AAQKI  158 (158)
T ss_pred             HHhhC
Confidence            98753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=1.2e-30  Score=184.08  Aligned_cols=160  Identities=44%  Similarity=0.752  Sum_probs=142.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988877777788888877777777888899999999999999888889999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      |.+++.+++.+..|+..+.... ..+.|+++++||+|+.. .....++...+++..+++++++||++|.|++++++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999988999887763 46899999999999873 455677888888889999999999999999999999987


Q ss_pred             hc
Q 029029          170 RL  171 (200)
Q Consensus       170 ~~  171 (200)
                      .+
T Consensus       160 ~~  161 (161)
T cd01863         160 KI  161 (161)
T ss_pred             hC
Confidence            63

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=8.8e-31  Score=186.06  Aligned_cols=162  Identities=33%  Similarity=0.587  Sum_probs=141.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|++|+|||||++++.++.+...+.++.+.. .......++..+.+++||+||++.+..++..++..++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            4799999999999999999999888877666766543 356667778889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      ||.+++++++.+..|...+... ...+.|+++++||.|+.+.+....++...+++.++ ++++++||+++.|++++|.++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999998888764 24679999999999998777777777888888887 789999999999999999999


Q ss_pred             HHhcc
Q 029029          168 AKRLP  172 (200)
Q Consensus       168 ~~~~~  172 (200)
                      +.++.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            88653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1e-30  Score=186.12  Aligned_cols=164  Identities=42%  Similarity=0.724  Sum_probs=143.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|||||||++++.++.+.....++.+.++.......++....+.+||+||++.+...+..+++.+|++|+++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988877777777777777777788888899999999999999889999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~  165 (200)
                      |++++.+++.+..|...+....    ..++|+++|+||+|+........++...+++..+ ++++++||++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            9999999988888887765542    2379999999999997656667788888888887 7899999999999999999


Q ss_pred             HHHHhcccc
Q 029029          166 EIAKRLPRV  174 (200)
Q Consensus       166 ~l~~~~~~~  174 (200)
                      ++.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999887665

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=5.8e-31  Score=187.92  Aligned_cols=158  Identities=34%  Similarity=0.559  Sum_probs=136.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDI   92 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   92 (200)
                      |+|+|++|+|||||+++++++.+...+.++.+.. ....+..++..+.+++|||||++.+...+..++.++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            5899999999999999999988877776666544 344566788889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcCC-cEEEecCCCCC
Q 029029           93 TNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENGL-FFMETSAKTAT  158 (200)
Q Consensus        93 ~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (200)
                      +++++|+.+. .|+..+.... ++.|+++|+||+|+....            .+..+++..+++..+. +++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 6888887753 689999999999986532            3667778889999886 89999999999


Q ss_pred             CHHHHHHHHHHhcc
Q 029029          159 NVNDIFYEIAKRLP  172 (200)
Q Consensus       159 ~i~~~~~~l~~~~~  172 (200)
                      |++++|+.+.+.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=5.1e-31  Score=186.72  Aligned_cols=160  Identities=33%  Similarity=0.536  Sum_probs=135.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCcEEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~   90 (200)
                      ||+++|++|+|||||+++++.+.+...+.++.+.. ......+++..+.+++||+||++. .......+++.+|++|+|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999877766665655433 345567788889999999999885 3445677889999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEI  167 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l  167 (200)
                      |++++++++.+..|+..+....  ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||+++. |++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887753  3579999999999997767778888889998899999999999995 999999999


Q ss_pred             HHhcc
Q 029029          168 AKRLP  172 (200)
Q Consensus       168 ~~~~~  172 (200)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=5e-31  Score=187.45  Aligned_cols=163  Identities=20%  Similarity=0.229  Sum_probs=139.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      +-+||+++|.+|+|||||+++++++.+. ..+.++.+..+....+..++....+.+||++|++.+...+..++.++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4689999999999999999999988887 778888887777677777888889999999999999888899999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  166 (200)
                      +|+|.+++.+++.+..|+..+...  .++|+++|+||.|+.+.......+...+++..++ .++++||+++.|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999988888766432  4789999999999865544434445677777777 4799999999999999999


Q ss_pred             HHHhccc
Q 029029          167 IAKRLPR  173 (200)
Q Consensus       167 l~~~~~~  173 (200)
                      +.+.+..
T Consensus       161 l~~~~~~  167 (169)
T cd01892         161 LATAAQY  167 (169)
T ss_pred             HHHHhhC
Confidence            9998753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=100.00  E-value=1.1e-30  Score=183.04  Aligned_cols=159  Identities=55%  Similarity=0.906  Sum_probs=144.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||++++.++.+.....++.+.++.......++....+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988888777788888888888888888899999999999988888999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      |+++++++..+..|+..+........|+++++||+|+........++...++..++++++++||+++.|+++++++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999998876578999999999999756667788899999888999999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=7.5e-31  Score=173.11  Aligned_cols=169  Identities=44%  Similarity=0.745  Sum_probs=159.2

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +...-+|-+++|.-|+|||.|++.+....+...-..++|+.+....+.+.+..+++++|||.|+++++....++++++.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            44677899999999999999999999888888788899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      .++|||++.+.+++.+..|+..-+....++..+++++||.|+...+.+..+++..+++.+++.|.++||++|.++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhcccc
Q 029029          166 EIAKRLPRV  174 (200)
Q Consensus       166 ~l~~~~~~~  174 (200)
                      ...+++...
T Consensus       167 e~akkiyqn  175 (215)
T KOG0097|consen  167 ETAKKIYQN  175 (215)
T ss_pred             HHHHHHHHh
Confidence            888777653

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=3.5e-33  Score=182.25  Aligned_cols=167  Identities=40%  Similarity=0.694  Sum_probs=151.2

Q ss_pred             EECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC
Q 029029           15 LLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT   93 (200)
Q Consensus        15 vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   93 (200)
                      ++|.+++|||.|+-++-.+.+ .....++.|+++..+.+.+++..+++++|||.|+++++.....|++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999877765554 3345678889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029           94 NQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus        94 ~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      +..+|++.+.|+.++..+....+.+.+++||+|+..++.+..++.+++++.+++||.++||++|.|++..|..|.+.+..
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            99999999999999999887888899999999999888999999999999999999999999999999999999999887


Q ss_pred             cCCCCCCC
Q 029029          174 VQPAPNPS  181 (200)
Q Consensus       174 ~~~~~~~~  181 (200)
                      ..-...|.
T Consensus       162 ~~~~~~~~  169 (192)
T KOG0083|consen  162 LKMGAPPE  169 (192)
T ss_pred             hccCCCCC
Confidence            65544443

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=1.9e-30  Score=191.75  Aligned_cols=163  Identities=28%  Similarity=0.400  Sum_probs=138.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc-CCcEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR-GAAAAII   88 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   88 (200)
                      +||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|++  ......++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999877775 5555665556677778888889999999999998  223344566 8999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887753 3579999999999998777777787888888889999999999999999999999


Q ss_pred             HHhccccC
Q 029029          168 AKRLPRVQ  175 (200)
Q Consensus       168 ~~~~~~~~  175 (200)
                      ++.+....
T Consensus       159 ~~~~~~~~  166 (221)
T cd04148         159 VRQIRLRR  166 (221)
T ss_pred             HHHHHhhh
Confidence            99987543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=3.2e-30  Score=184.04  Aligned_cols=157  Identities=29%  Similarity=0.523  Sum_probs=135.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +|++++|++|+|||||++++.++.+...+.++. .+.......+++..+.+++||+||++.+...+..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999888877776665 4455566777888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEEecCCC
Q 029029           91 DITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFMETSAKT  156 (200)
Q Consensus        91 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (200)
                      |.+++++|+.+ ..|+..+... .++.|+++++||+|+..            .+.+..+++..+++..+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999988 4688888754 35789999999999864            345677788899998888 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 029029          157 ATNVNDIFYEIAK  169 (200)
Q Consensus       157 ~~~i~~~~~~l~~  169 (200)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=4.3e-30  Score=183.41  Aligned_cols=159  Identities=32%  Similarity=0.525  Sum_probs=135.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||++++..+.+...+.++.+. .......+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            58999999999999999999988877666666543 33445667888889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCCC
Q 029029           91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAKT  156 (200)
Q Consensus        91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (200)
                      |..++.+|+.+. .|+..+... .++.|+++++||+|+.+.            ..+..+++..+++..+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 687777665 578999999999998543            24667778888888886 799999999


Q ss_pred             CCCHHHHHHHHHHhc
Q 029029          157 ATNVNDIFYEIAKRL  171 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~  171 (200)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-32  Score=182.27  Aligned_cols=171  Identities=35%  Similarity=0.592  Sum_probs=153.4

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC---------CeEEEEEEEeCCCcccccc
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN---------DATVKFEIWDTAGQERYHS   74 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~   74 (200)
                      ++....-+|.+.+|.+|+||||++.+...+.+......+.|+++..+...++         +..+.+++|||+|+++++.
T Consensus         3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS   82 (219)
T KOG0081|consen    3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS   82 (219)
T ss_pred             CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence            3445567899999999999999999999999998888889988877776653         2456799999999999999


Q ss_pred             chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEec
Q 029029           75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                      +...+++.|-+++++||+++..+|-+++.|+..+..+. ..+.-+++++||+|+.+.++++.+.+..++.++++|||++|
T Consensus        83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081|consen   83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence            99999999999999999999999999999999988754 35566899999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHhcccc
Q 029029          154 AKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~  174 (200)
                      |-+|.|+++..+.|.+.+.++
T Consensus       163 A~tg~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKR  183 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHH
Confidence            999999999999999988775

>cd00876 Ras Ras family

Probab=99.97  E-value=1.3e-29  Score=178.21  Aligned_cols=159  Identities=37%  Similarity=0.637  Sum_probs=139.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|++|||||||+++++++.+.....++.+ +........++..+.+++||+||++.+......+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998777666666655 4555666667778899999999999888888899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      .++++++..+..|+..+..... ...|+++++||+|+...+....+++..++...+.+++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999998888877643 689999999999998767778888999998888999999999999999999999876


Q ss_pred             c
Q 029029          171 L  171 (200)
Q Consensus       171 ~  171 (200)
                      +
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            4

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.8e-29  Score=178.33  Aligned_cols=161  Identities=34%  Similarity=0.572  Sum_probs=139.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++++.+.+...+.++.+. ........++..+.+.+||+||+..+...+..+++.+|++++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            58999999999999999999988877666666543 33455667788899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      |++++.++..+..|+..+.... ..++|+++|+||+|+.............+++.++++++++||++|.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887753 357999999999999765556677778888888899999999999999999999998


Q ss_pred             hcc
Q 029029          170 RLP  172 (200)
Q Consensus       170 ~~~  172 (200)
                      ++.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=3.3e-29  Score=180.92  Aligned_cols=165  Identities=33%  Similarity=0.536  Sum_probs=135.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +.||+|+|++|+|||||++++..+.+...+.++....+ ......++....+.+||++|++.+......++..+|+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            46999999999999999999997877766655554333 33556677788899999999988887777788999999999


Q ss_pred             EeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccC----------CCCCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029           90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD----------ARKVTAEEAQAYAQENGL-FFMETSAKTA  157 (200)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (200)
                      ||++++++++.+. .|+..+.... ++.|+++|+||+|+.+          .+.+..++...+++..+. .|+++||++|
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999985 6888887653 5699999999999854          234556778888888885 7999999999


Q ss_pred             CCHHHHHHHHHHhccccCC
Q 029029          158 TNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~~  176 (200)
                      .|++++|+++.+.+....+
T Consensus       159 ~~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         159 EGVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CCHHHHHHHHHHHHhcccC
Confidence            9999999999988765544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=4.4e-29  Score=179.19  Aligned_cols=165  Identities=34%  Similarity=0.525  Sum_probs=140.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      .||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+++||+||++++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998877655555554333 455566777889999999999999888899999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      |.++..+++.+..|+..+.... ..+.|+++++||+|+...+....++...+++..+.+++++||+++.|++++|+++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999988888776643 367899999999999766666777778888888899999999999999999999999


Q ss_pred             hccccCC
Q 029029          170 RLPRVQP  176 (200)
Q Consensus       170 ~~~~~~~  176 (200)
                      .+.....
T Consensus       161 ~~~~~~~  167 (180)
T cd04137         161 EIEKVEN  167 (180)
T ss_pred             HHHHhcC
Confidence            9887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=9.1e-30  Score=180.79  Aligned_cols=155  Identities=23%  Similarity=0.384  Sum_probs=123.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|+|||||+++|..+.+. .+.++.+.++.  ...  ...+.+++|||+|++.++..+..++.++|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999866654 35566665543  222  34688999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|++++.+++++..|+..+... ...++|+++|+||+|+.+.  ...+++......     ....++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            999999999999988877766543 2357899999999998642  455666665432     23468999999999999


Q ss_pred             HHHHHHHH
Q 029029          162 DIFYEIAK  169 (200)
Q Consensus       162 ~~~~~l~~  169 (200)
                      ++|+||.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=7.2e-29  Score=177.23  Aligned_cols=160  Identities=34%  Similarity=0.567  Sum_probs=132.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +.||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            46899999999999999999998888777777765444 34566778888999999999999888888889999999999


Q ss_pred             EeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCC
Q 029029           90 YDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAK  155 (200)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (200)
                      ||++++++++.+. .|+..+... ..+.|+++|+||+|+.+.            ..+...+.+.+++..+. .++++||+
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999998884 687777664 357899999999998542            22345667777777765 79999999


Q ss_pred             CCCCHHHHHHHHHHhc
Q 029029          156 TATNVNDIFYEIAKRL  171 (200)
Q Consensus       156 ~~~~i~~~~~~l~~~~  171 (200)
                      +|.|++++|+++.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=5e-29  Score=181.51  Aligned_cols=161  Identities=27%  Similarity=0.451  Sum_probs=133.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|++|+|||||+++++++.+...+.++.+ ......+.+.+..+.+++||++|+..+...+..++..+|++|+|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999998887766655553 3444556677777899999999999888888889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccC-CCCCCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           92 ITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLD-ARKVTAEEAQAYAQ-ENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ++++.+++.+..|+..+..... .++|+++|+||+|+.. ...+..+...+.+. ..+++++++||++|.|++++|+++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877543 5799999999999865 34455544444443 4567899999999999999999999


Q ss_pred             Hhccc
Q 029029          169 KRLPR  173 (200)
Q Consensus       169 ~~~~~  173 (200)
                      +.+..
T Consensus       160 ~~~~~  164 (198)
T cd04147         160 RQANL  164 (198)
T ss_pred             HHhhc
Confidence            98764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=2.3e-29  Score=178.97  Aligned_cols=157  Identities=21%  Similarity=0.377  Sum_probs=125.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|+++||||||+++|.++.+.. +.++.+....    .++...+.+++||+||++.+...+..++..+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~----~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE----TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE----EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999775543 5566554442    233356789999999999999899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC------CcEEEecCCCCCCHHHHH
Q 029029           92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENG------LFFMETSAKTATNVNDIF  164 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~  164 (200)
                      .+++++++.+..|+..+.... ..+.|+++++||+|+.+  ....+++..++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999988888876542 35689999999999854  356666666654322      257899999999999999


Q ss_pred             HHHHHhccccC
Q 029029          165 YEIAKRLPRVQ  175 (200)
Q Consensus       165 ~~l~~~~~~~~  175 (200)
                      +||.+.+.+..
T Consensus       154 ~~l~~~~~~~~  164 (169)
T cd04158         154 DWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHhhcc
Confidence            99998776554

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=3.9e-30  Score=182.02  Aligned_cols=153  Identities=23%  Similarity=0.339  Sum_probs=125.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      .|+++|++|+|||||++++.++.+...+.++.+...    ..++.....+.+||++|++.++..+..+++++|++|+|+|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999998877777777776542    3345567899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH----HHHHHHHHHcCCcEEEecCCC------CCCHH
Q 029029           92 ITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA----EEAQAYAQENGLFFMETSAKT------ATNVN  161 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~  161 (200)
                      .+++.++...+.|+..+.... .++|+++|+||.|+...+....    ..+..+++..++.++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999888888876543 6899999999999865543221    123445556678899998888      99999


Q ss_pred             HHHHHHHH
Q 029029          162 DIFYEIAK  169 (200)
Q Consensus       162 ~~~~~l~~  169 (200)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=2.4e-29  Score=180.55  Aligned_cols=159  Identities=19%  Similarity=0.348  Sum_probs=124.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|+.+||||||++++..+.+. .+.++.|.+..  .  ++...+.+++||+||++.++..+..++.++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999866664 35566665442  2  2344678999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-----CcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-----LFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  161 (200)
                      +|+|+++++++.....++..+... ...+.|+++++||+|+.+.  ...+++........     +.++++||++|.|++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999998887777766542 2357899999999998653  34444444332222     235689999999999


Q ss_pred             HHHHHHHHhccc
Q 029029          162 DIFYEIAKRLPR  173 (200)
Q Consensus       162 ~~~~~l~~~~~~  173 (200)
                      ++|+||.+.+..
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=6.2e-29  Score=178.87  Aligned_cols=165  Identities=20%  Similarity=0.302  Sum_probs=130.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      +.+||+++|++|||||||++++..+.+... .++.+.+........ ++....+.+|||+|++.+...+..++.++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999997776543 466665555544443 346789999999999999889999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH------cCCcEEEecCCCCCCH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE------NGLFFMETSAKTATNV  160 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i  160 (200)
                      +|+|.+++.++.....|+..+... ...++|+++++||+|+.+.  ...++...+...      .+++++++||++|.|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            999999998898888888777653 2357899999999998542  344444444321      1246889999999999


Q ss_pred             HHHHHHHHHhccccCC
Q 029029          161 NDIFYEIAKRLPRVQP  176 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~~  176 (200)
                      +++|++|.+.+.+..+
T Consensus       159 ~~l~~~l~~~l~~~~~  174 (183)
T cd04152         159 QEGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998865443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=2.5e-28  Score=173.66  Aligned_cols=157  Identities=34%  Similarity=0.603  Sum_probs=130.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++|+++.+.....++.. .........++..+.+++||+||++.+......++..+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998887555555543 334455566788899999999999988888888889999999999


Q ss_pred             eCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCC-----------CCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029           91 DITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDAR-----------KVTAEEAQAYAQENGL-FFMETSAKTA  157 (200)
Q Consensus        91 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (200)
                      |++++.++... ..|+..+.... .+.|+++|+||+|+.+..           .+..++...++..++. +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            99999998876 46777776653 489999999999987554           2346677888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 029029          158 TNVNDIFYEIAK  169 (200)
Q Consensus       158 ~~i~~~~~~l~~  169 (200)
                      .|++++|+++++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=177.92  Aligned_cols=167  Identities=36%  Similarity=0.597  Sum_probs=153.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ...||+++|.+|+|||+|..++..+.+...+.|+++ +.+.+...+++....+.|+||+|++++..+...++.++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999986 6678888888999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      ||+++++.||+.+..+++.+.+.. ...+|+++|+||+|+...+.+..++.+.++..++++|+|+||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            999999999999999999885533 3568999999999999889999999999999999999999999999999999999


Q ss_pred             HHhccccCC
Q 029029          168 AKRLPRVQP  176 (200)
Q Consensus       168 ~~~~~~~~~  176 (200)
                      .+.+...+.
T Consensus       161 ~r~~~~~~~  169 (196)
T KOG0395|consen  161 VREIRLPRE  169 (196)
T ss_pred             HHHHHhhhc
Confidence            998887333

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.2e-28  Score=176.26  Aligned_cols=157  Identities=21%  Similarity=0.365  Sum_probs=122.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|++|||||||++++..+.+. .+.++.+.....  ..  .....+++||+||++.+...+..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            45799999999999999999999766664 355666655432  22  24578999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|++++++++....|+..+... ...+.|+++|+||.|+.+.  .+.+++......     ..+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            999999999999988888777553 2357899999999998643  233333332211     12346789999999999


Q ss_pred             HHHHHHHHhc
Q 029029          162 DIFYEIAKRL  171 (200)
Q Consensus       162 ~~~~~l~~~~  171 (200)
                      ++|+||.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=6.5e-28  Score=177.83  Aligned_cols=167  Identities=30%  Similarity=0.531  Sum_probs=144.5

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      +.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            55667899999999999999999988888888888899998888888878888999999999999998888888999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      ++++|||++++.++..+..|+..+.... .+.|+++++||.|+.+. ....+ ...++...++.++++||++|.|+++.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999887653 57899999999998643 23333 345667788899999999999999999


Q ss_pred             HHHHHhcccc
Q 029029          165 YEIAKRLPRV  174 (200)
Q Consensus       165 ~~l~~~~~~~  174 (200)
                      .+|++.+...
T Consensus       161 ~~ia~~l~~~  170 (215)
T PTZ00132        161 LWLARRLTND  170 (215)
T ss_pred             HHHHHHHhhc
Confidence            9999988653

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.9e-29  Score=177.60  Aligned_cols=152  Identities=20%  Similarity=0.376  Sum_probs=117.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|.+|||||||++++..+.+.. +.++.+....  .+.  ...+.+.+||+||++++...+..+++++|++|+|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            589999999999999999998776653 5666665442  222  34688999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      |.+++.+++....|+..+... .....|+++++||+|+.+.  ...+++.....     ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877766543 2346899999999998542  22333222221     123357799999999999999


Q ss_pred             HHHHH
Q 029029          165 YEIAK  169 (200)
Q Consensus       165 ~~l~~  169 (200)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99865

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=1.5e-28  Score=175.44  Aligned_cols=157  Identities=22%  Similarity=0.324  Sum_probs=123.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .....++|+++|++|+|||||+++|.+.. ...+.++.+...  .....+  .+.+.+||+||++.++..+..++..+|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~-~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGED-IDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            34567999999999999999999999663 344556655332  333333  5789999999999888888899999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATN  159 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  159 (200)
                      +++|+|.+++.++.....|+..+... ...+.|+++|+||+|+.+.  ...+++..+.+     ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            99999999999999888888776543 2367999999999998653  24455555543     2356899999999999


Q ss_pred             HHHHHHHHHH
Q 029029          160 VNDIFYEIAK  169 (200)
Q Consensus       160 i~~~~~~l~~  169 (200)
                      ++++|+++.+
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2.2e-28  Score=175.81  Aligned_cols=159  Identities=21%  Similarity=0.368  Sum_probs=122.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|++|||||||++++..+.+.. +.++.+..+.  .  ++...+.+++||++|++.++..+..++.++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998676654 4566665443  2  2235688999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|++++++++....++..+... ...+.|+++|+||.|+.+.  ...+++......     ..+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999888777766443 2356899999999998542  233333222211     12346799999999999


Q ss_pred             HHHHHHHHhccc
Q 029029          162 DIFYEIAKRLPR  173 (200)
Q Consensus       162 ~~~~~l~~~~~~  173 (200)
                      ++|+||.+.+.+
T Consensus       168 e~~~~l~~~i~~  179 (182)
T PTZ00133        168 EGLDWLSANIKK  179 (182)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=1.1e-27  Score=169.74  Aligned_cols=160  Identities=29%  Similarity=0.420  Sum_probs=123.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|.+|+|||||+++|.++.+...+..+.  ........+.+..+.+.+|||||.+.+...+..++..+|++++|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999888765433221  122333445667789999999999887777777889999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHHHc-C-CcEEEecCCCCCCHHHHHH
Q 029029           91 DITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQEN-G-LFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        91 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~~~  165 (200)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....  .+.+..++... + .+++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 6878777653 579999999999997654321  23333333333 2 3799999999999999999


Q ss_pred             HHHHhccc
Q 029029          166 EIAKRLPR  173 (200)
Q Consensus       166 ~l~~~~~~  173 (200)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=8.8e-28  Score=171.59  Aligned_cols=154  Identities=25%  Similarity=0.374  Sum_probs=120.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+++|++|+|||||++++..+.+.. ..++.+.++..  ..  .....+.+||+||++.+...+..++..+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IV--YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EE--ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999777654 45666554432  22  235789999999999998899999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVND  162 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      |+|.++++++.....++..+... ...+.|+++++||+|+.+.  .+.++..+..     +..+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999998888887777766543 2357899999999998652  3343332222     22445789999999999999


Q ss_pred             HHHHHHH
Q 029029          163 IFYEIAK  169 (200)
Q Consensus       163 ~~~~l~~  169 (200)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=1.8e-28  Score=173.47  Aligned_cols=167  Identities=32%  Similarity=0.538  Sum_probs=149.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ...+|++|||...+|||+|+-.+..+.++..+.|+.- +.+.....++ +..+.+.+|||+|+++|..++...+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            4578999999999999999999999999999998884 6667778884 9999999999999999999888889999999


Q ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEe
Q 029029           87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMET  152 (200)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  152 (200)
                      +++|++.++++++++ .+|+.++..+. ++.|+++|++|.||.++            ..+..++...+++..| ..|+||
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999997 79999998884 89999999999999743            2567788999999999 579999


Q ss_pred             cCCCCCCHHHHHHHHHHhccccCC
Q 029029          153 SAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      ||++..|++++|+..++......+
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999998887776654

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=7.7e-28  Score=169.70  Aligned_cols=152  Identities=19%  Similarity=0.288  Sum_probs=117.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +|+++|++|||||||+++|.++.. ...+.++.+.....  .  ......+++|||||++.+...+..++..+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999997653 44566676644322  2  234678999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVND  162 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  162 (200)
                      |++++.++.....|+..+....   ..++|+++|+||+|+.+..  ...+......     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888887775532   2579999999999986532  2222222221     1234589999999999999


Q ss_pred             HHHHHHH
Q 029029          163 IFYEIAK  169 (200)
Q Consensus       163 ~~~~l~~  169 (200)
                      +|+||.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=2.3e-27  Score=172.30  Aligned_cols=147  Identities=22%  Similarity=0.383  Sum_probs=124.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-----CeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-----DATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +||+++|..|+|||||++++.++.+...+.++.|.++....+.++     +..+.+++||++|++.+..++..++.++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888877766666653     467899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-------------------CCCCeEEEEEeCcCccCCCCCCHH----HHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQG-------------------NPNMVMALAGNKADLLDARKVTAE----EAQAYA  142 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~~~ivv~nK~D~~~~~~~~~~----~~~~~~  142 (200)
                      +|+|||++++.+++.+..|+..+....                   ..+.|+++|+||.|+.+.+.+...    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987631                   247899999999999766544443    244567


Q ss_pred             HHcCCcEEEecCCCC
Q 029029          143 QENGLFFMETSAKTA  157 (200)
Q Consensus       143 ~~~~~~~~~~Sa~~~  157 (200)
                      +..+++.++.++.++
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            788999888887754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=3.5e-28  Score=172.55  Aligned_cols=151  Identities=19%  Similarity=0.219  Sum_probs=119.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      +|+++|++|||||||++++.++ +...+.++.|...  ..+.  .....+++||+||++.++..+..++.++|++|+|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLR--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEE--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            5899999999999999999955 6666677776543  2333  345789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHH------HHHHHHcC--CcEEEecCCCC-----
Q 029029           92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEA------QAYAQENG--LFFMETSAKTA-----  157 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~Sa~~~-----  157 (200)
                      ++++.+++.+..|+..+.... ..++|+++|+||.|+.+..  ...++      ..+++..+  +.++++||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            999999999999998887643 2578999999999986543  22222      22222222  46788999998     


Q ss_pred             -CCHHHHHHHHHH
Q 029029          158 -TNVNDIFYEIAK  169 (200)
Q Consensus       158 -~~i~~~~~~l~~  169 (200)
                       .|+++.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=3.3e-27  Score=168.60  Aligned_cols=159  Identities=26%  Similarity=0.410  Sum_probs=127.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+++|+.|||||||+++|..+... ...|+.|...  ..+..  .+..+.+||.+|+..++..|..++.++|+
T Consensus        10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~   84 (175)
T PF00025_consen   10 SKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADG   84 (175)
T ss_dssp             TTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred             ccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeee--CcEEEEEEeccccccccccceeeccccce
Confidence            3478999999999999999999999865443 3556665443  33444  34679999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc------CCcEEEecCCCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN------GLFFMETSAKTAT  158 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~  158 (200)
                      +|||+|.++++.+.+....+..+... ...++|+++++||.|+.+  ....+++.......      .+.++.|||.+|.
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~  162 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE  162 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred             eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence            99999999998888888777776664 236799999999999754  35566666554332      3358899999999


Q ss_pred             CHHHHHHHHHHhc
Q 029029          159 NVNDIFYEIAKRL  171 (200)
Q Consensus       159 ~i~~~~~~l~~~~  171 (200)
                      |+.+.++||.+.+
T Consensus       163 Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  163 GVDEGLEWLIEQI  175 (175)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=3.3e-27  Score=167.36  Aligned_cols=152  Identities=26%  Similarity=0.344  Sum_probs=116.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcc------cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQF------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +|+++|++|+|||||+++|.+...      ...+.++.+....  .+..  ....+++||+||++.+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999985322      1222334333332  2222  36789999999999999888999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-------cCCcEEEecCCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQE-------NGLFFMETSAKTA  157 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  157 (200)
                      +++|+|.++++++.....|+..+.... ..+.|+++++||+|+.+.  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999888888888887776532 367999999999998553  344445544432       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 029029          158 TNVNDIFYEIAK  169 (200)
Q Consensus       158 ~~i~~~~~~l~~  169 (200)
                      .|++++++||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=4.4e-27  Score=170.22  Aligned_cols=158  Identities=22%  Similarity=0.315  Sum_probs=124.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+..||+++|++|||||||++++.++.+. .+.++.+...  ..+.++  ...+.+||+||+..+...+..++..+|++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~i   90 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGI   90 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            456899999999999999999999976653 3444544332  333333  46799999999998888888899999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH----------------cCCcE
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQE----------------NGLFF  149 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~  149 (200)
                      ++|+|.++++++.....|+..+.... ..+.|+++++||+|+..  .+..++++.+...                ..+.+
T Consensus        91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T cd00879          91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV  168 (190)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence            99999999988988888887776533 35789999999999854  4556666666542                22468


Q ss_pred             EEecCCCCCCHHHHHHHHHHhc
Q 029029          150 METSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ++|||++|.|++++|+||.+.+
T Consensus       169 ~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         169 FMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EEeEecCCCChHHHHHHHHhhC
Confidence            9999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=2.7e-27  Score=166.66  Aligned_cols=152  Identities=24%  Similarity=0.405  Sum_probs=117.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      +|+++|++|+|||||++++.++.+.. ..++.+.+..  .+.. .....+.+||+||+..+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999877653 3455554332  2322 345789999999999988888889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHH------HHcCCcEEEecCCCCCCHHHHH
Q 029029           92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYA------QENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      .+++.++.....|+..+.... ..+.|+++++||+|+...  ...+++....      ...+++++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999988888888887775532 257999999999998542  2233333221      1234568999999999999999


Q ss_pred             HHHHH
Q 029029          165 YEIAK  169 (200)
Q Consensus       165 ~~l~~  169 (200)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=5.5e-27  Score=158.23  Aligned_cols=163  Identities=20%  Similarity=0.301  Sum_probs=131.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..++++|+++|..||||||++++|+ +.......|+.|....    +.....+.+++||.+|+...+..|+.||.++|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~-~~~~~~i~pt~gf~Ik----tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLL-GEDTDTISPTLGFQIK----TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhc-CCCccccCCccceeeE----EEEecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4669999999999999999999999 5556666777664432    2334578999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCC---CCC-HHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDAR---KVT-AEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      |+|+|++++..+++....++.+.. ....+.|+++++||.|+...-   .+. ..++..+++...++++.|||.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            999999999988887666655443 334678999999999986321   111 122455557788899999999999999


Q ss_pred             HHHHHHHHhcccc
Q 029029          162 DIFYEIAKRLPRV  174 (200)
Q Consensus       162 ~~~~~l~~~~~~~  174 (200)
                      +.+.||++.+.++
T Consensus       168 ~gidWL~~~l~~r  180 (185)
T KOG0073|consen  168 EGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998873

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=4.8e-26  Score=162.44  Aligned_cols=144  Identities=47%  Similarity=0.753  Sum_probs=129.3

Q ss_pred             CcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC
Q 029029           33 GQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG  112 (200)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  112 (200)
                      +.+.+.+.++.|.++....+.+++..+.+.||||+|++.+...+..+++++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45667788999999988888888999999999999999999999999999999999999999999999999999887765


Q ss_pred             CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          113 NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       113 ~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      ....|+++|+||+|+.+.+.+..+++..+++.++..++++||++|.|++++|++|++.+.+...
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence            5678999999999997766778888888888889999999999999999999999999876443

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=5.4e-27  Score=164.85  Aligned_cols=151  Identities=23%  Similarity=0.358  Sum_probs=118.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|++|||||||+++++++. .....++.+.....  ..+  ....+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999776 34455555544322  222  35789999999999988899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHHHHH
Q 029029           92 ITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +++++++.....|+..+.... ..+.|+++++||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888887766532 3688999999999986543  2333333322     2345799999999999999999


Q ss_pred             HHHH
Q 029029          166 EIAK  169 (200)
Q Consensus       166 ~l~~  169 (200)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=1.3e-26  Score=162.97  Aligned_cols=151  Identities=24%  Similarity=0.350  Sum_probs=113.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|++++|||||++++..+.+.. ..++.+.+..  .  +++....+++|||||++.+...+..++..+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998666543 3455444432  2  22346789999999999998899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHHHHH
Q 029029           92 ITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      .+++.++.....++..+.. ....++|+++|+||+|+.+..  ...++.....     ..+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998887776666554433 223578999999999986432  2222222211     1234699999999999999999


Q ss_pred             HHHH
Q 029029          166 EIAK  169 (200)
Q Consensus       166 ~l~~  169 (200)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=5.4e-29  Score=170.42  Aligned_cols=169  Identities=30%  Similarity=0.525  Sum_probs=158.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+|++|+|..++||||+|++++.+-+...+..++|+++....+.+.+.++.+.+||++|++++......|+++|.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            56899999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +||..+++++|+....|++.+.... ..+|.++|-||+|+.++.++...+++.++++.+..++.+|+++..|+..+|.+|
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL  176 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL  176 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence            9999999999999999999998874 679999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccCCC
Q 029029          168 AKRLPRVQPA  177 (200)
Q Consensus       168 ~~~~~~~~~~  177 (200)
                      ++++..+..+
T Consensus       177 aeK~~q~~kq  186 (246)
T KOG4252|consen  177 AEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHH
Confidence            9887765433

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=3.1e-26  Score=164.93  Aligned_cols=157  Identities=19%  Similarity=0.264  Sum_probs=121.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ++.++|+++|++|+|||||++++.++.+. .+.++.+.+.  .....  .++.+.+||+||+..++..+..++.++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999976543 2334443322  22222  3478999999999998889999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH------------cCCcEEEecC
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE------------NGLFFMETSA  154 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  154 (200)
                      +|+|++++.++.....++..+... ...++|+++|+||+|+..  .++.+++++....            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999888887777766543 235789999999999853  3455555544321            1234899999


Q ss_pred             CCCCCHHHHHHHHHHhc
Q 029029          155 KTATNVNDIFYEIAKRL  171 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~~  171 (200)
                      +++.|++++++||.+++
T Consensus       168 ~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      168 VRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             ccCCChHHHHHHHHhhC
Confidence            99999999999998753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=7.5e-26  Score=172.16  Aligned_cols=141  Identities=28%  Similarity=0.494  Sum_probs=121.4

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-------------eEEEEEEEeCCCccccc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-------------ATVKFEIWDTAGQERYH   73 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~   73 (200)
                      ....+||+|+|..|+|||||+++|.++.+...+.+++|.++....+.+++             ..+.++||||+|++.++
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            34579999999999999999999999888888888998887766666542             46889999999999999


Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC------------CCCeEEEEEeCcCccCCC---C---CCH
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN------------PNMVMALAGNKADLLDAR---K---VTA  135 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~~~ivv~nK~D~~~~~---~---~~~  135 (200)
                      .++..++.++|++|+|||++++.+++.+..|+..+.....            .++|+++|+||+|+.+.+   .   ...
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~  177 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV  177 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence            9999999999999999999999999999999999987531            258999999999996542   2   357


Q ss_pred             HHHHHHHHHcCC
Q 029029          136 EEAQAYAQENGL  147 (200)
Q Consensus       136 ~~~~~~~~~~~~  147 (200)
                      ++++++++.+++
T Consensus       178 e~a~~~A~~~g~  189 (334)
T PLN00023        178 DAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHcCC
Confidence            889999999885

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.9e-25  Score=160.08  Aligned_cols=154  Identities=21%  Similarity=0.256  Sum_probs=112.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCc-------ccCcccC------cceeeEEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQ-------FIEFQES------TIGAAFFSQTLAV-----NDATVKFEIWDTAGQERYH   73 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~   73 (200)
                      +|+++|++++|||||+++|++..       +...+.+      ..|.+........     ++..+.+++|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998632       1111111      2234443333222     5667889999999999998


Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc---EE
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF---FM  150 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~  150 (200)
                      ..+..++..+|++|+|+|+++..++.....|....    ..++|+++|+||+|+.+..  .......+++..+++   ++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            88889999999999999999865555555443322    2467899999999985422  222334555556663   89


Q ss_pred             EecCCCCCCHHHHHHHHHHhc
Q 029029          151 ETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ++||++|.|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999999876

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=1.7e-25  Score=158.75  Aligned_cols=155  Identities=19%  Similarity=0.167  Sum_probs=107.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---------chhhhhcC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LAPMYYRG   82 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~   82 (200)
                      +|+++|++|+|||||+++|.+......  +..+.+..............+++|||||......         ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            799999999999999999997665321  1222222222223334467899999999742110         11111234


Q ss_pred             CcEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           83 AAAAIIVYDITNQASF--ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      +|++++|+|++++.++  +....|+..+.... .+.|+++|+||+|+.+.....  ....+....+.+++++||++|.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence            6899999999986543  45567777776542 478999999999986543322  244555556778999999999999


Q ss_pred             HHHHHHHHHhc
Q 029029          161 NDIFYEIAKRL  171 (200)
Q Consensus       161 ~~~~~~l~~~~  171 (200)
                      +++|+++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.7e-25  Score=158.94  Aligned_cols=157  Identities=20%  Similarity=0.180  Sum_probs=109.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeE-EEEEEEeCCCccc----cccchhhh---hcCC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQER----YHSLAPMY---YRGA   83 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~----~~~~~~~~---~~~~   83 (200)
                      +|+++|++|+|||||+++|.+....  .....+.+.......+.... ..+.+|||||...    .+.....+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~--v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK--IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc--ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            6899999999999999999864431  11111122211111111122 4899999999632    22233333   3469


Q ss_pred             cEEEEEEeCCCH-HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-cCCcEEEecCCCCCC
Q 029029           84 AAAIIVYDITNQ-ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATN  159 (200)
Q Consensus        84 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~  159 (200)
                      |++++|+|.+++ .+++.+..|++.+.....  .++|+++|+||+|+.+.... .+....+... .+.+++++||+++.|
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            999999999998 788888888888876532  46899999999998654432 3334444444 377899999999999


Q ss_pred             HHHHHHHHHHhc
Q 029029          160 VNDIFYEIAKRL  171 (200)
Q Consensus       160 i~~~~~~l~~~~  171 (200)
                      ++++|+++.+.+
T Consensus       159 i~~l~~~i~~~~  170 (170)
T cd01898         159 LDELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2e-25  Score=154.33  Aligned_cols=161  Identities=22%  Similarity=0.356  Sum_probs=132.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..++.+|+++|..++||||++++|-.+..... .|+.|.........    +..|++||.+|++.++..|+.|+.+.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            46789999999999999999999987666554 78887665555543    78999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-----cEEEecCCCCCCH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-----FFMETSAKTATNV  160 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i  160 (200)
                      |||+|+++++.+.+.++.+..+..... .+.|+++++||.|+.+.  .+..++.+......+     .+..|+|.+|.|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            999999999999998877777766544 68999999999998654  455555555444433     3668999999999


Q ss_pred             HHHHHHHHHhcccc
Q 029029          161 NDIFYEIAKRLPRV  174 (200)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (200)
                      .+.++|+.+.+...
T Consensus       167 ~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  167 YEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.7e-25  Score=156.76  Aligned_cols=152  Identities=27%  Similarity=0.404  Sum_probs=118.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      .|+++|++|+|||||+++|.+..+...+.++.+.....  ....  ...+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37999999999999999999888877777776655432  2222  3789999999999999899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHHHHHH
Q 029029           92 ITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      .+++.++.....|+..+... ...++|+++++||.|+.+...  ........     ....++++++|+++|.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            99998888887777766543 235789999999999865322  22222221     12335789999999999999999


Q ss_pred             HHHH
Q 029029          166 EIAK  169 (200)
Q Consensus       166 ~l~~  169 (200)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=6.6e-25  Score=156.44  Aligned_cols=157  Identities=22%  Similarity=0.294  Sum_probs=116.4

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.++|+++|++|||||||++++.+.... ...++.|.+..  .+...  +..+.+||++|+..+...+..+++.+|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            3455899999999999999999999965443 34555554332  23333  4679999999998888888888999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-----CcEEEecCCCCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-----LFFMETSAKTATN  159 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  159 (200)
                      +++|+|.++..++.....++..+... ...++|+++++||+|+.+..  ..+++........     .+++++||++|.|
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g  162 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEG  162 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence            99999999988888877776665443 23579999999999986432  2222222211111     1367999999999


Q ss_pred             HHHHHHHHHH
Q 029029          160 VNDIFYEIAK  169 (200)
Q Consensus       160 i~~~~~~l~~  169 (200)
                      ++++|+||++
T Consensus       163 i~~~~~~l~~  172 (173)
T cd04155         163 LQEGMNWVCK  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=1.8e-24  Score=151.22  Aligned_cols=158  Identities=30%  Similarity=0.488  Sum_probs=124.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|++|+|||||++++.+......+.++.+.+........++..+.+.+||+||+..+...+..++..++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999998886666666766666666666777668999999999998888888889999999999


Q ss_pred             EeCCCH-HHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           90 YDITNQ-ASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        90 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||.++.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 5665554 66666665543378999999999986543 33333334444456689999999999999999986


Q ss_pred             H
Q 029029          168 A  168 (200)
Q Consensus       168 ~  168 (200)
                      -
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=3.5e-25  Score=171.86  Aligned_cols=162  Identities=20%  Similarity=0.114  Sum_probs=118.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCcccc----ccc---hhhhhcC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERY----HSL---APMYYRG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~----~~~---~~~~~~~   82 (200)
                      ..|+|+|.|+||||||+++|.+....  ....+.++..+....+.. ....+++||+||....    ..+   +-..++.
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            46899999999999999999865422  333333444444433322 3457999999996421    112   2224567


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ++++++|+|++++++++.+..|..++.....  .++|+++|+||+|+.+......+....++...+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999987788888889888877532  47899999999998754433333445555566788999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 029029          161 NDIFYEIAKRLPRV  174 (200)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (200)
                      ++++++|.+.+.+.
T Consensus       317 ~eL~~~L~~~l~~~  330 (335)
T PRK12299        317 DELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987654

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=1.3e-24  Score=169.69  Aligned_cols=173  Identities=18%  Similarity=0.239  Sum_probs=119.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-ccchh-------hh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-HSLAP-------MY   79 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~-------~~   79 (200)
                      ++.++|+++|.+|+|||||+|+|++..+. ..++..+++.......+...+.++.||||||.... ..+..       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            56679999999999999999999976553 23344444333222222233457899999998532 22221       23


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEEEecCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFMETSAKT  156 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  156 (200)
                      +..+|++++|+|..+.  +... ..|+..+...   +.|.++|+||+|+.+.   ...++.+.+...+  ..++++||++
T Consensus       129 l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        129 LHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             hhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            6799999999997663  4444 3445555443   4577889999998542   2344555555443  5799999999


Q ss_pred             CCCHHHHHHHHHHhccccCCCCCCCCceeccCCCC
Q 029029          157 ATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGE  191 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (200)
                      |.|+++++++|.+.+.+ .+..+|.+.+ +++|.+
T Consensus       201 g~gv~eL~~~L~~~l~~-~~~~~~~~~~-td~~~~  233 (339)
T PRK15494        201 GKNIDGLLEYITSKAKI-SPWLYAEDDI-TDLPMR  233 (339)
T ss_pred             ccCHHHHHHHHHHhCCC-CCCCCCCCCC-CCCCHH
Confidence            99999999999998876 5567788777 777654

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=9.8e-25  Score=159.66  Aligned_cols=157  Identities=22%  Similarity=0.174  Sum_probs=110.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPM   78 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~   78 (200)
                      ...++|+|+|++|||||||++++++........+..+.+........++ ...+.+|||||....         .... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            4458999999999999999999997653322112222222222233332 237999999997321         1111 1


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                      .+..+|++++|+|.+++.++.....|...+......++|+++|+||+|+.+....     .......+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence            3568999999999999887777777777776655457899999999998654321     13344566789999999999


Q ss_pred             CHHHHHHHHHHhc
Q 029029          159 NVNDIFYEIAKRL  171 (200)
Q Consensus       159 ~i~~~~~~l~~~~  171 (200)
                      |+++++++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=1.4e-24  Score=165.15  Aligned_cols=170  Identities=20%  Similarity=0.140  Sum_probs=114.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcCC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRGA   83 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~   83 (200)
                      +|+++|++|+|||||+|+|++.... ..++..+++.............++.+|||||......        ....++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~-~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKIS-ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEe-ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6999999999999999999976542 2333333333322222222345799999999754311        123456899


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHH
Q 029029           84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVND  162 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  162 (200)
                      |++++|+|.++..+..  ..++..+..   .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999865543  333344433   3689999999999864222 22334444444444 789999999999999


Q ss_pred             HHHHHHHhccccCCCCCCCCceeccCCC
Q 029029          163 IFYEIAKRLPRVQPAPNPSGMVLMDRPG  190 (200)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (200)
                      ++++|.+.+.+. +..+|.+.+ +++|.
T Consensus       155 L~~~l~~~l~~~-~~~~~~~~~-t~~~~  180 (270)
T TIGR00436       155 LAAFIEVHLPEG-PFRYPEDYV-TDQPD  180 (270)
T ss_pred             HHHHHHHhCCCC-CCCCCCccc-CCCCH
Confidence            999999987664 456676665 55554

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=2.4e-24  Score=151.98  Aligned_cols=152  Identities=16%  Similarity=0.139  Sum_probs=102.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCc---ccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      +.|+++|++|+|||||+++|.+..   +.....+..+.+.......... ...+++|||||++.+......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999998532   2222222222233223333332 468999999999888766666788999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHH---cCCcEEEecCCCCCC
Q 029029           88 IVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQE---NGLFFMETSAKTATN  159 (200)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~  159 (200)
                      +|+|.++   +++.+.    +..+...  ...|+++++||+|+.+...  ...++..+..+.   .+.+++++||+++.|
T Consensus        80 ~V~d~~~~~~~~~~~~----~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREH----LEILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHH----HHHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   333322    2222222  1248999999999865321  112333444444   467899999999999


Q ss_pred             HHHHHHHHHH
Q 029029          160 VNDIFYEIAK  169 (200)
Q Consensus       160 i~~~~~~l~~  169 (200)
                      ++++++++.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=1.3e-23  Score=155.28  Aligned_cols=167  Identities=39%  Similarity=0.570  Sum_probs=136.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+++|+.|+|||||+++|..+.+...+.++.+..+...........+.+.+|||+|+++++..+..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999888888888888777777777666668899999999999999999999999999999


Q ss_pred             EEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHc---CCcEEEe
Q 029029           89 VYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQEN---GLFFMET  152 (200)
Q Consensus        89 v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~  152 (200)
                      ++|..... +++....|+..+......+.|+++++||+|+....            ..............   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            99999844 45556889999888755679999999999997653            22333333332222   3348999


Q ss_pred             cCC--CCCCHHHHHHHHHHhccccC
Q 029029          153 SAK--TATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       153 Sa~--~~~~i~~~~~~l~~~~~~~~  175 (200)
                      |++  ++.++.++|..+.+.+....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhh
Confidence            999  99999999999999886543

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.6e-23  Score=145.07  Aligned_cols=154  Identities=47%  Similarity=0.790  Sum_probs=121.3

Q ss_pred             EECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC
Q 029029           15 LLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT   93 (200)
Q Consensus        15 vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   93 (200)
                      ++|++|+|||||++++.+... .....++. ................+.+||+||...+...+..++..+|++++|+|.+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999997766 34444444 6666667777777899999999999888777788899999999999999


Q ss_pred             CHHHHHHHHHHH-HHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH-HHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           94 NQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDARKVTAEE-AQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        94 ~~~s~~~~~~~~-~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      ++.++.....|+ .........++|+++++||+|+.......... ..........+++++|+.++.|+++++++|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            998888887763 33333445789999999999987654433322 34445566789999999999999999999853

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.92  E-value=2.6e-23  Score=139.03  Aligned_cols=169  Identities=22%  Similarity=0.345  Sum_probs=142.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccC--cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-HSLAPMYYRGAA   84 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d   84 (200)
                      .+..||+++|..++|||++++.|+.+....  ...+++...+....-+.++....+.++||.|.... ..+-.+|+.-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            457899999999999999999999887754  34455544444444444566678999999997766 677888999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI  163 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (200)
                      ++++||+..+++||+.+..+...|.+..+ ..+|++|.+||+|+.+++.++.+.+..|++...++.+++++.+...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999998877777777543 67999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccCC
Q 029029          164 FYEIAKRLPRVQP  176 (200)
Q Consensus       164 ~~~l~~~~~~~~~  176 (200)
                      |..++.++...+.
T Consensus       167 f~~l~~rl~~pqs  179 (198)
T KOG3883|consen  167 FTYLASRLHQPQS  179 (198)
T ss_pred             HHHHHHhccCCcc
Confidence            9999988766544

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=1.7e-24  Score=149.58  Aligned_cols=134  Identities=19%  Similarity=0.234  Sum_probs=97.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhhhcCCcEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-----RYHSLAPMYYRGAAAA   86 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   86 (200)
                      ||+++|++|+|||||+++|.+....  +.++.+.++            .-.+|||||..     .+.... ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------------NDGAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------------cCeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            8999999999999999999866532  222222111            12689999973     233332 247899999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFY  165 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  165 (200)
                      |+|+|.+++.++.. ..|....      ..|+++|+||+|+.+ .....+...++++..+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999877644 2343321      248999999999865 33455667777777776 799999999999999999


Q ss_pred             HHH
Q 029029          166 EIA  168 (200)
Q Consensus       166 ~l~  168 (200)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=3.6e-24  Score=155.48  Aligned_cols=162  Identities=19%  Similarity=0.228  Sum_probs=112.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh--CcccCcc------------cCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK--GQFIEFQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA   76 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   76 (200)
                      .+|+++|.+++|||||+++|+.  +.+....            ..+.|.+.......++.....+++|||||++++...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999996  3433322            1234555555555666667899999999999999899


Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHHHHHH-------HcCCc
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQ-------ENGLF  148 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  148 (200)
                      ..++..+|++++|+|.++. .+.....++.....   .++|+++++||+|+.+.+. ...+++..+.+       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            9999999999999999873 22333334444333   3688999999999864322 11233444432       23678


Q ss_pred             EEEecCCCCCCHHHH------HHHHHHhccccCC
Q 029029          149 FMETSAKTATNVNDI------FYEIAKRLPRVQP  176 (200)
Q Consensus       149 ~~~~Sa~~~~~i~~~------~~~l~~~~~~~~~  176 (200)
                      ++++||++|.|+.++      +++|.+.+...-|
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~  192 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP  192 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence            999999999777443      4455555554433

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=157.60  Aligned_cols=156  Identities=23%  Similarity=0.247  Sum_probs=105.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccch
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSLA   76 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~   76 (200)
                      ...++|+++|++|+|||||+++|.+..+...  ...+++.........    .+++|||||           ++.++..+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVG--KRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4578999999999999999999997665432  333555544444332    599999999           34455544


Q ss_pred             hhhhc----CCcEEEEEEeCCCHHHH----H------HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH
Q 029029           77 PMYYR----GAAAAIIVYDITNQASF----E------RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA  142 (200)
Q Consensus        77 ~~~~~----~~d~~i~v~d~~~~~s~----~------~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~  142 (200)
                      ..++.    .++++++|+|.+.....    .      .....+..+.   ..++|+++|+||+|+.+..   .+...++.
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence            44443    45788889988642111    0      0011122222   2478999999999986432   33445555


Q ss_pred             HHcCC---------cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          143 QENGL---------FFMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       143 ~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      +..++         +++++||++| |+++++++|.+.+.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            55554         4799999999 999999999998766543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=2e-24  Score=149.33  Aligned_cols=148  Identities=19%  Similarity=0.217  Sum_probs=105.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--cC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY--RG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~   82 (200)
                      ++|+++|.|++|||||+|+|++...  .....+|++.......+...+..+.++|+||...+..      ....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999997663  3455566666666555543447899999999543322      222233  68


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      .|++|+|+|.++.+.   -......+...   ++|+++++||+|......+.. +...+++..+++++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r---~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLER---NLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHH---HHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHH---HHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            999999999987532   22333444443   689999999999876555443 36777888999999999999999999


Q ss_pred             HHHHH
Q 029029          163 IFYEI  167 (200)
Q Consensus       163 ~~~~l  167 (200)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=3.8e-23  Score=145.05  Aligned_cols=148  Identities=17%  Similarity=0.147  Sum_probs=106.4

Q ss_pred             EECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhhhc--CCcEE
Q 029029           15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYYR--GAAAA   86 (200)
Q Consensus        15 vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~--~~d~~   86 (200)
                      |+|.+|+|||||++++.+........+..+.+.....+..++  ..+.+|||||+..+...      ...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999997654333333333333334444443  57999999998766542      444554  89999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      ++|+|.++++..   ..++..+..   .++|+++++||+|+.+...+..+ ...+....+.+++++||.++.|+++++++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999886442   233333333   36899999999999765443333 45667777899999999999999999999


Q ss_pred             HHHhc
Q 029029          167 IAKRL  171 (200)
Q Consensus       167 l~~~~  171 (200)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=2.2e-23  Score=147.78  Aligned_cols=157  Identities=18%  Similarity=0.175  Sum_probs=105.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      .|+|+|++|+|||||+++|..+.+.....+....+......... +....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999776654322222222212222222 24678999999999888888888889999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH-HHHHHHHH------HcCCcEEEecCCCCCCHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA-EEAQAYAQ------ENGLFFMETSAKTATNVNDI  163 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~  163 (200)
                      |.++..... ....+..+..   .++|+++|+||+|+........ .....+..      ...++++++|+++|.|++++
T Consensus        82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998743211 1122222322   4689999999999864321111 11111111      12357999999999999999


Q ss_pred             HHHHHHhcc
Q 029029          164 FYEIAKRLP  172 (200)
Q Consensus       164 ~~~l~~~~~  172 (200)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=6.5e-23  Score=160.43  Aligned_cols=154  Identities=23%  Similarity=0.198  Sum_probs=108.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMY   79 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~   79 (200)
                      ..++|+++|.+|+|||||+|+|++........+..+.+.....+.+++ +..+.+|||+|..+         +.... ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            348999999999999999999997654322222222333344444432 35799999999721         22211 24


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN  159 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (200)
                      +.++|++++|+|.+++.+++....|...+......++|+++|+||+|+.....     .... .....+++++||++|.|
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~G  339 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGEG  339 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCCC
Confidence            67899999999999988777776666666655445789999999999864321     1111 12234689999999999


Q ss_pred             HHHHHHHHHHh
Q 029029          160 VNDIFYEIAKR  170 (200)
Q Consensus       160 i~~~~~~l~~~  170 (200)
                      +++++++|.+.
T Consensus       340 I~eL~~~I~~~  350 (351)
T TIGR03156       340 LDLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=6.6e-23  Score=159.09  Aligned_cols=158  Identities=22%  Similarity=0.169  Sum_probs=110.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCccccc----cchhh---hhcC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYH----SLAPM---YYRG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~----~~~~~---~~~~   82 (200)
                      ..|+|+|.++||||||+++|.+....  ....+.++..+....+.. ....+++||+||.....    .+...   .+..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            57899999999999999999965432  112222222222222222 23689999999974221    22223   3457


Q ss_pred             CcEEEEEEeCCCH---HHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029           83 AAAAIIVYDITNQ---ASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA  157 (200)
Q Consensus        83 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (200)
                      ++++++|+|+++.   ++++.+..|.+++....  ...+|+++|+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   56777777777776543  24789999999999865432 233345555566788999999999


Q ss_pred             CCHHHHHHHHHHhc
Q 029029          158 TNVNDIFYEIAKRL  171 (200)
Q Consensus       158 ~~i~~~~~~l~~~~  171 (200)
                      .|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=1.8e-23  Score=149.26  Aligned_cols=155  Identities=22%  Similarity=0.180  Sum_probs=105.5

Q ss_pred             EECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccc----cccch---hhhhcCCcEE
Q 029029           15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQER----YHSLA---PMYYRGAAAA   86 (200)
Q Consensus        15 vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~---~~~~~~~d~~   86 (200)
                      ++|++|||||||+++|.+....  .....+++.......+... ...+.+|||||...    .+...   ...+..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK--VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc--ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            5899999999999999976541  1112222222222222222 56789999999632    12222   2346789999


Q ss_pred             EEEEeCCCH------HHHHHHHHHHHHHHHhCC-------CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEec
Q 029029           87 IIVYDITNQ------ASFERAKKWVQELQAQGN-------PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus        87 i~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                      ++|+|..++      .+++....|...+.....       .++|+++|+||+|+..................+.+++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      467777777776655432       4789999999999865443333222334444567899999


Q ss_pred             CCCCCCHHHHHHHHHHhc
Q 029029          154 AKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~  171 (200)
                      |+++.|++++++++.+.+
T Consensus       159 a~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         159 AKTEEGLDELIRAIYELL  176 (176)
T ss_pred             hhhhcCHHHHHHHHHhhC
Confidence            999999999999998753

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=6.2e-23  Score=143.64  Aligned_cols=147  Identities=19%  Similarity=0.168  Sum_probs=103.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhcC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMYYRG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~   82 (200)
                      ++|+++|++|+|||||++++++..... .....+++..............+.+|||||.......        ....+..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            589999999999999999999765321 1222233322222222223467899999997654322        2235678


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      +|++++|+|.+++.+......+..      ..+.|+++++||+|+.+....       .....+.+++++||+++.|+++
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~  147 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDE  147 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHH
Confidence            999999999998766655433322      357899999999998754432       3345567899999999999999


Q ss_pred             HHHHHHHhc
Q 029029          163 IFYEIAKRL  171 (200)
Q Consensus       163 ~~~~l~~~~  171 (200)
                      ++.+|.+.+
T Consensus       148 l~~~l~~~~  156 (157)
T cd04164         148 LKEALLELA  156 (157)
T ss_pred             HHHHHHHhh
Confidence            999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>COG1159 Era GTPase [General function prediction only]

Probab=99.91  E-value=4.6e-23  Score=153.15  Aligned_cols=179  Identities=19%  Similarity=0.159  Sum_probs=129.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APM   78 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~   78 (200)
                      ..+...|+++|.|++|||||+|+|+ +...+..++..+++......-+...+.++.|+||||.......        ...
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~-G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALV-GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHh-cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            4567789999999999999999999 5555667777777777766666666889999999996543222        223


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTA  157 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (200)
                      .+..+|+++||+|..+...- ..+..++.+..   .+.|+++++||+|..............+...... .++++||.+|
T Consensus        82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            46789999999999874221 11223344433   4679999999999876544222333333333333 6899999999


Q ss_pred             CCHHHHHHHHHHhccccCCCCCCCCceeccCCCCC
Q 029029          158 TNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGER  192 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  192 (200)
                      .|++.+.+.+...+.+... ++|.+.+ +++|.+.
T Consensus       158 ~n~~~L~~~i~~~Lpeg~~-~yp~d~i-tD~~~rf  190 (298)
T COG1159         158 DNVDTLLEIIKEYLPEGPW-YYPEDQI-TDRPERF  190 (298)
T ss_pred             CCHHHHHHHHHHhCCCCCC-cCChhhc-cCChHHH
Confidence            9999999999998877655 7777777 7777654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=9.7e-23  Score=136.62  Aligned_cols=114  Identities=32%  Similarity=0.632  Sum_probs=90.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCccc--CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFI--EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ||+|+|++|||||||+++|.+....  ....+..+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988776  22334445556666777778877899999999998888888889999999999


Q ss_pred             EeCCCHHHHHHHHH---HHHHHHHhCCCCCeEEEEEeCcC
Q 029029           90 YDITNQASFERAKK---WVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        90 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                      ||.+++.+++.+..   |+..+... ..+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence            99999999988754   55566554 35699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=1.8e-22  Score=155.34  Aligned_cols=176  Identities=18%  Similarity=0.182  Sum_probs=115.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc--------cchhhh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMY   79 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~   79 (200)
                      .+...|+|+|++|||||||+|+|++.... ..++..+++.............++.+|||||.....        ......
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            45678999999999999999999965542 222333333322222222234789999999975432        122335


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTAT  158 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  158 (200)
                      +..+|++++|+|.+++... .....+..+.   ..+.|+++|+||+|+.............+.+..+ ..++++||+++.
T Consensus        82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            6789999999999883211 1122223333   2468999999999986432223334445544444 579999999999


Q ss_pred             CHHHHHHHHHHhccccCCCCCCCCceeccCCC
Q 029029          159 NVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPG  190 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (200)
                      |+++++++|.+.+.+.. ..+|.+.+ ++.+.
T Consensus       158 gv~~L~~~L~~~l~~~~-~~y~~~~~-td~~~  187 (292)
T PRK00089        158 NVDELLDVIAKYLPEGP-PYYPEDQI-TDRPE  187 (292)
T ss_pred             CHHHHHHHHHHhCCCCC-CCCCCCCC-CCCCH
Confidence            99999999999887654 46666554 44443

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=9.3e-23  Score=142.81  Aligned_cols=148  Identities=20%  Similarity=0.153  Sum_probs=99.2

Q ss_pred             EEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcCCcE
Q 029029           14 VLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRGAAA   85 (200)
Q Consensus        14 ~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~   85 (200)
                      +++|.+|+|||||+++|++.... ......+++...........+..+.+|||||......        .....+..+|+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            58999999999999999965421 1112222222222222223346799999999876443        33346788999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIF  164 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~  164 (200)
                      +++|+|..++.+.... .....+..   .+.|+++|+||+|+.+....     .......+. +++++|++++.|++++|
T Consensus        80 ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~  150 (157)
T cd01894          80 ILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLL  150 (157)
T ss_pred             EEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHH
Confidence            9999999875433322 22222322   35899999999998654322     233344555 78999999999999999


Q ss_pred             HHHHHhc
Q 029029          165 YEIAKRL  171 (200)
Q Consensus       165 ~~l~~~~  171 (200)
                      +++.+.+
T Consensus       151 ~~l~~~~  157 (157)
T cd01894         151 DAILELL  157 (157)
T ss_pred             HHHHhhC
Confidence            9998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=1.5e-22  Score=160.11  Aligned_cols=174  Identities=18%  Similarity=0.131  Sum_probs=121.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccccc-------cchhhhhcCC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYH-------SLAPMYYRGA   83 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~-------~~~~~~~~~~   83 (200)
                      .|+|+|.||||||||+|+|++...  ...+.++++..+....+... ...+.++||||.....       ...-..+..+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            799999999999999999996553  34444555555554444332 3469999999975321       1112246789


Q ss_pred             cEEEEEEeCC---CHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEEEecCCC
Q 029029           84 AAAIIVYDIT---NQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFMETSAKT  156 (200)
Q Consensus        84 d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  156 (200)
                      |++++|+|++   ..+.++....|++.+.....  ..+|+++|+||+|+.....+ .+.+..+.+..+  .+++.+||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999988   44566666777777766432  46899999999998653322 233444444434  4689999999


Q ss_pred             CCCHHHHHHHHHHhccccCCCCCCCCceeccCCC
Q 029029          157 ATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPG  190 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (200)
                      +.++++++++|.+.+.+. +..+|.+.. ++++.
T Consensus       318 g~GIdeLl~~I~~~L~~~-~~~~~~~~~-td~~~  349 (390)
T PRK12298        318 GLGVKELCWDLMTFIEEN-PREEAEEAE-APEKV  349 (390)
T ss_pred             CcCHHHHHHHHHHHhhhC-cccCCcccc-cCccH
Confidence            999999999999988765 455666555 44443

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.5e-22  Score=131.76  Aligned_cols=159  Identities=23%  Similarity=0.393  Sum_probs=126.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .++++|+.+|..++||||++..|..+.. ....|+.|....    .+...+..|.+||.+|++..+.+|.+|+....++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve----tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE----EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            4589999999999999999999985543 334456554433    33446789999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-----cEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-----FFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~  161 (200)
                      ||+|+.+++..++.+..+..+... ...+.|+++.+||.|+...  ..+.++..+.+...+     -+.+++|.+|.++.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            999999988888876666555443 3367899999999998654  567777777655444     36689999999999


Q ss_pred             HHHHHHHHhccc
Q 029029          162 DIFYEIAKRLPR  173 (200)
Q Consensus       162 ~~~~~l~~~~~~  173 (200)
                      +.|.||.+.+.+
T Consensus       168 eglswlsnn~~~  179 (180)
T KOG0071|consen  168 EGLSWLSNNLKE  179 (180)
T ss_pred             HHHHHHHhhccC
Confidence            999999887643

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.8e-22  Score=145.60  Aligned_cols=157  Identities=19%  Similarity=0.185  Sum_probs=110.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCc--------------ceeeEEEEEEEECCeEEEEEEEeCCCccccccchh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--------------IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP   77 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   77 (200)
                      +|+|+|.+|+|||||+++|++..........              .+.+..............+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            5899999999999999999976654332111              11222222222333356899999999988888888


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHHH-----------
Q 029029           78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQE-----------  144 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~-----------  144 (200)
                      .++..+|++++|+|++++.... ...++..+..   .+.|+++++||+|+.......  ...+++..+.           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            8899999999999998764332 2333443333   578999999999987532211  2223333332           


Q ss_pred             ---cCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          145 ---NGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       145 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                         ...+++++||++|.|+++++.+|.+.+.
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence               3467999999999999999999999874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=2.1e-22  Score=161.75  Aligned_cols=153  Identities=19%  Similarity=0.210  Sum_probs=110.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccccccc--------hh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSL--------AP   77 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   77 (200)
                      ...++|+++|++|+|||||+|+|++... ....+..|++.  ....+.++  +..+.+|||||.......        ..
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            3568999999999999999999996542 11223334333  33444444  456899999998654332        23


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029           78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA  157 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (200)
                      .++..+|++++|+|.+++.+++..  |+..+..   .++|+++|+||+|+.+.      ....+++..+.+++.+||++ 
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence            467899999999999988776654  6655533   46899999999998543      12344566778899999998 


Q ss_pred             CCHHHHHHHHHHhccccC
Q 029029          158 TNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~  175 (200)
                      .|++++|+.+.+.+....
T Consensus       346 ~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       346 LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            699999999999887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=8.1e-22  Score=156.78  Aligned_cols=158  Identities=18%  Similarity=0.205  Sum_probs=113.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccc----cccchhhh---hcCC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQER----YHSLAPMY---YRGA   83 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~~~---~~~~   83 (200)
                      .|+|+|.++||||||+++|++....  ....+.++..+....+... ...+.+||+||...    ...+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            7999999999999999999965532  2233334444443333222 46799999999642    11222233   4569


Q ss_pred             cEEEEEEeCCCH---HHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           84 AAAIIVYDITNQ---ASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        84 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                      +++++|+|+++.   ++++....|...+.....  .++|+++|+||+|+.+    ..+.+..+.+..+.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999854   566777777777766532  4789999999999743    2334556666666789999999999


Q ss_pred             CHHHHHHHHHHhccccC
Q 029029          159 NVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~~~  175 (200)
                      |+++++++|.+.+....
T Consensus       314 GI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        314 GLDELLYAVAELLEETP  330 (424)
T ss_pred             CHHHHHHHHHHHHHhCc
Confidence            99999999998886654

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.8e-22  Score=145.36  Aligned_cols=160  Identities=18%  Similarity=0.132  Sum_probs=101.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC----cccCc---c--cCcceeeEEEEEEE----------ECCeEEEEEEEeCCCccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG----QFIEF---Q--ESTIGAAFFSQTLA----------VNDATVKFEIWDTAGQER   71 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~----~~~~~---~--~~~~~~~~~~~~~~----------~~~~~~~~~i~D~~G~~~   71 (200)
                      ++|+++|+.++|||||+++|+..    .+...   .  ..+.+.......+.          ..+....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862    11111   1  11222222222222          123367899999999875


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHHHHHHHH------
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEEAQAYAQ------  143 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~------  143 (200)
                      +..........+|++++|+|.++.........+.  +...  .+.|+++++||+|+......  ..++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            4333334456789999999998743322222221  1222  25699999999998643221  1222222211      


Q ss_pred             -HcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          144 -ENGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       144 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                       ..+++++++||++|.|++++++++.+++...
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence             1357899999999999999999999988653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=3.2e-22  Score=146.10  Aligned_cols=161  Identities=16%  Similarity=0.191  Sum_probs=102.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCccc---CcccCc--ceeeEEEEEEE-----------------------EC--C----
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFI---EFQEST--IGAAFFSQTLA-----------------------VN--D----   56 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~---~~~~~~--~~~~~~~~~~~-----------------------~~--~----   56 (200)
                      ++|+++|+.|+|||||+..|.+....   ......  ....+......                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            57999999999999999999743111   111111  11111110000                       00  0    


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--C
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--T  134 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~  134 (200)
                      ....+.||||||++.+.......+..+|++++|+|..++.........+..+...  ...|+++++||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1267999999999888777777788899999999998742111222223333322  22478999999998653211  1


Q ss_pred             HHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          135 AEEAQAYAQEN---GLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       135 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      .+.++.++...   +.+++++||++|.|+++++++|.+.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            12333433332   5689999999999999999999987755

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=2.6e-22  Score=162.03  Aligned_cols=148  Identities=20%  Similarity=0.234  Sum_probs=106.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceee--EEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERYHSL--------APM   78 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~   78 (200)
                      ..++|+++|++|+|||||+|+|++.... ...+..+++  .....+..+  +..+.+|||||.......        ...
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~  290 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERA-IVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSRE  290 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence            3589999999999999999999965431 122233333  333334443  457899999998654332        223


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                      ++..+|++++|+|.+++.+++....|..      ..+.|+++|+||+|+.+.....        ...+.+++++||++|.
T Consensus       291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~  356 (449)
T PRK05291        291 AIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGE  356 (449)
T ss_pred             HHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCC
Confidence            5788999999999998876665433332      3568999999999986533221        3445679999999999


Q ss_pred             CHHHHHHHHHHhccc
Q 029029          159 NVNDIFYEIAKRLPR  173 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~  173 (200)
                      |+++++++|.+.+..
T Consensus       357 GI~~L~~~L~~~l~~  371 (449)
T PRK05291        357 GIDELREAIKELAFG  371 (449)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998865

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=4.8e-22  Score=161.85  Aligned_cols=155  Identities=25%  Similarity=0.228  Sum_probs=106.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYY   80 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   80 (200)
                      ...+|+|+|.+|+|||||+++|++... ....+..|++...........+..+.+|||||.+.        +......++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            346899999999999999999996543 23344555554443333322345689999999752        223345568


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCC
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATN  159 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  159 (200)
                      ..+|++|+|+|.++..++.. ..+...+..   .++|+++|+||+|+....   .+....+  ..++ ..+++||++|.|
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g  186 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG  186 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence            89999999999998654432 233333333   468999999999985421   1112222  2333 357999999999


Q ss_pred             HHHHHHHHHHhccc
Q 029029          160 VNDIFYEIAKRLPR  173 (200)
Q Consensus       160 i~~~~~~l~~~~~~  173 (200)
                      ++++|+++.+.+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999998866

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=3.4e-22  Score=140.35  Aligned_cols=143  Identities=17%  Similarity=0.181  Sum_probs=99.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc----cchhhhhcCCcEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH----SLAPMYYRGAAAAI   87 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~d~~i   87 (200)
                      +|+++|++|+|||||+++|.+.. .. ...+.+       ..+...    .+|||||.....    ......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-cc-CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999987432 11 111111       112221    269999973222    11123468999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC--cEEEecCCCCCCHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL--FFMETSAKTATNVNDIFY  165 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|+|.++.+++  +..|+..+    ..+.|+++++||+|+.+   ...+.+..+++..+.  +++++||+++.|++++|+
T Consensus        70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            99999987654  22343332    24678999999999854   345566777777775  899999999999999999


Q ss_pred             HHHHhccccCC
Q 029029          166 EIAKRLPRVQP  176 (200)
Q Consensus       166 ~l~~~~~~~~~  176 (200)
                      ++.+.+.....
T Consensus       141 ~l~~~~~~~~~  151 (158)
T PRK15467        141 YLASLTKQEEA  151 (158)
T ss_pred             HHHHhchhhhc
Confidence            99988865543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=1.6e-21  Score=161.75  Aligned_cols=159  Identities=19%  Similarity=0.231  Sum_probs=116.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcc-------cCccc------CcceeeEEEEEEEE-----CCeEEEEEEEeCCCcccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQF-------IEFQE------STIGAAFFSQTLAV-----NDATVKFEIWDTAGQERY   72 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~-------~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~   72 (200)
                      .+|+++|+.++|||||+++|+...-       ...+.      ...|.++......+     ++..+.+++|||||+.++
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            5899999999999999999986421       11111      12355554443333     456689999999999999


Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC---cE
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL---FF  149 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~  149 (200)
                      ...+..++..+|++|+|+|.++..+......|.....    .+.|+++|+||+|+.+..  ......++.+..++   .+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~v  157 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEA  157 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceE
Confidence            8888999999999999999998655555555544332    367899999999985421  12223445555565   38


Q ss_pred             EEecCCCCCCHHHHHHHHHHhccccC
Q 029029          150 METSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +++||++|.|++++|++|.+.+....
T Consensus       158 i~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       158 ILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             EEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            99999999999999999999886543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04163 Era Era subfamily

Probab=99.88  E-value=2e-21  Score=136.99  Aligned_cols=158  Identities=17%  Similarity=0.122  Sum_probs=104.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYY   80 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   80 (200)
                      ...+|+++|++|+|||||++++++..... .......+..............+.+|||||......        .....+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEe-ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            36789999999999999999999654321 111112222222222334457899999999654322        223357


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCC
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATN  159 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  159 (200)
                      ..+|++++|+|.+++.+. ....+...+...   +.|+++++||+|+........+....+.... ..+++++|++++.+
T Consensus        81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             HhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            889999999999987221 112233333332   5789999999998743333333344444444 36899999999999


Q ss_pred             HHHHHHHHHHhc
Q 029029          160 VNDIFYEIAKRL  171 (200)
Q Consensus       160 i~~~~~~l~~~~  171 (200)
                      +++++++|.+.+
T Consensus       157 ~~~l~~~l~~~~  168 (168)
T cd04163         157 VDELLEEIVKYL  168 (168)
T ss_pred             hHHHHHHHHhhC
Confidence            999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=1.8e-21  Score=141.48  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=106.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc----------ccccchh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLAP   77 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~   77 (200)
                      ....+|+++|++|+|||||+++|+++.+.....++.+.+........   ...+.+|||||..          .+.....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            45789999999999999999999976655556666665543333322   3679999999942          2233334


Q ss_pred             hhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHHHHHHHHHcCCcEEEe
Q 029029           78 MYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEEAQAYAQENGLFFMET  152 (200)
Q Consensus        78 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~  152 (200)
                      .++..   .+++++++|.+++...... .+...+..   .+.|+++++||+|+.+..+.  ..+.+.........+++++
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~  174 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF  174 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            44443   4678888988765332221 11122222   46789999999998653221  1223444444446789999


Q ss_pred             cCCCCCCHHHHHHHHHHhccc
Q 029029          153 SAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ||+++.|++++++.|.+.+.+
T Consensus       175 Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        175 SSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EcCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999887654

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=1.9e-21  Score=155.44  Aligned_cols=157  Identities=22%  Similarity=0.197  Sum_probs=106.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc--ccchhh------hhcC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--HSLAPM------YYRG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~~------~~~~   82 (200)
                      .+|+++|.+|+|||||+|+|++........+..+.+.....+...+ ...+.+|||+|..+.  ...+..      .+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            5899999999999999999997554322222222333333344433 236889999997431  122222      3578


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHH
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVN  161 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  161 (200)
                      +|++++|+|.+++.++..+..|...+......++|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999987777765555555444445789999999999864211   1111  1123455 5889999999999


Q ss_pred             HHHHHHHHhccc
Q 029029          162 DIFYEIAKRLPR  173 (200)
Q Consensus       162 ~~~~~l~~~~~~  173 (200)
                      +++++|.+.+..
T Consensus       352 eL~e~I~~~l~~  363 (426)
T PRK11058        352 LLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998854

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=3.1e-21  Score=137.03  Aligned_cols=154  Identities=20%  Similarity=0.198  Sum_probs=100.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEE--EEEEECCeEEEEEEEeCCCcccccc-----------ch
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERYHS-----------LA   76 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~   76 (200)
                      .++|+++|.+|+|||||+++|++...... ....+++...  .....+  +..+.+|||||......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHH
Confidence            57999999999999999999997543211 1122222222  223333  34588999999653311           01


Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-HHc----CCcEEE
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA-QEN----GLFFME  151 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~  151 (200)
                      ...+..+|++++|+|.+++.+.... .++..+..   .+.|+++++||+|+.+......+...... +..    ..++++
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            2245789999999999987654332 22333322   35899999999998764322222222222 222    367999


Q ss_pred             ecCCCCCCHHHHHHHHHHh
Q 029029          152 TSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~  170 (200)
                      +||+++.|++++++++.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1e-21  Score=158.16  Aligned_cols=164  Identities=20%  Similarity=0.174  Sum_probs=111.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc----ccc---hhhhhcC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSL---APMYYRG   82 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~   82 (200)
                      -..|+|+|.++||||||+++|.+....  ....++++..+....+......|++||+||....    ..+   .-..+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            357999999999999999999965432  2333444554555444444568999999996321    111   1224578


Q ss_pred             CcEEEEEEeCCCH----HHHHHHHHHHHHHHHhC-----------CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC
Q 029029           83 AAAAIIVYDITNQ----ASFERAKKWVQELQAQG-----------NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL  147 (200)
Q Consensus        83 ~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  147 (200)
                      +|++|+|+|.++.    +.+..+..+..++..+.           ..++|+++|+||+|+.+.... .+.........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            9999999999752    34444444444443321           246899999999998643322 2223333445578


Q ss_pred             cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          148 FFMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       148 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      +++++||+++.|+++++.+|.+.+.....
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999998877543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=6.4e-22  Score=161.11  Aligned_cols=159  Identities=23%  Similarity=0.257  Sum_probs=106.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccc----------cccch
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQER----------YHSLA   76 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~   76 (200)
                      ..++|+++|.+|+|||||+++|++.... ...+..|++.  ....+..++  ..+.+|||||...          +....
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence            4689999999999999999999976542 2233333333  333444444  4578999999532          11111


Q ss_pred             -hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHH-HHHHcCCcEEEe
Q 029029           77 -PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQA-YAQENGLFFMET  152 (200)
Q Consensus        77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~-~~~~~~~~~~~~  152 (200)
                       ..++..+|++|+|+|++++.++..+. ++..+..   .++|+++|+||+|+.+.....  ..++.. +.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             23468999999999999877665543 3444433   468999999999986432110  111211 122234689999


Q ss_pred             cCCCCCCHHHHHHHHHHhcccc
Q 029029          153 SAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      ||++|.|++++|+.+.+.+...
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998876543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.88  E-value=3.6e-22  Score=132.69  Aligned_cols=156  Identities=25%  Similarity=0.398  Sum_probs=127.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      .++.+.++|..+||||||++.+..+.+.....|+.|...    ..+......+.+||.||+..++..|..|.+.+++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            468899999999999999999998888888888887544    3344567889999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--------CcEEEecCCCCCC
Q 029029           89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--------LFFMETSAKTATN  159 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~  159 (200)
                      |+|..+++.++..+..+..+... .-.++|++|.+||.|+.+.  ....   .+..+.|        +-.|.+|+++..|
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~N  169 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVN  169 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCcc
Confidence            99999999888887777666554 3478999999999998653  2322   2233333        3478899999999


Q ss_pred             HHHHHHHHHHhccc
Q 029029          160 VNDIFYEIAKRLPR  173 (200)
Q Consensus       160 i~~~~~~l~~~~~~  173 (200)
                      ++-+..||+++-..
T Consensus       170 id~~~~Wli~hsk~  183 (186)
T KOG0075|consen  170 IDITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999987543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=4.4e-21  Score=155.07  Aligned_cols=160  Identities=19%  Similarity=0.194  Sum_probs=106.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch-----------
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-----------   76 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   76 (200)
                      ...++|+++|.+++|||||+++|++.... ...+..+++.......+...+..+.+|||||..+.....           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            34689999999999999999999965432 122334444433333332233479999999975443221           


Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-HH----cCCcEEE
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA-QE----NGLFFME  151 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~~  151 (200)
                      ..++..+|++|+|+|.+++.+.... .++..+..   .+.|+++|+||+|+.+.. ...+...... ..    ..+++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEE
Confidence            2357899999999999987555443 23333333   468999999999987211 1122222222 11    2468999


Q ss_pred             ecCCCCCCHHHHHHHHHHhccc
Q 029029          152 TSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      +||++|.|++++|+++.+.+..
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999886654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.87  E-value=2.9e-21  Score=129.59  Aligned_cols=167  Identities=25%  Similarity=0.494  Sum_probs=144.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .+.-.+||.++|++..|||||+-...++.+.+.+..+.|+.+..+++.+.+....+.+||.+|++++....+..-.++-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            45668999999999999999999999888888888899999999999999999999999999999999888888899999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-----CCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-----VTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ++++||.+.+.+++.+.+|+..-+..+...+|+ +|++|.|.--.-.     .-...++.+++..+.++|.+|+.++.|+
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv  174 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV  174 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence            999999999999999999999998887666665 6899999642211     1123478888899999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 029029          161 NDIFYEIAKRLPR  173 (200)
Q Consensus       161 ~~~~~~l~~~~~~  173 (200)
                      +.+|..+..++-.
T Consensus       175 ~KIFK~vlAklFn  187 (205)
T KOG1673|consen  175 QKIFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999977766543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=1.8e-20  Score=154.91  Aligned_cols=155  Identities=18%  Similarity=0.220  Sum_probs=107.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+..++ ...+.||||||++.+...+...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            4678999999999999999999987665443322222222223333322 227999999999999988888899999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC---------CcEEEecCCCCC
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG---------LFFMETSAKTAT  158 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~  158 (200)
                      +|+|.++.... +..+.+....   ..++|+++++||+|+.+.   ..+.........+         .+++++||++|.
T Consensus       164 LVVda~dgv~~-qT~e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMP-QTIEAISHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCH-hHHHHHHHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            99998863211 1112222222   246899999999998542   3333433333322         469999999999


Q ss_pred             CHHHHHHHHHHh
Q 029029          159 NVNDIFYEIAKR  170 (200)
Q Consensus       159 ~i~~~~~~l~~~  170 (200)
                      |++++++++...
T Consensus       237 GI~eLl~~I~~~  248 (587)
T TIGR00487       237 GIDELLDMILLQ  248 (587)
T ss_pred             ChHHHHHhhhhh
Confidence            999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=4.8e-21  Score=137.36  Aligned_cols=148  Identities=17%  Similarity=0.216  Sum_probs=98.6

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccch
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLA   76 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~   76 (200)
                      .....+|+++|++|+|||||+++|++..+.....+..+.+........++   .+.+|||||...          +....
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            36688999999999999999999997654444555665555444333332   699999999532          22223


Q ss_pred             hhhhc---CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHHcC--CcE
Q 029029           77 PMYYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQENG--LFF  149 (200)
Q Consensus        77 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~  149 (200)
                      ..++.   .++++++|+|.+++.+.... .++..+..   .++|+++++||+|+.....  ...+++++.+...+  .++
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v  167 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV  167 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence            33444   35899999999875443332 22233322   3689999999999864321  12344555555543  479


Q ss_pred             EEecCCCCCCHH
Q 029029          150 METSAKTATNVN  161 (200)
Q Consensus       150 ~~~Sa~~~~~i~  161 (200)
                      +++||++|+|++
T Consensus       168 ~~~Sa~~g~gi~  179 (179)
T TIGR03598       168 QLFSSLKKTGID  179 (179)
T ss_pred             EEEECCCCCCCC
Confidence            999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=2.7e-20  Score=157.92  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=120.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc----------hhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------APM   78 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~   78 (200)
                      +.++|+++|++|||||||+|+|++...  ......|++...+...+...+.++.+|||||..++...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            357899999999999999999986543  45566888888887777777889999999998765432          112


Q ss_pred             hh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029           79 YY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT  156 (200)
Q Consensus        79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (200)
                      ++  ..+|++++|+|.++.+..   ..+...+.+   .++|+++++||+|+.+.+.. ..+.+++.+..+++++++||.+
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence            32  479999999999885432   223344433   36899999999998755444 3457788888999999999999


Q ss_pred             CCCHHHHHHHHHHhcc
Q 029029          157 ATNVNDIFYEIAKRLP  172 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~  172 (200)
                      +.|++++++.+.+...
T Consensus       153 g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        153 GRGIEALKLAIDRHQA  168 (772)
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999887653

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.2e-21  Score=133.70  Aligned_cols=161  Identities=25%  Similarity=0.306  Sum_probs=123.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCccc--------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM   78 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   78 (200)
                      ....+.|+|+|+.++|||||+.++-. .+.        +...++.|..    ..+++-....+.|||..|++..+.+|..
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt-~~~~~~~~l~~~ki~~tvgLn----ig~i~v~~~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKT-DFSKAYGGLNPSKITPTVGLN----IGTIEVCNAPLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHH-HHHhhhcCCCHHHeeccccee----ecceeeccceeEEEEcCChHHHHHHHHH
Confidence            34578899999999999999998752 222        2223333322    2222223678999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH------HcCCcEEE
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ------ENGLFFME  151 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~  151 (200)
                      |+..+|++|+++|+++++.++.....++.+.. ....+.|+++.+||.|+.+.  ....+++..+.      +...++.+
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~p  166 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQP  166 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCcccc
Confidence            99999999999999999999888766665544 34579999999999998653  34444444443      23457999


Q ss_pred             ecCCCCCCHHHHHHHHHHhcccc
Q 029029          152 TSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      +||.+|+||++.+.|+...+.++
T Consensus       167 vSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  167 VSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             chhhhcccHHHHHHHHHHHHhhc
Confidence            99999999999999999999887

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=1.8e-20  Score=155.34  Aligned_cols=156  Identities=19%  Similarity=0.204  Sum_probs=111.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCc---ccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      +.|+++|+.++|||||+++|++..   +..+..+..+.+.....+..++  ..+.+||+||++.+...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999998532   2222333333333333333333  78999999999988887778889999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC--CHHHHHHHHHHc----CCcEEEecCCCC
Q 029029           88 IVYDITN---QASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV--TAEEAQAYAQEN----GLFFMETSAKTA  157 (200)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  157 (200)
                      +|+|.++   +++.+.    +..+..   .++| +++++||+|+.+....  ..+++..+.+..    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~eh----l~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEH----LAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHH----HHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999997   344333    333332   3566 9999999998754322  123445555443    578999999999


Q ss_pred             CCHHHHHHHHHHhccccC
Q 029029          158 TNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~  175 (200)
                      .|++++++++.+.+....
T Consensus       152 ~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       152 QGIGELKKELKNLLESLD  169 (581)
T ss_pred             CCchhHHHHHHHHHHhCC
Confidence            999999999988766544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.86  E-value=2.3e-21  Score=140.11  Aligned_cols=160  Identities=20%  Similarity=0.253  Sum_probs=107.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcc----------------cCcceeeEEEEEEEE--CCeEEEEEEEeCCCcc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------------ESTIGAAFFSQTLAV--NDATVKFEIWDTAGQE   70 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~   70 (200)
                      +.++|+++|+.++|||||+++|+........                ....+.+........  ......+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4579999999999999999999864321100                000112222222222  3556789999999999


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHH-HHHHHc---
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQ-AYAQEN---  145 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~---  145 (200)
                      .+.......+..+|++|+|+|..+.-. ....+.+..+...   ++|+++++||+|+...+. ...++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccc-ccccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            888888888999999999999987522 2334444555444   678999999999862110 0111122 232332   


Q ss_pred             ---CCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          146 ---GLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       146 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                         .++++++||.+|.|++++++.|.+.++
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence               357999999999999999999998775

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.3e-20  Score=152.30  Aligned_cols=153  Identities=21%  Similarity=0.186  Sum_probs=106.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhhhcCC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYRGA   83 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~   83 (200)
                      +|+++|.+|+|||||+|+|++.. ........|++...........+..+.+|||||..        .+......++..+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            58999999999999999999654 22334445554433333333334579999999963        3334455567899


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHH
Q 029029           84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVND  162 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  162 (200)
                      |++++|+|..++.+... ..+...+..   .++|+++|+||+|+.+....    ... +...++ .++++||.+|.|+++
T Consensus        80 d~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~  150 (429)
T TIGR03594        80 DVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGD  150 (429)
T ss_pred             CEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHH
Confidence            99999999987533222 122222332   36899999999998653321    122 345566 699999999999999


Q ss_pred             HHHHHHHhcccc
Q 029029          163 IFYEIAKRLPRV  174 (200)
Q Consensus       163 ~~~~l~~~~~~~  174 (200)
                      +++++.+.+...
T Consensus       151 ll~~i~~~l~~~  162 (429)
T TIGR03594       151 LLDAILELLPEE  162 (429)
T ss_pred             HHHHHHHhcCcc
Confidence            999999988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=3.8e-20  Score=155.24  Aligned_cols=157  Identities=21%  Similarity=0.256  Sum_probs=110.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcce--eeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG--AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .+..+|+|+|+.++|||||+++|....+........+  ...+......++....+.||||||++.+...+..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4678999999999999999999987655432222111  12223333334456899999999999999999889999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-------HHcC--CcEEEecCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA-------QENG--LFFMETSAKT  156 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~  156 (200)
                      +|+|+|+.+....... +.+..+.   ..++|+++++||+|+.+.   ..+.+....       ..++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~-E~I~~~k---~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTI-EAINYIQ---AANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhH-HHHHHHH---hcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999873221111 1222222   256899999999998642   222222222       2223  6899999999


Q ss_pred             CCCHHHHHHHHHHhc
Q 029029          157 ATNVNDIFYEIAKRL  171 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~  171 (200)
                      |.|+++++++|....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999998764

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.1e-21  Score=132.94  Aligned_cols=171  Identities=29%  Similarity=0.546  Sum_probs=146.7

Q ss_pred             CCCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q 029029            1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   80 (200)
Q Consensus         1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   80 (200)
                      |...+.....++++++|..|.||||++++.+.+.+...+.++.|+..+.-...-+...+++..|||.|++.+......++
T Consensus         1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy   80 (216)
T KOG0096|consen    1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY   80 (216)
T ss_pred             CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence            45555556789999999999999999999999999999999999998887776666679999999999999999999999


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      -++.+.|++||+..+-++.++.+|...+.+.. .++|+++++||.|.....  .......+-...++.|+++||+.+.|.
T Consensus        81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nf  157 (216)
T KOG0096|consen   81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNF  157 (216)
T ss_pred             EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccc
Confidence            99999999999999999999999999988874 459999999999975432  222334445567889999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 029029          161 NDIFYEIAKRLPRV  174 (200)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (200)
                      ..-|-|+++++...
T Consensus       158 ekPFl~LarKl~G~  171 (216)
T KOG0096|consen  158 ERPFLWLARKLTGD  171 (216)
T ss_pred             ccchHHHhhhhcCC
Confidence            99999999988764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=1.4e-20  Score=156.28  Aligned_cols=146  Identities=18%  Similarity=0.159  Sum_probs=105.6

Q ss_pred             CCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh--cCCcEEEE
Q 029029           17 GDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYY--RGAAAAII   88 (200)
Q Consensus        17 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   88 (200)
                      |++|+|||||+|+|.+....  .....|++.......+...+..+++|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~--v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT--VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe--ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999976543  3334455554444333333456899999998876543      23333  37899999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |+|.++.+..   ..+..++..   .++|+++++||+|+.+.+... .+.+.+.+..+++++++||++|.|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999874321   222233322   468999999999987655444 346778888899999999999999999999998


Q ss_pred             Hhc
Q 029029          169 KRL  171 (200)
Q Consensus       169 ~~~  171 (200)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd00880 Era_like Era (E

Probab=99.85  E-value=1.4e-20  Score=131.56  Aligned_cols=152  Identities=22%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             EECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCccccccc-------hhhhhcCCcEE
Q 029029           15 LLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSL-------APMYYRGAAAA   86 (200)
Q Consensus        15 vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~   86 (200)
                      ++|++|+|||||+++|.+..... .....+.+.......... ....+.+||+||.......       ...++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999998644331 222222222222222221 1568999999997655433       33477899999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH---HHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE---EAQAYAQENGLFFMETSAKTATNVNDI  163 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (200)
                      ++++|..++....... +.....   ..+.|+++++||.|+.........   .........+.+++++||.++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876554433 233332   357899999999998754322221   112223345678999999999999999


Q ss_pred             HHHHHHhc
Q 029029          164 FYEIAKRL  171 (200)
Q Consensus       164 ~~~l~~~~  171 (200)
                      ++++.+.+
T Consensus       156 ~~~l~~~~  163 (163)
T cd00880         156 REALIEAL  163 (163)
T ss_pred             HHHHHhhC
Confidence            99998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=5.7e-20  Score=134.14  Aligned_cols=118  Identities=18%  Similarity=0.301  Sum_probs=87.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC-cEEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA-AAAIIVY   90 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~   90 (200)
                      +|+++|++|||||||+++|..+.+.....++ .................+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999977665443322 1111111111123457799999999999988888889998 9999999


Q ss_pred             eCCCH-HHHHHHHHHHHHHHHh---CCCCCeEEEEEeCcCccCC
Q 029029           91 DITNQ-ASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        91 d~~~~-~s~~~~~~~~~~i~~~---~~~~~~~ivv~nK~D~~~~  130 (200)
                      |+.+. .++.....|+..+...   ...++|+++++||+|+...
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            99987 6677776666554332   2368999999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=6.9e-20  Score=152.21  Aligned_cols=162  Identities=19%  Similarity=0.226  Sum_probs=114.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc--cC-----c------ccCcceeeEEEEEEEE-----CCeEEEEEEEeCCCc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IE-----F------QESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQ   69 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~   69 (200)
                      .+-.+|+++|+.++|||||+++|+...-  ..     .      .....|.+.......+     ++..+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            3456899999999999999999986321  10     0      0112234443333222     455789999999999


Q ss_pred             cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-
Q 029029           70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-  148 (200)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  148 (200)
                      .++...+..++..+|++|+|+|.++.........|....    ..+.|+++|+||+|+.+..  .......+....++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence            999888889999999999999999864444444443322    1367899999999985422  122233444445554 


Q ss_pred             --EEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          149 --FMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       149 --~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                        ++++||++|.|+++++++|.+.+....
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence              899999999999999999999886553

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=7.4e-23  Score=141.15  Aligned_cols=181  Identities=31%  Similarity=0.537  Sum_probs=152.6

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccccccchhhhhcC
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHSLAPMYYRG   82 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~   82 (200)
                      +.++..-++++|+|..|+|||+++.+.....+...+..++|+++..+....+.. .+++++||..|++++..+..-+++.
T Consensus        19 p~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyke   98 (229)
T KOG4423|consen   19 PKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKE   98 (229)
T ss_pred             CchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecC
Confidence            344567789999999999999999999988888888899999988877777543 4689999999999999999999999


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCcCccCCCCC-CHHHHHHHHHHcCC-cEEEecCCC
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDARKV-TAEEAQAYAQENGL-FFMETSAKT  156 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~Sa~~  156 (200)
                      +++..+|||++...+|+...+|.+.+..-    .....|+++..||+|+...... .......+.+++++ ..+++|++.
T Consensus        99 a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke  178 (229)
T KOG4423|consen   99 AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE  178 (229)
T ss_pred             CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence            99999999999999999999999987663    2356789999999998653322 24667788888887 599999999


Q ss_pred             CCCHHHHHHHHHHhccccCCCCCCCCce
Q 029029          157 ATNVNDIFYEIAKRLPRVQPAPNPSGMV  184 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~  184 (200)
                      +.++.|+-..+++++.....++..+.-+
T Consensus       179 nkni~Ea~r~lVe~~lvnd~q~~~s~~~  206 (229)
T KOG4423|consen  179 NKNIPEAQRELVEKILVNDEQPIKSSAV  206 (229)
T ss_pred             ccChhHHHHHHHHHHHhhccCCcccccc
Confidence            9999999999999999887666655444

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=2.2e-20  Score=151.22  Aligned_cols=147  Identities=22%  Similarity=0.201  Sum_probs=100.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYY   80 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   80 (200)
                      .+|+++|.+|+|||||+++|.+.... ......+++.  .......++  ..+.+|||||...        .......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            47999999999999999999965531 2223333333  233333333  7899999999876        222334567


Q ss_pred             cCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCC
Q 029029           81 RGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTA  157 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  157 (200)
                      ..+|++|+|+|..++.+..  .+..|+.   .   .++|+++|+||+|+.+.    ......+ ...++. ++++||++|
T Consensus        79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g  147 (435)
T PRK00093         79 EEADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHG  147 (435)
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence            8999999999998753322  2233333   2   26899999999996431    1222222 345654 899999999


Q ss_pred             CCHHHHHHHHHHhc
Q 029029          158 TNVNDIFYEIAKRL  171 (200)
Q Consensus       158 ~~i~~~~~~l~~~~  171 (200)
                      .|++++++++.+..
T Consensus       148 ~gv~~l~~~I~~~~  161 (435)
T PRK00093        148 RGIGDLLDAILEEL  161 (435)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998844

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.84  E-value=1.1e-19  Score=153.63  Aligned_cols=152  Identities=19%  Similarity=0.241  Sum_probs=107.3

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+...|+|+|+.++|||||+++|....+.......++.+.....+..+  +..++||||||++.|...+...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            4678899999999999999999998765543322222112222223333  46799999999999998888888999999


Q ss_pred             EEEEeCCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH-------HHHcC--CcEEEecC
Q 029029           87 IIVYDITNQ---ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY-------AQENG--LFFMETSA  154 (200)
Q Consensus        87 i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa  154 (200)
                      |+|+|..+.   ++.+.    +...   ...++|+++++||+|+.+.   ..+.....       ...++  ++++++||
T Consensus       365 ILVVdAddGv~~qT~e~----i~~a---~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA  434 (787)
T PRK05306        365 VLVVAADDGVMPQTIEA----INHA---KAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSA  434 (787)
T ss_pred             EEEEECCCCCCHhHHHH----HHHH---HhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence            999999873   33222    2222   2357899999999998542   22222211       22233  68999999


Q ss_pred             CCCCCHHHHHHHHHHh
Q 029029          155 KTATNVNDIFYEIAKR  170 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~  170 (200)
                      ++|.|+++++++|...
T Consensus       435 ktG~GI~eLle~I~~~  450 (787)
T PRK05306        435 KTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCchHHHHhhhhh
Confidence            9999999999998764

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.84  E-value=2.8e-20  Score=123.00  Aligned_cols=159  Identities=23%  Similarity=0.269  Sum_probs=120.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+++||+++|..++|||||+..|. ...+....|+.|........   ...+.+.+||.+|+...+..|..|+.+.|++
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~-sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLK-SEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHc-cCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence            4679999999999999999999998 44455566777744333222   3458899999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-----CcEEEecCCCCCCH
Q 029029           87 IIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-----LFFMETSAKTATNV  160 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i  160 (200)
                      |||+|+++.-.|+++...+-++.. ......|+.+.+||.|+...  ...++...-+...+     ..+-++||.+++|+
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~  167 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGS  167 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence            999999998888887555544443 44478999999999998543  22322222222222     24679999999999


Q ss_pred             HHHHHHHHHhc
Q 029029          161 NDIFYEIAKRL  171 (200)
Q Consensus       161 ~~~~~~l~~~~  171 (200)
                      ..-.+|++...
T Consensus       168 ~dg~~wv~sn~  178 (185)
T KOG0074|consen  168 TDGSDWVQSNP  178 (185)
T ss_pred             cCcchhhhcCC
Confidence            99999987643

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.9e-21  Score=127.95  Aligned_cols=163  Identities=22%  Similarity=0.302  Sum_probs=120.3

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      .+++.+|++.|..|+||||++.++..+.... ..|++|...    .++..++.++++||..|+...+..|+.|+.+.|.+
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceE
Confidence            3489999999999999999998887555443 345655333    33445788999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCC---CCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK---VTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      |||+|.++++...... +++..+.+..-.+..+++++||.|......   +.........+..-+.+|++||.+|+|++.
T Consensus        90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999999987666553 344444444345677899999999754211   111111111223335799999999999999


Q ss_pred             HHHHHHHhcccc
Q 029029          163 IFYEIAKRLPRV  174 (200)
Q Consensus       163 ~~~~l~~~~~~~  174 (200)
                      .++||.+-+.+.
T Consensus       170 ~~DWL~~~l~~~  181 (182)
T KOG0072|consen  170 AMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHhcc
Confidence            999999987653

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=4.1e-20  Score=144.61  Aligned_cols=174  Identities=21%  Similarity=0.216  Sum_probs=121.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc---------cchhhhhc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPMYYR   81 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   81 (200)
                      ..|+++|.||+|||||.|+|+ +.-.......+|++.........-.+..|.++||+|.+...         ......+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~-g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLT-GRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHh-CCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            579999999999999999999 55556677888888777665555555679999999966322         22334577


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCH
Q 029029           82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNV  160 (200)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  160 (200)
                      .||++|||+|....-+-.. ....+.++ .  .++|+++|+||+|-.     ..+.....+-.+|. ..+.+||.+|.|+
T Consensus        83 eADvilfvVD~~~Git~~D-~~ia~~Lr-~--~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~Gi  153 (444)
T COG1160          83 EADVILFVVDGREGITPAD-EEIAKILR-R--SKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRGI  153 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHH-HHHHHHHH-h--cCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccCH
Confidence            8999999999987422111 12222233 2  468999999999953     22223333345565 5899999999999


Q ss_pred             HHHHHHHHHhcc-ccCCCC----CCCCceeccCCCCCCC
Q 029029          161 NDIFYEIAKRLP-RVQPAP----NPSGMVLMDRPGERTA  194 (200)
Q Consensus       161 ~~~~~~l~~~~~-~~~~~~----~~~~~~~~~~~~~~~~  194 (200)
                      .++++++.+.+. ......    .+-.+.+.-+|+-.+.
T Consensus       154 ~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKS  192 (444)
T COG1160         154 GDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKS  192 (444)
T ss_pred             HHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCch
Confidence            999999999983 222222    2355666777776654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=5.9e-20  Score=148.06  Aligned_cols=156  Identities=17%  Similarity=0.153  Sum_probs=105.8

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhC--cccC---------------------------cccCcceeeEEEEEEEEC
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKG--QFIE---------------------------FQESTIGAAFFSQTLAVN   55 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~   55 (200)
                      +.....++|+++|+.++|||||+++|+..  ....                           ......|.+.......+.
T Consensus         2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~   81 (426)
T TIGR00483         2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE   81 (426)
T ss_pred             CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence            44567899999999999999999999852  1110                           001122455555555566


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029           56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDARKV  133 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~  133 (200)
                      .....+.+||+||++.+.......+..+|++++|+|.+++++...  ...++......  ...++++++||+|+.+....
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~  159 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEE  159 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHH
Confidence            667899999999998876655566789999999999998743211  11222222222  23579999999998642211


Q ss_pred             ----CHHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q 029029          134 ----TAEEAQAYAQENG-----LFFMETSAKTATNVND  162 (200)
Q Consensus       134 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (200)
                          ..+++..+++..+     ++++++||++|.|+.+
T Consensus       160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                1234555666554     5799999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=1.2e-19  Score=154.28  Aligned_cols=154  Identities=25%  Similarity=0.203  Sum_probs=106.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPMYY   80 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   80 (200)
                      ...+|+++|.+++|||||+|+|++... ....+..|++...........+..+.+|||||.+.        +......++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            357899999999999999999996543 33445566665554444333356799999999753        223334467


Q ss_pred             cCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCC
Q 029029           81 RGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTAT  158 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (200)
                      ..+|++|+|+|.++..  ... ..|...+..   .++|+++|+||+|+....    .....+. ..+. ..+++||++|.
T Consensus       353 ~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~  422 (712)
T PRK09518        353 SLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGR  422 (712)
T ss_pred             HhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCC
Confidence            8999999999998642  122 234444433   578999999999975421    1122221 2233 35799999999


Q ss_pred             CHHHHHHHHHHhccc
Q 029029          159 NVNDIFYEIAKRLPR  173 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~  173 (200)
                      |++++++++++.+..
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999998865

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.83  E-value=3.2e-19  Score=132.67  Aligned_cols=154  Identities=18%  Similarity=0.144  Sum_probs=100.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhhcCC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGA   83 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~   83 (200)
                      .+|+++|++|+|||||+++|.+.....  .....++.......+...+..+++||+||.....       ......++++
T Consensus         1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           1 ARVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            379999999999999999999654321  1112222222222222345689999999974322       1223467899


Q ss_pred             cEEEEEEeCCCHH-HHHHHHHHHHH----------------------------------------H-H------------
Q 029029           84 AAAIIVYDITNQA-SFERAKKWVQE----------------------------------------L-Q------------  109 (200)
Q Consensus        84 d~~i~v~d~~~~~-s~~~~~~~~~~----------------------------------------i-~------------  109 (200)
                      |++++|+|.++++ ....+.+.++.                                        + .            
T Consensus        79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999998754 23333333320                                        0 0            


Q ss_pred             ------------HhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          110 ------------AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       110 ------------~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                                  ..+...+|+++|+||+|+..     .++...++..  ..++++||+++.|++++|+.+.+.+.-
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~~  227 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLGL  227 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhCc
Confidence                        11124579999999999843     3344444433  458999999999999999999987653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=1.2e-19  Score=147.00  Aligned_cols=159  Identities=19%  Similarity=0.194  Sum_probs=106.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------h
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-----------A   76 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   76 (200)
                      ...++|+++|.+|+|||||+++|++... ....+..|++.......+...+..+.+|||||.......           .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            3579999999999999999999996542 123344455555444444334567899999996432211           1


Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH-HHHH----HcCCcEEE
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ-AYAQ----ENGLFFME  151 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~~  151 (200)
                      ..++..+|++|+|+|.+++.+.... .++..+..   .++|+++++||+|+.+...  .++.. .+..    ...+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            2356789999999999987554432 23333333   3689999999999863321  11111 1111    23468999


Q ss_pred             ecCCCCCCHHHHHHHHHHhccc
Q 029029          152 TSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      +||++|.|++++++.+.+....
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998775543

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=5.2e-19  Score=122.44  Aligned_cols=163  Identities=25%  Similarity=0.378  Sum_probs=121.1

Q ss_pred             CCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcc-----cCcce---eeEEEEEEEEC-CeEEEEEEEeCCCccccc
Q 029029            3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----ESTIG---AAFFSQTLAVN-DATVKFEIWDTAGQERYH   73 (200)
Q Consensus         3 ~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-----~~~~~---~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~   73 (200)
                      .-.+.....||+|+|+.++||||+++++.........     ...-+   ++......... +.+..+.+++||||+++.
T Consensus         3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~   82 (187)
T COG2229           3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK   82 (187)
T ss_pred             cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH
Confidence            3456778999999999999999999999865431110     00001   11111111111 234689999999999999


Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc--CCcEEE
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN--GLFFME  151 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~  151 (200)
                      .+|..+++++.++|+++|.+.+..+ +....+..+....  .+|+++.+||.|+...  .+.++++++.+..  .+++++
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~  157 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIE  157 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceee
Confidence            9999999999999999999998877 4444444444432  2899999999998653  5777788877766  789999


Q ss_pred             ecCCCCCCHHHHHHHHHHh
Q 029029          152 TSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~  170 (200)
                      .+|.++++..+.++.+...
T Consensus       158 ~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         158 IDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eecccchhHHHHHHHHHhh
Confidence            9999999999999988776

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.83  E-value=1.1e-19  Score=145.41  Aligned_cols=165  Identities=16%  Similarity=0.182  Sum_probs=107.7

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccC---ccc--CcceeeEEE----------------EEEEECC------eEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE---FQE--STIGAAFFS----------------QTLAVND------ATV   59 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~---~~~--~~~~~~~~~----------------~~~~~~~------~~~   59 (200)
                      +++.++|+++|+.++|||||+++|.+.....   +..  -+....+..                .....++      ...
T Consensus         1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            3678999999999999999999997432111   100  011111100                0000011      146


Q ss_pred             EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHH
Q 029029           60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEE  137 (200)
Q Consensus        60 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~  137 (200)
                      .+.+||+||++++...+......+|++++|+|.+++....+..+.+..+...  ...|+++++||+|+.+....  ..++
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            7999999999998877777788899999999999643122233334433333  23468999999998653221  1233


Q ss_pred             HHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          138 AQAYAQEN---GLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       138 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      +..+....   +++++++||++|.|+++++++|...+..
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence            44444332   5689999999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.82  E-value=3.1e-19  Score=126.07  Aligned_cols=151  Identities=20%  Similarity=0.263  Sum_probs=99.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccchhhhhc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAPMYYR   81 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   81 (200)
                      .|+++|.+|+|||||++.+.++.......++.+.+........+.   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996666555666665555444444433   899999999532          2233333333


Q ss_pred             ---CCcEEEEEEeCCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHH--HcCCcEEEe
Q 029029           82 ---GAAAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQ--ENGLFFMET  152 (200)
Q Consensus        82 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~  152 (200)
                         ..+++++++|......  ...+..|+..      .+.|+++++||+|+.......  ........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               4578889999876522  1222333322      247899999999985432111  122222222  344579999


Q ss_pred             cCCCCCCHHHHHHHHHHhc
Q 029029          153 SAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ||+++.++++++++|.+.+
T Consensus       152 Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         152 SSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             ecCCCCCHHHHHHHHHHhC
Confidence            9999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.82  E-value=2.5e-19  Score=144.48  Aligned_cols=156  Identities=21%  Similarity=0.187  Sum_probs=104.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCccc--C---------------------------cccCcceeeEEEEEEEECCe
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------------------------FQESTIGAAFFSQTLAVNDA   57 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (200)
                      ..+.++|+++|++++|||||+++|+...-.  .                           ......|++.......++..
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            456799999999999999999999843211  0                           01113455666666666667


Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----  132 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----  132 (200)
                      .+.+.+|||||++.+.......+..+|++++|+|.+++... .....++......  ...|+++++||+|+.+...    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            78999999999987765555567889999999999873112 1122233333332  1246899999999864211    


Q ss_pred             CCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHH
Q 029029          133 VTAEEAQAYAQENG-----LFFMETSAKTATNVNDIF  164 (200)
Q Consensus       133 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  164 (200)
                      ...+++..+.+..+     ++++++||++|.|+++.+
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            11234455555444     469999999999998743

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=4.1e-19  Score=147.25  Aligned_cols=161  Identities=17%  Similarity=0.230  Sum_probs=117.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC--cccCc------------ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG--QFIEF------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA   76 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   76 (200)
                      .+|+|+|+.++|||||+++|+..  .+...            .....|.+.......+...++.+.+|||||+.++...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            37999999999999999999862  22111            11223555655555555667899999999999998888


Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC-CHHHHHHHHH-------HcCCc
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV-TAEEAQAYAQ-------ENGLF  148 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  148 (200)
                      ..++..+|++++|+|..+. ...+...|+......   ++|+++++||+|+.+.+.. ..+++..++.       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            8899999999999999863 234445666665543   6789999999998643211 1233333332       23568


Q ss_pred             EEEecCCCCC----------CHHHHHHHHHHhccccC
Q 029029          149 FMETSAKTAT----------NVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       149 ~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~  175 (200)
                      ++.+||++|.          |+..+|+.+++.+....
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence            9999999996          79999999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=2.2e-19  Score=131.65  Aligned_cols=149  Identities=26%  Similarity=0.256  Sum_probs=95.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCc-----------------------------ccCcceeeEEEEEEEECCeEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEF-----------------------------QESTIGAAFFSQTLAVNDATVKFE   62 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   62 (200)
                      ||+++|++|+|||||+++|+...-.-.                             .....|++.......+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999986322100                             000123344444444444566899


Q ss_pred             EEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC----CHHHH
Q 029029           63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV----TAEEA  138 (200)
Q Consensus        63 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~----~~~~~  138 (200)
                      +|||||+..+...+...+..+|++|+|+|.+++.. .........+...  ...++++|+||+|+.+....    ...++
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            99999998776556667889999999999987521 1222222222222  12357889999998642211    11234


Q ss_pred             HHHHHHcCC---cEEEecCCCCCCHHHH
Q 029029          139 QAYAQENGL---FFMETSAKTATNVNDI  163 (200)
Q Consensus       139 ~~~~~~~~~---~~~~~Sa~~~~~i~~~  163 (200)
                      ..+.+..+.   +++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            444555553   5899999999999853

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=4.7e-19  Score=139.09  Aligned_cols=155  Identities=20%  Similarity=0.190  Sum_probs=117.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhh--------hh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM--------YY   80 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------~~   80 (200)
                      .-++++++|.||+|||||+|.|+ +.-.......+|++.......++-.++++.+.||+|..+-....+.        .+
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~-~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALL-GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHh-cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            46899999999999999999999 5556667888899988888888888899999999997544333322        46


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ..||++++|+|.+.+.+-.. ...+.    ....++|+++|.||.|+........     .....+.+++.+|++++.|+
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d-~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         295 EEADLVLFVLDASQPLDKED-LALIE----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEGL  364 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhh-HHHHH----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccCH
Confidence            89999999999998622111 12222    2235789999999999976533211     11223446899999999999


Q ss_pred             HHHHHHHHHhcccc
Q 029029          161 NDIFYEIAKRLPRV  174 (200)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (200)
                      +.+.+.|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999888776

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=5.3e-19  Score=141.48  Aligned_cols=166  Identities=16%  Similarity=0.184  Sum_probs=104.2

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcc-cCcceeeEEEE----EE----------------EEC--C----eE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQ----TL----------------AVN--D----AT   58 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~----~~----------------~~~--~----~~   58 (200)
                      +..+.++|+++|+.++|||||+.+|.+....... ...-|.+....    ..                ..+  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            4567899999999999999999999642111100 00111221111    00                000  0    13


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HH
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AE  136 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~  136 (200)
                      ..+.+|||||++.+..........+|++++|+|.+++.........+..+...  ...|+++++||+|+.+.....  .+
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence            67999999999877655555556789999999999642111112222223222  224689999999986543221  23


Q ss_pred             HHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          137 EAQAYAQEN---GLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       137 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ++..+.+..   +.+++++||++|.|+++++++|.+.+..
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            344444332   4689999999999999999999987754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=6.9e-19  Score=149.58  Aligned_cols=157  Identities=20%  Similarity=0.204  Sum_probs=103.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceee--EEEEEEEECCeEEEEEEEeCCCcccc----------ccc-
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERY----------HSL-   75 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~-   75 (200)
                      ...+|+++|.+|+|||||+++|++.... ...+..|++  .......+++  ..+.+|||||....          ... 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERA-VVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccc-ccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHH
Confidence            3589999999999999999999976531 112223333  3233344444  45779999996421          111 


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-H----cCCcEE
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-E----NGLFFM  150 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~  150 (200)
                      ....+..+|++++|+|.+++.+..... ++..+..   .++|+++|+||+|+.+...  .+....... .    ...+++
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence            122367899999999999876665543 3333333   4689999999999865321  122222221 1    134678


Q ss_pred             EecCCCCCCHHHHHHHHHHhcccc
Q 029029          151 ETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      .+||++|.|++++++.+.+.+...
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998877653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.81  E-value=1.8e-18  Score=125.18  Aligned_cols=147  Identities=17%  Similarity=0.166  Sum_probs=99.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL   75 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   75 (200)
                      .++|+++|+.++|||||+++|++....              .......|.+.......++.....+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            589999999999999999999863110              001112345555555556666778999999999887776


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHc-----C
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQEN-----G  146 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~  146 (200)
                      ....+..+|++++|+|....-. ......+..+...   ++| +++++||+|+......   ..+++..+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            7777889999999999986421 2233444444443   455 7789999998532221   112344444443     3


Q ss_pred             CcEEEecCCCCCCH
Q 029029          147 LFFMETSAKTATNV  160 (200)
Q Consensus       147 ~~~~~~Sa~~~~~i  160 (200)
                      ++++++||.+|.++
T Consensus       158 v~iipiSa~~g~n~  171 (195)
T cd01884         158 TPIVRGSALKALEG  171 (195)
T ss_pred             CeEEEeeCccccCC
Confidence            67999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.2e-18  Score=142.18  Aligned_cols=159  Identities=17%  Similarity=0.126  Sum_probs=122.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh--
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------APMYY--   80 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--   80 (200)
                      +..+|+++|+||+|||||.|+|++...  ...-.+|++...++......+..+++.|+||...+...      .+.++  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            356799999999999999999996443  35567789999999888888888999999996443322      22233  


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ..+|++|-|+|.++.+..-.   ..-++.+   -+.|++++.|++|..+.+.+.. +.+++.+..|+|++++||++|.|+
T Consensus        80 ~~~D~ivnVvDAtnLeRnLy---ltlQLlE---~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLY---LTLQLLE---LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCCCEEEEEcccchHHHHHH---HHHHHHH---cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCH
Confidence            46799999999988643211   1122222   3678999999999887655544 377888899999999999999999


Q ss_pred             HHHHHHHHHhccccCC
Q 029029          161 NDIFYEIAKRLPRVQP  176 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~~  176 (200)
                      ++++..+.+.......
T Consensus       153 ~~l~~~i~~~~~~~~~  168 (653)
T COG0370         153 EELKRAIIELAESKTT  168 (653)
T ss_pred             HHHHHHHHHhcccccc
Confidence            9999999887666654

>PRK10218 GTP-binding protein; Provisional

Probab=99.80  E-value=3.1e-18  Score=141.93  Aligned_cols=162  Identities=16%  Similarity=0.209  Sum_probs=118.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh--CcccCc------------ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK--GQFIEF------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL   75 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   75 (200)
                      -.+|+++|+.++|||||+++|+.  +.+...            .....|.++......+...++.+.+|||||+..+...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999996  333221            1234566777777777777899999999999999999


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHHHHHHH-------cCC
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQE-------NGL  147 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~  147 (200)
                      +..++..+|++|+|+|+.+... .....++.....   .++|.++++||+|+...+. ...+++..+...       ..+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            9999999999999999987422 223333333333   3678899999999864321 112334444322       346


Q ss_pred             cEEEecCCCCC----------CHHHHHHHHHHhccccC
Q 029029          148 FFMETSAKTAT----------NVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       148 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~  175 (200)
                      +++.+||.+|.          ++..+++.+++.+....
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            79999999998          58899999998886553

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.80  E-value=9.4e-19  Score=118.53  Aligned_cols=135  Identities=19%  Similarity=0.239  Sum_probs=95.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhcCCcEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----RYHSLAPMYYRGAAAAI   87 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   87 (200)
                      ||+++|+.|||||||+++|.+....  +..+..+.+            .=.++||||.-    .+.........+||+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            7999999999999999999864432  323322222            12347999943    23333344567899999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~  166 (200)
                      ++.|.+++.+.-.     ..+...  .+.|+|-|+||+|+... ..+.+.++++.+.-|+. +|++|+.+|+|+++++++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998643211     112222  35799999999998732 34667788888888884 899999999999999998


Q ss_pred             HH
Q 029029          167 IA  168 (200)
Q Consensus       167 l~  168 (200)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.80  E-value=2.2e-18  Score=142.37  Aligned_cols=157  Identities=18%  Similarity=0.205  Sum_probs=102.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcc----cCcceeeEEEEEEE------------ECCeEEEEEEEeCCCcccc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLA------------VNDATVKFEIWDTAGQERY   72 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~i~D~~G~~~~   72 (200)
                      +..-|+++|++++|||||+++|.+..+....    ..+.|..+......            ++.....+.+|||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            3456999999999999999999976553221    12223222211110            0011124899999999999


Q ss_pred             ccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----C--------CHHH
Q 029029           73 HSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----V--------TAEE  137 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----~--------~~~~  137 (200)
                      ..++..++..+|++++|+|.++   +++++.+.    .+..   .++|+++++||+|+.+...    .        ....
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            9888889999999999999987   44443332    2222   3689999999999863210    0        0000


Q ss_pred             ------------HHHHHH------------H--cCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          138 ------------AQAYAQ------------E--NGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       138 ------------~~~~~~------------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                                  ...+.+            .  ..++++++||++|+|+++++.+|.....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                        011111            0  1357999999999999999999876443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=5.7e-18  Score=126.20  Aligned_cols=114  Identities=19%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccC-------------c---ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIE-------------F---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL   75 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   75 (200)
                      +|+++|+.|+|||||+++|+......             .   .....+.+.......+...+.++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            58999999999999999998632110             0   0112233444444555556788999999999988888


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +..+++.+|++++|+|..+.... ....++..+..   .++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence            88899999999999999875332 33455555544   3689999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.79  E-value=3.6e-18  Score=127.03  Aligned_cols=173  Identities=13%  Similarity=0.147  Sum_probs=116.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc------------c
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY------------H   73 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------------~   73 (200)
                      ..++.++|+|+|+|++|||||.|.+++..... .+....++.......+.....++.|+||||.-.-            -
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~-vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCcccc-ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            34778999999999999999999999655543 4444556666666667777889999999993210            1


Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH------------HHH
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE------------AQA  140 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~------------~~~  140 (200)
                      .-....+..||++++++|.++...  .+ ...+..+..+  ..+|-++|+||+|......+....            ..+
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence            112234678999999999996321  11 2334444444  567899999999975432111110            111


Q ss_pred             HHHH-cC------------C----cEEEecCCCCCCHHHHHHHHHHhccccCCCCCCCCce
Q 029029          141 YAQE-NG------------L----FFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV  184 (200)
Q Consensus       141 ~~~~-~~------------~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~  184 (200)
                      ..+. ..            .    .+|.+||.+|.|++++.++|..++..... .+|.+++
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW-~y~a~i~  282 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW-KYPADIV  282 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC-CCCcccc
Confidence            1111 11            1    38999999999999999999997765443 5666665

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.79  E-value=4.8e-18  Score=141.50  Aligned_cols=158  Identities=17%  Similarity=0.189  Sum_probs=104.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCc---ccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      -|+++|+.++|||||+++|++..   +.....  -|.+.......+ ...+..+.+||+||++.+...+...+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~--rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKK--RGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhccc--CCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            48999999999999999998532   222221  233322222222 112346899999999988777777788999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCCC--HHHHHHHHHHcC---CcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT--AEEAQAYAQENG---LFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~  161 (200)
                      +|+|..+.. .....+.+..+...   ++| +++|+||+|+.+.....  .+++..+....+   .+++++||++|.|++
T Consensus        80 LVVda~eg~-~~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         80 LVVACDDGV-MAQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            999998731 12222333333333   344 57999999986532211  233444444444   689999999999999


Q ss_pred             HHHHHHHHhccccC
Q 029029          162 DIFYEIAKRLPRVQ  175 (200)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (200)
                      +++++|.+......
T Consensus       156 ~L~~~L~~~~~~~~  169 (614)
T PRK10512        156 ALREHLLQLPEREH  169 (614)
T ss_pred             HHHHHHHHhhcccc
Confidence            99999987665543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=6.9e-18  Score=132.24  Aligned_cols=160  Identities=21%  Similarity=0.200  Sum_probs=115.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------hh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-----------AP   77 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~   77 (200)
                      ..+||+|+|.|++|||||+|+|+ +.-....++..|++.......++..+.++.++||+|..+-...           ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~il-geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAIL-GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhc-cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            46999999999999999999999 4445567788899988888888777889999999994321111           11


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEe
Q 029029           78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMET  152 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~  152 (200)
                      ..+..+|++++|+|.+++-+-.. .+....+..   .+.++++++||-|+.+......++.+.....     ...+++.+
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQD-LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            24678999999999998744222 222223322   4778999999999977543444443333222     23479999


Q ss_pred             cCCCCCCHHHHHHHHHHhccc
Q 029029          153 SAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ||.++.++..+|+.+.+....
T Consensus       332 SA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             EecCCCChHHHHHHHHHHHHH
Confidence            999999999999987764433

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=4e-18  Score=125.46  Aligned_cols=113  Identities=19%  Similarity=0.279  Sum_probs=79.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcc-----------------cCcceeeEEEEEEEE-----CCeEEEEEEEeCCCc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------------ESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQ   69 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~   69 (200)
                      +|+++|+.|+|||||+++|+........                 ....|.+........     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432110                 111222322222222     355688999999999


Q ss_pred             cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ..+......++..+|++++|+|..+..+.. ...++.....   .++|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECcccC
Confidence            988878888899999999999998765432 2334444333   358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=9.6e-18  Score=133.78  Aligned_cols=164  Identities=16%  Similarity=0.190  Sum_probs=111.3

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      ....+.++|+++|+.++|||||+++|++....              .......|.+.......++.....+.++||||++
T Consensus         7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence            34567899999999999999999999852110              0111133455555555565566789999999998


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCCC---HHHHHHHHHHcC
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT---AEEAQAYAQENG  146 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  146 (200)
                      ++.......+..+|++++|+|..+... ....+++..+...   ++| +++++||+|+.+.....   .+++..+.+..+
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            776666666778999999999986321 2223334444433   566 67889999986432211   124445544444


Q ss_pred             -----CcEEEecCCCCC--------CHHHHHHHHHHhcc
Q 029029          147 -----LFFMETSAKTAT--------NVNDIFYEIAKRLP  172 (200)
Q Consensus       147 -----~~~~~~Sa~~~~--------~i~~~~~~l~~~~~  172 (200)
                           ++++++||.+|.        ++.++++.+.+.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                 579999999983        67888888887765

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=1.3e-18  Score=128.57  Aligned_cols=148  Identities=19%  Similarity=0.164  Sum_probs=95.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCccc-----------------------------CcccCcceeeEEEEEEEECCeEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFI-----------------------------EFQESTIGAAFFSQTLAVNDATVKFE   62 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (200)
                      +|+++|+.++|||||+.+|+...-.                             .......|++.......+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999999742110                             00011223444444455555678899


Q ss_pred             EEeCCCccccccchhhhhcCCcEEEEEEeCCCHH------HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC--CCC
Q 029029           63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA------SFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR--KVT  134 (200)
Q Consensus        63 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~--~~~  134 (200)
                      +|||||+..+.......+..+|++|+|+|.++..      ........+......  ...|+++++||+|+....  ...
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence            9999998777666666678899999999998742      111222222222222  236899999999986321  111


Q ss_pred             H----HHHHHHHHHcC-----CcEEEecCCCCCCHH
Q 029029          135 A----EEAQAYAQENG-----LFFMETSAKTATNVN  161 (200)
Q Consensus       135 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  161 (200)
                      .    +++.......+     ++++++||++|.|++
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1    22333334433     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.77  E-value=1.7e-17  Score=137.60  Aligned_cols=159  Identities=23%  Similarity=0.244  Sum_probs=102.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcc----cCcceeeEEEEEEEE--CCeE-----E-----EEEEEeCCCc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLAV--NDAT-----V-----KFEIWDTAGQ   69 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~G~   69 (200)
                      +..++..|+++|++++|||||+++|.+.......    ..+.|.++.......  .+..     .     .+.||||||+
T Consensus         2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            3456778999999999999999999854332111    112232222111100  0111     1     2789999999


Q ss_pred             cccccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----CCH-------
Q 029029           70 ERYHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----VTA-------  135 (200)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----~~~-------  135 (200)
                      +.+...+...+..+|++++|+|.++   ++++..+.    .+..   .++|+++++||+|+.....    ...       
T Consensus        82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            9998888888899999999999987   55544432    2222   4689999999999852110    000       


Q ss_pred             -H-----------HHHHHHHHc---------------CCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029          136 -E-----------EAQAYAQEN---------------GLFFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       136 -~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                       .           ++.......               .++++++||.+|.|++++++.+...+
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence             0           011111111               25789999999999999998876543

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1.3e-17  Score=117.97  Aligned_cols=157  Identities=17%  Similarity=0.202  Sum_probs=110.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc----------cccccchhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLAPM   78 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~   78 (200)
                      ...-|+++|.+++|||||||+|+++..-...+.++|.|...+.+.+++.   +.+.|.||.          +........
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            3568999999999999999999987766778889999999998888764   889999993          233344444


Q ss_pred             hhc---CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC----Cc--E
Q 029029           79 YYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG----LF--F  149 (200)
Q Consensus        79 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~--~  149 (200)
                      |+.   +-.++++++|+..+-.-.. ++.++.+..   .++|+++++||+|.....+.. ..+...++...    ..  +
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~  174 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWV  174 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceE
Confidence            554   3467888999987532211 233333333   478999999999987643322 11222232222    22  6


Q ss_pred             EEecCCCCCCHHHHHHHHHHhccc
Q 029029          150 METSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      +.+|+.++.|++++...|.+.+..
T Consensus       175 ~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         175 VLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EEEecccccCHHHHHHHHHHHhhc
Confidence            788999999999999998887654

>COG2262 HflX GTPases [General function prediction only]

Probab=99.77  E-value=2.1e-17  Score=127.80  Aligned_cols=161  Identities=20%  Similarity=0.166  Sum_probs=115.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--cccchhh------h
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPM------Y   79 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~------~   79 (200)
                      ..-..|+++|.+|+|||||+|.|++........-..+.+.....+.+.+ +..+.+.||.|.-+  ...+...      -
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            4467899999999999999999996555444444444444455555544 67899999999432  1112222      2


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN  159 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (200)
                      ...+|+++.|+|.++|.....+......+.......+|+++|.||+|+.....    .......... ..+.+||++|.|
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g  343 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG  343 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence            46799999999999997777777777777776667799999999999765432    1111111112 588999999999


Q ss_pred             HHHHHHHHHHhcccc
Q 029029          160 VNDIFYEIAKRLPRV  174 (200)
Q Consensus       160 i~~~~~~l~~~~~~~  174 (200)
                      ++.+++.|.+.+...
T Consensus       344 l~~L~~~i~~~l~~~  358 (411)
T COG2262         344 LDLLRERIIELLSGL  358 (411)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999988754

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=1.9e-17  Score=132.14  Aligned_cols=163  Identities=15%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc--------------cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF--------------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      ...+.++|+++|+.++|||||+++|++...              ........|.+.......++.....+.|+||||++.
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            446789999999999999999999986211              001112334555555555555667899999999987


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCcCccCCCCC---CHHHHHHHHHHcC-
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKV---TAEEAQAYAQENG-  146 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~-  146 (200)
                      +.......+..+|++++|+|..+.. .....+++..+..   .++|.+ +++||+|+.+..+.   ..+++..+.+.++ 
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            7666666778899999999998732 2223344444443   356755 67999998643221   1124455555543 


Q ss_pred             ----CcEEEecCCCCC----------CHHHHHHHHHHhcc
Q 029029          147 ----LFFMETSAKTAT----------NVNDIFYEIAKRLP  172 (200)
Q Consensus       147 ----~~~~~~Sa~~~~----------~i~~~~~~l~~~~~  172 (200)
                          ++++++||.++.          ++.++++.|.+.+.
T Consensus       164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence                679999999984          67788888877654

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.77  E-value=3.2e-17  Score=123.02  Aligned_cols=166  Identities=18%  Similarity=0.126  Sum_probs=117.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HSLAPMY   79 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~   79 (200)
                      .....+++++|+|++|||||++.|++....  .....-++..+....++..+.++|+.|+||.-.-       ....-..
T Consensus        60 KsGda~v~lVGfPsvGKStLL~~LTnt~se--va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv  137 (365)
T COG1163          60 KSGDATVALVGFPSVGKSTLLNKLTNTKSE--VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV  137 (365)
T ss_pred             ccCCeEEEEEcCCCccHHHHHHHHhCCCcc--ccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence            355789999999999999999999964432  2233334555666677788899999999984321       1234456


Q ss_pred             hcCCcEEEEEEeCCCHHH-HHHHHHHHH----------------------------------------------------
Q 029029           80 YRGAAAAIIVYDITNQAS-FERAKKWVQ----------------------------------------------------  106 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------------------  106 (200)
                      .++||++++|+|...... .+.+.+.++                                                    
T Consensus       138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~  217 (365)
T COG1163         138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD  217 (365)
T ss_pred             eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence            789999999999986544 444444443                                                    


Q ss_pred             -------------HHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          107 -------------ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       107 -------------~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                                   .....+...+|.++|.||+|+..     .++...+.+..  .++.+||..+.|++++.+.|++.+.-
T Consensus       218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                         00111234789999999999754     34455555444  67999999999999999999999876


Q ss_pred             cCCCCCCC
Q 029029          174 VQPAPNPS  181 (200)
Q Consensus       174 ~~~~~~~~  181 (200)
                      .+--..|.
T Consensus       291 iRVYtK~~  298 (365)
T COG1163         291 IRVYTKPP  298 (365)
T ss_pred             EEEEecCC
Confidence            54443333

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=1.8e-17  Score=132.30  Aligned_cols=150  Identities=15%  Similarity=0.150  Sum_probs=100.7

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      .+..+.++|+++|+.++|||||+++|++....              .......|.+.......++.....+.+|||||++
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            45677899999999999999999999843110              0111123455555556666667789999999998


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEeCcCccCCCCCC---HHHHHHHHHHcC
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKADLLDARKVT---AEEAQAYAQENG  146 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  146 (200)
                      +|.......+..+|++++|+|..+... ....+.+..+...   ++|. ++++||+|+.+.....   .+++..+++.++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            876655556678899999999987321 1222334444433   4565 4689999986532211   234555665554


Q ss_pred             -----CcEEEecCCCCC
Q 029029          147 -----LFFMETSAKTAT  158 (200)
Q Consensus       147 -----~~~~~~Sa~~~~  158 (200)
                           ++++++||.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.75  E-value=1e-17  Score=133.90  Aligned_cols=173  Identities=22%  Similarity=0.307  Sum_probs=129.1

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      +.....+||+++|..|+||||||-.|+...++....+....-  .....+.-..+...+.|++...+.+.....-++.||
T Consensus         4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~   81 (625)
T KOG1707|consen    4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKAD   81 (625)
T ss_pred             ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHhhcC
Confidence            445679999999999999999999999988877665543211  111222233455899999877666666677889999


Q ss_pred             EEEEEEeCCCHHHHHHH-HHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHH-HHHHHHHcC-C-cEEEecCCCCC
Q 029029           85 AAIIVYDITNQASFERA-KKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEE-AQAYAQENG-L-FFMETSAKTAT  158 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~  158 (200)
                      ++.++|+.+++++++.+ ..|+..++....  .++|+|+|+||+|.......+.+. ...+...+. + .-++|||++-.
T Consensus        82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~  161 (625)
T KOG1707|consen   82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA  161 (625)
T ss_pred             EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence            99999999999999998 689999988642  689999999999997655443333 222322222 1 25899999999


Q ss_pred             CHHHHHHHHHHhccccCCCCC
Q 029029          159 NVNDIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~~~~  179 (200)
                      ++.++|+...+.+.......+
T Consensus       162 n~~e~fYyaqKaVihPt~PLy  182 (625)
T KOG1707|consen  162 NVSELFYYAQKAVIHPTSPLY  182 (625)
T ss_pred             hhHhhhhhhhheeeccCcccc
Confidence            999999998887776655444

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=3.5e-17  Score=120.52  Aligned_cols=165  Identities=18%  Similarity=0.254  Sum_probs=106.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccc-----cchhhhhcCCcE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYH-----SLAPMYYRGAAA   85 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~~d~   85 (200)
                      ||+++|+.+|||||+.+.+.++.. +......+.+.......+ ......+++||+||+..+.     ......++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999999885443 333333333333333333 2445689999999987543     345668899999


Q ss_pred             EEEEEeCCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC------CHHHHHHHHHHcC---CcEEEec
Q 029029           86 AIIVYDITNQAS---FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV------TAEEAQAYAQENG---LFFMETS  153 (200)
Q Consensus        86 ~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~S  153 (200)
                      +|||+|+...+.   ...+...++.+... .++..+.+++.|+|+..+...      ..+.+.+.+...+   +.++.||
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999984332   33334455555554 478999999999998643211      1122333344455   7899999


Q ss_pred             CCCCCCHHHHHHHHHHhccccCCCCC
Q 029029          154 AKTATNVNDIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~~~~  179 (200)
                      ..+ ..+.++|..++..+..+.+...
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~le  183 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTLE  183 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHHH
Confidence            999 5899999999999987665544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=8.3e-17  Score=117.05  Aligned_cols=158  Identities=18%  Similarity=0.180  Sum_probs=96.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCccee---eEEEEEEEECCeEEEEEEEeCCCccccccchhhh-----hc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA---AFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-----YR   81 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~   81 (200)
                      ++||+++|.+|+|||||+|.|++...........+.   +.....+.. .....+.+||+||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999975443322222221   111111111 113469999999975432222222     56


Q ss_pred             CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC-----------CHHHHHHHH----HHc
Q 029029           82 GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKV-----------TAEEAQAYA----QEN  145 (200)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-----------~~~~~~~~~----~~~  145 (200)
                      .+|+++++.+.    .+... ..+++.+...   +.|+++|+||+|+......           ..+.++..+    ...
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78998887542    23333 3455555554   5789999999998532110           011112121    122


Q ss_pred             C---CcEEEecCC--CCCCHHHHHHHHHHhccccC
Q 029029          146 G---LFFMETSAK--TATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       146 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +   -++|.+|+.  .+.++..+.+.|...+.+.+
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence            2   258999998  57899999999999887653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.74  E-value=8.4e-17  Score=120.38  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=109.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeE-EEEEEEeCCCcccc----ccchhh---hhcC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERY----HSLAPM---YYRG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~----~~~~~~---~~~~   82 (200)
                      ..|.+||.|++|||||+++|.....  ...+..-++..+..-++...+ ..+.+-|.||.-+-    +.+-..   .++.
T Consensus       197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            3578999999999999999985544  333444344444444443333 33999999995422    222222   3568


Q ss_pred             CcEEEEEEeCCCH---HHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCC
Q 029029           83 AAAAIIVYDITNQ---ASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKT  156 (200)
Q Consensus        83 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  156 (200)
                      ++.++||+|++.+   ..|+.++.+..++..+.  ..+.|.++|+||+|+.+.   ....+..+++...-+ ++++||+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecc
Confidence            9999999999987   78888877777766643  367899999999997532   223346666665544 89999999


Q ss_pred             CCCHHHHHHHHHHh
Q 029029          157 ATNVNDIFYEIAKR  170 (200)
Q Consensus       157 ~~~i~~~~~~l~~~  170 (200)
                      ++++.++++.|.+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999987654

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=5.7e-17  Score=122.00  Aligned_cols=159  Identities=19%  Similarity=0.163  Sum_probs=109.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc------ccc---cchhhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE------RYH---SLAPMY   79 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~---~~~~~~   79 (200)
                      ....|+|.|+||+|||||++.+.+....  ..+.+-++-......++.....+|++||||.=      ...   ....+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE--vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE--VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCc--cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            4568999999999999999999854432  33343344444445556667799999999931      111   111122


Q ss_pred             hcCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCC
Q 029029           80 YRGAAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKT  156 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (200)
                      -.-.++++|++|.+.  ..+.+....++..+....  ..|+++|+||+|..+....  +++.......+. ....+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeee
Confidence            345789999999985  567777888889988874  3899999999998754433  233333333333 366788888


Q ss_pred             CCCHHHHHHHHHHhccc
Q 029029          157 ATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~  173 (200)
                      +.+++.+...+.....+
T Consensus       321 ~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         321 GCGLDKLREEVRKTALE  337 (346)
T ss_pred             hhhHHHHHHHHHHHhhc
Confidence            88899888777766443

>CHL00071 tufA elongation factor Tu

Probab=99.73  E-value=1.4e-16  Score=127.64  Aligned_cols=151  Identities=15%  Similarity=0.160  Sum_probs=102.2

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      ....+.++|+++|++++|||||+++|++....              .......|.+.......+......+.++||||+.
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            45567899999999999999999999963110              0111224455555555555566789999999988


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHcC
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQENG  146 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~  146 (200)
                      .+.......+..+|++++|+|..... ..+....+..+...   ++| +++++||+|+.+..+.   ..+++..+.+..+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            77666667778999999999998642 22333444444433   567 7789999998653221   1123444444433


Q ss_pred             -----CcEEEecCCCCCC
Q 029029          147 -----LFFMETSAKTATN  159 (200)
Q Consensus       147 -----~~~~~~Sa~~~~~  159 (200)
                           ++++++||.+|.+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        163 FPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCCcceEEEcchhhccc
Confidence                 6799999999864

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.73  E-value=1.4e-16  Score=128.52  Aligned_cols=153  Identities=17%  Similarity=0.200  Sum_probs=106.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCccc--C---------------------------cccCcceeeEEEEEEEECC
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------------------------FQESTIGAAFFSQTLAVND   56 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~   56 (200)
                      ...+.++|+++|+.++|||||+.+|+...-.  .                           .....-|.+.......+..
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            3456899999999999999999998752210  0                           0011123444455555666


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHH-------HHHHHHHHHHHhCCCCC-eEEEEEeCcCcc
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE-------RAKKWVQELQAQGNPNM-VMALAGNKADLL  128 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-~~ivv~nK~D~~  128 (200)
                      ....+.++|+||+++|...+...+..+|++|+|+|..+. .|+       +..+.+.....   .++ ++++++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence            778999999999999988888889999999999999873 222       33333333333   345 478899999975


Q ss_pred             CCCC------CCHHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q 029029          129 DARK------VTAEEAQAYAQENG-----LFFMETSAKTATNVND  162 (200)
Q Consensus       129 ~~~~------~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (200)
                      +...      ...+++..+++..+     ++++++||.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            2110      01344666666655     5799999999999854

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.73  E-value=1.6e-16  Score=117.34  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=96.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccC-----------------------cceeeEEEEE-------------EEEC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQES-----------------------TIGAAFFSQT-------------LAVN   55 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~   55 (200)
                      ||+++|+.++|||||+++|..+.+......                       ..|.+.....             ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997555321110                       0011100000             0111


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029           56 DATVKFEIWDTAGQERYHSLAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV  133 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~  133 (200)
                      .....+.++|+||++.+.......+.  .+|++++|+|..+... .....++..+...   ++|+++++||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence            22457999999999887655444443  6899999999876432 2233444544443   5789999999998543221


Q ss_pred             C--HHHHHHHHH--------------------------HcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029          134 T--AEEAQAYAQ--------------------------ENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus       134 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      .  .+.+.+..+                          ...+++|.+||.+|.|++++...|..
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            1  111222221                          11248999999999999999887643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.72  E-value=1.6e-16  Score=128.32  Aligned_cols=155  Identities=19%  Similarity=0.157  Sum_probs=103.6

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcc--cC---------------------------cccCcceeeEEEEEEEEC
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQF--IE---------------------------FQESTIGAAFFSQTLAVN   55 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~   55 (200)
                      ++..+.++|+++|+.++|||||+.+|+...-  ..                           ......|.+.......++
T Consensus         2 ~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~   81 (446)
T PTZ00141          2 GKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE   81 (446)
T ss_pred             CCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc
Confidence            4556789999999999999999999986211  00                           001122444444555566


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEeCcCcc
Q 029029           56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKADLL  128 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~  128 (200)
                      .....+.|+|+||+.+|...+...+..+|++++|+|..+...   +   .+..+.+......   ++| +++++||+|..
T Consensus        82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDK  158 (446)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence            677899999999999888777778899999999999986421   1   1333444444443   455 67899999943


Q ss_pred             C--CCCCCH----HHHHHHHHHc-----CCcEEEecCCCCCCHHH
Q 029029          129 D--ARKVTA----EEAQAYAQEN-----GLFFMETSAKTATNVND  162 (200)
Q Consensus       129 ~--~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (200)
                      .  ..+...    +++..+....     +++++++|+.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            2  111111    2333333333     35799999999999864

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=2.9e-16  Score=119.47  Aligned_cols=144  Identities=14%  Similarity=0.191  Sum_probs=93.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCc----------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---   74 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---   74 (200)
                      ...++|+++|.+|+|||||+|+|++......          ..++.+.......+..++....+.+|||||......   
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            3578999999999999999999998766433          223333444445555567778999999999432110   


Q ss_pred             c-----------------------hhhhhc--CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           75 L-----------------------APMYYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        75 ~-----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      .                       ....+.  .+|+++|+++.+... +... ...++.+..    .+|+++|+||+|+.
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l  156 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTL  156 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcC
Confidence            0                       101222  467888888876421 1111 233344432    57899999999986


Q ss_pred             CCCC--CCHHHHHHHHHHcCCcEEEecCCC
Q 029029          129 DARK--VTAEEAQAYAQENGLFFMETSAKT  156 (200)
Q Consensus       129 ~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~  156 (200)
                      ...+  .....+.+.+..+++++|......
T Consensus       157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            5322  234556777788999998776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.72  E-value=3.7e-16  Score=124.73  Aligned_cols=164  Identities=14%  Similarity=0.173  Sum_probs=109.8

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      .+..+.++|+++|+.++|||||+++|++....              .......|.+.......+......+.++||||+.
T Consensus         7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence            45577899999999999999999999863110              0011133455555555555556789999999998


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCcCccCCCCC---CHHHHHHHHHHc-
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKV---TAEEAQAYAQEN-  145 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~-  145 (200)
                      ++.......+..+|++++|+|..+.. .....+++..+...   ++|.+ +++||+|+.+....   ...++..+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            77666666778999999999998642 22333444444443   56765 68999998642211   112344444433 


Q ss_pred             ----CCcEEEecCCCCC----------CHHHHHHHHHHhcc
Q 029029          146 ----GLFFMETSAKTAT----------NVNDIFYEIAKRLP  172 (200)
Q Consensus       146 ----~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~  172 (200)
                          +++++++||.++.          ++..+++.|.+.+.
T Consensus       163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence                3689999999875          46777777777554

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.71  E-value=2.8e-16  Score=114.20  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=104.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------c---hhhh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------L---APMY   79 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~   79 (200)
                      ++|+++|.+|+|||||+|+|++...........+.+...........+..+.++||||......        +   ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999997654322211222222222222222446899999999654321        1   1112


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCC------CHHHHHHHHHHcCCcEEE
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKV------TAEEAQAYAQENGLFFME  151 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~  151 (200)
                      ..++|++++|++..+. +. .....++.+....  ....++++++|+.|......+      ....++.+.+..+-.++.
T Consensus        81 ~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            3578999999998862 21 1122233333321  123468889999986543211      123456666666666655


Q ss_pred             ec-----CCCCCCHHHHHHHHHHhccccCCCCCCCC
Q 029029          152 TS-----AKTATNVNDIFYEIAKRLPRVQPAPNPSG  182 (200)
Q Consensus       152 ~S-----a~~~~~i~~~~~~l~~~~~~~~~~~~~~~  182 (200)
                      ++     +..+.+++++++.+.+.+.+..+.++..+
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~  194 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTND  194 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            54     45678999999999999998777666543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.71  E-value=1.8e-16  Score=126.87  Aligned_cols=149  Identities=24%  Similarity=0.274  Sum_probs=95.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCc-------------c------------------cCcceeeEEEEEEEECCeEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF-------------Q------------------ESTIGAAFFSQTLAVNDATV   59 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~~   59 (200)
                      ++|+++|+.++|||||+++|+...-.-.             .                  +..-|.+.......+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999975321100             0                  00112333333444444567


Q ss_pred             EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH----
Q 029029           60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA----  135 (200)
Q Consensus        60 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~----  135 (200)
                      .+.++||||++.+.......+..+|++++|+|...... .+..+.+..+....  ..++++++||+|+.+......    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            89999999998887666677889999999999986422 12222223333332  235889999999864322111    


Q ss_pred             HHHHHHHHHcC---CcEEEecCCCCCCHHH
Q 029029          136 EEAQAYAQENG---LFFMETSAKTATNVND  162 (200)
Q Consensus       136 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  162 (200)
                      ++...+.+..+   ++++++||.+|.|+++
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            12222333333   4699999999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.70  E-value=5.2e-16  Score=127.31  Aligned_cols=118  Identities=16%  Similarity=0.158  Sum_probs=83.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc-cCc-------------------ccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDTA   67 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   67 (200)
                      .+..+|+|+|+.++|||||.++|+...- ...                   ....-|.++......+...++.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4567999999999999999999974111 000                   01112344444445555667889999999


Q ss_pred             CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      |+..+......++..+|++|+|+|..+... .....++.....   .++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            999888777778899999999999987421 123344443333   4789999999999753

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.70  E-value=2.3e-16  Score=128.23  Aligned_cols=155  Identities=21%  Similarity=0.224  Sum_probs=98.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCc-------------ccC------------------cceeeEEEEEEEE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-------------QES------------------TIGAAFFSQTLAV   54 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~   54 (200)
                      .....++|+++|+.++|||||+++|+...-.-.             ...                  .-|.+.......+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            346689999999999999999999986432100             000                  1123333334444


Q ss_pred             CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029           55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT  134 (200)
Q Consensus        55 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~  134 (200)
                      ......+.|+||||++.+.......+..+|++++|+|..+... ....+.+.......  ..++++++||+|+.+.....
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHHHHHHhC--CCceEEEEEeeccccchhHH
Confidence            5556789999999998876555566789999999999976421 11112222222222  24788999999986432211


Q ss_pred             HHH----HHHHHHHc----CCcEEEecCCCCCCHHHH
Q 029029          135 AEE----AQAYAQEN----GLFFMETSAKTATNVNDI  163 (200)
Q Consensus       135 ~~~----~~~~~~~~----~~~~~~~Sa~~~~~i~~~  163 (200)
                      .+.    +..+.+..    ..+++++||++|.|++++
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            222    22223332    367999999999999864

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=6.1e-16  Score=125.46  Aligned_cols=148  Identities=17%  Similarity=0.167  Sum_probs=100.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcc------cC--------cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF------IE--------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY   72 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   72 (200)
                      ..+.++|+++|+.++|||||+++|++...      ..        ......|.+.......++.....+.++|+||++++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            45689999999999999999999995211      00        11222344444444445555678999999999988


Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHc---
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQEN---  145 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~---  145 (200)
                      .......+..+|++++|+|..+.. .....+++..+...   ++| +++++||+|+.+..+.   ..+++..+.+..   
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            777777778999999999988642 22334445544443   566 7789999998653221   112344444443   


Q ss_pred             --CCcEEEecCCCCC
Q 029029          146 --GLFFMETSAKTAT  158 (200)
Q Consensus       146 --~~~~~~~Sa~~~~  158 (200)
                        +++++++|+.++.
T Consensus       234 ~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        234 GDDIPIISGSALLAL  248 (478)
T ss_pred             cCcceEEEEEccccc
Confidence              4679999998875

>cd04169 RF3 RF3 subfamily

Probab=99.70  E-value=1e-15  Score=116.00  Aligned_cols=115  Identities=16%  Similarity=0.168  Sum_probs=80.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCccc-Ccc-------------------cCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EFQ-------------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      .+|+++|++|+|||||+++|+...-. ...                   ....+.+.......++..+..+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            57999999999999999999852110 000                   0011334445555666677899999999998


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      ++.......+..+|++|+|+|.++... .....++.....   .++|+++++||+|+.+
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            877766777899999999999987522 122333333322   4689999999999754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.69  E-value=9.1e-16  Score=123.79  Aligned_cols=162  Identities=15%  Similarity=0.185  Sum_probs=105.6

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhC------ccc--------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKG------QFI--------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY   72 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   72 (200)
                      ..+.++|+++|+.++|||||+++|.+.      ...        ...+...|.+.......++..+..+.|+||||+..+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            456899999999999999999999731      100        001122455555556666666778999999999877


Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCCCH---HHHHHHHHHc---
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVTA---EEAQAYAQEN---  145 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~---  145 (200)
                      -......+..+|++++|+|..+.. ..+..+.+..+...   ++| +++++||+|+.+......   +++.++....   
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            665556667899999999987642 22233444444443   567 578899999865322111   1222333322   


Q ss_pred             --CCcEEEecCC---CCCC-------HHHHHHHHHHhcc
Q 029029          146 --GLFFMETSAK---TATN-------VNDIFYEIAKRLP  172 (200)
Q Consensus       146 --~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~~  172 (200)
                        .++++++|+.   ++.|       +.++++.+.+.+.
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence              3678888875   4555       6788888877664

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=3.1e-16  Score=118.86  Aligned_cols=114  Identities=18%  Similarity=0.126  Sum_probs=79.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCccc-C---------------cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFI-E---------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL   75 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   75 (200)
                      +|+++|++++|||||+++|+...-. .               ......|.+.......+...+..+.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            5899999999999999999752110 0               01112234444444444445678999999999888878


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +...+..+|++|+|+|..+... ......+..+..   .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8889999999999999987422 122333444433   4678999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.68  E-value=5.5e-16  Score=114.13  Aligned_cols=113  Identities=19%  Similarity=0.211  Sum_probs=77.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCc--c------------cCcceeeEEE--EEEEEC--------CeEEEEEEEeCC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEF--Q------------ESTIGAAFFS--QTLAVN--------DATVKFEIWDTA   67 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~--~------------~~~~~~~~~~--~~~~~~--------~~~~~~~i~D~~   67 (200)
                      +|+++|+.++|||||+.+|+.......  .            ...-|.+...  ......        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999986432100  0            0001111111  122222        347889999999


Q ss_pred             CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      |+..+......++..+|++++|+|..+...... ...+.....   .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence            999999888999999999999999987643332 223333322   357899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=1.7e-16  Score=120.69  Aligned_cols=157  Identities=15%  Similarity=0.120  Sum_probs=100.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCc-c---c--C----------cceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEF-Q---E--S----------TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL   75 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~-~---~--~----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   75 (200)
                      +|+++|++|+|||||+++|+....... .   .  .          ..+.+.......+...++.+++|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            589999999999999999985321100 0   0  0          0011222222333334578999999999887777


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEE--Eec
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFM--ETS  153 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~S  153 (200)
                      +...+..+|++++|+|.++...... ...+..+..   .++|.++++||+|+....  ..+....+....+.+++  .+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip  154 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP  154 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence            7888899999999999987543322 222233332   468999999999986431  12233444444555544  445


Q ss_pred             CCCCCCHHHHHHHHHHhcccc
Q 029029          154 AKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~  174 (200)
                      ..++.++..+.+.+..+....
T Consensus       155 ~~~~~~~~~~vd~~~~~~~~~  175 (268)
T cd04170         155 IGEGDDFKGVVDLLTEKAYIY  175 (268)
T ss_pred             ccCCCceeEEEEcccCEEEEc
Confidence            677778777777666655544

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.67  E-value=1.2e-15  Score=123.02  Aligned_cols=167  Identities=14%  Similarity=0.162  Sum_probs=107.2

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCccc---CcccC--c--ceeeEEEE-----------EEEECC-----------
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQES--T--IGAAFFSQ-----------TLAVND-----------   56 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~---~~~~~--~--~~~~~~~~-----------~~~~~~-----------   56 (200)
                      ..+..++|+++|+...|||||+.+|++....   ++...  +  .|......           ....+.           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            4578999999999999999999999953221   11100  1  11111000           000000           


Q ss_pred             -----eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           57 -----ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        57 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                           ....+.|+|+||++.+...+...+..+|++++|+|..++....+..+.+.......  -.++++++||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence                 02468999999999887777777889999999999987421222233343333332  24689999999986432


Q ss_pred             CC--CHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          132 KV--TAEEAQAYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       132 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      ..  ..++++.+.+.   .+.+++++||++|.|++.+++.|.+.+...
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            21  12233333322   356899999999999999999999866543

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=1.3e-15  Score=128.42  Aligned_cols=153  Identities=24%  Similarity=0.231  Sum_probs=97.4

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCc-------------cc------------------CcceeeEEEEEEEEC
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-------------QE------------------STIGAAFFSQTLAVN   55 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~~   55 (200)
                      ....++|+++|++++|||||+++|+...-.-.             ..                  ..-|.+.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            45678999999999999999999986332100             00                  001223333333444


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH
Q 029029           56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA  135 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~  135 (200)
                      ..+..+.|+||||++.+.......+..+|++++|+|...... ....+.+..+...  ...++++++||+|+.+......
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence            456678999999998776555566789999999999976421 1222223333333  2257889999999864221111


Q ss_pred             ----HHHHHHHHHcC---CcEEEecCCCCCCHHH
Q 029029          136 ----EEAQAYAQENG---LFFMETSAKTATNVND  162 (200)
Q Consensus       136 ----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  162 (200)
                          .++..+.+..+   ++++++||++|.|+.+
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                22233334444   4689999999999874

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=4.2e-16  Score=122.70  Aligned_cols=171  Identities=16%  Similarity=0.134  Sum_probs=120.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-cccch--------hh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLA--------PM   78 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~--------~~   78 (200)
                      +..++|+++|+||+|||||+|.|. +......+|..|++.......++-.++++.+.||+|..+ -....        ..
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~-~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALS-REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHh-cCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            556899999999999999999999 666777889999999999988888899999999999654 21111        12


Q ss_pred             hhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHh------CCCCCeEEEEEeCcCccCC-CCCCHHHHHHHHH-Hc-CC
Q 029029           79 YYRGAAAAIIVYDITN--QASFERAKKWVQELQAQ------GNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQ-EN-GL  147 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~------~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~-~~-~~  147 (200)
                      .+..+|++++|+|+..  -++-..+.+.+......      .....+++++.||.|+... .+........... .+ ..
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            3678999999999943  22222223334333221      1245789999999999764 2222211222222 11 12


Q ss_pred             c-EEEecCCCCCCHHHHHHHHHHhccccCCCCC
Q 029029          148 F-FMETSAKTATNVNDIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       148 ~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  179 (200)
                      + ..++|++++++++.+.+.+.+.+....+.+.
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~  457 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVVSPH  457 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhcCCC
Confidence            3 4569999999999999999998887766433

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.9e-15  Score=120.51  Aligned_cols=157  Identities=18%  Similarity=0.233  Sum_probs=112.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC---eEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND---ATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ++.=|.++|+..-|||||+..+-......  ...-|.+.+..-..+.-   ..-.+.|+||||++.|..+...-..-+|+
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            45568899999999999999997544432  23334444443333332   34579999999999999888888888999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC---------cEEEecCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL---------FFMETSAKT  156 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~  156 (200)
                      +|+|++..+.-- .+.   .+.+......+.|+++++||+|..+   ...+....-.+.+++         .++++||++
T Consensus        82 aILVVa~dDGv~-pQT---iEAI~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t  154 (509)
T COG0532          82 AILVVAADDGVM-PQT---IEAINHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT  154 (509)
T ss_pred             EEEEEEccCCcc-hhH---HHHHHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence            999999997311 111   2333333346899999999999864   344444444445554         589999999


Q ss_pred             CCCHHHHHHHHHHhcccc
Q 029029          157 ATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (200)
                      |+|++++++.+.-.....
T Consensus       155 g~Gi~eLL~~ill~aev~  172 (509)
T COG0532         155 GEGIDELLELILLLAEVL  172 (509)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999887666554

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.67  E-value=9e-16  Score=102.29  Aligned_cols=104  Identities=22%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEE--EEEEECCeEEEEEEEeCCCcccc----------ccchhhh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERY----------HSLAPMY   79 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~   79 (200)
                      +|+|+|.+|+|||||+|+|++... .......+.+...  .....++  ..+.++||||....          ..... .
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~   76 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLE-Q   76 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred             CEEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence            699999999999999999996432 1122222222222  3333444  45679999996421          11222 3


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK  124 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK  124 (200)
                      +..+|++++|+|.+++.. +.....+..+.    .++|+++|+||
T Consensus        77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   77 ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            478999999999877422 22333444442    57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00503 prfC peptide chain release factor 3

Probab=99.66  E-value=4.1e-15  Score=122.12  Aligned_cols=118  Identities=14%  Similarity=0.159  Sum_probs=83.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhC-cccCc-------------------ccCcceeeEEEEEEEECCeEEEEEEEeC
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKG-QFIEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDT   66 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   66 (200)
                      ..+..+|+|+|++++|||||+++|+.. .....                   .....|.++......++..+..+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            356779999999999999999998641 11110                   0111244555555666667889999999


Q ss_pred             CCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ||+..+.......+..+|++|+|+|..+.. ......+++....   .++|+++++||+|+.
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            999888776677889999999999998741 1223344443332   468999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.65  E-value=1.6e-15  Score=111.85  Aligned_cols=164  Identities=16%  Similarity=0.276  Sum_probs=108.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMY   79 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~   79 (200)
                      ...+++|++.|.+|+|||||||+|+.+...+...-..+++...... .......+.+||+||.++       ++.....+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~-~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR-LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-hhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            3568999999999999999999999655443221222222211111 122336799999999654       56667778


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC-------CCCHHHHHHHHHH--------
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR-------KVTAEEAQAYAQE--------  144 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~-------~~~~~~~~~~~~~--------  144 (200)
                      +...|+++++++..++.- ..-.+++..+.... .+.++++++|.+|...+-       ..+...++++.+.        
T Consensus       115 l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccc-cCCHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            899999999999988742 22245555555542 347899999999986541       1111112222111        


Q ss_pred             --cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          145 --NGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       145 --~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                        .--|++..+...++|++++...+++.+..
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence              11367888889999999999999998873

>PRK13351 elongation factor G; Reviewed

Probab=99.64  E-value=5.4e-15  Score=125.79  Aligned_cols=118  Identities=16%  Similarity=0.161  Sum_probs=82.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCccc-Cc------------cc---CcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-EF------------QE---STIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~------------~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      +...+|+|+|+.++|||||+++|+..... ..            ..   ...+.+.......+......+++|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            35679999999999999999999853210 00            00   0112222222333334567899999999998


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +...+..++..+|++++|+|.++.........| ..+..   .++|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            888888899999999999999886554433333 33333   3689999999999864

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.64  E-value=1.1e-14  Score=112.50  Aligned_cols=158  Identities=22%  Similarity=0.243  Sum_probs=96.4

Q ss_pred             EEEECCCCCCHHHHHHHHHhCcccC------cccCcceeeEEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 029029           13 LVLLGDVGAGKSSLVLRFVKGQFIE------FQESTIGAAFFSQT---------------LAVND-ATVKFEIWDTAGQ-   69 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~G~-   69 (200)
                      |+++|.+++|||||+++|++.....      ...|..|..+....               ...++ ....+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5899999999999999999765421      12233332222110               00122 3467999999997 


Q ss_pred             ---cccccchhh---hhcCCcEEEEEEeCCC---------------H-HHHHH----HHHH-HH-------HH-------
Q 029029           70 ---ERYHSLAPM---YYRGAAAAIIVYDITN---------------Q-ASFER----AKKW-VQ-------EL-------  108 (200)
Q Consensus        70 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~----~~~~-~~-------~i-------  108 (200)
                         +....+...   .++.+|++++|+|...               | ..++.    +..| +.       .+       
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333434334   3789999999999973               1 11111    1111 00       00       


Q ss_pred             ------------H--------------Hh---------------------CCCCCeEEEEEeCcCccCCCCCCHHHHHHH
Q 029029          109 ------------Q--------------AQ---------------------GNPNMVMALAGNKADLLDARKVTAEEAQAY  141 (200)
Q Consensus       109 ------------~--------------~~---------------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  141 (200)
                                  .              ..                     ....+|+++++||+|+.....    ....+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~----~~~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN----NISKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH----HHHHH
Confidence                        0              00                     013579999999999743221    11122


Q ss_pred             HHH-cCCcEEEecCCCCCCHHHHHH-HHHHhcccc
Q 029029          142 AQE-NGLFFMETSAKTATNVNDIFY-EIAKRLPRV  174 (200)
Q Consensus       142 ~~~-~~~~~~~~Sa~~~~~i~~~~~-~l~~~~~~~  174 (200)
                      ... ....++.+||+.+.+++++.+ .+.+.+.+.
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            222 245699999999999999998 688888654

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.63  E-value=1.5e-15  Score=107.43  Aligned_cols=116  Identities=23%  Similarity=0.358  Sum_probs=72.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhh---hhcCCcE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPM---YYRGAAA   85 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~   85 (200)
                      .-.|+++|+.|||||+|...|..+...+...+...    ...... ......+.++|+||+.+.+.....   +...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~----n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN----NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSE----EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC----CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            45789999999999999999998865443322211    111111 234457999999999988764444   4788999


Q ss_pred             EEEEEeCCC-HHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCcCccC
Q 029029           86 AIIVYDITN-QASFERAKKWVQELQAQ---GNPNMVMALAGNKADLLD  129 (200)
Q Consensus        86 ~i~v~d~~~-~~s~~~~~~~~~~i~~~---~~~~~~~ivv~nK~D~~~  129 (200)
                      +|||+|++. ......+.+++-.+...   .....|+++++||.|+..
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999999985 33455555555444332   246889999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=6.5e-15  Score=117.32  Aligned_cols=166  Identities=18%  Similarity=0.211  Sum_probs=119.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCccc--C-----------cccCcceeeEEEEEEEE---CCeEEEEEEEeCCCccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--E-----------FQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQER   71 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~   71 (200)
                      ++-.++.||-+..-|||||..+|+...-.  .           .....-|.+....+..+   ++..+.+.++||||+-+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            44568999999999999999999863220  0           11122344444443333   35669999999999999


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHHHHHHHcCCcEE
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQENGLFFM  150 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~  150 (200)
                      |.......+..++++|+|+|.++.-.-..+..++..+.    .+..+|.|+||+|+...+. ....++...+.....+.+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            99998889999999999999998644444455544443    3567999999999865431 112234444444455789


Q ss_pred             EecCCCCCCHHHHHHHHHHhccccCCC
Q 029029          151 ETSAKTATNVNDIFYEIAKRLPRVQPA  177 (200)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (200)
                      .+||++|.|+.++++++++.+......
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCCCCCCC
Confidence            999999999999999999999876553

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.63  E-value=5.4e-15  Score=111.97  Aligned_cols=162  Identities=20%  Similarity=0.131  Sum_probs=104.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCcccccc----c---hhhhhcCC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHS----L---APMYYRGA   83 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~   83 (200)
                      -|.+||.|++|||||++.+.+....--..+.  ++..++--.+. .....|.+=|.||..+-..    +   .-..+..+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpF--TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPF--TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCcc--ccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            4679999999999999999865543222222  22333222221 3445699999999532111    1   11235678


Q ss_pred             cEEEEEEeCCCHH---HHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEE-ecCCCC
Q 029029           84 AAAIIVYDITNQA---SFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFME-TSAKTA  157 (200)
Q Consensus        84 d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~  157 (200)
                      .+++.|+|++..+   ..+.......++..+.  -.++|.++|+||+|+....+........+.+..+...+. +||.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            9999999998533   3444444445554442  267899999999997554333333344444444443222 999999


Q ss_pred             CCHHHHHHHHHHhccccC
Q 029029          158 TNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~  175 (200)
                      .|++++...+.+.+....
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999999998888775

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.3e-15  Score=103.72  Aligned_cols=157  Identities=20%  Similarity=0.228  Sum_probs=114.7

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.-|++++|..|+|||||++.|-...... ..|+..-+  +...  ...+..|+-+|.+|+...+..|..++..+|++
T Consensus        17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT--SE~l--~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~i   91 (193)
T KOG0077|consen   17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEEL--SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAI   91 (193)
T ss_pred             hccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC--hHHh--eecCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence            4567899999999999999999998654432 22332211  1122  23457899999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH---Hc-----------C---Cc
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ---EN-----------G---LF  148 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~---~~-----------~---~~  148 (200)
                      ++.+|..+.+.|.+.+..++.+.... -...|+++.+||+|....  ...++.+....   ..           +   +.
T Consensus        92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~e  169 (193)
T KOG0077|consen   92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLE  169 (193)
T ss_pred             EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEE
Confidence            99999999999999887777766543 368999999999997654  34444333221   11           1   13


Q ss_pred             EEEecCCCCCCHHHHHHHHHHh
Q 029029          149 FMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      +|.||...+.+--+.|.|+...
T Consensus       170 vfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  170 VFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEEEccCccceeeeehhhh
Confidence            6788888888877778777654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=6e-15  Score=114.31  Aligned_cols=156  Identities=21%  Similarity=0.208  Sum_probs=106.7

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcc--c---------------------------CcccCcceeeEEEEEEEEC
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQF--I---------------------------EFQESTIGAAFFSQTLAVN   55 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~   55 (200)
                      ....+.++++|+|+..+|||||+-+|+...-  +                           ......-|.+.......++
T Consensus         2 ~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe   81 (428)
T COG5256           2 ASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE   81 (428)
T ss_pred             CCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence            3456789999999999999999999986321  0                           0111223566667777777


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHH------HHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF------ERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      ...+.++++|+||+..+-.-+..-+.+||+.|+|+|.++.+.-      .+.++..-..+..+  -..+||++||+|..+
T Consensus        82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~  159 (428)
T COG5256          82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVS  159 (428)
T ss_pred             cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccc
Confidence            7888999999999888777777778899999999999976311      11222222222222  345888999999876


Q ss_pred             CCCCCHHH----HHHHHHHcC-----CcEEEecCCCCCCHHH
Q 029029          130 ARKVTAEE----AQAYAQENG-----LFFMETSAKTATNVND  162 (200)
Q Consensus       130 ~~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (200)
                      -.+-.+++    +..+.+..+     ++|+++|+..|.|+.+
T Consensus       160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            33322322    222333333     5699999999999876

>PRK09866 hypothetical protein; Provisional

Probab=99.61  E-value=6e-14  Score=114.91  Aligned_cols=110  Identities=19%  Similarity=0.185  Sum_probs=73.8

Q ss_pred             EEEEEEeCCCcccc-----ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029           59 VKFEIWDTAGQERY-----HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV  133 (200)
Q Consensus        59 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~  133 (200)
                      .++.|+||||.+..     ...+...+..+|++++|+|.....+... ...++.+...+ ...|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence            35899999997542     2234446889999999999986422222 22334444432 23599999999998643333


Q ss_pred             CHHHHHHHHH----HcCC---cEEEecCCCCCCHHHHHHHHHHh
Q 029029          134 TAEEAQAYAQ----ENGL---FFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       134 ~~~~~~~~~~----~~~~---~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      ..+.+..+..    ..+.   .+|++||+.|.|++++++.|...
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            3444545432    2222   59999999999999999998873

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.60  E-value=4.7e-14  Score=112.13  Aligned_cols=69  Identities=20%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             CCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH-HHHHHHHhccccCCCCCCCCceeccCC
Q 029029          115 NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND-IFYEIAKRLPRVQPAPNPSGMVLMDRP  189 (200)
Q Consensus       115 ~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~  189 (200)
                      .+|+++|+||.|....+.    ....+.+.....++++||..+.++++ +++.+.+.+... +.+++.+.+ ++++
T Consensus       217 ~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~-p~~~~~d~l-td~~  286 (396)
T PRK09602        217 SKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGD-SDFEILGEL-SEKQ  286 (396)
T ss_pred             CCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCC-CccCccccC-CHHH
Confidence            589999999999643211    12222222345689999999999999 788888877665 457777654 4544

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=6.7e-14  Score=119.00  Aligned_cols=118  Identities=14%  Similarity=0.104  Sum_probs=80.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCccc-C---ccc------------CcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-E---FQE------------STIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~---~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      .+-.+|+|+|+.++|||||+++|+..... .   ...            ...|++.......+...+..+.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            44678999999999999999999752110 0   000            1223333333344434567899999999988


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +...+...+..+|++|+|+|..+.... .....+..+..   .++|+++++||+|+..
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~-qt~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEP-QSETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            777777888999999999999875322 12233333333   3578999999999864

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=2.1e-14  Score=107.84  Aligned_cols=191  Identities=14%  Similarity=0.208  Sum_probs=133.1

Q ss_pred             CCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCccc----Ccce--eeE----------------EEEEEEEC----
Q 029029            2 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIG--AAF----------------FSQTLAVN----   55 (200)
Q Consensus         2 ~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~----~~~~--~~~----------------~~~~~~~~----   55 (200)
                      +.....+.+++|.++|+..-|||||..+|.+ -+....+    .-+.  ..|                +.......    
T Consensus         2 ~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~   80 (415)
T COG5257           2 ADPKHIQPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA   80 (415)
T ss_pred             CccccCCcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence            3334447899999999999999999999985 3321111    0000  000                00000000    


Q ss_pred             --CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-
Q 029029           56 --DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-  132 (200)
Q Consensus        56 --~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-  132 (200)
                        .--..+.|.|.||++-+-..+-+-..-.|++++|++.+++....+..+.+..+.-..  -+.++++-||+|+...+. 
T Consensus        81 ~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~A  158 (415)
T COG5257          81 ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERA  158 (415)
T ss_pred             CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHH
Confidence              123469999999998776666555666899999999998766556666666665553  345899999999976432 


Q ss_pred             -CCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhccccCCCCCCCCceeccCCCCCCCC
Q 029029          133 -VTAEEAQAYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTAS  195 (200)
Q Consensus       133 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (200)
                       -+++++.+|.+.   .+.|++++||..+.||+-+++.|.+.+....-+.......+..|+.+-+.+
T Consensus       159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkP  225 (415)
T COG5257         159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKP  225 (415)
T ss_pred             HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCC
Confidence             245556666553   467999999999999999999999999998888777777777777766554

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.1e-13  Score=110.56  Aligned_cols=157  Identities=15%  Similarity=0.178  Sum_probs=111.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEE--EEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .++.-|-|.|+..-|||||+..|-.....  ....-|.+...  ....++ .+..++|+||||+..|..+...-..-+|+
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI  227 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVA--AGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI  227 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCcee--hhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence            35566889999999999999999754332  22233333333  333444 44789999999999999888888888999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC---------CcEEEecCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG---------LFFMETSAKT  156 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~  156 (200)
                      +++|+...|.- ..+.   .+.+......+.|+++.+||+|..+   .+.+...+-...++         +.++++||++
T Consensus       228 vVLVVAadDGV-mpQT---~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  228 VVLVVAADDGV-MPQT---LEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             EEEEEEccCCc-cHhH---HHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence            99999988731 1111   2334444457899999999999654   44555544444444         3689999999


Q ss_pred             CCCHHHHHHHHHHhcccc
Q 029029          157 ATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (200)
                      |.|++.+-+.+.-+..-+
T Consensus       301 g~nl~~L~eaill~Ae~m  318 (683)
T KOG1145|consen  301 GENLDLLEEAILLLAEVM  318 (683)
T ss_pred             CCChHHHHHHHHHHHHHh
Confidence            999999999877655444

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=2e-13  Score=107.39  Aligned_cols=164  Identities=21%  Similarity=0.228  Sum_probs=118.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccC-------------cccCcceeeEEEE--EEEE---CCeEEEEEEEeCCCcc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE-------------FQESTIGAAFFSQ--TLAV---NDATVKFEIWDTAGQE   70 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~-------------~~~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~G~~   70 (200)
                      +-.+..++-+-.-|||||..+|+.....-             .....-|.+....  ...+   ++..+.+.++||||+-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            34567888999999999999997532210             0111123333332  2222   4578999999999999


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH-HHHHHHcCCc-
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA-QAYAQENGLF-  148 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~-  148 (200)
                      ++.......+..+.+.++++|.+..-.-..+...+..+..    +.-++.|+||+||...   +.+.. .++-...|++ 
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~A---dpervk~eIe~~iGid~  160 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAA---DPERVKQEIEDIIGIDA  160 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCC---CHHHHHHHHHHHhCCCc
Confidence            8888888888899999999999987555666666666644    4568999999999653   33333 3333445663 


Q ss_pred             --EEEecCCCCCCHHHHHHHHHHhccccCCCCC
Q 029029          149 --FMETSAKTATNVNDIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       149 --~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  179 (200)
                        .+.+||++|.||+++++.+++++....++..
T Consensus       161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~  193 (603)
T COG0481         161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPD  193 (603)
T ss_pred             chheeEecccCCCHHHHHHHHHhhCCCCCCCCC
Confidence              7899999999999999999999988776544

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.56  E-value=1.5e-13  Score=100.13  Aligned_cols=159  Identities=18%  Similarity=0.165  Sum_probs=111.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhhh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYY   80 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~   80 (200)
                      ....+|+++|.|++|||||+..++. .... .....-++.......+...+..+++.|.||.-.       ......+..
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~-T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITS-THSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhc-chhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe
Confidence            4578999999999999999999984 3322 222222444455555566677899999999432       123344567


Q ss_pred             cCCcEEEEEEeCCCHHHHHH-HHHHHHHH---------------------------------------------------
Q 029029           81 RGAAAAIIVYDITNQASFER-AKKWVQEL---------------------------------------------------  108 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~-~~~~~~~i---------------------------------------------------  108 (200)
                      +.||++++|+|.+..+.... +.+.++.+                                                   
T Consensus       138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev  217 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV  217 (364)
T ss_pred             ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence            88999999999987554432 23333311                                                   


Q ss_pred             --------------HHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          109 --------------QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       109 --------------~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                                    ...+...++++.|-||+|.     ++.++..+++...+.  +.+|+.-..|++.+++.+++.+.-.
T Consensus       218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L~  290 (364)
T KOG1486|consen  218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNLV  290 (364)
T ss_pred             EEecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhceE
Confidence                          1112236778899999994     677888888888777  5577888899999999999988764


Q ss_pred             C
Q 029029          175 Q  175 (200)
Q Consensus       175 ~  175 (200)
                      +
T Consensus       291 r  291 (364)
T KOG1486|consen  291 R  291 (364)
T ss_pred             E
Confidence            3

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=5.6e-14  Score=99.78  Aligned_cols=156  Identities=19%  Similarity=0.266  Sum_probs=102.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc---CCcEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR---GAAAA   86 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~   86 (200)
                      .-.|+++|+.+||||+|.-.|..+.+...+     +...++...+......+.++|.||+.+.+.....++.   .+-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-----tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV-----TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCee-----eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            357999999999999999999877443222     2233444444333445899999999998877777776   79999


Q ss_pred             EEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCC------CCHHHHHHHH--------------
Q 029029           87 IIVYDITNQ-ASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARK------VTAEEAQAYA--------------  142 (200)
Q Consensus        87 i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~------~~~~~~~~~~--------------  142 (200)
                      |||+|+..- --...+.+++-.+....   ...+|+++..||.|+.-...      ....++..+.              
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            999998742 12333444444333322   46788999999999853211      0011111110              


Q ss_pred             ------------------HHcCCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029          143 ------------------QENGLFFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       143 ------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                                        ....+.|.+.|++++ +++++-+||.+.+
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                              012245888999998 8999999988753

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.56  E-value=7.4e-14  Score=118.78  Aligned_cols=144  Identities=16%  Similarity=0.055  Sum_probs=92.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccC----ccc------------CcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE----FQE------------STIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      .+-.+|+|+|+.++|||||+++|+...-..    ...            ...|++.......+...+..+.+|||||+..
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            345699999999999999999997422110    000            1123444444444444567899999999988


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC----
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL----  147 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~----  147 (200)
                      +...+...+..+|++++|+|..+...... ..++..+..   .++|+++++||+|+....  .......+....+.    
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~~  161 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANAVP  161 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCcee
Confidence            87777888999999999999987533322 233333333   368899999999986532  12223333333332    


Q ss_pred             cEEEecCCCC
Q 029029          148 FFMETSAKTA  157 (200)
Q Consensus       148 ~~~~~Sa~~~  157 (200)
                      ..+++|+..+
T Consensus       162 ~~ipis~~~~  171 (689)
T TIGR00484       162 IQLPIGAEDN  171 (689)
T ss_pred             EEeccccCCC
Confidence            1456666554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.54  E-value=1.8e-14  Score=113.79  Aligned_cols=166  Identities=15%  Similarity=0.119  Sum_probs=118.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc----cc--ch---hh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HS--LA---PM   78 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~--~~---~~   78 (200)
                      ...-+++|+|.|++|||||++.+.....  ...+..-++.......++.....++++||||.-..    +.  .+   ..
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            4566889999999999999998875443  33444434444444455666788999999994211    11  11   12


Q ss_pred             hhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH---HHHHHHHcCCcEEEec
Q 029029           79 YYRGAAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE---AQAYAQENGLFFMETS  153 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~S  153 (200)
                      ..+--.+++|+.|++.  ..+......++..+... ..++|+|+|+||+|+...+.++.+.   +..+....+++++++|
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS  322 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS  322 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence            2334458999999996  45666777788888776 3678999999999998877776654   3333444558999999


Q ss_pred             CCCCCCHHHHHHHHHHhccccCC
Q 029029          154 AKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      +.+.+|+-++....++.+...+-
T Consensus       323 ~~~eegVm~Vrt~ACe~LLa~RV  345 (620)
T KOG1490|consen  323 CVQEEGVMDVRTTACEALLAARV  345 (620)
T ss_pred             ccchhceeeHHHHHHHHHHHHHH
Confidence            99999999988888877766543

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.54  E-value=4.1e-14  Score=103.99  Aligned_cols=168  Identities=17%  Similarity=0.177  Sum_probs=99.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCc--ceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------h---h
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------A---P   77 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~---~   77 (200)
                      ++|+|+|.+||||||++|.+++..........  ............++  ..+.++||||..+....        .   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999987765433211  12223333334444  67899999995322111        1   1


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC-------HHHHHHHHHHcCCc
Q 029029           78 MYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-------AEEAQAYAQENGLF  148 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  148 (200)
                      ....+.|++++|+.... -+..  ...+++..+.... ....++|+.|..|......+.       ...++.+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            12457899999999883 2221  2223344333321 234588888888865543311       12345566667778


Q ss_pred             EEEecCC------CCCCHHHHHHHHHHhccccCCCCCCCC
Q 029029          149 FMETSAK------TATNVNDIFYEIAKRLPRVQPAPNPSG  182 (200)
Q Consensus       149 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~~~~~~~~~  182 (200)
                      |+.++.+      ....+.++++.+-+.+.+..+.++...
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~  196 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNE  196 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-H
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChH
Confidence            8888776      346789999999998888887776554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK00007 elongation factor G; Reviewed

Probab=99.51  E-value=9e-13  Score=112.17  Aligned_cols=117  Identities=15%  Similarity=0.080  Sum_probs=78.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc--cC--ccc------------CcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IE--FQE------------STIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      .+-.+|+|+|++++|||||+++|+...-  ..  ...            ...|.+.......+...+..+.++||||+..
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            3456999999999999999999974111  00  000            1223444443344434467899999999887


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      +.......+..+|++|+|+|....-... ....+..+..   .++|.++++||+|+.
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~~---~~~p~iv~vNK~D~~  140 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQADK---YKVPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHHH---cCCCEEEEEECCCCC
Confidence            7666666788999999999987642222 2233334433   357889999999985

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.50  E-value=6.2e-13  Score=101.30  Aligned_cols=127  Identities=11%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-------hhhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APMY   79 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~   79 (200)
                      ....++|+++|.+|+||||++|+|++..... .+...+.+...........+..+.++||||.......       ...+
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~-vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIAT-VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            4568999999999999999999999655321 1122222222222222224578999999996543211       1111


Q ss_pred             h--cCCcEEEEEEeCCC--HHHH-HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH
Q 029029           80 Y--RGAAAAIIVYDITN--QASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA  135 (200)
Q Consensus        80 ~--~~~d~~i~v~d~~~--~~s~-~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~  135 (200)
                      +  ...|+++||..++.  .... ..+.+.+..+... ....++++++|+.|.......+.
T Consensus       114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~iw~~~IVVfTh~d~~~pd~~~~  173 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-DIWRKSLVVLTHAQFSPPDGLEY  173 (313)
T ss_pred             hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-hhhccEEEEEECCccCCCCCCCH
Confidence            1  26899999965542  1111 1222333333221 23356899999999765444443

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.50  E-value=1e-13  Score=90.18  Aligned_cols=136  Identities=20%  Similarity=0.195  Sum_probs=91.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhhhhcCCcEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMYYRGAAAAI   87 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~~~d~~i   87 (200)
                      |++++|..|+|||||.+.|-+...-  +..+..+++...           -.+||||.--    +..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7999999999999999999754332  222222222111           1359999532    2222233457899999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  166 (200)
                      +|-..+++++.-     -..+...  ...|+|-+++|.|+.++  .+.+..+.+...-|. ++|++|+.++.|+++++..
T Consensus        70 ~v~~and~~s~f-----~p~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRF-----PPGFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccC-----Ccccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            999999875521     1111111  24569999999999864  345567777777776 6999999999999999998


Q ss_pred             HHH
Q 029029          167 IAK  169 (200)
Q Consensus       167 l~~  169 (200)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            765

>PRK12740 elongation factor G; Reviewed

Probab=99.49  E-value=7.1e-13  Score=112.75  Aligned_cols=110  Identities=17%  Similarity=0.109  Sum_probs=74.8

Q ss_pred             ECCCCCCHHHHHHHHHhCccc--C--cc------------cCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q 029029           16 LGDVGAGKSSLVLRFVKGQFI--E--FQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY   79 (200)
Q Consensus        16 vG~~~sGKSsli~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   79 (200)
                      +|+.++|||||+++|+...-.  .  ..            ....|.+.......+...++.+.+|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999653211  0  00            0012333333333444456789999999998877777788


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +..+|++++|+|.+........ ..+..+..   .++|+++++||+|+..
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8999999999999876444332 22233332   4689999999999753

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.48  E-value=1.7e-12  Score=97.88  Aligned_cols=164  Identities=18%  Similarity=0.296  Sum_probs=113.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE--CCeEEEEEEEeCCCccccccchhhhhcCC-
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV--NDATVKFEIWDTAGQERYHSLAPMYYRGA-   83 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-   83 (200)
                      -...-+|+|+|..++||||||.+|.+...   ..+-.|..|.......  .+.-.++.+|-.-|.-.+..+..+.+... 
T Consensus        49 lpsgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats  125 (473)
T KOG3905|consen   49 LPSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATS  125 (473)
T ss_pred             CCCCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccC
Confidence            34567899999999999999999986442   3334444444433333  22345688888888766666665554432 


Q ss_pred             ---cEEEEEEeCCCHHH-HHHHHHHHHHHHHh------------------------------------------------
Q 029029           84 ---AAAIIVYDITNQAS-FERAKKWVQELQAQ------------------------------------------------  111 (200)
Q Consensus        84 ---d~~i~v~d~~~~~s-~~~~~~~~~~i~~~------------------------------------------------  111 (200)
                         .++|++.|+++|.. ++.+++|...+..+                                                
T Consensus       126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d  205 (473)
T KOG3905|consen  126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD  205 (473)
T ss_pred             ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence               47899999999854 45567776532211                                                


Q ss_pred             -------------CCCCCeEEEEEeCcCccC-------CCCCCH----HHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029          112 -------------GNPNMVMALAGNKADLLD-------ARKVTA----EEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus       112 -------------~~~~~~~ivv~nK~D~~~-------~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                                   ..-++|++||++|+|...       .+....    ..++++|..+|..++.+|+++..|++-+..+|
T Consensus       206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi  285 (473)
T KOG3905|consen  206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI  285 (473)
T ss_pred             cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence                         011789999999999832       111111    23788888999999999999999999999999


Q ss_pred             HHhccc
Q 029029          168 AKRLPR  173 (200)
Q Consensus       168 ~~~~~~  173 (200)
                      ..++.-
T Consensus       286 vhr~yG  291 (473)
T KOG3905|consen  286 VHRSYG  291 (473)
T ss_pred             HHHhcC
Confidence            987764

>PRK13768 GTPase; Provisional

Probab=99.48  E-value=4.5e-13  Score=100.92  Aligned_cols=110  Identities=18%  Similarity=0.193  Sum_probs=70.2

Q ss_pred             EEEEEeCCCcccc---ccchhhhh---cC--CcEEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           60 KFEIWDTAGQERY---HSLAPMYY---RG--AAAAIIVYDITNQASFERA--KKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        60 ~~~i~D~~G~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      .+.+||+||+.+.   +..+..++   ..  ++++++++|..........  ..|+...... ..++|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            5999999997653   23332222   22  8999999999754322221  2233222221 24789999999999865


Q ss_pred             CCCCCHHHHHH----------------------------HHHHcC--CcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          130 ARKVTAEEAQA----------------------------YAQENG--LFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       130 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      ..+.  +....                            ..+..+  .+++++|++++.|+++++++|.+.+.
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            4322  11111                            111223  47899999999999999999988774

>TIGR00101 ureG urease accessory protein UreG

Probab=99.47  E-value=1.3e-12  Score=94.94  Aligned_cols=103  Identities=18%  Similarity=0.151  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA  138 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (200)
                      ....++++.|.........   ..+|.+|.|+|..+.+....  .+...+      ...-++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            4567788888432222221   12688999999987544211  111111      112378999999975322333333


Q ss_pred             HHHHHH--cCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          139 QAYAQE--NGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       139 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      .+..+.  .+.+++++||++|.|++++|+++.+.+.
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            444433  5678999999999999999999997654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.47  E-value=1.1e-12  Score=98.35  Aligned_cols=123  Identities=12%  Similarity=0.092  Sum_probs=71.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---c-------
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---L-------   75 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------   75 (200)
                      ....+++|+|+|.+|+|||||+|+|++...... ....+.+...........+..+.+|||||......   .       
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            346689999999999999999999997654321 11212222222222223346799999999654311   1       


Q ss_pred             hhhhhc--CCcEEEEEEeCCCH-HHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           76 APMYYR--GAAAAIIVYDITNQ-ASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        76 ~~~~~~--~~d~~i~v~d~~~~-~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                      ...++.  ..|++++|..++.. ....  .+..++...... ....++++|+||+|...+
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~-~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP-SIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh-hhHhCEEEEEeCCccCCC
Confidence            112232  57888888766532 1121  222233332221 123469999999998643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.6e-12  Score=101.56  Aligned_cols=174  Identities=16%  Similarity=0.146  Sum_probs=125.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh-CcccC-------------------cccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK-GQFIE-------------------FQESTIGAAFFSQTLAVNDATVKFEIWDTA   67 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   67 (200)
                      .++...+||-+|.+|||||-.+|+. +..+.                   .....-|+...+...+++..+..+.++|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            4577899999999999999999764 11110                   112234677888889999999999999999


Q ss_pred             CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--------------
Q 029029           68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--------------  133 (200)
Q Consensus        68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--------------  133 (200)
                      |++++..-+...+.-+|..++|+|....-. .+..++++..+.   .++|++-++||.|......+              
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~  165 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQC  165 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence            999999888888889999999999986421 122344444443   47899999999996331000              


Q ss_pred             ---------------------------------------------C--------HHHHHHHHH-----------------
Q 029029          134 ---------------------------------------------T--------AEEAQAYAQ-----------------  143 (200)
Q Consensus       134 ---------------------------------------------~--------~~~~~~~~~-----------------  143 (200)
                                                                   .        .+...++..                 
T Consensus       166 ~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~f  245 (528)
T COG4108         166 APITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAF  245 (528)
T ss_pred             ecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHH
Confidence                                                         0        000011100                 


Q ss_pred             --HcCCcEEEecCCCCCCHHHHHHHHHHhccccCCCCCCCCcee
Q 029029          144 --ENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVL  185 (200)
Q Consensus       144 --~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~  185 (200)
                        ..-.|+|.-||..+.|++.+++.+++......+.....+.|.
T Consensus       246 l~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~  289 (528)
T COG4108         246 LAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVE  289 (528)
T ss_pred             hcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCccc
Confidence              011378999999999999999999999999888888777664

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.45  E-value=1.5e-12  Score=99.07  Aligned_cols=151  Identities=26%  Similarity=0.275  Sum_probs=108.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCccc------------Cc-------------------ccCcceeeEEEEEEEEC
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI------------EF-------------------QESTIGAAFFSQTLAVN   55 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~------------~~-------------------~~~~~~~~~~~~~~~~~   55 (200)
                      ....+|++-+|...-||||||-+|+.....            +.                   .+...|.+.......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            456789999999999999999999974331            00                   11123455555555566


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029           56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK--KWVQELQAQGNPNMVMALAGNKADLLDARKV  133 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~  133 (200)
                      -...+|.+-||||+++|..-+..-...||+.|+++|.... -+++.+  .++..+...    ..+++.+||+||.+..+-
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLGI----rhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLGI----RHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhCC----cEEEEEEeeecccccCHH
Confidence            6778899999999999998888888899999999999664 222222  223333222    358899999999886654


Q ss_pred             CHHH----HHHHHHHcCC---cEEEecCCCCCCHHH
Q 029029          134 TAEE----AQAYAQENGL---FFMETSAKTATNVND  162 (200)
Q Consensus       134 ~~~~----~~~~~~~~~~---~~~~~Sa~~~~~i~~  162 (200)
                      ..+.    -..++..+++   .++++||..|.|+-.
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            4433    3455666665   589999999998865

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.45  E-value=4.6e-13  Score=114.32  Aligned_cols=119  Identities=20%  Similarity=0.185  Sum_probs=80.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCc---------------ccCc---ccCcceeeEEEEEEEECCeEEEEEEEeCCC
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ---------------FIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAG   68 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   68 (200)
                      ...-.+|+++|+.++|||||+++|+...               +...   ...+............+..++.+.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            3456799999999999999999997521               1110   111222222222333566788999999999


Q ss_pred             ccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +..+.......+..+|++|+|+|..+...... ...+.....   .+.|.++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhccc
Confidence            99888777888999999999999876422211 122222222   3567889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.44  E-value=2.6e-12  Score=86.25  Aligned_cols=114  Identities=30%  Similarity=0.400  Sum_probs=80.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCccc-CcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +|++++|..|+|||+|+.++....+...+. ++.+                           +......+.++++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997655543222 2221                           222334456788999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      |+.....+++.+  |...+......+.|.++++||.|+.+......+..        ..++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999888765  77777665556788999999999854333333222        245678899999874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.43  E-value=6.7e-13  Score=99.46  Aligned_cols=99  Identities=21%  Similarity=0.312  Sum_probs=79.4

Q ss_pred             cccccchhhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc
Q 029029           70 ERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF  148 (200)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  148 (200)
                      +++..+.+.++.++|++++|+|+.++. +++.+.+|+..+..   .++|+++|+||+|+.+.+....+....+ +..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            567777788999999999999999877 78899999876654   5789999999999975444333344444 457889


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhcc
Q 029029          149 FMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      ++++||++|.|++++|+.+.+.+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~~~~~  123 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQNRIS  123 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcCCEE
Confidence            999999999999999998876443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.43  E-value=4.4e-12  Score=110.40  Aligned_cols=105  Identities=23%  Similarity=0.269  Sum_probs=73.1

Q ss_pred             EEEEeCCCccccccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC---
Q 029029           61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT---  134 (200)
Q Consensus        61 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~---  134 (200)
                      +.||||||++.+..+....+..+|++++|+|.++   +.+++.+    ..+..   .++|+++++||+|+.......   
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~  600 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDE  600 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccch
Confidence            8999999999988777777888999999999986   3343332    23332   357999999999985422110   


Q ss_pred             ---------HHH----HH----HH---HHHc---------------CCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          135 ---------AEE----AQ----AY---AQEN---------------GLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       135 ---------~~~----~~----~~---~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                               .+.    ..    ..   ...+               .++++++||++|.|+++++.+|.....
T Consensus       601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                     010    10    00   0111               357999999999999999998876544

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.42  E-value=1.3e-12  Score=96.38  Aligned_cols=174  Identities=14%  Similarity=0.180  Sum_probs=102.1

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcc--------------eeeEE----------------------
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI--------------GAAFF----------------------   48 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~--------------~~~~~----------------------   48 (200)
                      +..++++-|+++|..||||||++++|..-.......+..              .++..                      
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T   93 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT   93 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence            456788999999999999999999997532221111110              00000                      


Q ss_pred             -E-----------EEEEECCeEEEEEEEeCCCccccccc------hhhhh--cCCcEEEEEEeCCC---HHHHHHHHHHH
Q 029029           49 -S-----------QTLAVNDATVKFEIWDTAGQERYHSL------APMYY--RGAAAAIIVYDITN---QASFERAKKWV  105 (200)
Q Consensus        49 -~-----------~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~v~d~~~---~~s~~~~~~~~  105 (200)
                       .           ..+.-........++||||+.+....      ....+  ...-+++|++|...   +-+|=.-.-+-
T Consensus        94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA  173 (366)
T KOG1532|consen   94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA  173 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence             0           00000122345899999998643221      11112  23567888888753   43332222222


Q ss_pred             HHHHHhCCCCCeEEEEEeCcCccCCCCC-----CHHHHHHHHH---------------------HcCCcEEEecCCCCCC
Q 029029          106 QELQAQGNPNMVMALAGNKADLLDARKV-----TAEEAQAYAQ---------------------ENGLFFMETSAKTATN  159 (200)
Q Consensus       106 ~~i~~~~~~~~~~ivv~nK~D~~~~~~~-----~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~~  159 (200)
                      ..+...  ...|++++.||.|+.+....     +.+..+...+                     -.++..+-+|+.+|.|
T Consensus       174 cSilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G  251 (366)
T KOG1532|consen  174 CSILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG  251 (366)
T ss_pred             HHHHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence            333333  57899999999998764211     1111111111                     1245789999999999


Q ss_pred             HHHHHHHHHHhccccCCCCCC
Q 029029          160 VNDIFYEIAKRLPRVQPAPNP  180 (200)
Q Consensus       160 i~~~~~~l~~~~~~~~~~~~~  180 (200)
                      .+++|..+.+.+.+....+.|
T Consensus       252 ~ddf~~av~~~vdEy~~~ykp  272 (366)
T KOG1532|consen  252 FDDFFTAVDESVDEYEEEYKP  272 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            999999998888776655554

>cd00066 G-alpha G protein alpha subunit

Probab=99.41  E-value=6.9e-12  Score=97.44  Aligned_cols=118  Identities=18%  Similarity=0.255  Sum_probs=85.2

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKA  125 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~  125 (200)
                      .+..+.+||++|+...+..|..++.+++++|+|+|.++.          ..+.+....+..+.... ..++|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            457799999999999999999999999999999999873          33444445555555432 2689999999999


Q ss_pred             CccCCC----------------CCCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          126 DLLDAR----------------KVTAEEAQAYAQE----------NGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       126 D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      |+....                ..+.+.+..+...          ..+..+.++|.+..+++.+|+.+.+.+...
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            963311                1234444444322          123356788999999999999888877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.40  E-value=8.9e-12  Score=100.65  Aligned_cols=166  Identities=18%  Similarity=0.330  Sum_probs=115.6

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC--eEEEEEEEeCCCccccccchhhhhcC-
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND--ATVKFEIWDTAGQERYHSLAPMYYRG-   82 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~-   82 (200)
                      +....-.|+|+|..++||||||.+|.+..   ...+..+.+|.......++  ...++.+|...|...+..+.+..+.. 
T Consensus        21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~   97 (472)
T PF05783_consen   21 KLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE   97 (472)
T ss_pred             cCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence            34556899999999999999999987533   2345556666555444322  23568999998876676666665543 


Q ss_pred             ---CcEEEEEEeCCCHHHH-HHHHHHHHHHHHh-------------------------------C---------------
Q 029029           83 ---AAAAIIVYDITNQASF-ERAKKWVQELQAQ-------------------------------G---------------  112 (200)
Q Consensus        83 ---~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~-------------------------------~---------------  112 (200)
                         --++|+|+|.+.|..+ +.+..|+..+..+                               .               
T Consensus        98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~  177 (472)
T PF05783_consen   98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS  177 (472)
T ss_pred             cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence               2478999999998653 4556665422110                               0               


Q ss_pred             ----------------CCCCeEEEEEeCcCccCC----CCC-------CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029          113 ----------------NPNMVMALAGNKADLLDA----RKV-------TAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus       113 ----------------~~~~~~ivv~nK~D~~~~----~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                                      .-++|++||++|.|....    ...       -...++.+|..+|..+|.||+++..+++.++.
T Consensus       178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~  257 (472)
T PF05783_consen  178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK  257 (472)
T ss_pred             ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence                            015899999999997431    111       11337788888999999999999999999999


Q ss_pred             HHHHhcccc
Q 029029          166 EIAKRLPRV  174 (200)
Q Consensus       166 ~l~~~~~~~  174 (200)
                      +|..++...
T Consensus       258 yi~h~l~~~  266 (472)
T PF05783_consen  258 YILHRLYGF  266 (472)
T ss_pred             HHHHHhccC
Confidence            988887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.39  E-value=1e-11  Score=97.73  Aligned_cols=163  Identities=19%  Similarity=0.227  Sum_probs=114.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCccc--C------------cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFI--E------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL   75 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   75 (200)
                      -.+|+|+-+..-|||||+..|+.+.-.  .            .....-|.+...+...+...++.+.+.||||+..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            357999999999999999999864321  1            11222356666666666677799999999999999999


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC-CCHHHHHHHHHH-------cCC
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQE-------NGL  147 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~  147 (200)
                      .+..++.+|++++++|..+. .+.+.+-.++.-..   .+.+.|||+||+|....+. ...++...++..       +..
T Consensus        85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            99999999999999999873 12222222222222   3566788999999865432 122334444443       446


Q ss_pred             cEEEecCCCC----------CCHHHHHHHHHHhccccCC
Q 029029          148 FFMETSAKTA----------TNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       148 ~~~~~Sa~~~----------~~i~~~~~~l~~~~~~~~~  176 (200)
                      |++..|+..|          .++.-+|+.|++.+.....
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence            8888888766          4677899999988877664

>PTZ00258 GTP-binding protein; Provisional

Probab=99.39  E-value=9.9e-12  Score=98.11  Aligned_cols=86  Identities=22%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE--CCe---------------EEEEEEEeCCC
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV--NDA---------------TVKFEIWDTAG   68 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~i~D~~G   68 (200)
                      .....++|+++|.|++|||||+|+|++....  ....++++..+....+  .+.               +..++++|+||
T Consensus        17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG   94 (390)
T PTZ00258         17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG   94 (390)
T ss_pred             cCCCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence            4466789999999999999999999865432  2223333333333222  211               23599999999


Q ss_pred             ccccc----cc---hhhhhcCCcEEEEEEeCC
Q 029029           69 QERYH----SL---APMYYRGAAAAIIVYDIT   93 (200)
Q Consensus        69 ~~~~~----~~---~~~~~~~~d~~i~v~d~~   93 (200)
                      ...-.    .+   .-..++.+|++++|+|..
T Consensus        95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            54211    11   112357899999999973

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.39  E-value=5.4e-12  Score=97.85  Aligned_cols=106  Identities=11%  Similarity=0.028  Sum_probs=67.8

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CH
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TA  135 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~  135 (200)
                      ++.+.|+||+|......   .....+|.++++.+....+.....   ...+...     .-++|+||.|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~---k~gi~E~-----aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI---KKGIMEL-----ADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH---Hhhhhhh-----hheEEeehhcccchhHHHHHH
Confidence            46799999999763332   256789999999775444333222   1212221     23789999998653211  11


Q ss_pred             HHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          136 EEAQAYAQE-------NGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      .+++.....       +..+++.+||.++.|++++++.+.+.+...
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            222222221       235799999999999999999999987633

>cd01882 BMS1 Bms1

Probab=99.38  E-value=1.3e-11  Score=91.57  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ...+..|+++|++|+|||||++.|++...........|.    ..+ ....+..+.++||||..  . ........+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEE
Confidence            456788999999999999999999854222212222221    111 12246678999999864  2 222346789999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCCC---HHHHHH-HHH--HcCCcEEEecCCCCC
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVT---AEEAQA-YAQ--ENGLFFMETSAKTAT  158 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~~---~~~~~~-~~~--~~~~~~~~~Sa~~~~  158 (200)
                      ++++|.+...... ....+..+...   +.| +++|+||.|+.+.....   .+.++. +..  ..+.+++.+||+++-
T Consensus       108 llviDa~~~~~~~-~~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         108 LLLIDASFGFEME-TFEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEEecCcCCCHH-HHHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            9999997643221 12333334333   456 45599999986432111   112222 221  134589999999873

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.37  E-value=2.3e-11  Score=98.01  Aligned_cols=163  Identities=18%  Similarity=0.226  Sum_probs=118.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ..-++..++|+.++|||.|++.++++.+......+....+..+.....+....+.+-|.+-. ........- ..+|++.
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            34577899999999999999999988776655555555555666666666667778787654 222222222 6799999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~  166 (200)
                      ++||++++.+|..+...++.-...  ...|+++|++|+|+.+..+...-.-.+++..++++ -+.+|.+.... .++|..
T Consensus       501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k  577 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK  577 (625)
T ss_pred             EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence            999999999998887766555444  67899999999999765433322237888888884 55666665334 899999


Q ss_pred             HHHhccccC
Q 029029          167 IAKRLPRVQ  175 (200)
Q Consensus       167 l~~~~~~~~  175 (200)
                      |...+.-.+
T Consensus       578 L~~~A~~Ph  586 (625)
T KOG1707|consen  578 LATMAQYPH  586 (625)
T ss_pred             HHHhhhCCC
Confidence            998887766

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.37  E-value=1.5e-11  Score=96.41  Aligned_cols=160  Identities=14%  Similarity=0.230  Sum_probs=101.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccC--------------cccCcce---eeEEEEE-------EEE-CCeEEEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE--------------FQESTIG---AAFFSQT-------LAV-NDATVKFE   62 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~--------------~~~~~~~---~~~~~~~-------~~~-~~~~~~~~   62 (200)
                      +.++-|+|+|+.++||||||++|.+....+              ..++..|   ++..++.       +.. ++...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            568899999999999999999999762211              2334445   3333332       222 45567899


Q ss_pred             EEeCCCcccc--------cc---------------------chhhhhc-CCcEEEEEE-eCC----CHHHHHHH-HHHHH
Q 029029           63 IWDTAGQERY--------HS---------------------LAPMYYR-GAAAAIIVY-DIT----NQASFERA-KKWVQ  106 (200)
Q Consensus        63 i~D~~G~~~~--------~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~  106 (200)
                      ++||+|...-        ..                     -+...+. .+|+.|+|. |.+    .++.+... .+++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999993211        11                     0223345 789999988 764    12223332 46666


Q ss_pred             HHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC--CCCHHHHHHHHHHhcc
Q 029029          107 ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT--ATNVNDIFYEIAKRLP  172 (200)
Q Consensus       107 ~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~~~  172 (200)
                      .++..   ++|+++++|+.|.....  ..+....+..+++++++.+|+..  ...|..+++.++....
T Consensus       175 eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP  237 (492)
T TIGR02836       175 ELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP  237 (492)
T ss_pred             HHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence            66664   78999999999943221  33444566677888877777644  4567777766655443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.36  E-value=1e-11  Score=90.95  Aligned_cols=149  Identities=16%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCc------------cc----CcceeeEEEEEEE------------------E
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF------------QE----STIGAAFFSQTLA------------------V   54 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~------------~~----~~~~~~~~~~~~~------------------~   54 (200)
                      ....|+|+|+.|+|||||+++++.......            ..    ...+...  ....                  .
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~--~~l~~gcic~~~~~~~~~~l~~~   98 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPA--IQINTGKECHLDAHMVAHALEDL   98 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcE--EEEcCCCcccCChHHHHHHHHHh
Confidence            467899999999999999999985311100            00    0000000  0000                  0


Q ss_pred             CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029           55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT  134 (200)
Q Consensus        55 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~  134 (200)
                      ......+.++|+.|.-...   ..+....+..+.++|..+.+..  ..... ..     ...|.++++||.|+.+.....
T Consensus        99 ~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~  167 (207)
T TIGR00073        99 PLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYP-GM-----FKEADLIVINKADLAEAVGFD  167 (207)
T ss_pred             ccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhH-hH-----HhhCCEEEEEHHHccccchhh
Confidence            0012357777777721100   0111234555677777654221  11111 11     235679999999996543223


Q ss_pred             HHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHh
Q 029029          135 AEEAQAYAQEN--GLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       135 ~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      ........+..  ..+++++||+++.|++++++++.+.
T Consensus       168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            33344444443  3789999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.36  E-value=3.8e-13  Score=100.15  Aligned_cols=112  Identities=16%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             EEEEEeCCCccccccchhhhh--------cCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           60 KFEIWDTAGQERYHSLAPMYY--------RGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        60 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                      .+.++|||||.++...+....        ...-++++++|..-... ...+..++..+...-..+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            489999999987766655543        44568889999863221 222333333333222247899999999999762


Q ss_pred             CC-------CC------------HHHHHHHHHH---cC-C-cEEEecCCCCCCHHHHHHHHHHhc
Q 029029          131 RK-------VT------------AEEAQAYAQE---NG-L-FFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       131 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ..       .+            ....+.++..   .+ + +++++|+.+++++.+++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            20       00            0001111111   12 3 699999999999999999876643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.35  E-value=2.6e-11  Score=103.94  Aligned_cols=117  Identities=16%  Similarity=0.178  Sum_probs=77.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCccc-----------C---cceeeEEE----EEEEECCeEEEEEEEeCCCc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-----------S---TIGAAFFS----QTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~-----------~---~~~~~~~~----~~~~~~~~~~~~~i~D~~G~   69 (200)
                      .+-.+|+++|+.++|||||+++|+...-.....           +   .-|.+...    .....++.+..+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            445679999999999999999998632110000           0   00111111    11223445788999999999


Q ss_pred             cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      .++.......+..+|++|+|+|....... .....+......   +.|.++++||+|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc---CCCeEEEEECchhh
Confidence            98887778888999999999998864222 222223332222   45778999999975

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.35  E-value=8.5e-12  Score=97.53  Aligned_cols=159  Identities=17%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCccee---eEEEEEEEECCeEEEEEEEeCCCccccccchhhh-----
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGA---AFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-----   79 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----   79 (200)
                      ..+++|+|+|.+|+|||||||+|.|-..........|+   +........+ ..-++.+||.||..........|     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            45789999999999999999999753332222222221   1112222211 11249999999965433333333     


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEeCcCcc--C-----CCCCC----HHHHHHHHHH---
Q 029029           80 YRGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLL--D-----ARKVT----AEEAQAYAQE---  144 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ivv~nK~D~~--~-----~~~~~----~~~~~~~~~~---  144 (200)
                      +..-|.+|++.+-.    |..... +.+.+...   ++|+++|-+|+|..  +     ++...    .+.+++.+..   
T Consensus       112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  112 FYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ  184 (376)
T ss_dssp             GGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence            45678888876532    333332 33445444   78899999999961  1     11112    2233333322   


Q ss_pred             -cCC---cEEEecCCCC--CCHHHHHHHHHHhcccc
Q 029029          145 -NGL---FFMETSAKTA--TNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       145 -~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~~~~  174 (200)
                       .++   ++|-+|..+-  .++-.+.+.|.+.+...
T Consensus       185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence             344   5889998874  46777888887777654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=6.5e-11  Score=90.21  Aligned_cols=167  Identities=18%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc----c---CcccCcceeeEEEEEEE-------ECCeEEEEEEEeCCCccccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF----I---EFQESTIGAAFFSQTLA-------VNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~----~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~G~~~~~   73 (200)
                      ..++++.++|+..||||||.++|..-..    +   ......+..+..-....       -.+...++.+.|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            3459999999999999999999864221    1   11111111111111111       13456789999999997654


Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--HH-HHHHHH---H--
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLLDARKVTA--EE-AQAYAQ---E--  144 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~-~~~~~~---~--  144 (200)
                      +.......-.|..++|+|......-...+- .+-++     .....++|+||+|...+++...  ++ ..+..+   .  
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            444444455789999999986422111111 11111     2234788899999865433221  11 112211   1  


Q ss_pred             --cCCcEEEecCCCC----CCHHHHHHHHHHhccccCCCCC
Q 029029          145 --NGLFFMETSAKTA----TNVNDIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       145 --~~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~~~~  179 (200)
                        .+.|++++||..|    ..+.++.+.|..++-+...+..
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~  200 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE  200 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence              2368999999999    8899999998888877665544

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.33  E-value=2.4e-11  Score=86.07  Aligned_cols=62  Identities=21%  Similarity=0.197  Sum_probs=42.8

Q ss_pred             EEEEeCCCccc----cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCc
Q 029029           61 FEIWDTAGQER----YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA  125 (200)
Q Consensus        61 ~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~  125 (200)
                      +.|+||||...    ....+..++..+|++|+|.+.+..........+.+.....   ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            99999999642    3356677889999999999999865544444444444333   23388899985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>smart00275 G_alpha G protein alpha subunit

Probab=99.32  E-value=3.9e-11  Score=94.03  Aligned_cols=118  Identities=16%  Similarity=0.244  Sum_probs=83.3

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKA  125 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~  125 (200)
                      ....+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....++.+.... ..+.|+++++||.
T Consensus       182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~  261 (342)
T smart00275      182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI  261 (342)
T ss_pred             CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence            345689999999999999999999999999999999963          23444445555555532 3679999999999


Q ss_pred             CccCCC---------------CCCHHHHHHHHHH-----c------CCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          126 DLLDAR---------------KVTAEEAQAYAQE-----N------GLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       126 D~~~~~---------------~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      |+....               ..+.+.+..+...     .      .+..+.++|.+..++..+|+.+.+.+...
T Consensus       262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            974310               1233333333321     1      13355788999999999998887766543

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.32  E-value=5.2e-12  Score=100.96  Aligned_cols=184  Identities=20%  Similarity=0.348  Sum_probs=138.0

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ...-+++|+.|+|..++|||+|+++++.+.+.....+.-|  .+..++..++....+.+.|.+|...     ..|...+|
T Consensus        25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvd   97 (749)
T KOG0705|consen   25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVD   97 (749)
T ss_pred             ecccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhcc
Confidence            4556799999999999999999999999998876655544  5677777788888899999988432     34556799


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccC--CCCCCHHHHHHH-HHHcCCcEEEecCCCCCCH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLD--ARKVTAEEAQAY-AQENGLFFMETSAKTATNV  160 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ++||||...+..+|+.+..+...+..+ ....+|+++++++.-...  .+.+..+..+++ ++...+.+|++++.+|.++
T Consensus        98 avIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv  177 (749)
T KOG0705|consen   98 AVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV  177 (749)
T ss_pred             ceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence            999999999999998887766665543 346788888888765532  333444444444 4445678999999999999


Q ss_pred             HHHHHHHHHhccccCCCCCCCCceeccCCCCCCCC
Q 029029          161 NDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTAS  195 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (200)
                      ...|..++.++............+..+.|...+++
T Consensus       178 ~rvf~~~~~k~i~~~~~qq~~~~~~~s~~~s~~~s  212 (749)
T KOG0705|consen  178 ERVFQEVAQKIVQLRKYQQLPASSSKSLPESPSHS  212 (749)
T ss_pred             HHHHHHHHHHHHHHHhhhhcccccccccccCCccc
Confidence            99999999888877655555555555666655544

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.32  E-value=5.1e-11  Score=84.11  Aligned_cols=152  Identities=17%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             Cccc-eeEEEECCCCCCHHHHHHHHHhCcccCcccCc------------------ceeeEEEEEE---------------
Q 029029            7 KNIN-AKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST------------------IGAAFFSQTL---------------   52 (200)
Q Consensus         7 ~~~~-~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~------------------~~~~~~~~~~---------------   52 (200)
                      .+++ ++|.|.|++|||||+|+.+++..... .+...                  .+........               
T Consensus         9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~-~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai   87 (202)
T COG0378           9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKD-EYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAI   87 (202)
T ss_pred             hcCceEEEEecCCCCcCHHHHHHHHHHHHHh-hCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHH
Confidence            3455 89999999999999999998742211 11100                  0000000000               


Q ss_pred             ---EECCeEEEEEEEeCCCccccccchhhhhcCCc-EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           53 ---AVNDATVKFEIWDTAGQERYHSLAPMYYRGAA-AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        53 ---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                         ...+....+.|++..| .-   ....-+.-.| .-|+|+|....+--.  ++-...+      ...-++|+||.|+.
T Consensus        88 ~~l~~~~~~~Dll~iEs~G-NL---~~~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i------~~aDllVInK~DLa  155 (202)
T COG0378          88 EELVLDFPDLDLLFIESVG-NL---VCPFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGI------FKADLLVINKTDLA  155 (202)
T ss_pred             HHHhhcCCcCCEEEEecCc-ce---ecccCcchhhceEEEEEECCCCCCCc--ccCCCce------eEeeEEEEehHHhH
Confidence               0011113566666666 11   1111122344 888889988653210  0000000      11357899999999


Q ss_pred             CCCCCCHHHHHHHHHH--cCCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029          129 DARKVTAEEAQAYAQE--NGLFFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ..-..+.+...+.+++  .+.+++.+|+++|.|+++++.|+....
T Consensus       156 ~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         156 PYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            8777777777666665  457899999999999999999987654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.31  E-value=3.1e-12  Score=96.47  Aligned_cols=152  Identities=17%  Similarity=0.151  Sum_probs=100.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhhh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMYY   80 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   80 (200)
                      ..-|++||.+++||||||++|++....++..-....+......+++. +..+.+.||.|.-.         |+... .-.
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATL-eeV  255 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATL-EEV  255 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHH-HHH
Confidence            45689999999999999999996655554444444443333444433 34588899999421         12111 124


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe----EEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV----MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT  156 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (200)
                      ..+|+++-|.|+++|..-.+....+..+....-+..|    ++=|-||+|..+... .       .+.++  -+.+||.+
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n~--~v~isalt  325 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKNL--DVGISALT  325 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccCC--cccccccc
Confidence            6799999999999997766656666666665443333    455678888644211 1       12233  47899999


Q ss_pred             CCCHHHHHHHHHHhccc
Q 029029          157 ATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~  173 (200)
                      |.|++++...+-.+...
T Consensus       326 gdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  326 GDGLEELLKAEETKVAS  342 (410)
T ss_pred             CccHHHHHHHHHHHhhh
Confidence            99999999988776654

>PTZ00416 elongation factor 2; Provisional

Probab=99.30  E-value=1.3e-11  Score=106.84  Aligned_cols=117  Identities=19%  Similarity=0.181  Sum_probs=78.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccC--c------------ccCcceeeEEE--EEEEEC--------CeEEEEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE--F------------QESTIGAAFFS--QTLAVN--------DATVKFEI   63 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~--~------------~~~~~~~~~~~--~~~~~~--------~~~~~~~i   63 (200)
                      .+-.+|+|+|+.++|||||+++|+...-.-  .            ....-|.+...  ......        +.++.+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            445699999999999999999998632110  0            00001112211  112221        22577999


Q ss_pred             EeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           64 WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        64 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      +||||+.++.......+..+|++|+|+|..+.-.. .....+..+..   .++|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH---cCCCEEEEEEChhhh
Confidence            99999998877778888999999999999874222 22233444443   357999999999985

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.30  E-value=1.4e-11  Score=106.87  Aligned_cols=119  Identities=19%  Similarity=0.206  Sum_probs=79.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCccc--C---------cc---cCcceeeEEE--EEEEE--------------C
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------FQ---ESTIGAAFFS--QTLAV--------------N   55 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~---------~~---~~~~~~~~~~--~~~~~--------------~   55 (200)
                      +..+-.+|+|+|+.++|||||+++|+...-.  .         ..   ...-|.+...  .....              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            3455669999999999999999999864321  0         00   0001122221  11111              2


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           56 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ..++.+.++||||+.++.......+..+|++|+|+|..+.-.... +..+.....   .++|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence            236789999999999988888888899999999999987533222 233333333   468999999999986

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.29  E-value=4.1e-11  Score=91.35  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcc----------cCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---ccc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---HSL   75 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~~~   75 (200)
                      ..++|+|+|.+|+|||||||.|++.......          ..+..+.........++....+.++||||....   ...
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4789999999999999999999975443321          112223333445555778899999999993211   000


Q ss_pred             hhh------------------------hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           76 APM------------------------YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        76 ~~~------------------------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      +..                        .=...|+++|.++++...--..-...++.+.    ..+++|.|+.|+|.....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence            000                        0124789999999865211111123344443    347799999999975433


Q ss_pred             CCC--HHHHHHHHHHcCCcEEEecC
Q 029029          132 KVT--AEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~~~Sa  154 (200)
                      ++.  ...+....+.+++++|....
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHHHcCceeecccc
Confidence            221  23344455667887665443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.28  E-value=2.1e-10  Score=89.76  Aligned_cols=81  Identities=21%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEE--EEEECCe---------------EEEEEEEeCCCccccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ--TLAVNDA---------------TVKFEIWDTAGQERYH   73 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~i~D~~G~~~~~   73 (200)
                      ++|+++|.|++|||||+|+|++....  ....++++..+.  ...+.+.               ...+.+.|+||...-.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCe--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            78999999999999999999976532  222222332222  2222221               1359999999954211


Q ss_pred             ----cchhh---hhcCCcEEEEEEeCC
Q 029029           74 ----SLAPM---YYRGAAAAIIVYDIT   93 (200)
Q Consensus        74 ----~~~~~---~~~~~d~~i~v~d~~   93 (200)
                          .+...   .++.+|++++|+|..
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                11112   357899999999974

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.28  E-value=2e-11  Score=89.48  Aligned_cols=162  Identities=17%  Similarity=0.165  Sum_probs=107.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-------cccchhhhhcC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYYRG   82 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   82 (200)
                      ..++.++|.|++||||++..|. +.+.+ .....+++............-++++.|.||.-+       .........+.
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~-g~~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLT-GTFSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhc-CCCCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence            4589999999999999999998 44433 334444555555444555667899999999432       22334445678


Q ss_pred             CcEEEEEEeCCCHHHHHHH-HHHHHHH-----------------------------------------------------
Q 029029           83 AAAAIIVYDITNQASFERA-KKWVQEL-----------------------------------------------------  108 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~-~~~~~~i-----------------------------------------------------  108 (200)
                      ++++++|+|...|-+...+ +..++.+                                                     
T Consensus       137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da  216 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA  216 (358)
T ss_pred             ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence            9999999998877655443 2322200                                                     


Q ss_pred             --------HHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHHHHHhccccCCCCC
Q 029029          109 --------QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       109 --------~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  179 (200)
                              ...+...+|.+++.||+|...-++.+.        .+.++ .+++||.+++|++++++.+.+.+.-.+....
T Consensus       217 T~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi--------i~~iphavpISA~~~wn~d~lL~~mweyL~LvriYtk  288 (358)
T KOG1487|consen  217 TADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI--------IYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTK  288 (358)
T ss_pred             chhhhhhhhccCceeeeeeeeecccceeeeeccce--------eeeccceeecccccccchHHHHHHHhhcchheEEecC
Confidence                    000112678888999998644332221        12333 5799999999999999999998776544444


Q ss_pred             CC
Q 029029          180 PS  181 (200)
Q Consensus       180 ~~  181 (200)
                      |.
T Consensus       289 PK  290 (358)
T KOG1487|consen  289 PK  290 (358)
T ss_pred             CC
Confidence            43

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=7.6e-11  Score=95.08  Aligned_cols=154  Identities=22%  Similarity=0.254  Sum_probs=106.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCccc-----------------------------CcccCcceeeEEEEEEEECCeE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI-----------------------------EFQESTIGAAFFSQTLAVNDAT   58 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (200)
                      ...+..+++|+..+|||||+.+|+...-.                             ......-|++.......++...
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            46789999999999999999998762111                             1122234677777777888888


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNMVMALAGNKADLLDARK  132 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~  132 (200)
                      ..++++|+||+..|-.-+..-...+|+.|+|+|.+..+   .|+   +.++....++..+  -..++|++||+|+.+-.+
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq  332 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQ  332 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccH
Confidence            89999999998888777777778899999999998532   122   2234444444443  345888999999865332


Q ss_pred             CCHHHH----HHHH-HHcC-----CcEEEecCCCCCCHHHH
Q 029029          133 VTAEEA----QAYA-QENG-----LFFMETSAKTATNVNDI  163 (200)
Q Consensus       133 ~~~~~~----~~~~-~~~~-----~~~~~~Sa~~~~~i~~~  163 (200)
                      -..+++    ..+. +..|     +.|+++|+.+|+|+-..
T Consensus       333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            222222    2222 2333     46999999999987653

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.24  E-value=9.6e-11  Score=90.52  Aligned_cols=104  Identities=16%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA--  135 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~--  135 (200)
                      ++.+.|+||+|.....   ......+|.++++.+...   .+++......+     ..+|.++++||+|+........  
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            5679999999854222   235667888888854432   33333333333     2466799999999865322110  


Q ss_pred             H----HHHHHHH---HcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          136 E----EAQAYAQ---ENGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       136 ~----~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      .    ....+..   .+..+++.+||+++.|++++++++.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            0    0111111   12346899999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=4.4e-11  Score=98.74  Aligned_cols=162  Identities=20%  Similarity=0.221  Sum_probs=103.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCc----ccCcceeeEEEEEE------------EECCeEEEEEEEeCCCcccc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF----QESTIGAAFFSQTL------------AVNDATVKFEIWDTAGQERY   72 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~   72 (200)
                      +..=+.|+|+..+|||-|+..+-+......    ....+|.++++..-            .....--.+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            344578999999999999999975433221    12234444444320            00011123889999999999


Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----CCH---------HH--
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----VTA---------EE--  137 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----~~~---------~~--  137 (200)
                      ..+.......+|++|+|+|+-+.-....    ++.+......+.|+||.+||+|..-...    .+.         +-  
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqt----iESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQT----IESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcch----hHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            9999999999999999999986411111    2222222335789999999999632110    000         00  


Q ss_pred             ---------HHHHHHH-cC-------------CcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          138 ---------AQAYAQE-NG-------------LFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       138 ---------~~~~~~~-~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                               +..++.. ++             +.++++||.+|.||-+++.+|++..+..
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence                     1111110 11             2477999999999999999999877654

>cd01900 YchF YchF subfamily

Probab=99.20  E-value=3.5e-10  Score=85.71  Aligned_cols=81  Identities=20%  Similarity=0.095  Sum_probs=49.4

Q ss_pred             EEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCcccc----c
Q 029029           13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY----H   73 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~----~   73 (200)
                      |+++|.|++|||||+|+|++........+..+.+.......+.+.               ...++++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            589999999999999999976552221122221222222222221               235999999995421    1


Q ss_pred             cchhh---hhcCCcEEEEEEeCC
Q 029029           74 SLAPM---YYRGAAAAIIVYDIT   93 (200)
Q Consensus        74 ~~~~~---~~~~~d~~i~v~d~~   93 (200)
                      .+...   .++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            11122   356899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.20  E-value=5.7e-11  Score=85.70  Aligned_cols=147  Identities=21%  Similarity=0.319  Sum_probs=92.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCcccc-----ccchhhhhcC
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERY-----HSLAPMYYRG   82 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~-----~~~~~~~~~~   82 (200)
                      ...||++.|.+||||||+=..+. ..+........|.+..........- +..+.+||.+|++.+     .......+.+
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF-~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIF-ANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ccceEEEeccCCCCccccchhhh-hhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            35689999999999999854444 2232222233333333333333222 367999999998732     2344557889


Q ss_pred             CcEEEEEEeCCCHHHHHH---HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC------HHHHHHHHHHcCCcEEEec
Q 029029           83 AAAAIIVYDITNQASFER---AKKWVQELQAQGNPNMVMALAGNKADLLDARKVT------AEEAQAYAQENGLFFMETS  153 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~S  153 (200)
                      ++++++|||++..+-...   -+..++.+..+ .+...++....|.|+.......      .++++.+....++.++++|
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            999999999987643333   34555666655 4778899999999997533211      2223344444556778887


Q ss_pred             CCCC
Q 029029          154 AKTA  157 (200)
Q Consensus       154 a~~~  157 (200)
                      ..+.
T Consensus       161 iwDe  164 (295)
T KOG3886|consen  161 IWDE  164 (295)
T ss_pred             hhhH
Confidence            7663

>smart00053 DYNc Dynamin, GTPase

Probab=99.17  E-value=4.5e-10  Score=83.49  Aligned_cols=69  Identities=14%  Similarity=0.159  Sum_probs=42.5

Q ss_pred             EEEEEEeCCCcccc-------------ccchhhhhc-CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Q 029029           59 VKFEIWDTAGQERY-------------HSLAPMYYR-GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK  124 (200)
Q Consensus        59 ~~~~i~D~~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK  124 (200)
                      ..+.++|+||....             ..+...|++ ..+++++|+|.+..-.-....+..+.+..   .+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence            35999999996421             123444666 45689999987642221121223333333   46789999999


Q ss_pred             cCccCC
Q 029029          125 ADLLDA  130 (200)
Q Consensus       125 ~D~~~~  130 (200)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=4.6e-10  Score=94.59  Aligned_cols=123  Identities=19%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             CCCCCccceeEEEECCCCCCHHHHHHHHHhCccc-Cc---------------ccCcceeeEEEEEEEECCe-EEEEEEEe
Q 029029            3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EF---------------QESTIGAAFFSQTLAVNDA-TVKFEIWD   65 (200)
Q Consensus         3 ~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~i~D   65 (200)
                      .....++-.+|.++|+.++|||||..+|+...-. ..               ....-|.+......+..-. ++.++++|
T Consensus         3 ~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlID   82 (697)
T COG0480           3 RLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLID   82 (697)
T ss_pred             cccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeC
Confidence            3334667789999999999999999999863221 11               0111245555555555444 58999999


Q ss_pred             CCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        66 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      |||+-++.......++-.|++|+|+|....-....-.-| +...   ..++|.++++||+|...
T Consensus        83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~---~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQAD---KYGVPRILFVNKMDRLG  142 (697)
T ss_pred             CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHh---hcCCCeEEEEECccccc
Confidence            999999999999999999999999999875322222223 2222   34789999999999754

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.11  E-value=1.3e-09  Score=90.24  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=69.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE-EEEEEECCeEEEEEEEeCCCccccc-------cc---h
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF-SQTLAVNDATVKFEIWDTAGQERYH-------SL---A   76 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~   76 (200)
                      ...++|+|+|.+|+||||++|.|++...........+++.. ......  .+..+.++||||.....       ..   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i--dG~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE--CCceEEEEECCCCCccccchHHHHHHHHHH
Confidence            34679999999999999999999976543322212222222 122222  24679999999965421       11   1


Q ss_pred             hhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccC
Q 029029           77 PMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLD  129 (200)
Q Consensus        77 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~  129 (200)
                      ..++.  .+|++|+|..+.......+-..+++.+....  ..-..+||++|+.|...
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            11223  5899999987653211111112333332221  12345888999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.11  E-value=2e-09  Score=82.96  Aligned_cols=140  Identities=14%  Similarity=0.250  Sum_probs=88.4

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCc----------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---c
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---H   73 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~   73 (200)
                      ....++|+++|+.|+|||||+|.|++......          ..++.....+...+.-++....+.++||||-.+.   .
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs   99 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS   99 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence            46789999999999999999999998644322          1223334444445555677889999999993221   1


Q ss_pred             cchhh-----------h------------h--cCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029           74 SLAPM-----------Y------------Y--RGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL  127 (200)
Q Consensus        74 ~~~~~-----------~------------~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~  127 (200)
                      ..|..           |            +  ..+|+++|.+.++.- .+..+ .+.++.+...    +-+|-|+.|+|.
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~~----vNlIPVI~KaD~  174 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSKR----VNLIPVIAKADT  174 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhcc----cCeeeeeecccc
Confidence            11111           1            1  236888888887642 22222 3444555443    447888999997


Q ss_pred             cCCCCCC--HHHHHHHHHHcCCcEEE
Q 029029          128 LDARKVT--AEEAQAYAQENGLFFME  151 (200)
Q Consensus       128 ~~~~~~~--~~~~~~~~~~~~~~~~~  151 (200)
                      ....++.  .+.+++....+++++|.
T Consensus       175 lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         175 LTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            6433221  24466667778888774

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=8.1e-10  Score=90.55  Aligned_cols=120  Identities=19%  Similarity=0.287  Sum_probs=85.4

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCc---------------ceeeE--EEEEE---EECCeEEEEEEE
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST---------------IGAAF--FSQTL---AVNDATVKFEIW   64 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~---------------~~~~~--~~~~~---~~~~~~~~~~i~   64 (200)
                      .+...-.+|+++|+-+.|||+|+..|....++......               -|.+.  .+.+.   ..++..+-++++
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            44566788999999999999999999876664321111               01111  11122   225677889999


Q ss_pred             eCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        65 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ||||+-.+.......++.+|++++++|..+.-.++. ...++..   ...+.|+++|+||+|..
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVINKVDRL  262 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEehhHHH
Confidence            999999999888889999999999999988654433 2222222   23568999999999964

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.2e-09  Score=84.46  Aligned_cols=157  Identities=17%  Similarity=0.140  Sum_probs=105.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCc-ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      -|+..|+-.-|||||+..+.+...... ....-|++........+..+....|+|.||++++-..+-..+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            477889999999999999986543211 1122234443444444455568999999999987777767777899999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH---HcCCcEEEecCCCCCCHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ---ENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |.++.-. .+..+.+..+...+  -...++|+||+|..+...+ .+...+..+   ..+.++|.+|+++|.||+++.+.|
T Consensus        82 ~~deGl~-~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l  157 (447)
T COG3276          82 AADEGLM-AQTGEHLLILDLLG--IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL  157 (447)
T ss_pred             eCccCcc-hhhHHHHHHHHhcC--CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence            9965321 12223344444432  2236889999998764321 122222222   334678999999999999999999


Q ss_pred             HHhcc
Q 029029          168 AKRLP  172 (200)
Q Consensus       168 ~~~~~  172 (200)
                      .+...
T Consensus       158 ~~L~~  162 (447)
T COG3276         158 IDLLE  162 (447)
T ss_pred             HHhhh
Confidence            99885

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.08  E-value=5.7e-10  Score=84.64  Aligned_cols=55  Identities=20%  Similarity=0.186  Sum_probs=40.1

Q ss_pred             CeEEEEEeCcCccCCCCCCHHHHHHHHHH--cCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029          116 MVMALAGNKADLLDARKVTAEEAQAYAQE--NGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       116 ~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      .+-++|+||+|+........+......+.  ...+++++||++|.|++++.+||.++
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999975322233334443333  35789999999999999999999874

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=4.2e-09  Score=81.66  Aligned_cols=146  Identities=13%  Similarity=0.185  Sum_probs=88.4

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCc---------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---c
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---H   73 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~   73 (200)
                      ++...++++++|.+|.|||||||.|+...+...         ...+..+......+.-++-..+++++||||-.+.   .
T Consensus        17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns   96 (366)
T KOG2655|consen   17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS   96 (366)
T ss_pred             hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence            345679999999999999999999997644332         1112233334444444677889999999993211   1


Q ss_pred             cch----------------------hhhhc--CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           74 SLA----------------------PMYYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        74 ~~~----------------------~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ..|                      +..+.  .+|+++|.+.++.- .+..+ ...++.+.    ..+.+|-|+.|+|..
T Consensus        97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen   97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTL  171 (366)
T ss_pred             ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccC
Confidence            111                      11122  47888888887642 12222 23333333    345688889999975


Q ss_pred             CCCCC--CHHHHHHHHHHcCCcEEEecCCC
Q 029029          129 DARKV--TAEEAQAYAQENGLFFMETSAKT  156 (200)
Q Consensus       129 ~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~  156 (200)
                      ...++  -...+++....+++++|......
T Consensus       172 T~~El~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  172 TKDELNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             CHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence            43322  22345666677888877665444

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.07  E-value=4.3e-09  Score=81.54  Aligned_cols=120  Identities=20%  Similarity=0.271  Sum_probs=83.9

Q ss_pred             CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH----------HHHHHHHHHHHHHhC-CCCCeEEEEEe
Q 029029           55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS----------FERAKKWVQELQAQG-NPNMVMALAGN  123 (200)
Q Consensus        55 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i~~~~-~~~~~~ivv~n  123 (200)
                      ......+.++|++||...+.-|.+++.+++++|||+++++.+.          +.+...+++.+.... ..+.++++++|
T Consensus       191 ~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLN  270 (354)
T KOG0082|consen  191 TIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLN  270 (354)
T ss_pred             EeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEee
Confidence            3344779999999999999999999999999999999986321          122234445554443 36789999999


Q ss_pred             CcCccCCC---------------CCCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          124 KADLLDAR---------------KVTAEEAQAYAQE----------NGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       124 K~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      |.|+-++.               ....+++..+.+.          ..+-.+.+.|.+..+|+.+|..+.+.+...
T Consensus       271 K~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  271 KKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             cHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            99985421               1233344433321          123355778999999999999988877654

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.06  E-value=1.2e-09  Score=82.06  Aligned_cols=159  Identities=18%  Similarity=0.141  Sum_probs=93.6

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc----------cCcccCcceee----------------EEEEEEE------
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF----------IEFQESTIGAA----------------FFSQTLA------   53 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~----------~~~~~~~~~~~----------------~~~~~~~------   53 (200)
                      ...+...|.|.|.||+|||||+..|.....          ....++..|-.                .+.....      
T Consensus        47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG  126 (323)
T COG1703          47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG  126 (323)
T ss_pred             cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence            345567899999999999999999864211          00011111100                0000000      


Q ss_pred             ------------ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 029029           54 ------------VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA  121 (200)
Q Consensus        54 ------------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv  121 (200)
                                  .+..++.+.|++|.|-.+..   ......+|.++++.-+.-.+....+..-+.++        --++|
T Consensus       127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~v  195 (323)
T COG1703         127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIV  195 (323)
T ss_pred             hhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheee
Confidence                        11224558999998854433   33456799999988766554443333333332        23678


Q ss_pred             EeCcCccCCCCCCHHHHHHHHH---------HcCCcEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          122 GNKADLLDARKVTAEEAQAYAQ---------ENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       122 ~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      +||.|....+ ....+.....+         .+.-+++.+||.+|.|++++++.+.+.......
T Consensus       196 INKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~  258 (323)
T COG1703         196 INKADRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE  258 (323)
T ss_pred             EeccChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence            9999954321 11111111111         133479999999999999999999988776544

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=2.5e-09  Score=77.95  Aligned_cols=163  Identities=20%  Similarity=0.279  Sum_probs=99.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---chhhhhcCCcEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---LAPMYYRGAAAAI   87 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i   87 (200)
                      .+|++.|...|||||+-...... ..++..-....+.....-.+....+.+++||.||+-.+..   -....++++.++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            45999999999999997766533 2222111111111111122233567899999999865432   2345688999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEeCcCccCCCCCCHHHHHHH------------HHHcCCcEEEec
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ--GNPNMVMALAGNKADLLDARKVTAEEAQAY------------AQENGLFFMETS  153 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~------------~~~~~~~~~~~S  153 (200)
                      +|+|..+. -.+.+.++...+.+.  ..+++-+-|++.|.|...+.. ..+-.+.+            .....+.|+-+|
T Consensus       107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~-kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF-KIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh-hhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            99998764 233343333333332  247788889999999764321 11111111            112234588888


Q ss_pred             CCCCCCHHHHHHHHHHhccccCCC
Q 029029          154 AKTATNVNDIFYEIAKRLPRVQPA  177 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~~  177 (200)
                      ..+ .+|-|.|..+.+++..+.|-
T Consensus       185 IyD-HSIfEAFSkvVQkLipqLpt  207 (347)
T KOG3887|consen  185 IYD-HSIFEAFSKVVQKLIPQLPT  207 (347)
T ss_pred             ecc-hHHHHHHHHHHHHHhhhchh
Confidence            887 46899999999888877653

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2.3e-09  Score=80.25  Aligned_cols=166  Identities=16%  Similarity=0.212  Sum_probs=108.1

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcc----------cC----cccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQF----------IE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      ......++|..+|+.+-|||||-.++..--.          .+    .....-|++......-++-....+...|+||+.
T Consensus         7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence            4456789999999999999999887754111          00    011223555656666666666778999999998


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEeCcCccCCCCC---CHHHHHHHHHHcC
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM-VMALAGNKADLLDARKV---TAEEAQAYAQENG  146 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~  146 (200)
                      +|-..+..-..+.|+.|+|+...+. .+.+.++.+...+.   -+. .+++++||+|+.+++++   ...+.+.+...++
T Consensus        87 DYvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~  162 (394)
T COG0050          87 DYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG  162 (394)
T ss_pred             HHHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence            8877666667789999999999873 12222333333333   344 47788999999875432   3355777777877


Q ss_pred             C-----cEEEecCCCC--------CCHHHHHHHHHHhcccc
Q 029029          147 L-----FFMETSAKTA--------TNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       147 ~-----~~~~~Sa~~~--------~~i~~~~~~l~~~~~~~  174 (200)
                      +     |++.-||..-        ..|.++++.+.+.+...
T Consensus       163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P  203 (394)
T COG0050         163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP  203 (394)
T ss_pred             CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence            6     4666665432        23566666666555443

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.01  E-value=2.8e-10  Score=84.20  Aligned_cols=154  Identities=18%  Similarity=0.155  Sum_probs=85.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccC----------cccCcce----------------eeEEEEEEEEC------
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQESTIG----------------AAFFSQTLAVN------   55 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~~~~~~----------------~~~~~~~~~~~------   55 (200)
                      .+...|.|.|+||+|||||++.|.......          ..+|..|                ...+....--.      
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            457899999999999999999987411100          0011111                01111111101      


Q ss_pred             ------------CeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEe
Q 029029           56 ------------DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN  123 (200)
Q Consensus        56 ------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~n  123 (200)
                                  ..++.+.|++|.|-.+.+   .....-+|.+++|.-+.-.+....+..-+.++        .-++|+|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN  175 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence                        113558888998743322   33456799999999887654443333333333        2368899


Q ss_pred             CcCccCCCCCCHHHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          124 KADLLDARKVTAEEAQAYAQE-------NGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       124 K~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      |.|..... ....+.+.....       +..+++.+||.++.|++++++.|.+....
T Consensus       176 KaD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  176 KADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             --SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            99954321 112222222221       23479999999999999999998876543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.6e-09  Score=83.42  Aligned_cols=117  Identities=15%  Similarity=0.278  Sum_probs=78.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcc-cCcceeeEEEEEEEECCe------E-------------------------
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDA------T-------------------------   58 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~-------------------------   58 (200)
                      -=|+++|.-+.||||+|+.|+...++... .+.++++++.....-+..      .                         
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            35899999999999999999988886532 334444444443322111      0                         


Q ss_pred             --------EEEEEEeCCCcc-----------ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE
Q 029029           59 --------VKFEIWDTAGQE-----------RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA  119 (200)
Q Consensus        59 --------~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i  119 (200)
                              -.+.++||||.-           .+....+-+...+|.++++||....+--++..+.+..++.+.   -.+-
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E---dkiR  215 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE---DKIR  215 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc---ceeE
Confidence                    119999999932           123334446789999999999876554455555666666552   2367


Q ss_pred             EEEeCcCccCC
Q 029029          120 LAGNKADLLDA  130 (200)
Q Consensus       120 vv~nK~D~~~~  130 (200)
                      ||+||+|..+.
T Consensus       216 VVLNKADqVdt  226 (532)
T KOG1954|consen  216 VVLNKADQVDT  226 (532)
T ss_pred             EEeccccccCH
Confidence            78999997654

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=1.7e-08  Score=73.61  Aligned_cols=156  Identities=13%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCccc------Cc-ceeeEEEE--EEEECCeEEEEEEEeCCCccc---cc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE------ST-IGAAFFSQ--TLAVNDATVKFEIWDTAGQER---YH   73 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~------~~-~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~---~~   73 (200)
                      +....++|.|||.+|.|||||+|.|..........      +. ..+.....  .+...+-..+++++||||..+   ..
T Consensus        42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~  121 (336)
T KOG1547|consen   42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND  121 (336)
T ss_pred             hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence            44668999999999999999999998644422111      11 11222223  333356677899999999321   11


Q ss_pred             cchhh-----------------------hhc--CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029           74 SLAPM-----------------------YYR--GAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL  127 (200)
Q Consensus        74 ~~~~~-----------------------~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~  127 (200)
                      ..|..                       .+.  .+++++|.+..+.- ++..+ .++++++.+.    .-++-|+.|+|-
T Consensus       122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDt  196 (336)
T KOG1547|consen  122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADT  196 (336)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeeccc
Confidence            22221                       122  35677777776642 33333 3555555553    336778899995


Q ss_pred             cCCC--CCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029          128 LDAR--KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus       128 ~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      ...+  ..-.+.+++....+++.+++-.+.+...-+..++.
T Consensus       197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~  237 (336)
T KOG1547|consen  197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND  237 (336)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence            4321  11223455566778888887776665544444443

>cd01855 YqeH YqeH

Probab=98.94  E-value=5.3e-09  Score=75.64  Aligned_cols=94  Identities=23%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcC
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENG  146 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  146 (200)
                      +...+..++..+|++++|+|.+++..     .|...+... ..++|+++|+||+|+.... ...+....+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence            46677778899999999999987531     122222222 2468999999999986532 2233333333     2233


Q ss_pred             C---cEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          147 L---FFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       147 ~---~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      .   .++.+||+++.|+++++++|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   5899999999999999999998764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.94  E-value=2.7e-09  Score=73.46  Aligned_cols=54  Identities=26%  Similarity=0.293  Sum_probs=41.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      +++++|.+|+|||||+|+|++.... ......|.+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999976543 3444555555555555544   5899999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.93  E-value=3.9e-09  Score=73.98  Aligned_cols=57  Identities=16%  Similarity=0.179  Sum_probs=41.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ..++|+++|.+|+|||||+|+|.+.. .....+..|++.....+..+.   .+.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence            46789999999999999999999543 334456666665555444432   3789999993

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.92  E-value=5.4e-09  Score=82.07  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEE
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFME  151 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  151 (200)
                      ..+....+.++|.+++|+|+.++. ....+.+|+.....   .++|+++|+||+|+.....  ..........++++++.
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence            344455688999999999998765 34455677765532   5789999999999864322  12223334567889999


Q ss_pred             ecCCCCCCHHHHHHHHHHhc
Q 029029          152 TSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      +||.++.|++++++.+...+
T Consensus       155 iSA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        155 ISVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             EEcCCCCCHHHHhhhhccce
Confidence            99999999999999987654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.92  E-value=3.9e-09  Score=74.92  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=43.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ...++++++|.+|+|||||+|+|.+... ...++..|++.....+..+   ..+.++||||.
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi  172 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLD---KKVKLLDSPGI  172 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence            3458999999999999999999996443 3445666777665555543   25899999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01859 MJ1464 MJ1464

Probab=98.90  E-value=3.8e-09  Score=73.94  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEe
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMET  152 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
                      +.+.+....++|++++|+|.+++..... ..+...+.   ..++|+++|+||+|+.+...  ......+....+.+++.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i   76 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYV   76 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEE
Confidence            3456677888999999999987543221 12222222   23689999999999853211  111223334456789999


Q ss_pred             cCCCCCCHHHHHHHHHHhcc
Q 029029          153 SAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      ||+++.|++++++.+.+.+.
T Consensus        77 Sa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          77 SAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EccccccHHHHHHHHHHHHh
Confidence            99999999999999988765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.90  E-value=6.8e-09  Score=79.74  Aligned_cols=89  Identities=18%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             hhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCC
Q 029029           77 PMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK  155 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (200)
                      +..+.++|.+++|+|..++. ++..+.+|+..+..   .++|+++|+||+|+.+..  ............+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            34588999999999999887 77788888876654   368899999999986531  1122233344578899999999


Q ss_pred             CCCCHHHHHHHHHHh
Q 029029          156 TATNVNDIFYEIAKR  170 (200)
Q Consensus       156 ~~~~i~~~~~~l~~~  170 (200)
                      ++.|+++++.+|...
T Consensus       148 ~g~gi~~L~~~L~~k  162 (287)
T cd01854         148 TGEGLDELREYLKGK  162 (287)
T ss_pred             CCccHHHHHhhhccc
Confidence            999999999887753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.88  E-value=1.2e-08  Score=80.10  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC-CHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV-TAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                      ..++|.+++|++.....++..+..|+.....   .++|.++|+||+|+...... ............+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            5779999999999877788888999875543   46889999999999653211 1122333345678899999999999


Q ss_pred             CHHHHHHHHHHhcc
Q 029029          159 NVNDIFYEIAKRLP  172 (200)
Q Consensus       159 ~i~~~~~~l~~~~~  172 (200)
                      |+++++++|...+.
T Consensus       195 GideL~~~L~~ki~  208 (347)
T PRK12288        195 GLEELEAALTGRIS  208 (347)
T ss_pred             CHHHHHHHHhhCCE
Confidence            99999999987553

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=6e-08  Score=75.33  Aligned_cols=84  Identities=20%  Similarity=0.168  Sum_probs=51.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCc------ceeeEEEEE--------EE--ECCeEEEEEEEeCCCcc---
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST------IGAAFFSQT--------LA--VNDATVKFEIWDTAGQE---   70 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~------~~~~~~~~~--------~~--~~~~~~~~~i~D~~G~~---   70 (200)
                      .+++.|||.|++|||||.|+++.........|.      .|+.+.+..        ..  -.-....+.|+|++|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999976543222222      222111110        00  01124569999999842   


Q ss_pred             -ccccchhh---hhcCCcEEEEEEeCC
Q 029029           71 -RYHSLAPM---YYRGAAAAIIVYDIT   93 (200)
Q Consensus        71 -~~~~~~~~---~~~~~d~~i~v~d~~   93 (200)
                       .-+.+-..   -++.+|+++.|+|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence             22223333   357899999999865

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=2.5e-09  Score=80.47  Aligned_cols=188  Identities=14%  Similarity=0.148  Sum_probs=117.4

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc---cCcccCcce--eeEEEEEE---------------------------E
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQESTIG--AAFFSQTL---------------------------A   53 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~---~~~~~~~~~--~~~~~~~~---------------------------~   53 (200)
                      +++..++|.-+|+.--||||++.++.+-..   ..+....+.  ..|....+                           .
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            457789999999999999999998875221   111111100  00000000                           0


Q ss_pred             ECCe------EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029           54 VNDA------TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL  127 (200)
Q Consensus        54 ~~~~------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~  127 (200)
                      ..+.      -..+.|.|+||++.+...+-.-..-.|++++.+..++.-...+..+.+..+...  .-+.++++-||+|+
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDl  191 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDL  191 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhh
Confidence            0000      123889999999876554443344457777777766532222333333333332  22458899999999


Q ss_pred             cCCCCC--CHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhccccCCCCCCCCceeccCCCCCCCC
Q 029029          128 LDARKV--TAEEAQAYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTAS  195 (200)
Q Consensus       128 ~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (200)
                      ..+++.  ..+.+.++.+.   .+.|++++||.-..|++-+.+++.+++.....+.....-.+..|+.+-+++
T Consensus       192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkP  264 (466)
T KOG0466|consen  192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKP  264 (466)
T ss_pred             hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCC
Confidence            765432  23445566554   456899999999999999999999999998877776655556676665554

>PRK00098 GTPase RsgA; Reviewed

Probab=98.85  E-value=1.1e-08  Score=79.07  Aligned_cols=89  Identities=20%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             hhcCCcEEEEEEeCCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA  157 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (200)
                      .+.++|++++|+|..++..... +.+|+..+..   .++|+++|+||+|+.+... .........+..+.+++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4589999999999988765444 4677766543   4689999999999863221 122334445567889999999999


Q ss_pred             CCHHHHHHHHHHhc
Q 029029          158 TNVNDIFYEIAKRL  171 (200)
Q Consensus       158 ~~i~~~~~~l~~~~  171 (200)
                      .|++++++.+..++
T Consensus       153 ~gi~~L~~~l~gk~  166 (298)
T PRK00098        153 EGLDELKPLLAGKV  166 (298)
T ss_pred             ccHHHHHhhccCce
Confidence            99999998875443

>cd01855 YqeH YqeH

Probab=98.83  E-value=9e-09  Score=74.42  Aligned_cols=57  Identities=18%  Similarity=0.270  Sum_probs=42.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCccc-------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ..+++++|.+|+|||||+|+|++....       ...+...|++.....+.+..   .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence            468999999999999999999975431       13345556777666666643   5899999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.81  E-value=1.2e-08  Score=79.49  Aligned_cols=60  Identities=20%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      .....+++|+|.|++|||||||+|.+... ...++.+|+|.....+.....   +.++||||.-
T Consensus       129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         129 LKRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             CccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            45568899999999999999999995544 556777788887777777553   9999999953

>cd01859 MJ1464 MJ1464

Probab=98.79  E-value=2.4e-08  Score=69.86  Aligned_cols=57  Identities=21%  Similarity=0.233  Sum_probs=41.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG   68 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   68 (200)
                      ....+++++|.+++|||||+++|.+.. .....++.|++........++   .+.+|||||
T Consensus        99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859          99 GKEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            356789999999999999999998543 444556666554433333322   699999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.78  E-value=2.4e-08  Score=71.00  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=42.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ..++++++|.+|+|||||+++|.+.... ......+++........+   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4579999999999999999999965543 344555566655555553   45899999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.75  E-value=3.2e-08  Score=75.65  Aligned_cols=58  Identities=24%  Similarity=0.296  Sum_probs=43.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ...++++++|.+|+|||||+|+|.+.... ......|++.....+....   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVA-KVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            45689999999999999999999965432 3345566666555555533   5799999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.75  E-value=4.3e-08  Score=75.39  Aligned_cols=59  Identities=20%  Similarity=0.266  Sum_probs=44.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      ...++++|+|.+|+|||||+|+|.+... ....+..|++.....+..+.   .+.++||||.-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            3568999999999999999999996543 23455667776665555543   58899999963

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=6.9e-08  Score=74.75  Aligned_cols=157  Identities=18%  Similarity=0.210  Sum_probs=97.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCccc-----------------------CcceeeEEEEEEEEC-------
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-----------------------STIGAAFFSQTLAVN-------   55 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~-------   55 (200)
                      +...+++++++|.-.+|||||+-.|..+....-..                       ...|.+...+..++.       
T Consensus       163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE  242 (591)
T KOG1143|consen  163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE  242 (591)
T ss_pred             ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence            34568999999999999999998887655431110                       011111111111111       


Q ss_pred             ---CeEEEEEEEeCCCccccccchhhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           56 ---DATVKFEIWDTAGQERYHSLAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        56 ---~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                         ...--++|+|.+|+.+|.......+.  ..|...+++.....-.+. .++.+-.+...   ++|++++++|+|+...
T Consensus       243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~  318 (591)
T KOG1143|consen  243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDR  318 (591)
T ss_pred             HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccc
Confidence               11223999999999988766655443  478888888877543332 23444455444   7899999999999764


Q ss_pred             CC------------------------CCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHH
Q 029029          131 RK------------------------VTAEEAQAYAQE----NGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus       131 ~~------------------------~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      .-                        ...+++...++.    .-+|+|.+|..+|+|++.+...
T Consensus       319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence            11                        122233333333    2247999999999999865443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.70  E-value=8.2e-08  Score=76.08  Aligned_cols=95  Identities=25%  Similarity=0.293  Sum_probs=68.4

Q ss_pred             ccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH----HHHHH
Q 029029           69 QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ----AYAQE  144 (200)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~----~~~~~  144 (200)
                      .+.+......+...++++++|+|+.+..     ..|...+.... .+.|+++|+||+|+... ....+.+.    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            4567777777888999999999987643     12334443332 35789999999999653 23333443    34556


Q ss_pred             cCC---cEEEecCCCCCCHHHHHHHHHHh
Q 029029          145 NGL---FFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       145 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      .++   .++.+||+++.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.69  E-value=5.4e-08  Score=68.06  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=40.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ....+++++|.+|+|||||+|.|++.... ......+++.........   ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKL-KVGNVPGTTTSQQEVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccc-cccCCCCcccceEEEEec---CCEEEEECCCC
Confidence            45688999999999999999999964422 233333444444444443   35899999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.68  E-value=5.8e-08  Score=72.28  Aligned_cols=155  Identities=17%  Similarity=0.146  Sum_probs=90.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccC-cceeeEEEEEEEECCeEEEEEEEeCCCc----------cccccch
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQ----------ERYHSLA   76 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   76 (200)
                      ..+.++++.|.+++|||+||+.+........... ..|.+.......+   +-.+.+.|.||.          ..+..+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhH
Confidence            4578999999999999999999986554433333 5555554455544   346889999992          1233344


Q ss_pred             hhhhcCCc---EEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC----CCHHHHHHHHH-----
Q 029029           77 PMYYRGAA---AAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK----VTAEEAQAYAQ-----  143 (200)
Q Consensus        77 ~~~~~~~d---~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~-----  143 (200)
                      ..|+..-+   -+.+.+|.+.+ ..-+.  ..++.   .+..++|+.+|.||+|......    -+...+.....     
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~---~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAW---LGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHH---HhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            44443322   22334454432 11111  11222   2336899999999999743211    01111111111     


Q ss_pred             --HcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029          144 --ENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       144 --~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                        .-..+.+.+|+.++.|++++...+.+.
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhhh
Confidence              122356679999999999988776653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.68  E-value=1.3e-06  Score=60.15  Aligned_cols=147  Identities=22%  Similarity=0.295  Sum_probs=80.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCC-Cccc--------------c-
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA-GQER--------------Y-   72 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~--------------~-   72 (200)
                      -.+||.+.|+||+||||++.++.. .....--...  .+....+...+.-..|.+.|+. |...              | 
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e-~L~~~g~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAE-KLREKGYKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHH-HHHhcCceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            468999999999999999998873 2221111112  2444555566777778888876 3211              0 


Q ss_pred             ------c----cchhhhhcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH
Q 029029           73 ------H----SLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY  141 (200)
Q Consensus        73 ------~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  141 (200)
                            .    ...+..+..||++|+  |=-.+  ++.. ..+.+.+...-..++|++..+.+.+. +    +  .++++
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr-~----P--~v~~i  149 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR-H----P--LVQRI  149 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC-C----h--HHHHh
Confidence                  0    011122345666554  43333  3332 34444444444467888777776653 1    1  12333


Q ss_pred             HHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       142 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      -...++.+|    .+..|-+.+++.+...+..
T Consensus       150 k~~~~v~v~----lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         150 KKLGGVYVF----LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             hhcCCEEEE----EccchhhHHHHHHHHHhcc
Confidence            333333333    5556666888888776643

>cd01858 NGP_1 NGP-1

Probab=98.67  E-value=7.7e-08  Score=67.39  Aligned_cols=91  Identities=15%  Similarity=0.144  Sum_probs=57.6

Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                      .+..+|++++|+|.+++... ......+.+... ..++|+++|+||+|+...... ......+.+.+....+.+||+++.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence            45789999999999986321 112222223222 345899999999998643211 111222222222335789999999


Q ss_pred             CHHHHHHHHHHhcc
Q 029029          159 NVNDIFYEIAKRLP  172 (200)
Q Consensus       159 ~i~~~~~~l~~~~~  172 (200)
                      |++++++.+.+.+.
T Consensus        82 ~~~~L~~~l~~~~~   95 (157)
T cd01858          82 GKGSLIQLLRQFSK   95 (157)
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999987643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.64  E-value=5.1e-07  Score=70.28  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=96.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCc--------------ceeeEEEEEEEECC----------------
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--------------IGAAFFSQTLAVND----------------   56 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----------------   56 (200)
                      ....+.|++.|+.+.|||||.-.|..+....-...+              ...+.....+.+++                
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            456889999999999999998888765553211110              00111111111111                


Q ss_pred             -----eEEEEEEEeCCCccccccch-h-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           57 -----ATVKFEIWDTAGQERYHSLA-P-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        57 -----~~~~~~i~D~~G~~~~~~~~-~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                           .+.-+.|.||.|++.+-... . .+-...|..++++..++.-+ ....+.+-....   -..|+++++||+|+..
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-~~tkEHLgi~~a---~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-KMTKEHLGIALA---MELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-hhhhHhhhhhhh---hcCCEEEEEEecccCc
Confidence                 12348999999998764332 2 23457899999998887522 122333333333   3689999999999975


Q ss_pred             CCCCC--HHHHHHHH----------------------HH-c--CCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          130 ARKVT--AEEAQAYA----------------------QE-N--GLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       130 ~~~~~--~~~~~~~~----------------------~~-~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      +....  .+++....                      -+ .  -+|+|.+|+.+|+|++-+.+. ...+...
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~-f~~Lp~r  340 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF-FLLLPKR  340 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH-HHhCCcc
Confidence            42111  11111111                      11 1  248999999999999865554 4445554

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=4.2e-07  Score=69.66  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=98.3

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHh---Cc-------ccC----cccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVK---GQ-------FIE----FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~---~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      ....+.++|.-+|+..-|||||-.+++.   ..       +.+    .....-|.+.....+.++.....+-=.|+||+.
T Consensus        49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA  128 (449)
T KOG0460|consen   49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA  128 (449)
T ss_pred             ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence            3456789999999999999999777653   11       110    011223555555666666566667778999998


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC---CCHHHHHHHHHHcCC
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK---VTAEEAQAYAQENGL  147 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~  147 (200)
                      +|-..+..-..+.|+.|+|+..+|. .+.+.++.+..-+...-  ..+++++||.|+.++.+   +..-+++++...++.
T Consensus       129 DYIKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460|consen  129 DYIKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             HHHHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence            8776666666788999999999984 23444444444444322  34888899999985432   234557777777664


Q ss_pred             -----cEEEec---CCCC
Q 029029          148 -----FFMETS---AKTA  157 (200)
Q Consensus       148 -----~~~~~S---a~~~  157 (200)
                           |++.=|   |.+|
T Consensus       206 ~Gd~~PvI~GSAL~ALeg  223 (449)
T KOG0460|consen  206 DGDNTPVIRGSALCALEG  223 (449)
T ss_pred             CCCCCCeeecchhhhhcC
Confidence                 677544   4555

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2.6e-06  Score=70.66  Aligned_cols=144  Identities=17%  Similarity=0.185  Sum_probs=79.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCc-ccCcce-------eeE---------------------------------
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIG-------AAF---------------------------------   47 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-~~~~~~-------~~~---------------------------------   47 (200)
                      ...||+|.|..++||||++|+++....-+. ..+++.       .+-                                 
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            468999999999999999999987544221 111110       000                                 


Q ss_pred             --EEEEEEECCe-----EEEEEEEeCCCcc---ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe
Q 029029           48 --FSQTLAVNDA-----TVKFEIWDTAGQE---RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV  117 (200)
Q Consensus        48 --~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  117 (200)
                        ....+..+..     .-.+.++|.||.+   ........+...+|++|+|.+..+..+..+ ..++.....   ...-
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCCc
Confidence              0000011111     0138889999954   344445556789999999999877533322 222333322   2333


Q ss_pred             EEEEEeCcCccCCCCCCHHHHHHHHHHcCC--------cEEEecCCC
Q 029029          118 MALAGNKADLLDARKVTAEEAQAYAQENGL--------FFMETSAKT  156 (200)
Q Consensus       118 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~  156 (200)
                      ++++.||-|.....+.-.+++.+-...+.+        .+|.+||+.
T Consensus       264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            666677779754432222333333223322        477888765

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=1.2e-06  Score=71.40  Aligned_cols=139  Identities=15%  Similarity=0.147  Sum_probs=82.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      .++++=++|+||+|+||||||+.|.............|    +. ..+.+....++|+++|..  .. .+....+-+|++
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D--l~-~miDvaKIaDLV  137 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD--LH-QMIDVAKIADLV  137 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH--HH-HHHhHHHhhhee
Confidence            35678888999999999999999874322211111111    11 223577788999999943  22 223456789999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH-----HHHHHHH-cCCcEEEecCCC
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE-----AQAYAQE-NGLFFMETSAKT  156 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~-----~~~~~~~-~~~~~~~~Sa~~  156 (200)
                      ++.+|.+-...++ ..+++..+..++.+  .++-|+|+.|+.......-..     .+.|... .|+++|.+|-..
T Consensus       138 lLlIdgnfGfEME-TmEFLnil~~HGmP--rvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         138 LLLIDGNFGFEME-TMEFLNILISHGMP--RVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EEEeccccCceeh-HHHHHHHHhhcCCC--ceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            9999987542222 23445555555333  366789999986432111111     1122222 256788887554

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.54  E-value=3.7e-07  Score=63.82  Aligned_cols=84  Identities=13%  Similarity=0.058  Sum_probs=55.0

Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029           84 AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI  163 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (200)
                      |++++|+|..++.+...  .++.. ......++|+++|+||+|+.....+ ......+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988754332  23331 1222356899999999998543211 11112232334556889999999999999


Q ss_pred             HHHHHHhc
Q 029029          164 FYEIAKRL  171 (200)
Q Consensus       164 ~~~l~~~~  171 (200)
                      ++.+.+..
T Consensus        77 ~~~i~~~~   84 (155)
T cd01849          77 ESAFTKQT   84 (155)
T ss_pred             HHHHHHHh
Confidence            99987653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.54  E-value=8.1e-07  Score=65.87  Aligned_cols=86  Identities=19%  Similarity=0.094  Sum_probs=51.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhC--cccCc---ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc------ch
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LA   76 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~   76 (200)
                      .+-.-|+|+|++++|||+|+|.|++.  .+.-.   ...+.|+-....... .+....+.++||+|......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhhH
Confidence            34566899999999999999999976  33211   111222111111111 12457899999999654322      11


Q ss_pred             hhhhc--CCcEEEEEEeCCC
Q 029029           77 PMYYR--GAAAAIIVYDITN   94 (200)
Q Consensus        77 ~~~~~--~~d~~i~v~d~~~   94 (200)
                      ...+.  -++++||..+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          84 LFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcc
Confidence            22233  3888888877764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.52  E-value=5.5e-07  Score=69.96  Aligned_cols=162  Identities=18%  Similarity=0.187  Sum_probs=90.3

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCc------------------ccCcceee-----EEEEEEE---------
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF------------------QESTIGAA-----FFSQTLA---------   53 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~-----~~~~~~~---------   53 (200)
                      +.-.+++|+++|+..+|||||+-.|..+....-                  ..+..|.+     ...+...         
T Consensus       129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L  208 (641)
T KOG0463|consen  129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL  208 (641)
T ss_pred             ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence            334589999999999999999988876544211                  11111111     1111111         


Q ss_pred             -----ECCeEEEEEEEeCCCccccccchhhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           54 -----VNDATVKFEIWDTAGQERYHSLAPMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        54 -----~~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                           .+...--++|+|.+|++.|-.....-  -...|.-++++-.+..- .-...+.+..-..   -.+|+++|++|+|
T Consensus       209 dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa---L~VPVfvVVTKID  284 (641)
T KOG0463|consen  209 DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA---LHVPVFVVVTKID  284 (641)
T ss_pred             cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh---hcCcEEEEEEeec
Confidence                 11222348999999999876544332  23467777777665421 0111122222122   3678999999999


Q ss_pred             ccCCCCCC--HHHHHHHHH--------------------------HcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          127 LLDARKVT--AEEAQAYAQ--------------------------ENGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       127 ~~~~~~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      +...+.+.  ...+.++.+                          +.-||+|.+|-.+|.|+..+... ++.+.
T Consensus       285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF-LNlls  357 (641)
T KOG0463|consen  285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF-LNLLS  357 (641)
T ss_pred             cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH-HhhcC
Confidence            85432111  111222221                          12257999999999999865543 44443

>PRK12288 GTPase RsgA; Reviewed

Probab=98.49  E-value=3e-07  Score=72.30  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=36.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccC--cccCcc----eeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTI----GAAFFSQTLAVNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   73 (200)
                      .++|+|.+|+|||||||+|++.....  ..+...    .++....-+.+++.   ..++||||...+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            47999999999999999999643321  111111    13333344444332   3589999986654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.49  E-value=1.5e-06  Score=67.57  Aligned_cols=143  Identities=15%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcc---------------------cCcceeeEEEEEEE-------------E
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ---------------------ESTIGAAFFSQTLA-------------V   54 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~   54 (200)
                      +.--|+++|++|+||||++..|.+.......                     ....+..+......             .
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999988652111000                     00011111111000             0


Q ss_pred             CCeEEEEEEEeCCCccccccc----hhhh--------hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Q 029029           55 NDATVKFEIWDTAGQERYHSL----APMY--------YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAG  122 (200)
Q Consensus        55 ~~~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~  122 (200)
                      ....+.+.++||||.......    ...+        -...+..++|+|.+..  .+.+.. ...+...   -.+.-+|+
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~---~~~~giIl  266 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA---VGLTGIIL  266 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh---CCCCEEEE
Confidence            123467999999996432111    1111        1246788999999853  222221 1222211   12346789


Q ss_pred             eCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029          123 NKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI  163 (200)
Q Consensus       123 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (200)
                      ||.|....    .-.+...+...++|+..++  +|.+++++
T Consensus       267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            99995322    3335566677799988887  66767654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.48  E-value=3e-07  Score=72.36  Aligned_cols=56  Identities=23%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcce-------eeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG-------AAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      .++|+|++|+|||||||.|++.... ......+       ++.....+..++.   ..++||||...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~-~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~  236 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVEL-RVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ  236 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcccc-ccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence            4799999999999999999954321 1222222       3444444444332   26899999754

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.46  E-value=2.1e-07  Score=64.89  Aligned_cols=60  Identities=25%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccC--cccCc----ceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIE--FQEST----IGAAFFSQTLAVNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   73 (200)
                      -.++++|++|+|||||+|.|++.....  ..+..    -.++.....+..+.   ...++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCccc
Confidence            578999999999999999999653211  11111    11222233333333   25788999976543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01856 YlqF YlqF

Probab=98.46  E-value=4.6e-07  Score=64.39  Aligned_cols=89  Identities=22%  Similarity=0.144  Sum_probs=59.2

Q ss_pred             chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029           75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                      .....+.++|++++|+|.+++..... ..++..+     .++|.++|+||+|+.+...  .....++.+..+..++.+||
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~iSa   83 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFVNA   83 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEEEC
Confidence            33456789999999999987643211 1112211     3468999999999853311  11122222334456889999


Q ss_pred             CCCCCHHHHHHHHHHhc
Q 029029          155 KTATNVNDIFYEIAKRL  171 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~~  171 (200)
                      +++.|++++.+.+...+
T Consensus        84 ~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          84 KSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             CCcccHHHHHHHHHHHH
Confidence            99999999999998875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.45  E-value=1.8e-05  Score=62.88  Aligned_cols=159  Identities=16%  Similarity=0.261  Sum_probs=96.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeE----------EEEEEEE-CCeEEEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAF----------FSQTLAV-NDATVKFE   62 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~----------~~~~~~~-~~~~~~~~   62 (200)
                      ...+=|.||||..+||||||.+|-.....              +..++..|.+.          ....+.+ ++..+++.
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            45678999999999999999998652221              11122222221          2233444 46788999


Q ss_pred             EEeCCCcc-------------c------cccc----------hhhhhc--CCcEEEEEEeCC----CHHHHHHH-HHHHH
Q 029029           63 IWDTAGQE-------------R------YHSL----------APMYYR--GAAAAIIVYDIT----NQASFERA-KKWVQ  106 (200)
Q Consensus        63 i~D~~G~~-------------~------~~~~----------~~~~~~--~~d~~i~v~d~~----~~~s~~~~-~~~~~  106 (200)
                      ++|+.|.-             +      +..-          ++..+.  ..-++++.-|-+    .++.+... .+.+.
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            99999821             0      0000          000111  233667776655    24455444 34555


Q ss_pred             HHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC--CCCHHHHHHHHHHhc
Q 029029          107 ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT--ATNVNDIFYEIAKRL  171 (200)
Q Consensus       107 ~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~~  171 (200)
                      +++..   ++|+++++|-.+-..  .-..+...++..+++++++++++..  ...|..+++.++-..
T Consensus       175 ELk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF  236 (492)
T PF09547_consen  175 ELKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF  236 (492)
T ss_pred             HHHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence            66554   789999999998432  2345567778888999999887654  446666666555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR00092 GTP-binding protein YchF

Probab=98.44  E-value=1.1e-06  Score=69.05  Aligned_cols=83  Identities=14%  Similarity=-0.054  Sum_probs=52.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECC---------------eEEEEEEEeCCCccc---
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVND---------------ATVKFEIWDTAGQER---   71 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~---   71 (200)
                      +++.|+|.|++|||||.+.|++... .....|..+.........+++               ....+.+.|.||.-.   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999997654 222212221111122222222               124689999999532   


Q ss_pred             ----cccchhhhhcCCcEEEEEEeCC
Q 029029           72 ----YHSLAPMYYRGAAAAIIVYDIT   93 (200)
Q Consensus        72 ----~~~~~~~~~~~~d~~i~v~d~~   93 (200)
                          .....-..++.+|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                1112223567899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.43  E-value=6.9e-06  Score=66.89  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             EEEEEeCCCc-------------cccccchhhhhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCc
Q 029029           60 KFEIWDTAGQ-------------ERYHSLAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKA  125 (200)
Q Consensus        60 ~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~  125 (200)
                      ...+.|.||-             +....+.+++..+.+++|+|+--..-+. -..+..+...+.   -.+...|+|+||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~D---P~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD---PHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcC---CCCCeeEEEEeec
Confidence            4788899993             2234456678899999999986543221 112223222222   2466789999999


Q ss_pred             CccCCCCCCHHHHHHHHHHcCC-----cEEEecCCCC
Q 029029          126 DLLDARKVTAEEAQAYAQENGL-----FFMETSAKTA  157 (200)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~  157 (200)
                      |+.+.+..+++.++++....-.     .||.+..-.|
T Consensus       490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG  526 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG  526 (980)
T ss_pred             chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence            9999888899988888765333     3776654443

>PRK13796 GTPase YqeH; Provisional

Probab=98.42  E-value=5e-07  Score=71.75  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcc----cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQF----IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      ..++.|+|.+|+|||||||+|+....    ....++..|+|.....+.+++.   ..++||||..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            35799999999999999999985321    1123455666766666655432   4799999964

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.41  E-value=7.4e-07  Score=70.68  Aligned_cols=58  Identities=21%  Similarity=0.323  Sum_probs=41.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcc----cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQF----IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      .+++++|.+|+|||||+|+|++...    ....+...|++.....+..+.   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            5899999999999999999996432    123445566666555555422   367999999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.41  E-value=9.3e-07  Score=60.77  Aligned_cols=75  Identities=23%  Similarity=0.301  Sum_probs=51.0

Q ss_pred             hhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCC
Q 029029           78 MYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK  155 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (200)
                      ..+..+|++++|+|..++.+..  .+.+++...    ..++|+++++||+|+.+...  ........+..+..++.+||.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            4568899999999998875432  333443322    24689999999999854321  223445555667789999998


Q ss_pred             CCC
Q 029029          156 TAT  158 (200)
Q Consensus       156 ~~~  158 (200)
                      ++.
T Consensus        81 ~~~   83 (141)
T cd01857          81 KEN   83 (141)
T ss_pred             CCC
Confidence            764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=6.5e-06  Score=60.78  Aligned_cols=157  Identities=18%  Similarity=0.273  Sum_probs=96.5

Q ss_pred             ceeEEEECCCCC--CHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeE--EEEEEEeCCCccccccchhhhhcCCcE
Q 029029           10 NAKLVLLGDVGA--GKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT--VKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus        10 ~~~i~vvG~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +..++|+|-+|+  ||.+|+++|....+.....+...+.++.+++.-....  +.+.+.-.-  +.+............+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceee
Confidence            346899999998  9999999998776655444444455666655433222  223332221  1111111112234568


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC---------------------------------
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK---------------------------------  132 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~---------------------------------  132 (200)
                      ++++||.+....+..++.|+........  -.++.++||.|.....-                                 
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            8999999999889999999876544321  23566799998643100                                 


Q ss_pred             --------C---CHHHHHHHHHHcCCcEEEecCCC------------CCCHHHHHHHHHHh
Q 029029          133 --------V---TAEEAQAYAQENGLFFMETSAKT------------ATNVNDIFYEIAKR  170 (200)
Q Consensus       133 --------~---~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~l~~~  170 (200)
                              .   .-.....++..+++.+++.++..            ..|++.+|..|-..
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah  220 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH  220 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence                    0   00114566777888899888743            24788888877543

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.41  E-value=6.3e-07  Score=68.62  Aligned_cols=90  Identities=18%  Similarity=0.118  Sum_probs=56.8

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC---------------CeEEEEEEEeCCC
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN---------------DATVKFEIWDTAG   68 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~G   68 (200)
                      ++.....+++.|||.|++|||||.|.|+.........|..+.+-......+.               -....++++|++|
T Consensus        14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG   93 (391)
T KOG1491|consen   14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG   93 (391)
T ss_pred             ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence            3455678899999999999999999999766654444443322222111111               1245699999998


Q ss_pred             ccc----cccchhh---hhcCCcEEEEEEeCC
Q 029029           69 QER----YHSLAPM---YYRGAAAAIIVYDIT   93 (200)
Q Consensus        69 ~~~----~~~~~~~---~~~~~d~~i~v~d~~   93 (200)
                      .-.    -..+...   .++.+|+++-|++..
T Consensus        94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence            421    2222233   356788888887753

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.39  E-value=2.9e-06  Score=64.70  Aligned_cols=95  Identities=16%  Similarity=0.112  Sum_probs=56.0

Q ss_pred             eEEEEEEEeCCCccccccch----hh---h-----hcCCcEEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEe
Q 029029           57 ATVKFEIWDTAGQERYHSLA----PM---Y-----YRGAAAAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGN  123 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~n  123 (200)
                      .++.+.++||||........    ..   .     -..+|..++|+|.+.. +.+...    ..+....   .+.-+|+|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEE
Confidence            34679999999965322111    11   1     1248999999999753 223222    2222211   13567899


Q ss_pred             CcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029          124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus       124 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      |.|....    .-.+.......++|+..++  +|.+++++.
T Consensus       226 KlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       226 KLDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             ccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            9996432    3335555667788888777  666666543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.39  E-value=8.8e-07  Score=67.79  Aligned_cols=100  Identities=22%  Similarity=0.197  Sum_probs=64.7

Q ss_pred             CCcc-ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc
Q 029029           67 AGQE-RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN  145 (200)
Q Consensus        67 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~  145 (200)
                      ||+. .........+..+|++++|+|...+.+...  .++....    .++|+++|+||+|+.+...  ......+.+..
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence            4543 222334556789999999999987643222  1122211    2578999999999854211  11112222334


Q ss_pred             CCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          146 GLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       146 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      +.+++.+||+++.|++++++.+.+.+.+.
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            56789999999999999999998877554

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.37  E-value=8.5e-07  Score=66.64  Aligned_cols=58  Identities=22%  Similarity=0.156  Sum_probs=36.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccC--cccC----cceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIE--FQES----TIGAAFFSQTLAVNDATVKFEIWDTAGQERY   72 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   72 (200)
                      ..++++|++|+|||||+|+|++.....  ..+.    --.++.....+...+    ..++||||...+
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~  184 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF  184 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence            468999999999999999999643321  1111    111333333344432    379999997643

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK14974 cell division protein FtsY; Provisional

Probab=98.36  E-value=1.9e-06  Score=67.39  Aligned_cols=94  Identities=16%  Similarity=0.095  Sum_probs=54.6

Q ss_pred             EEEEEEeCCCcccccc-c---hhhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029           59 VKFEIWDTAGQERYHS-L---APMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK  132 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~  132 (200)
                      +.+.++||+|...... .   ...+  ....|..++|+|......  . ......+...   -.+--+|+||.|....  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~-~~~a~~f~~~---~~~~giIlTKlD~~~~--  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--A-VEQAREFNEA---VGIDGVILTKVDADAK--  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--H-HHHHHHHHhc---CCCCEEEEeeecCCCC--
Confidence            4699999999653211 1   1111  235789999999875421  1 1112222221   1124578999996432  


Q ss_pred             CCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029          133 VTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                        .-.+...+...+.|+..++  +|.+++++.
T Consensus       295 --~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        295 --GGAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             --ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence              2234555556788888776  688887654

>PRK01889 GTPase RsgA; Reviewed

Probab=98.31  E-value=2.6e-06  Score=67.44  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTA  157 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  157 (200)
                      ...++|.+++|++...+.....+.+++......   +++.++|+||+|+.+..   .+....+.. ..+.+++.+|++++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence            367899999999997443344556666655554   56778899999997531   111222222 34678999999999


Q ss_pred             CCHHHHHHHHH
Q 029029          158 TNVNDIFYEIA  168 (200)
Q Consensus       158 ~~i~~~~~~l~  168 (200)
                      .|++++..++.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999988875

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=3.2e-06  Score=70.91  Aligned_cols=116  Identities=18%  Similarity=0.188  Sum_probs=80.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCccc--------------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   73 (200)
                      ..--+|.++-+..-|||||+..|+...-.              -....+-|.+.....+..-..++.+.++|+||+-++.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            44567889999999999999999763221              0112233555555556555678899999999999999


Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL  127 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~  127 (200)
                      ........-+|++++.+|..+.-.-... ..+.....   .+...++|+||+|.
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~---~~~~~~lvinkidr  136 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI---EGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH---ccCceEEEEehhhh
Confidence            9999999999999999999864222111 11111111   23457889999994

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.29  E-value=9.2e-06  Score=65.36  Aligned_cols=134  Identities=13%  Similarity=0.075  Sum_probs=69.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCc-----cc----C-c-----------ccCcceeeEEEEEEEEC------------
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQ-----FI----E-F-----------QESTIGAAFFSQTLAVN------------   55 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~-----~~----~-~-----------~~~~~~~~~~~~~~~~~------------   55 (200)
                      ++.-|+++|++||||||++..|....     ..    . .           +....++.++......+            
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            35679999999999999998886311     00    0 0           01111222221110000            


Q ss_pred             -CeEEEEEEEeCCCcccccc-chh---hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           56 -DATVKFEIWDTAGQERYHS-LAP---MY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        56 -~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                       ...+.+.|+||+|...... ...   .+  ...++-+++|+|......-..   ..+.+...   -.+--+|+||.|..
T Consensus       179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~  252 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGH  252 (429)
T ss_pred             HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCC
Confidence             1246899999999643221 111   11  235788999999875422211   12222221   12466789999964


Q ss_pred             CCCCCCHHHHHHHHHHcCCcEEEe
Q 029029          129 DARKVTAEEAQAYAQENGLFFMET  152 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
                      ..    .-.+.......+.|+..+
T Consensus       253 ar----gG~aLs~~~~t~~PI~fi  272 (429)
T TIGR01425       253 AK----GGGALSAVAATKSPIIFI  272 (429)
T ss_pred             CC----ccHHhhhHHHHCCCeEEE
Confidence            32    222344444556664444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13695 putative NTPase; Provisional

Probab=98.27  E-value=4.4e-05  Score=54.37  Aligned_cols=49  Identities=18%  Similarity=0.181  Sum_probs=32.4

Q ss_pred             CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029          113 NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       113 ~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ..+.|++++.+|...       ......+....+..++++   +.+|-+++.+.+.+.+
T Consensus       124 ~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        124 DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL  172 (174)
T ss_pred             hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence            356789999998542       123445555666777777   5566778888877755

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.27  E-value=5.4e-06  Score=58.14  Aligned_cols=64  Identities=14%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             EEEEEEEeCCCccccccchhhh--------hcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029           58 TVKFEIWDTAGQERYHSLAPMY--------YRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADL  127 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~  127 (200)
                      .....++|++|-.........+        .-..|.+++++|...... ......+...+...      =++|+||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence            3567889999975433333221        234788999999765322 11112233333332      3568999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.26  E-value=1.7e-06  Score=66.60  Aligned_cols=101  Identities=22%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             CCCcc-ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH
Q 029029           66 TAGQE-RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE  144 (200)
Q Consensus        66 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  144 (200)
                      .||+. .-.......+..+|++++|+|..++.+...  .++....    .++|+++|+||+|+.+...  ......+.+.
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            45553 222334456789999999999987643221  1222221    2578999999999854211  1122222334


Q ss_pred             cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          145 NGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      .+.+++.+||+++.|++++++.+.+.+...
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            467789999999999999999988876543

>PRK13796 GTPase YqeH; Provisional

Probab=98.26  E-value=6.6e-06  Score=65.43  Aligned_cols=94  Identities=27%  Similarity=0.298  Sum_probs=60.6

Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH----HHHHHcC
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ----AYAQENG  146 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~----~~~~~~~  146 (200)
                      .+...........+++++|+|+.+..     ..|...+.... .+.|+++|+||+|+... ....+.+.    .+++..+
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g  130 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG  130 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence            34443333333344999999987732     12334444332 26789999999999643 23333333    3355566


Q ss_pred             C---cEEEecCCCCCCHHHHHHHHHHhc
Q 029029          147 L---FFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       147 ~---~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      +   .++.+||+++.|++++++.+.+..
T Consensus       131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        131 LRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            5   588999999999999999997753

>PRK00098 GTPase RsgA; Reviewed

Probab=98.24  E-value=2.5e-06  Score=65.95  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=35.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcc-------eeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI-------GAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      ..++++|++|+|||||+|.|++..... .....       .++.....+..++.   ..++||||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~-~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELK-TGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCC-CcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            468999999999999999998543321 11111       12222333333322   47899999754

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.24  E-value=5.5e-06  Score=74.95  Aligned_cols=112  Identities=20%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhCcccCcc----cCcceeeEE-EEEEEECCeEEEEEEEeCCCcc--------ccccchhhh
Q 029029           13 LVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFF-SQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMY   79 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~   79 (200)
                      .+|+|++|+||||+|..- +..++-..    ....++... .....+.   -+..++||+|..        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~---~~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFT---DEAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEec---CCEEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999976 23332111    011111000 0111111   246699999932        122334444


Q ss_pred             h---------cCCcEEEEEEeCCCH-----HHH----HHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           80 Y---------RGAAAAIIVYDITNQ-----ASF----ERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        80 ~---------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      +         +-.|++|+++|+.+-     +..    ..++..+.++...-....|+.|++||+|+.
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            3         248999999998642     211    233455666666556789999999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.24  E-value=6.4e-07  Score=64.72  Aligned_cols=40  Identities=18%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             CHHHHHHHHHHcCCcEE--EecCCCCCCHHHHHHHHHHhccc
Q 029029          134 TAEEAQAYAQENGLFFM--ETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       134 ~~~~~~~~~~~~~~~~~--~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ...-++.++-...+-+|  +|||.+++-+.|+++.+.+...+
T Consensus       144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e  185 (240)
T COG1126         144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE  185 (240)
T ss_pred             HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence            34445666666666677  89999999999999998886654

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.24  E-value=1.8e-05  Score=56.05  Aligned_cols=135  Identities=16%  Similarity=0.255  Sum_probs=66.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeC-CCccc---------------c---
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT-AGQER---------------Y---   72 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~~---------------~---   72 (200)
                      +|++.|++|+|||||+++++. .......+..|  +.......++....|.+.|. .|...               |   
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~-~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIE-ELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHH-HHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHH-HhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            689999999999999999884 32211112223  33344444555666777776 33110               0   


Q ss_pred             ----cc----chhhhhcCCcEEEEEEeCCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH
Q 029029           73 ----HS----LAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ  143 (200)
Q Consensus        73 ----~~----~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~  143 (200)
                          ..    .....+..+|  ++++|=-.+  ++. ...|.+.+...-+.++|++.++-+...       ...+..+..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~-------~~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSD-------NPFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCC-------cHHHHHHHh
Confidence                00    0111123445  555663322  111 123444444433467888888777731       112566666


Q ss_pred             HcCCcEEEecCCCCCCH
Q 029029          144 ENGLFFMETSAKTATNV  160 (200)
Q Consensus       144 ~~~~~~~~~Sa~~~~~i  160 (200)
                      ..++.+++++..+...+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            77888888876665544

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=3.9e-06  Score=68.84  Aligned_cols=116  Identities=18%  Similarity=0.146  Sum_probs=77.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccC----------------cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE----------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY   72 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   72 (200)
                      +-.+|.+.-+-.+||||+-++.+.-.-..                .....-|++..+......-..+++.++||||+-.+
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            45678888889999999988876421110                01112233443433333334788999999999999


Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      .-.....++--|+.|+++|....-.-....-| ..+.+   .++|.+.++||+|..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r---y~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR---YNVPRICFINKMDRM  169 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh---cCCCeEEEEehhhhc
Confidence            88888889999999999998764222222233 33333   368899999999964

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=5e-07  Score=71.02  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=88.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhC--------cccC--------cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKG--------QFIE--------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY   72 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   72 (200)
                      +-.+|.++..-.+||||.-.+++.-        ....        .....-|.+..+...+++-.++++.++||||+-.+
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            3457899999999999998888651        1110        01122456777777888888899999999999999


Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +-....+++--|+++.|||.+..-....+.-|    +.....++|-..++||+|...
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhh
Confidence            99999999999999999999865333343444    334456788999999999754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.18  E-value=4.5e-06  Score=64.23  Aligned_cols=60  Identities=18%  Similarity=0.223  Sum_probs=37.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCc--cc----CcceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF--QE----STIGAAFFSQTLAVNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   73 (200)
                      ..++++|++|+|||||+|.|++......  ..    ...+++.....+.....   ..++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            5799999999999999999996433211  11    11113333334444322   3689999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.17  E-value=3.3e-06  Score=68.01  Aligned_cols=56  Identities=23%  Similarity=0.208  Sum_probs=46.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      .+.|.+||.||+||||+||.|.|.+.. ..+.++|.+.+..++.+..   .+.+-|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            599999999999999999999966654 4778888888777776644   5889999995

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.11  E-value=0.00016  Score=51.63  Aligned_cols=86  Identities=23%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE  136 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (200)
                      ..+.+.++|+|+...  ......+..+|.++++...+.. +...+..+++.+...   +.++.+|+|+.|...   ....
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence            467899999997642  2334556889999999988753 455556666655543   456789999999643   2345


Q ss_pred             HHHHHHHHcCCcEEE
Q 029029          137 EAQAYAQENGLFFME  151 (200)
Q Consensus       137 ~~~~~~~~~~~~~~~  151 (200)
                      +++++.+..+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677778888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.11  E-value=2.9e-05  Score=61.52  Aligned_cols=141  Identities=13%  Similarity=0.125  Sum_probs=72.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCc---c--------------------eeeEEEEEEE-------ECCeE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST---I--------------------GAAFFSQTLA-------VNDAT   58 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~---~--------------------~~~~~~~~~~-------~~~~~   58 (200)
                      ..-.++|+|++|+||||++..|............   .                    ++......-.       ..-..
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            3457899999999999999998753211100000   0                    1111100000       01124


Q ss_pred             EEEEEEeCCCccccccch----hhh--hcCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCC--CCeEEEEEeCcCccC
Q 029029           59 VKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNP--NMVMALAGNKADLLD  129 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~--~~~~ivv~nK~D~~~  129 (200)
                      ..+.++||+|........    ..+  .....-.++|++.+. .+...++...+.........  ..+-=+|+||.|...
T Consensus       216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~  295 (374)
T PRK14722        216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS  295 (374)
T ss_pred             CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence            568999999965433221    111  123345678888775 44444443333333211000  012346789999532


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEec
Q 029029          130 ARKVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                          ..-.+..+....+.|+..++
T Consensus       296 ----~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 ----NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ----CccHHHHHHHHHCcCeEEEe
Confidence                34446667777788765554

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.09  E-value=1.2e-05  Score=58.34  Aligned_cols=132  Identities=17%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCc---------------------ccCcceeeEEEEEEE-------------ECC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEF---------------------QESTIGAAFFSQTLA-------------VND   56 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~-------------~~~   56 (200)
                      .-|+++|++|+||||.+-+|........                     +....++.+......             ...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            4589999999999999888764221110                     000112222111100             001


Q ss_pred             eEEEEEEEeCCCcccccc----chhhh--hcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           57 ATVKFEIWDTAGQERYHS----LAPMY--YRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      .++.+.++||+|......    ....+  ....+-+++|++.+... .......+++.+    .   +--+|+||.|...
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~---~~~lIlTKlDet~  154 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----G---IDGLILTKLDETA  154 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----S---TCEEEEESTTSSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----c---CceEEEEeecCCC
Confidence            125699999999543221    11111  12577888898887642 232222222211    1   1235789999532


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEec
Q 029029          130 ARKVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                          ..-.+..++...+.|+-.++
T Consensus       155 ----~~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  155 ----RLGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             ----TTHHHHHHHHHHTSEEEEEE
T ss_pred             ----CcccceeHHHHhCCCeEEEE
Confidence                34446777777888866664

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.09  E-value=6.7e-06  Score=62.65  Aligned_cols=59  Identities=24%  Similarity=0.182  Sum_probs=36.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCccc------CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFI------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   73 (200)
                      ..+++|.+|+|||||+|+|......      .....--.++....-+.+++.   =.++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence            5789999999999999999853221      111111123444444555322   3578999987654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.08  E-value=3e-05  Score=55.09  Aligned_cols=83  Identities=13%  Similarity=0.048  Sum_probs=45.1

Q ss_pred             EEEEEEEeCCCcccccc----chhhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           58 TVKFEIWDTAGQERYHS----LAPMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      ...+.++|++|......    ....+  ....+.+++|+|......  .+ .+...+....  + ..-+|.||.|.... 
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~~-  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDAR-  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCCC-
Confidence            45588899999742211    11111  134899999999865422  22 2333333221  2 35677899996442 


Q ss_pred             CCCHHHHHHHHHHcCCcEE
Q 029029          132 KVTAEEAQAYAQENGLFFM  150 (200)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~  150 (200)
                         ...+...+...++|+.
T Consensus       155 ---~g~~~~~~~~~~~p~~  170 (173)
T cd03115         155 ---GGAALSIRAVTGKPIK  170 (173)
T ss_pred             ---cchhhhhHHHHCcCeE
Confidence               2223335666666654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.04  E-value=2.5e-05  Score=62.80  Aligned_cols=114  Identities=17%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH----------HHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA----------SFERAKKWVQELQAQG-NPNMVMALAGNKA  125 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~  125 (200)
                      ....+.++|++|+...+.-|..++.+++++|||+++++-.          .+.+....++.+.... ..+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            4567999999999999999999999999999999987422          1333344455554432 2578999999999


Q ss_pred             CccCC----------------C--CCCHHHHHHHHHH------------cCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029          126 DLLDA----------------R--KVTAEEAQAYAQE------------NGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       126 D~~~~----------------~--~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |+...                .  .-+.+.+..+...            ..+.++.++|.+..+++.+|+.+.+.
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            97321                0  1234555555432            11235588999999999999888764

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.03  E-value=0.00014  Score=56.64  Aligned_cols=90  Identities=18%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCccccccchhhhhc--------CCcEEEEEEeCCCHHH-HHHHHHH-HHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYR--------GAAAAIIVYDITNQAS-FERAKKW-VQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~~-~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ....++++.|..........+..        ..|.+|-|+|..+-.. ...+... ..++...      =++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence            44777888886544333333322        3577899999876422 2212222 2233222      36889999998


Q ss_pred             CCCCCCHHHHHHHHHHc--CCcEEEecCCC
Q 029029          129 DARKVTAEEAQAYAQEN--GLFFMETSAKT  156 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  156 (200)
                      +...  .+..+...+..  ..+++.++...
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~~  186 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSYGD  186 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccccC
Confidence            7653  34444444443  45788887633

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.02  E-value=4.8e-05  Score=52.69  Aligned_cols=58  Identities=17%  Similarity=0.104  Sum_probs=35.7

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                      .+.+.++||+|.....   ..++..+|.+|++..++-.+.+..+ + ...+..      --++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~-k-~~~~~~------~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI-K-AGIMEI------ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh-h-hhHhhh------cCEEEEeCCC
Confidence            4679999998865322   3478899999998877633222111 1 122222      1367899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.02  E-value=4e-05  Score=58.51  Aligned_cols=100  Identities=18%  Similarity=0.164  Sum_probs=71.7

Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEe
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMET  152 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
                      .+.+.-..+.|-.++|+...+|+- ...+.+++-....   .++..++++||+|+.+......+.........+.+++.+
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            344445567888888888888753 3444555544443   356677889999998765444345666777789999999


Q ss_pred             cCCCCCCHHHHHHHHHHhccccCC
Q 029029          153 SAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      |++++.+++++.+++..++.---+
T Consensus       148 s~~~~~~~~~l~~~l~~~~svl~G  171 (301)
T COG1162         148 SAKNGDGLEELAELLAGKITVLLG  171 (301)
T ss_pred             cCcCcccHHHHHHHhcCCeEEEEC
Confidence            999999999999998877655433

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=0.00024  Score=58.61  Aligned_cols=135  Identities=15%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccC----------ccc-------------CcceeeEEEEEEE------E-CCeE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQE-------------STIGAAFFSQTLA------V-NDAT   58 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~~-------------~~~~~~~~~~~~~------~-~~~~   58 (200)
                      ..-.|+|+|++|+||||++..|.......          ...             ...+..+......      + ....
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            35678999999999999998887421100          000             0001111100000      0 0124


Q ss_pred             EEEEEEeCCCccccccch----hhhh-cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029           59 VKFEIWDTAGQERYHSLA----PMYY-RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV  133 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~----~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~  133 (200)
                      +.+.|+||+|........    ..+. ......++|++.+..  ...+...++.+...    .+.-+|+||.|..    .
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt----~  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDET----G  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCc----c
Confidence            679999999964322110    0010 012234566666532  23333333333332    3466899999953    2


Q ss_pred             CHHHHHHHHHHcCCcEEEec
Q 029029          134 TAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~S  153 (200)
                      ..-.+.......+.++..++
T Consensus       499 ~lG~aLsv~~~~~LPI~yvt  518 (559)
T PRK12727        499 RFGSALSVVVDHQMPITWVT  518 (559)
T ss_pred             chhHHHHHHHHhCCCEEEEe
Confidence            34556777777888866664

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=3.6e-05  Score=61.15  Aligned_cols=134  Identities=14%  Similarity=0.106  Sum_probs=71.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCc---------------------ccCcceeeEEEEEE--E----E---C-CeE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEF---------------------QESTIGAAFFSQTL--A----V---N-DAT   58 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~--~----~---~-~~~   58 (200)
                      ...|+|+|++|+||||++..|........                     +....+.......-  .    +   . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            46899999999999999999864211000                     00001111110000  0    0   0 013


Q ss_pred             EEEEEEeCCCccccccc----hhhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029           59 VKFEIWDTAGQERYHSL----APMYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK  132 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~  132 (200)
                      +.+.|+||+|.......    ...++  ...+.+++|+|.+-.  ...+...+..+...    .+--+|+||.|...   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            57999999996432111    11222  245677888887532  12223333333322    12346889999543   


Q ss_pred             CCHHHHHHHHHHcCCcEEEec
Q 029029          133 VTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~S  153 (200)
                       ..-.+..++...++|+..++
T Consensus       392 -k~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             34446667777788765554

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.91  E-value=0.00013  Score=53.62  Aligned_cols=74  Identities=30%  Similarity=0.308  Sum_probs=43.6

Q ss_pred             EEEEeC-CCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC-CeEEEEEeCcCccCCCCCCHHHH
Q 029029           61 FEIWDT-AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEA  138 (200)
Q Consensus        61 ~~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~ivv~nK~D~~~~~~~~~~~~  138 (200)
                      +.+.|| +|.+.+.   +...+++|.+|+|+|++-+ ++....+. ..+...  -+ +++.+|+||.|-.      ....
T Consensus       136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~e--lg~k~i~~V~NKv~e~------e~~~  202 (255)
T COG3640         136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEE--LGIKRIFVVLNKVDEE------EELL  202 (255)
T ss_pred             EEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHH--hCCceEEEEEeeccch------hHHH
Confidence            556665 3333332   3346789999999999864 34333332 333332  23 7899999999942      3334


Q ss_pred             HHHHHHcCC
Q 029029          139 QAYAQENGL  147 (200)
Q Consensus       139 ~~~~~~~~~  147 (200)
                      +..+...+.
T Consensus       203 ~~~~~~~~~  211 (255)
T COG3640         203 RELAEELGL  211 (255)
T ss_pred             HhhhhccCC
Confidence            455555554

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.91  E-value=5.2e-05  Score=42.95  Aligned_cols=47  Identities=23%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             hhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           79 YYRGAAAAIIVYDITN--QASFERAKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                      ...-.++++|++|++.  ..+.+.....++.++... .++|+++|+||+|
T Consensus        10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            3446789999999996  456777778888888873 5899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.91  E-value=7.2e-05  Score=60.24  Aligned_cols=134  Identities=13%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCc-----------------------ceeeEEEEEEE-------ECCeE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-----------------------IGAAFFSQTLA-------VNDAT   58 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~~   58 (200)
                      ..-.|+++|++|+||||++..|.+..........                       .|.......-.       ..-.+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            3458999999999999999988753110000000                       01111000000       01123


Q ss_pred             EEEEEEeCCCccccc----cchhhhh--cCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           59 VKFEIWDTAGQERYH----SLAPMYY--RGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      ..+.++||+|.....    .....+.  ....-.++|++.+- .....+   ++......    -+-=+|+||.|...  
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~---~~~~f~~~----~~~~~I~TKlDEt~--  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE---VISAYQGH----GIHGCIITKVDEAA--  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH---HHHHhcCC----CCCEEEEEeeeCCC--
Confidence            458999999954321    1122221  22445678888874 333333   22222221    12346889999533  


Q ss_pred             CCCHHHHHHHHHHcCCcEEEec
Q 029029          132 KVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                        ..-.+..+....++++..++
T Consensus       341 --~~G~~l~~~~~~~lPi~yvt  360 (420)
T PRK14721        341 --SLGIALDAVIRRKLVLHYVT  360 (420)
T ss_pred             --CccHHHHHHHHhCCCEEEEE
Confidence              34446677777888866664

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=2.7e-05  Score=69.39  Aligned_cols=115  Identities=24%  Similarity=0.183  Sum_probs=64.3

Q ss_pred             EEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEE-CCeEEEEEEEeCCCcc--------ccccchhhh---
Q 029029           13 LVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE--------RYHSLAPMY---   79 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~--------~~~~~~~~~---   79 (200)
                      -+|+|++|+||||++...- ..++- ......+..... +... -.-.-.-.++||.|..        .....|..+   
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            3799999999999977532 22211 110011111000 0100 0112347788999932        223344433   


Q ss_pred             ------hcCCcEEEEEEeCCC-----HHHH----HHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           80 ------YRGAAAAIIVYDITN-----QASF----ERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        80 ------~~~~d~~i~v~d~~~-----~~s~----~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                            .+-.|++|+.+|+.+     +..-    ..++.-++++...-....|+++++||.|+..
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                  235799999999864     2111    1233345566665567899999999999854

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.89  E-value=0.0002  Score=45.27  Aligned_cols=69  Identities=22%  Similarity=0.256  Sum_probs=44.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-hhhhhcCCcEEEEEEe
Q 029029           13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-APMYYRGAAAAIIVYD   91 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   91 (200)
                      +++.|..|+||||+...+......      .|.    ....++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK------RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH------CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999998888732211      111    111111    7999999986533321 1345668899999988


Q ss_pred             CCCH
Q 029029           92 ITNQ   95 (200)
Q Consensus        92 ~~~~   95 (200)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7654

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.87  E-value=1.9e-05  Score=60.10  Aligned_cols=62  Identities=18%  Similarity=0.176  Sum_probs=43.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCccc----CcccCcceeeEEEEE-EEECCeEEEEEEEeCCCc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI----EFQESTIGAAFFSQT-LAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~   69 (200)
                      .+.+.++.|+|-||+|||||||.+......    ......+|++..... +.+.. .-.+.++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence            356889999999999999999998754432    234455566655544 33322 234899999994

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.87  E-value=1.2e-05  Score=62.90  Aligned_cols=58  Identities=17%  Similarity=0.236  Sum_probs=45.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ...+++.|+|.|++||||+||.|..... -.....+|++..-.....+   -.+.|+|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ld---k~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLD---KKIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheecc---CCceeccCCce
Confidence            5679999999999999999999996554 4466777777665555543   36899999994

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.86  E-value=8.3e-05  Score=50.96  Aligned_cols=106  Identities=17%  Similarity=0.196  Sum_probs=60.9

Q ss_pred             EEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC
Q 029029           14 VLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT   93 (200)
Q Consensus        14 ~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   93 (200)
                      +.-|..|+|||++.-.+.. .+........-.+.   ........+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~-~~~~~~~~~~~vd~---D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLAL-ALAKLGKRVLLLDA---DLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHH-HHHHCCCcEEEEEC---CCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            3456789999998666542 11111101110110   00111112789999999753  333356788999999999886


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029           94 NQASFERAKKWVQELQAQGNPNMVMALAGNKADL  127 (200)
Q Consensus        94 ~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~  127 (200)
                      .. ++......++.+.... ...++.+|+|+.+.
T Consensus        78 ~~-s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 PT-SITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             hh-HHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            43 4444444555554432 34567889999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.86  E-value=0.00024  Score=56.35  Aligned_cols=155  Identities=13%  Similarity=0.140  Sum_probs=79.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcc---eeeEEEE-----------------EEEE----------CCeEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI---GAAFFSQ-----------------TLAV----------NDATV   59 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~---~~~~~~~-----------------~~~~----------~~~~~   59 (200)
                      .-.|++|||+|+||||-+-.|.....-.......   +++.+..                 ....          .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            6678999999999999998887544311111111   1111111                 0000          11244


Q ss_pred             EEEEEeCCCccccccc----hhhhhcC--CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029           60 KFEIWDTAGQERYHSL----APMYYRG--AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV  133 (200)
Q Consensus        60 ~~~i~D~~G~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~  133 (200)
                      .+.+.||.|...+...    ...++.-  ..-.-+|++.+..  ...+.+.++.+....-    -=+|+||.|-.    .
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i----~~~I~TKlDET----~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI----DGLIFTKLDET----T  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc----ceeEEEccccc----C
Confidence            6999999996544322    2222222  2334445565543  3344444444433321    23578999943    3


Q ss_pred             CHHHHHHHHHHcCCcEEEecC--CCCCCHHHH-HHHHHHhcccc
Q 029029          134 TAEEAQAYAQENGLFFMETSA--KTATNVNDI-FYEIAKRLPRV  174 (200)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~~-~~~l~~~~~~~  174 (200)
                      ..-.+.......+.|+..++.  .=+.+|... -.||++.+..-
T Consensus       353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~  396 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT  396 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence            455566777777777554442  223344332 22555555443

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=3.7e-05  Score=60.45  Aligned_cols=157  Identities=20%  Similarity=0.179  Sum_probs=91.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc--c-----------------Ccc----------cCcceeeEEEEEEEECC
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF--I-----------------EFQ----------ESTIGAAFFSQTLAVND   56 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--~-----------------~~~----------~~~~~~~~~~~~~~~~~   56 (200)
                      .....++++|+|...+||||+-..++...-  .                 +.+          ...-|.+...-...++-
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            346689999999999999998666543111  0                 000          00111222222333334


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH---HHHH---HHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FERA---KKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~---~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                      ....+.++|+||+..+-..+..-..+||+.++|+.....+-   |+.-   ++. ..+... ..-...|+++||+|-..-
T Consensus       155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREh-a~Lakt-~gv~~lVv~vNKMddPtv  232 (501)
T KOG0459|consen  155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAKT-AGVKHLIVLINKMDDPTV  232 (501)
T ss_pred             cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHH-HHHHHh-hccceEEEEEEeccCCcc
Confidence            45679999999998887666666778999999988754221   2211   111 122221 134568999999995321


Q ss_pred             CCCCH---HH----HHHHHHHcC------CcEEEecCCCCCCHHHHHH
Q 029029          131 RKVTA---EE----AQAYAQENG------LFFMETSAKTATNVNDIFY  165 (200)
Q Consensus       131 ~~~~~---~~----~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  165 (200)
                       .++.   ++    +..+....+      ..|+++|..+|.++++...
T Consensus       233 -nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  233 -NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             -CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence             1111   11    222222222      3589999999999988664

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.84  E-value=0.00014  Score=47.10  Aligned_cols=82  Identities=12%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             EEEECC-CCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           13 LVLLGD-VGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        13 i~vvG~-~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      |+|.|. .|+||||+...|.. .+.....+..     .  +..+ ..+.+.++|+|+....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~-~~~~~~~~vl-----~--~d~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAA-ALARRGKRVL-----L--IDLD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHH-HHHhCCCcEE-----E--EeCC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            567774 58999999777653 2211111111     1  1111 1267999999986532  22366778999999988


Q ss_pred             CCCHHHHHHHHHHHH
Q 029029           92 ITNQASFERAKKWVQ  106 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~  106 (200)
                      .+. .++..+..+++
T Consensus        71 ~~~-~s~~~~~~~~~   84 (104)
T cd02042          71 PSP-LDLDGLEKLLE   84 (104)
T ss_pred             CCH-HHHHHHHHHHH
Confidence            754 35555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.82  E-value=3.3e-05  Score=56.51  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcC
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKAD  126 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D  126 (200)
                      ...|.+.|.+|+...+.-|.+++.++..+++.+..++.          ..+++...++.-+...- ..+.++|+++||-|
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD  277 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  277 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence            34578999999988888899998888877776655432          12333333344333332 24678999999999


Q ss_pred             ccCCC----------------CCCHHHHHHHHHH----cC-----C-cEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          127 LLDAR----------------KVTAEEAQAYAQE----NG-----L-FFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       127 ~~~~~----------------~~~~~~~~~~~~~----~~-----~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      +.++.                +.+...++.+..+    .+     + --..+.|.+..||.-+|..+.+.+...
T Consensus       278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            87642                2233334444322    11     1 123577888899999998887766543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.81  E-value=1.9e-05  Score=56.92  Aligned_cols=111  Identities=16%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             EEEEEeCCCccccccchh---hh---hcC---CcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           60 KFEIWDTAGQERYHSLAP---MY---YRG---AAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        60 ~~~i~D~~G~~~~~~~~~---~~---~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      .+.++|+|||.+.....+   .+   ++.   -=++++++|..= -++...+...+..+...-.-..|-|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            488999999875433221   11   111   125566666541 22333444444444443334678888999999865


Q ss_pred             CCCCCHHH------------------------HHHH-------HHHcCC-cEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          130 ARKVTAEE------------------------AQAY-------AQENGL-FFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       130 ~~~~~~~~------------------------~~~~-------~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      ..  ..++                        ..++       ...+++ .|++....+.++++.++..|-..++
T Consensus       179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            31  1111                        1111       112333 5778888888888888887766554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.81  E-value=0.00052  Score=55.77  Aligned_cols=136  Identities=17%  Similarity=0.119  Sum_probs=71.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccC----------cccC-----------cceeeEEEEEEEE-----------C
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQES-----------TIGAAFFSQTLAV-----------N   55 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~~~-----------~~~~~~~~~~~~~-----------~   55 (200)
                      .++..|+++|++|+||||++..|.......          .+.+           ..+..++......           .
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            346789999999999999988875311100          0000           0111111110000           0


Q ss_pred             CeEEEEEEEeCCCccccccc----hhh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           56 DATVKFEIWDTAGQERYHSL----APM--YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      .....+.++||+|.......    ...  .+..+|.+++|+|.+...   ........+...  . ...-+|+||.|...
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~--l-~i~gvIlTKlD~~a  246 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA--V-GIGGIIITKLDGTA  246 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc--C-CCCEEEEecccCCC
Confidence            01237999999996543211    111  134688999999987642   111222222221  1 12456789999532


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEec
Q 029029          130 ARKVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                          ..--+.......+.|+..++
T Consensus       247 ----~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 ----KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             ----cccHHHHHHHHHCcCEEEEe
Confidence                22335555666677755553

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=0.00017  Score=54.24  Aligned_cols=62  Identities=21%  Similarity=0.348  Sum_probs=43.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcc--eeeE--EEEEEEECCeEEEEEEEeCCC
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI--GAAF--FSQTLAVNDATVKFEIWDTAG   68 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~i~D~~G   68 (200)
                      ....++|+-||.+|.|||||++.|.+..+.....+..  ++..  ..+...-.+...++++.||.|
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            3568999999999999999999999776654433222  1222  222333355677899999999

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.79  E-value=5.6e-05  Score=60.60  Aligned_cols=143  Identities=15%  Similarity=0.220  Sum_probs=73.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccC-c---------------------ccCcceeeEEEEE-E-----EECCeEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE-F---------------------QESTIGAAFFSQT-L-----AVNDATVKF   61 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~-~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~   61 (200)
                      ..-++|+|++||||||++..|....... .                     +....+....... .     ......+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            4468899999999999999887422100 0                     0001111111100 0     001135578


Q ss_pred             EEEeCCCccccc-c---chhhhhc-----CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029           62 EIWDTAGQERYH-S---LAPMYYR-----GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK  132 (200)
Q Consensus        62 ~i~D~~G~~~~~-~---~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~  132 (200)
                      .++||+|..... .   .+..++.     ...-.++|+|.+...  +.+..........    -+--+|+||.|-..   
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~---  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD---  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            999999964211 1   1111221     234677888887542  2222222222221    12346889999532   


Q ss_pred             CCHHHHHHHHHHcCCcEEEecC--CCCCCHHH
Q 029029          133 VTAEEAQAYAQENGLFFMETSA--KTATNVND  162 (200)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~  162 (200)
                       ..-.+...+...+.|+..++.  .-+.++..
T Consensus       374 -~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~  404 (432)
T PRK12724        374 -FLGSFLELADTYSKSFTYLSVGQEVPFDILN  404 (432)
T ss_pred             -CccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence             333466667777887655543  22444444

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.77  E-value=0.00024  Score=46.26  Aligned_cols=103  Identities=16%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             EEEEC-CCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           13 LVLLG-DVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        13 i~vvG-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      |+++| ..|+||||+...|-..-....     |............ ...+.++|+|+...  ......+..+|.++++.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence            34444 478999998776653211110     1111111111111 11799999998643  233456788999999988


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEeC
Q 029029           92 ITNQASFERAKKWVQELQAQGNP-NMVMALAGNK  124 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~ivv~nK  124 (200)
                      .+.. +......+++.+.....+ ...+.+|+|+
T Consensus        74 ~~~~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QDLP-SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CChH-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            7654 566666777776665433 4456677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.0005  Score=59.19  Aligned_cols=135  Identities=13%  Similarity=0.089  Sum_probs=70.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCc-----------------------ceeeEEEEEE-------EECCeEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-----------------------IGAAFFSQTL-------AVNDATVK   60 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~~   60 (200)
                      --|+|+|++|+||||++..|.+......-...                       .++......-       ......+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            46899999999999999998853211100000                       0111100000       00112346


Q ss_pred             EEEEeCCCccccc----cchhhh--hcCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029           61 FEIWDTAGQERYH----SLAPMY--YRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV  133 (200)
Q Consensus        61 ~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~  133 (200)
                      +.|+||+|.....    ......  ....+-.++|+|.+. .+.+.++...+......    .+-=+|+||.|...    
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~----~i~glIlTKLDEt~----  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE----DVDGCIITKLDEAT----  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC----CCCEEEEeccCCCC----
Confidence            9999999943211    111111  224566788888874 33344333322221110    12346799999543    


Q ss_pred             CHHHHHHHHHHcCCcEEEec
Q 029029          134 TAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~S  153 (200)
                      ..-.+..+....++|+..++
T Consensus       338 ~~G~iL~i~~~~~lPI~yit  357 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYVS  357 (767)
T ss_pred             CccHHHHHHHHHCCCeEEEe
Confidence            34446667777788866654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.77  E-value=0.00014  Score=59.01  Aligned_cols=87  Identities=16%  Similarity=0.129  Sum_probs=48.3

Q ss_pred             EEEEEEEeCCCccccc----cchhhhhc---CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           58 TVKFEIWDTAGQERYH----SLAPMYYR---GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                      .+.+.++||+|.....    .....++.   ...-..+|++.+-.  ...+...+..+...   + +--+|+||.|... 
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence            3579999999964332    12222333   23456677777542  12222222222221   1 2257899999532 


Q ss_pred             CCCCHHHHHHHHHHcCCcEEEecC
Q 029029          131 RKVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                         ..-.+..+....++|+..++.
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit~  392 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLTN  392 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEeC
Confidence               344577777888888766653

>PRK10867 signal recognition particle protein; Provisional

Probab=97.76  E-value=0.00013  Score=59.08  Aligned_cols=86  Identities=15%  Similarity=0.047  Sum_probs=47.0

Q ss_pred             EEEEEEEeCCCcccccc-ch---hhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           58 TVKFEIWDTAGQERYHS-LA---PMY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      .+.+.++||+|...... ..   ..+  .-..+.+++|+|.....   ........+...  .+ ..-+|+||.|.... 
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~--~~-i~giIlTKlD~~~r-  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA--LG-LTGVILTKLDGDAR-  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh--CC-CCEEEEeCccCccc-
Confidence            35699999999543211 11   111  12577889999986532   222223333322  11 23567899995322 


Q ss_pred             CCCHHHHHHHHHHcCCcEEEec
Q 029029          132 KVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                         .-.+.......++|+..+.
T Consensus       256 ---gG~alsi~~~~~~PI~fig  274 (433)
T PRK10867        256 ---GGAALSIRAVTGKPIKFIG  274 (433)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe
Confidence               2225666667778765554

>TIGR00959 ffh signal recognition particle protein

Probab=97.75  E-value=0.00023  Score=57.69  Aligned_cols=87  Identities=15%  Similarity=0.063  Sum_probs=48.8

Q ss_pred             EEEEEEEeCCCcccccc-chh---hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           58 TVKFEIWDTAGQERYHS-LAP---MY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      .+.+.++||+|...... ...   .+  .-..+.+++|+|.....   ....+...+....  + ..-+|+||.|...  
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~--  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDA--  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence            45699999999543211 111   11  23578899999987542   2222333333221  1 2356799999532  


Q ss_pred             CCCHHHHHHHHHHcCCcEEEecC
Q 029029          132 KVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                        ..-.+...+...++|+..+..
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              222366667777887665543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.73  E-value=3.8e-05  Score=44.56  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.+|.|++|||||||++++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998764

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.73  E-value=0.002  Score=53.02  Aligned_cols=133  Identities=15%  Similarity=0.159  Sum_probs=67.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcc-----------------------eeeEEEEEEE-------ECCeEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI-----------------------GAAFFSQTLA-------VNDATVK   60 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~   60 (200)
                      --++|+|++|+||||++..|.+......-....                       +.........       ..-.+..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            468999999999999999988532111000000                       0000000000       0011335


Q ss_pred             EEEEeCCCccccccc---hhhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029           61 FEIWDTAGQERYHSL---APMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT  134 (200)
Q Consensus        61 ~~i~D~~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~  134 (200)
                      +.++||+|.......   ....+..   ..-.++|+|.+-.  ...+......+...    ..--+|+||.|..    ..
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~~----~~~g~IlTKlDet----~~  406 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRGP----GLAGCILTKLDEA----AS  406 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhccC----CCCEEEEeCCCCc----cc
Confidence            889999994322211   1111111   2336788887643  12222222222221    2345678999943    23


Q ss_pred             HHHHHHHHHHcCCcEEEec
Q 029029          135 AEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~S  153 (200)
                      .-.+..+....++++..++
T Consensus       407 ~G~~l~i~~~~~lPI~yvt  425 (484)
T PRK06995        407 LGGALDVVIRYKLPLHYVS  425 (484)
T ss_pred             chHHHHHHHHHCCCeEEEe
Confidence            4456777778888866664

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.69  E-value=0.00048  Score=54.67  Aligned_cols=136  Identities=13%  Similarity=0.119  Sum_probs=70.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCc----------c-----------cCcceeeEEEEEE--E-------EC-Ce
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEF----------Q-----------ESTIGAAFFSQTL--A-------VN-DA   57 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~----------~-----------~~~~~~~~~~~~~--~-------~~-~~   57 (200)
                      +.-.++++|++|+||||++..|........          +           ....+..+....-  .       .. ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            345689999999999999998864211000          0           0001111111000  0       00 02


Q ss_pred             EEEEEEEeCCCcccccc----chhhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           58 TVKFEIWDTAGQERYHS----LAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      .+.+.++||+|......    ....+..  ..+..++|.+....  ...+...+..+..    -.+--+|+||.|...  
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~----l~i~glI~TKLDET~--  356 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE----IPIDGFIITKMDETT--  356 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc----CCCCEEEEEcccCCC--
Confidence            36799999999743221    1112222  34666777765332  2222233222211    123456899999532  


Q ss_pred             CCCHHHHHHHHHHcCCcEEEecC
Q 029029          132 KVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                        ..-.+...+...+.|+..++.
T Consensus       357 --~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 --RIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             --CccHHHHHHHHHCCCEEEEec
Confidence              344466777778888666653

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.63  E-value=0.00056  Score=46.44  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ...+++.|++|+|||+|++.+...
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            446899999999999999999853

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.63  E-value=0.0014  Score=51.16  Aligned_cols=95  Identities=7%  Similarity=0.026  Sum_probs=50.0

Q ss_pred             EEEEEEeCCCccccccchhhhhc--------CCcEEEEEEeCCCHHHHH-HHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYR--------GAAAAIIVYDITNQASFE-RAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      ....++++.|..........+..        ..+.+|.|+|..+..... .......++...      =++++||.|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence            45678889887655444444322        247899999987532211 111111223222      367899999875


Q ss_pred             CCCCCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHH
Q 029029          130 ARKVTAEEAQAYAQEN--GLFFMETSAKTATNVNDIF  164 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~  164 (200)
                      ..    +.++...+..  ..+++.++ ........++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            32    3444444443  34566554 2223444444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.63  E-value=4.7e-05  Score=50.65  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|.|++||||||+.+.|..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999974

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.61  E-value=5.3e-05  Score=53.60  Aligned_cols=21  Identities=38%  Similarity=0.702  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ||+|+|++|||||||...|..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998874

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.60  E-value=0.00093  Score=47.70  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++++|++|+|||||++.+.+
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~G   47 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHc
Confidence            3689999999999999999885

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.60  E-value=0.0042  Score=43.66  Aligned_cols=144  Identities=10%  Similarity=0.064  Sum_probs=99.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ....|+++|..+.++..|.+.+....-      .    +.-+...-..       .-.|.  +....    -...|.++|
T Consensus        14 n~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~l~Vh~a~s-------LPLp~--e~~~l----RprIDlIVF   70 (176)
T PF11111_consen   14 NTATILLVGTEEALLQQLAEAMLEEDK------E----FKLKVHLAKS-------LPLPS--ENNNL----RPRIDLIVF   70 (176)
T ss_pred             ceeEEEEecccHHHHHHHHHHHHhhcc------c----eeEEEEEecc-------CCCcc--cccCC----CceeEEEEE
Confidence            478999999999999999999983110      0    1001110000       01111  11111    235799999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ++|.....++..++.-+..+.....-++ +.++++-....+...+..+++.+++..+++|++.+.-....+...+-+.|.
T Consensus        71 vinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL  149 (176)
T PF11111_consen   71 VINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLL  149 (176)
T ss_pred             EEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHH
Confidence            9999999999988887777765544454 445555565555567889999999999999999998888888888888888


Q ss_pred             HhccccCC
Q 029029          169 KRLPRVQP  176 (200)
Q Consensus       169 ~~~~~~~~  176 (200)
                      +.+..-.+
T Consensus       150 ~~lqi~aG  157 (176)
T PF11111_consen  150 RMLQICAG  157 (176)
T ss_pred             HHHHHHcC
Confidence            77665444

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.0018  Score=51.90  Aligned_cols=134  Identities=11%  Similarity=0.050  Sum_probs=71.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccC------c-------------------ccCcceeeEEEEEEE-------ECCe
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE------F-------------------QESTIGAAFFSQTLA-------VNDA   57 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~------~-------------------~~~~~~~~~~~~~~~-------~~~~   57 (200)
                      +..|+++|++|+||||.+..|.......      .                   +....++.+......       ....
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            4689999999999999988876421100      0                   000011111111000       0113


Q ss_pred             EEEEEEEeCCCcccccc----chhhhhcC--Cc-EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           58 TVKFEIWDTAGQERYHS----LAPMYYRG--AA-AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                      .+.+.++||+|......    -...++..  .+ -.++|+|.+..  ...+.+.+......    .+--+|+||.|... 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence            46799999999653221    11122222  23 57888888764  23333333333221    12346889999532 


Q ss_pred             CCCCHHHHHHHHHHcCCcEEEec
Q 029029          131 RKVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                         ..-.+..++...+.|+..++
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit  346 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT  346 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe
Confidence               34446666777788765554

>PRK07261 topology modulation protein; Provisional

Probab=97.57  E-value=6.4e-05  Score=53.42  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+|+|+|++|||||||.+.|..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.56  E-value=6.5e-05  Score=54.09  Aligned_cols=24  Identities=17%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ..=|+|+|++|||||||++.|+..
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            345899999999999999999854

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.56  E-value=7.2e-05  Score=53.43  Aligned_cols=23  Identities=39%  Similarity=0.709  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .||+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999854

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.53  E-value=7.3e-05  Score=51.19  Aligned_cols=19  Identities=42%  Similarity=0.746  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 029029           13 LVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~   31 (200)
                      |+++|++||||||+++.|.
T Consensus         2 ii~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999987

...

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.50  E-value=2.7e-05  Score=61.10  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc--ccchhhhhcC
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--HSLAPMYYRG   82 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~~~~~~   82 (200)
                      ......+-|.+||.|++||||+||+|-.... -...|.+|.+-.=..++   --..+.++|+||.--.  .......+  
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkV-CkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL--  375 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKV-CKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL--  375 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhccc-ccccCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh--
Confidence            3456789999999999999999999985443 34555555332111111   1235889999995321  12222222  


Q ss_pred             CcEEEEEEeCCCHHH
Q 029029           83 AAAAIIVYDITNQAS   97 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s   97 (200)
                       -+++=|-.+.+|+.
T Consensus       376 -kGvVRVenv~~pe~  389 (572)
T KOG2423|consen  376 -KGVVRVENVKNPED  389 (572)
T ss_pred             -hceeeeeecCCHHH
Confidence             35566667777654

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.00058  Score=53.76  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcc---------------------cCcceeeEEEEEEE-----------
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ---------------------ESTIGAAFFSQTLA-----------   53 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~-----------   53 (200)
                      ...++--|.++|..|+||||.+-.|..-....-+                     ....++.++.....           
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv  176 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV  176 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence            3345566899999999999988777541110000                     00112222221110           


Q ss_pred             --ECCeEEEEEEEeCCCcccccc-chhh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHH
Q 029029           54 --VNDATVKFEIWDTAGQERYHS-LAPM-----YYRGAAAAIIVYDITNQASFERAKKWVQE  107 (200)
Q Consensus        54 --~~~~~~~~~i~D~~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~  107 (200)
                        +....+.+.|.||.|.+.... +...     -.-+.|-+|+|.|.+-..+-+.....+++
T Consensus       177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~  238 (483)
T KOG0780|consen  177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE  238 (483)
T ss_pred             HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence              123456799999999653221 1111     13368999999999976655554444443

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.49  E-value=0.00074  Score=51.43  Aligned_cols=134  Identities=13%  Similarity=0.098  Sum_probs=71.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccC--------c-------------ccCcceeeEEEEEEE---------E-CCeE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE--------F-------------QESTIGAAFFSQTLA---------V-NDAT   58 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~--------~-------------~~~~~~~~~~~~~~~---------~-~~~~   58 (200)
                      .-+++++|++|+||||++..+.......        .             +....+.......-.         . ....
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            3589999999999999988876431100        0             000011111110000         0 0124


Q ss_pred             EEEEEEeCCCccccc-cc---hhhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029           59 VKFEIWDTAGQERYH-SL---APMYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK  132 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~-~~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~  132 (200)
                      +.+.++||+|..... ..   +..++  ...+-.++|+|.+..  .+.+..++..+...    .+--+|+||.|...   
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~----~~~~~I~TKlDet~---  225 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA---  225 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC----CCCEEEEEeecCCC---
Confidence            679999999965321 11   11122  245678889987642  12223333333221    23456899999543   


Q ss_pred             CCHHHHHHHHHHcCCcEEEec
Q 029029          133 VTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~S  153 (200)
                       ..-.+..++...+.|+..++
T Consensus       226 -~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 -SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             23346666777788766554

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=97.49  E-value=0.0002  Score=53.42  Aligned_cols=124  Identities=17%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCH-------HHHHHHHHHHH---HHHHhC-CCCCeEEEEE
Q 029029           54 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQ-------ASFERAKKWVQ---ELQAQG-NPNMVMALAG  122 (200)
Q Consensus        54 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~---~i~~~~-~~~~~~ivv~  122 (200)
                      +.-...+|+++|.+|+...+.-|..++.+..++|+|...+..       .+.+.+++.+.   .+.... -..+.+|+++
T Consensus       197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL  276 (379)
T KOG0099|consen  197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL  276 (379)
T ss_pred             EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence            334456799999999999999999999999999999887641       12334443333   332222 2456799999


Q ss_pred             eCcCccCCC----------------------------CCCHHH--HHHH----HHH---------cCCcEEEecCCCCCC
Q 029029          123 NKADLLDAR----------------------------KVTAEE--AQAY----AQE---------NGLFFMETSAKTATN  159 (200)
Q Consensus       123 nK~D~~~~~----------------------------~~~~~~--~~~~----~~~---------~~~~~~~~Sa~~~~~  159 (200)
                      ||.|+....                            ..+...  +..+    +.+         +-+-+..+.|.+.++
T Consensus       277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen  356 (379)
T KOG0099|consen  277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN  356 (379)
T ss_pred             cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence            999984321                            000100  1111    111         113355778899999


Q ss_pred             HHHHHHHHHHhccccCCC
Q 029029          160 VNDIFYEIAKRLPRVQPA  177 (200)
Q Consensus       160 i~~~~~~l~~~~~~~~~~  177 (200)
                      |..+|+...+.++.++-.
T Consensus       357 IrrVFnDcrdiIqr~hlr  374 (379)
T KOG0099|consen  357 IRRVFNDCRDIIQRMHLR  374 (379)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999998888776543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.48  E-value=9.5e-05  Score=54.44  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -|+|+|++|||||||++-+-+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999998753

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.47  E-value=0.0001  Score=54.71  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |.++|++|||||||++.+.+
T Consensus        32 vsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998875

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.46  E-value=0.00015  Score=49.54  Aligned_cols=20  Identities=45%  Similarity=0.777  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|+|++|||||||++.|..
T Consensus         2 i~i~GpsGsGKstl~~~L~~   21 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLE   21 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999984

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.45  E-value=0.0049  Score=43.72  Aligned_cols=84  Identities=13%  Similarity=0.020  Sum_probs=51.7

Q ss_pred             EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH
Q 029029           60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ  139 (200)
Q Consensus        60 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~  139 (200)
                      .+.++|+|+....  .....+..+|.+|++.+.+.. +......+++.+...  ......+++|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence            6999999986432  234556889999999887653 444555555555543  22356789999985432  1222234


Q ss_pred             HHHHHcCCcEE
Q 029029          140 AYAQENGLFFM  150 (200)
Q Consensus       140 ~~~~~~~~~~~  150 (200)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44455666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.44  E-value=0.00011  Score=50.04  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.|.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            6899999999999999998853

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.44  E-value=9.3e-05  Score=52.48  Aligned_cols=24  Identities=38%  Similarity=0.565  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      .=++|.||+|+|||||++.|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999999654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.43  E-value=0.002  Score=53.57  Aligned_cols=21  Identities=38%  Similarity=0.569  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      +++.||+||||||.++.|...
T Consensus        48 LlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999998753

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.41  E-value=0.0003  Score=57.10  Aligned_cols=136  Identities=19%  Similarity=0.182  Sum_probs=83.4

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCc--------------ccCcceeeEEEEEEE----------------
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF--------------QESTIGAAFFSQTLA----------------   53 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~----------------   53 (200)
                      |++...-.++.++-+..-|||||-..|....-.-.              ....-+++..+..+.                
T Consensus        13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~   92 (842)
T KOG0469|consen   13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE   92 (842)
T ss_pred             hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence            34555566788999999999999998864221100              011112332222221                


Q ss_pred             ECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC-CCC
Q 029029           54 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-ARK  132 (200)
Q Consensus        54 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~-~~~  132 (200)
                      -++.++-+.++|.||+-.+.......++-.|+.++|+|..+.-....-.-+.+.+..    .+.-++++||.|..- +.+
T Consensus        93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq  168 (842)
T KOG0469|consen   93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQ  168 (842)
T ss_pred             CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhc
Confidence            134467799999999999999888999999999999998764322211111222322    244567899999642 234


Q ss_pred             CCHHHHHHHHH
Q 029029          133 VTAEEAQAYAQ  143 (200)
Q Consensus       133 ~~~~~~~~~~~  143 (200)
                      .+.+++-+-.+
T Consensus       169 ~~~EeLyqtf~  179 (842)
T KOG0469|consen  169 LSQEELYQTFQ  179 (842)
T ss_pred             CCHHHHHHHHH
Confidence            55555444433

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.40  E-value=0.0014  Score=53.79  Aligned_cols=88  Identities=10%  Similarity=0.010  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029           85 AAIIVYDITNQA---SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        85 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      .+|+|=|+-+..   ..+..+..+.....+  ...|+|++++-+-....+...-.....+....++..+........-++
T Consensus       196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~--g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MK  273 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSETFREVLRLYVSI--GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMK  273 (634)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHHHHhc--CCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHH
Confidence            357777765422   233344444433333  678899998877653322111112233335556666666655555566


Q ss_pred             HHHHHHHHhcccc
Q 029029          162 DIFYEIAKRLPRV  174 (200)
Q Consensus       162 ~~~~~l~~~~~~~  174 (200)
                      ..+..++......
T Consensus       274 K~L~ric~~e~~~  286 (634)
T KOG1970|consen  274 KFLKRICRIEANK  286 (634)
T ss_pred             HHHHHHHHHhccc
Confidence            6666666554443

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.40  E-value=0.00017  Score=43.06  Aligned_cols=20  Identities=25%  Similarity=0.619  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |++.|++|+||||+.+.|..
T Consensus         2 i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.40  E-value=9.6e-05  Score=51.98  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=17.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999743

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.39  E-value=0.00022  Score=52.34  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+...|+|.|++|||||||.+.|..
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999999874

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.36  E-value=0.00021  Score=52.35  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....-|+|+|++|||||||++.|..
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            34566788999999999999999974

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.36  E-value=0.00034  Score=49.56  Aligned_cols=39  Identities=21%  Similarity=0.195  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHcCCcEE--EecCCCCCCHHHHHHHHHHhccc
Q 029029          135 AEEAQAYAQENGLFFM--ETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       135 ~~~~~~~~~~~~~~~~--~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ..-++.++-...+.+|  ++||.+++-+-+++..+.+...+
T Consensus       161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE  201 (256)
T COG4598         161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE  201 (256)
T ss_pred             HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence            4445556656666666  89999999999999888877655

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.34  E-value=0.00021  Score=51.00  Aligned_cols=22  Identities=41%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .-.++|+|++|+|||||++.++
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3468999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.33  E-value=0.0012  Score=48.04  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -|+|+|++||||||+++.++..
T Consensus         3 lilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999998743

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.32  E-value=0.00028  Score=50.04  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...-+.|+|++|||||||+++++.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHH
Confidence            344689999999999999999984

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.31  E-value=0.0002  Score=53.84  Aligned_cols=20  Identities=35%  Similarity=0.494  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++++||+|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999985

>PRK01889 GTPase RsgA; Reviewed

Probab=97.31  E-value=0.00033  Score=55.63  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      -+++|+|.+|+|||||++.|++..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            479999999999999999998643

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.31  E-value=0.00031  Score=50.15  Aligned_cols=21  Identities=38%  Similarity=0.629  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -|+|+|++|||||||++.|..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999985

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK06217 hypothetical protein; Validated

Probab=97.30  E-value=0.00023  Score=51.10  Aligned_cols=22  Identities=18%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+|+|+|.+|||||||...|..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~   23 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAE   23 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.29  E-value=0.00025  Score=48.62  Aligned_cols=21  Identities=19%  Similarity=0.544  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|+|+.|||||||+..|++
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~   22 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLIN   22 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999985

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.28  E-value=0.00025  Score=46.07  Aligned_cols=21  Identities=33%  Similarity=0.719  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      -.++++|++|||||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            457999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.28  E-value=0.00023  Score=51.69  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      -=.+++||+|||||||++.|.
T Consensus        34 ~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          34 KVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             ceEEEECCCCcCHHHHHHHHH
Confidence            345999999999999999885

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.28  E-value=0.0022  Score=52.09  Aligned_cols=52  Identities=17%  Similarity=0.209  Sum_probs=33.1

Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                      ...+..+.+++++|+= .++.--+..++++++..++.....++.+++|-.|.+
T Consensus       150 EIlKaLyr~a~iLILD-EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         150 EILKALYRGARLLILD-EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             HHHHHHhcCCCEEEEc-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            3455567888877761 112222345666777777766667888888888876

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.28  E-value=0.00027  Score=52.71  Aligned_cols=25  Identities=24%  Similarity=0.553  Sum_probs=22.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...++++|+|++|||||+|+..|+.
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~   35 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLY   35 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999884

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.27  E-value=0.00024  Score=51.11  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999643

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.27  E-value=0.0016  Score=49.96  Aligned_cols=109  Identities=12%  Similarity=0.242  Sum_probs=64.4

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc------------
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER------------   71 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------   71 (200)
                      .+...+--+++++|++|-|||++++++....... ....             .....+....+|....            
T Consensus        55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~l  120 (302)
T PF05621_consen   55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-------------AERIPVVYVQMPPEPDERRFYSAILEAL  120 (302)
T ss_pred             CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-------------CccccEEEEecCCCCChHHHHHHHHHHh
Confidence            3555666789999999999999999999544322 1111             1123556666655211            


Q ss_pred             ------------cccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcC
Q 029029           72 ------------YHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQG-NPNMVMALAGNKAD  126 (200)
Q Consensus        72 ------------~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D  126 (200)
                                  ........++...+=++++|=-+   ..+....+..+..++... .-++|+|.+++.--
T Consensus       121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A  191 (302)
T PF05621_consen  121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA  191 (302)
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence                        11112234566777788888533   123334444455555432 36889999987654

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.00024  Score=53.20  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+||.|+|||||+..+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            468999999999999999996

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.26  E-value=0.00029  Score=47.42  Aligned_cols=24  Identities=21%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      -.++|+|++|+||||++..+....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcc
Confidence            468999999999999999998543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.26  E-value=0.00027  Score=50.45  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998743

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.26  E-value=0.0019  Score=50.98  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...+|+|.|++|||||||++.|++
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~  184 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLIS  184 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHc
Confidence            467899999999999999999984

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.25  E-value=0.00029  Score=51.80  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=16.2

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRF   30 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l   30 (200)
                      +-.+|+|||||||||..+-.
T Consensus         3 fgqvVIGPPgSGKsTYc~g~   22 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGM   22 (290)
T ss_pred             cceEEEcCCCCCccchhhhH
Confidence            44689999999999976654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.00026  Score=52.12  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            379999999999999999974

>TIGR00235 udk uridine kinase

Probab=97.25  E-value=0.00039  Score=50.95  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...-|+|+|++|||||||++.|.+
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHH
Confidence            346689999999999999999984

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.24  E-value=0.00031  Score=47.15  Aligned_cols=20  Identities=30%  Similarity=0.595  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |++.|++|+|||++++.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            68999999999999999984

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.24  E-value=0.00026  Score=47.39  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998743

...

>PRK03839 putative kinase; Provisional

Probab=97.24  E-value=0.00029  Score=50.42  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.23  E-value=0.00032  Score=50.50  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++|+|++|||||||++.|++
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~   47 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLA   47 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45799999999999999999984

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.23  E-value=0.00032  Score=49.78  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =.++|+|++|+|||||+|-+.+
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHh
Confidence            3689999999999999998875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.00027  Score=55.21  Aligned_cols=21  Identities=43%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ++++||+|||||||++.+.+-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999863

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.0024  Score=51.48  Aligned_cols=23  Identities=26%  Similarity=0.622  Sum_probs=20.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-+|+||||.|+|||||+.-|++
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~G  635 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIG  635 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhc
Confidence            45899999999999999999885

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.22  E-value=0.00044  Score=49.25  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHh
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +..+..-|+++|++||||||+.+.|..
T Consensus         3 ~~~~~~~I~i~G~~GsGKst~a~~l~~   29 (176)
T PRK05541          3 MKPNGYVIWITGLAGSGKTTIAKALYE   29 (176)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            445567899999999999999998863

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.22  E-value=0.00031  Score=51.00  Aligned_cols=20  Identities=20%  Similarity=0.536  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|.|++|||||||++.|.+
T Consensus         2 igi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.21  E-value=0.00038  Score=51.77  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...++|+|+|+|||||||+...|..
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999998864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.20  E-value=0.00032  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            5799999999999999999853

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK14530 adenylate kinase; Provisional

Probab=97.20  E-value=0.00035  Score=51.52  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+|+|+|++||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998863

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.19  E-value=0.0019  Score=50.42  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+|+|.|++|||||||++.|+.
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~  166 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIA  166 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999985

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.18  E-value=0.00033  Score=50.54  Aligned_cols=21  Identities=52%  Similarity=0.732  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|+|||||++.+.+
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G   40 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNG   40 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            579999999999999999885

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.18  E-value=0.00035  Score=51.03  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999853

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.18  E-value=0.00033  Score=51.39  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|+|||||++.+.+
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~G   47 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILAT   47 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhC
Confidence            789999999999999999985

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.18  E-value=0.00034  Score=51.34  Aligned_cols=22  Identities=27%  Similarity=0.387  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.+.+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999853

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.17  E-value=0.00037  Score=51.33  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|+|||||++.+.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G   51 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILG   51 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            579999999999999999985

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.16  E-value=0.00037  Score=52.04  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999853

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.16  E-value=0.002  Score=43.65  Aligned_cols=24  Identities=42%  Similarity=0.783  Sum_probs=20.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .--|++.|+.|+|||||++.+...
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            346899999999999999999854

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.15  E-value=0.0004  Score=51.05  Aligned_cols=22  Identities=41%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.+.+-
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999853

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13949 shikimate kinase; Provisional

Probab=97.15  E-value=0.00046  Score=48.94  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +|+|+|++||||||+...|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.15  E-value=0.00039  Score=49.87  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      --|+|+|++||||||+++.|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            358899999999999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.14  E-value=0.00041  Score=50.98  Aligned_cols=21  Identities=38%  Similarity=0.556  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|+|||||++.+.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G   48 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAG   48 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999985

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-95
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-69
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-68
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-68
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-68
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-68
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-68
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-68
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-68
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-67
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-67
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-66
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		7e-66
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-65
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		9e-50
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-49
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-47
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-45
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-40
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-39
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-39
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		5e-39
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-39
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-39
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		8e-39
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-38
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-38
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-38
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-38
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-38
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-38
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-38
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-38
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-38
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-37
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-37
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-37
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-37
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-37
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		5e-37
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-36
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		5e-36
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-36
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-36
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		6e-36
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		7e-36
4fmc_B	171	Espg-Rab1 Complex Length = 171		9e-36
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-35
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-35
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-35
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-35
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-35
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-35
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-35
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-35
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-35
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-35
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-35
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-35
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-35
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-35
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-35
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-35
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		7e-35
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		7e-35
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-34
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-34
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		9e-34
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-33
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-33
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		3e-33
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-33
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		9e-33
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-32
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-30
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-30
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-29
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-29
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-29
1vg1_A	185	Gdp-bound Rab7 Length = 185		4e-29
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-29
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		8e-29
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-28
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-28
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-28
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-27
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-27
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-27
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-27
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		8e-27
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-26
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-26
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-26
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		5e-26
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-25
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		7e-25
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		5e-24
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		6e-24
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		7e-24
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-23
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-23
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-23
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-23
1byu_A	216	Canine Gdp-Ran Length = 216		2e-23
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-23
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-23
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-23
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-23
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-23
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-23
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-23
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		9e-23
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-22
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-22
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-22
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-22
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-22
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		4e-22
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-22
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-22
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		8e-22
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		9e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		9e-22
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-21
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-21
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-21
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-21
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		4e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-21
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-21
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		7e-21
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		7e-21
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		7e-21
3icq_B	171	Karyopherin Nuclear State Length = 171		8e-21
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-20
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-19
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-19
4q21_A	189	Molecular Switch For Signal Transduction: Structura		4e-19
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-19
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-18
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-18
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-18
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-18
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-18
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-18
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-18
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-18
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-18
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-18
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-18
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		4e-18
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		4e-18
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		4e-18
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-18
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-18
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-18
1wq1_R	166	Ras-Rasgap Complex Length = 166		5e-18
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-18
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-18
6q21_A	171	Molecular Switch For Signal Transduction: Structura		6e-18
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		6e-18
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		7e-18
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		8e-18
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		9e-18
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-17
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-17
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-17
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-17
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-17
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-17
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-17
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-17
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-17
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-17
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-17
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-17
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-17
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-17
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-17
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-17
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		5e-17
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		5e-17
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		5e-17
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-17
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-17
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-17
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-16
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-16
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-16
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-16
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-16
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-16
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-16
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		3e-16
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		4e-16
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		6e-16
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		6e-16
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-15
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-15
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-15
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		9e-15
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-14
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-14
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-14
1mh1_A	186	Small G-Protein Length = 186		4e-14
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-14
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		5e-14
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		6e-14
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		7e-14
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		7e-14
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		8e-14
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		8e-14
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-13
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-13
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-13
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-13
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-13
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-13
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-13
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-13
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-13
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-13
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-13
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-13
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-13
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		7e-13
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		7e-13
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		7e-13
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		8e-13
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		8e-13
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-12
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-12
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-12
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-12
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		7e-12
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		7e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		7e-12
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-12
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-12
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		9e-12
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-11
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-11
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-11
2kb0_A	178	Cdc42(T35a) Length = 178		2e-11
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-11
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-11
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-11
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-11
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-11
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-11
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-11
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-11
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-11
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-11
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		4e-11
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		4e-11
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		4e-11
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-11
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		5e-11
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		5e-11
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		5e-11
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-10
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-10
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-10
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-10
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		1e-09
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-09
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		8e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-08
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-08
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		6e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		6e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		6e-08
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		6e-08
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		7e-08
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		7e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-07
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-07
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-07
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		6e-07
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		7e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		1e-06
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		1e-06
2bmj_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		6e-06
2iwr_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		8e-06
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		2e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-05
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		4e-04
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		4e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		5e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		5e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		6e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		8e-04

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  343 bits (881), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 164/179 (91%), Positives = 172/179 (96%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
           AGNK+DLLDARKVTAE+AQ YAQENGLFFMETSAKTATNV +IFYEIA+RLPRVQP  N
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  256 bits (653), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/173 (69%), Positives = 143/173 (82%)
Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           + +K    KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +Q++ ++D TVKFEI
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGN 123
           WDTAGQERYHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGN
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
           KADL + R V  EEAQAYA +N L FMETSAKTA NVND+F  IAK+LP+ +P
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 174

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  255 bits (652), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  255 bits (652), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 2   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 62  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  255 bits (651), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1   GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1   GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1   GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  254 bits (648), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1   GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  254 bits (648), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 141/169 (83%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1   GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  250 bits (638), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 139/169 (82%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 2   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAP YYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 62  DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L F ETSAKT+ NVN+IF  IAK+LP+
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  250 bits (638), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 119/168 (70%), Positives = 139/168 (82%)
Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
           NK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWD
Sbjct: 1   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
           TAG ERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKA
Sbjct: 61  TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           DL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  246 bits (628), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/161 (73%), Positives = 134/161 (83%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAG ER
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           YHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
            V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+LP
Sbjct: 127 AVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 118/160 (73%), Positives = 134/160 (83%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAGQER
Sbjct: 5   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           YHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R
Sbjct: 65  YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 124
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+L
Sbjct: 125 AVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  243 bits (621), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 133/160 (83%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVLLG+   GKSSLVLRFVKGQF E+QESTI AAF +QT+ ++D TVKFEIWDTAGQER
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           YHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+L
Sbjct: 127 AVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  192 bits (489), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 117/164 (71%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVLLG+   GKSS+VLRFV   F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD-- 129
           + SLAP YYR A AA++VYD+T   SF +A+ WV+EL  Q + ++++AL GNK D L   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 130 -ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
             RKV  EE +  A+E GL F ETSAKT  NVND+F  I +++P
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 119/168 (70%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           +HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R
Sbjct: 85  FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
           +V  ++A+ YA+  G   +ETSAK A N+ ++F  I++++P + P  N
Sbjct: 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 115/161 (71%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER
Sbjct: 7   KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G P++V+A+AGNK DL D R
Sbjct: 67  FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
           +V   +A+ YA      F+ETSAK A N+N++F EI++R+P
Sbjct: 127 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 114/161 (70%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ LLGD G GKSS++ RFV+  F      TIGA+F ++T+   +   KF IWDTAG ER
Sbjct: 8   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G P++V+A+AGNK DL D R
Sbjct: 68  FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
           +V   +A+ YA      F+ETSAK A N+N++F EI++R+P
Sbjct: 128 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 122/200 (61%), Gaps = 4/200 (2%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D T++ ++W
Sbjct: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAG ER+ SL P Y R +AAA++VYDITN  SF++  KW+ +++ +   ++++ L GNK
Sbjct: 68  DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 184
            DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP ++   + S   
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 187
Query: 185 LMD----RPGERTASASCCS 200
           ++D    +P E+  S   CS
Sbjct: 188 MIDIKLEKPQEQPVSEGGCS 207

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 106/160 (66%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE 
Sbjct: 12  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R
Sbjct: 72  FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V  EE +A+A+E+GL FMETSAKTA+NV + F   AK +
Sbjct: 132 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 111/163 (68%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQER
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 82  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 141
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
            V  +EA+A+A++NGL F+ETSA  +TNV   F  I   + R+
Sbjct: 142 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 110/163 (67%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y  +   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
            V  +EA+A+A++N L F+ETSA  +TNV + F  I   + R+
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 119/199 (59%), Gaps = 4/199 (2%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++W
Sbjct: 11  GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAG ER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK
Sbjct: 71  DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 184
            DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP ++   + S   
Sbjct: 131 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 190
Query: 185 LMD----RPGERTASASCC 199
           ++D    +P E+  S   C
Sbjct: 191 MIDIKLEKPQEQPVSEGGC 209

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 21/209 (10%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF K +F    +STIG  F ++TL +    +K +IWDTAGQER
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A+IVYDI+  +S+E    W+ EL+   + N+ + L GNK+DL   R
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE----IAKRLPRVQ------------ 175
            V  EE++ +AQEN L F ETSA  + NV+  F E    I +++ + Q            
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNA 194
Query: 176 ---PAPNPSGMVLMDRPGE--RTASASCC 199
               APN   + L   P E  +    +CC
Sbjct: 195 NGASAPNGPTISLTPTPNENKKANGNNCC 223

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 107/161 (66%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D T++ ++WDTAGQER
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + SL P Y R +AAA++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R
Sbjct: 68  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
           +V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 168

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 105/162 (64%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT + +F     W+++ +   + NMV+ L GNK+DL   R
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
            V  EE +A+A+E+GL FMETSAKTA NV + F   AK + R
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 107/160 (66%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VT EEA+ +A+ENGL F+E SAKT  NV D F E AK++
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 108/156 (69%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
            V  +EA+A+A++NGL F+ETSA  +TNV   F  I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 106/168 (63%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++W
Sbjct: 9   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQER+ SL P Y R +  A++VYDITN  SF +  KW+ +++ +   ++++ L GNK
Sbjct: 69  DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
            DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 104/160 (65%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV LG+   GK+S++ RF    F    +STIG  F S+TL +++  V+ ++WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + SL P Y R +AAAI+VYDITN+ SFE   KW+Q++  +   ++++AL GNK DL D R
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 122
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           KVT EE    AQE    F ETSAK   N+  +F + A +L
Sbjct: 123 KVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           ++T EE +  A+E  + F+ETSAKT  NV  +F  +A  L
Sbjct: 124 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 110/163 (67%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAG ER
Sbjct: 10  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 70  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
            V  +EA+A+A++NGL F+ETSA  +TNV   F  I   + R+
Sbjct: 130 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + +   STIG  F  +T+++ + TVK +IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   IIVYD+T++ SF+  K+W+QE+      N+   L GNK DL+  R
Sbjct: 71  FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKR 130
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQ 175
            VT++E +  A  +G+ F+ETSAK A NV   F+ +A  +  RVQ
Sbjct: 131 VVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 113/183 (61%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++W
Sbjct: 1   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAG ER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK
Sbjct: 61  DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMV 184
            DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP ++   + S   
Sbjct: 121 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 180
Query: 185 LMD 187
           ++D
Sbjct: 181 MID 183

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 107/156 (68%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAG ER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
            V  +EA+A+A++NGL F+ETSA  +TNV   F  I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 106/160 (66%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQ R
Sbjct: 32  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R
Sbjct: 92  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 151
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VT EEA+ +A+ENGL F+E SAKT  NV D F E AK++
Sbjct: 152 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 107/156 (68%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAG ER
Sbjct: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 132
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
            V  +EA+A+A++NGL F+ETSA  +TNV   F  I
Sbjct: 133 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 107/156 (68%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAG ER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 67  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
            V  +EA+A+A++NGL F+ETSA  +TNV   F  I
Sbjct: 127 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 103/157 (65%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168
           +V+ EE +  A+E  + F+ETSAK   NV  +F  +A
Sbjct: 123 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 109/167 (65%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G++  + K+VLLG+   GK+SLVLR+ + +F +   +T+GA+F ++ L +    V   IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQER+H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            DL   R V+ +EA++YA+  G     TSAK    + ++F ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 1/171 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ + N+  +K +IWDTAGQE
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           RY ++   YYRGA  A++VYDIT + SFE  +KW++EL+   + N+V+ L GNK+DL   
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 181
           R +   +A  YA++  L F+ETSA  ATNV   F+++   +  V+     +
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQAT 179

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 108/167 (64%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G++  + K+VLLG+   GK+SLVLR+ + +F +   +T+ A+F ++ L +    V   IW
Sbjct: 15  GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 74
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQER+H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK
Sbjct: 75  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 134
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            DL   R V+ +EA++YA+  G     TSAK    + ++F ++ KR+
Sbjct: 135 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSG 182
            V    A+ +A   G+ F+ETSAK ATNV   F  +A  +  R+ P     G
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 108/167 (64%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G++  + K+VLLG+   GK+SLVLR+ + +F +   +T+ A+F ++ L +    V   IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQER+H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            DL   R V+ +EA++YA+  G     TSAK    + ++F ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 87  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 146
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+
Sbjct: 147 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYDIT++ +F   K+W + +    N    + L GNK+D ++ R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 101/168 (60%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+G+ G GKS L+LRF    +     STIG  F  +T+ ++  TVK +IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRG+   IIVYD+T+Q SF   K W+QE+       ++  L GNK DL D R
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
            V  + A+ +A  N + F+ETSA  +TNV D F  +A+++       N
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKR 170
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 101/168 (60%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+G+ G GKS L+LRF    +     STIG  F  +T+ ++  TVK +IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRG+   IIVYD+T+Q SF   K W+QE+       ++  L GNK DL D R
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
            V  + A+ +A  N + F+ETSA  +TNV D F  +A+++       N
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 177

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   +
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 105/164 (64%)
Query: 8   NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
           N   K+VL+G+ G GK++L+ RF + +F     +TIG  F ++T+ +  A VK +IWDTA
Sbjct: 23  NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 82
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
           G ERY ++   YYRGA  A++V+D+T   ++   ++W++EL       +V+ L GNK+DL
Sbjct: 83  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
             AR+V  EEA+ +A+ NGL F+ETSA  +TNV   F  + K +
Sbjct: 143 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 103/160 (64%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++G  G GKS L+ +F++ +F +    TIG  F S+ + V   TVK +IWDTAGQER
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT++ ++     W+ + +   +PN+V+ L GNK DL   R
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +VT  EA  +AQEN L F+ETSA T  NV + F + A+ +
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 105/164 (64%)
Query: 8   NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
           N   K+VL+G+ G GK++L+ RF + +F     +TIG  F ++T+ +  A VK +IWDTA
Sbjct: 8   NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
           G ERY ++   YYRGA  A++V+D+T   ++   ++W++EL       +V+ L GNK+DL
Sbjct: 68  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
             AR+V  EEA+ +A+ NGL F+ETSA  +TNV   F  + K +
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   +
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 100/156 (64%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF   +F    +STIG  F ++T+ V +  +K +IWDTAG ER
Sbjct: 12  KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A+IVYDI+  +S+E    W+ EL+   + N+ + L GNK+DL   R
Sbjct: 72  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLR 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
            V  +EA+ +A EN + F ETSA  + NV+  F E+
Sbjct: 132 AVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYDIT++ +F   K+W + +    N    + L GNK+D  + R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK ++WDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T++ +F   K+W + +    N    + L GNK+D ++ R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 140
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK ++WDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T++ +F   K+W + +    N    + L GNK+D ++ R
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 104/160 (65%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+G+ G GK+ LV RF +G F   Q +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYR A A I+ YDIT + SF    +W++E++   +  ++  L GNK DL + R
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V+ + A+ +++   ++++ETSAK + NV  +F ++A RL
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 108/199 (54%), Gaps = 40/199 (20%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV----------------- 54
           K VLLG+   GKSS+VLR  K  F E   +TIGA+F +  + +                 
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 55  --------------------NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN 94
                               N   +KF+IWDTAGQERY S+ P+YYRGA  AI+V+DI+N
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95  QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 154
             + +RAK WV +L+     N ++ L  NK D  +  +V   E Q YAQ+N L F++TSA
Sbjct: 129 SNTLDRAKTWVNQLKIS--SNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 155 KTATNVNDIFYEIAKRLPR 173
           KT TN+ +IFY +A+ + +
Sbjct: 186 KTGTNIKNIFYMLAEEIYK 204

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 100/161 (62%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+G+ G GKS L+LRF    +     STIG  F  +T+ ++  TVK +IWDTAGQER
Sbjct: 23  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRG+   IIVYD+T+Q SF   K W+QE+       ++  L GNK DL D R
Sbjct: 83  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 142
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
            V  + A+ +A  N + F+ETSA  +TNV D F  +A+++ 
Sbjct: 143 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 183

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L G K DL   +
Sbjct: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKK 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F     EI KR+
Sbjct: 130 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK ++WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T++ +F   K+W + +    N    + L GNK+D  + R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  139 bits (351), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 103/160 (64%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAGQER
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +VT  EA  +AQEN L F+ETSA T  NV + F + A+++
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
Query: 8   NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDT 66
           ++  K++L+GD G GK+ L++RF  G F+     ST+G  F ++ L V+   VK ++WDT
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126
           AGQER+ S+   YYR A A +++YD+TN+ASF+  + W+ E+      ++ + L GNK D
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
               R V  E+ +  A+E GL FMETSAKT  NV+  F  IAK L R
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVL+GD   GK+ +V RF  G F E Q STIG  F  +TL +    VK +IWDTAGQER
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYR A  AI+ YDIT ++SF     W+++++     N+V  L GNK+DL + R
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150
Query: 132 KVTAEEAQAYAQENGLFF-METSAKTATNVNDIFYEIAKRLPRVQPAP 178
           +V+  EAQ+ A+   +   +ETSAK ++NV + F  +A  L      P
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 103/160 (64%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAGQER
Sbjct: 13  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R
Sbjct: 73  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 132
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +VT  EA  +AQEN L F+ETSA T  +V + F + A+++
Sbjct: 133 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 101/161 (62%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GK+ ++ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   ++VYDITN+ SF+  + W++ ++   + ++   + GNK D+ D R
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
           +V+ E  +  A + G+ FMETSAK   NV + F+ +A+ + 
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 101/161 (62%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GK+ ++ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   ++VYDITN+ SF+  + W++ ++   + ++   + GNK D+ D R
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
           +V+ E  +  A + G+ FMETSAK   NV + F+ +A+ + 
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 102/160 (63%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAG ER
Sbjct: 10  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R
Sbjct: 70  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +VT  EA  +AQEN L F+ETSA T  +V + F + A+++
Sbjct: 130 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+++GD G GKSSL+LRF    F     +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRG    I+VYD+T+  SF   K+W+ E+  Q   ++   L GNK D  + +
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERK 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
            V  E+A  +A + G+   ETSAK   NV ++F  I + + R + 
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK 174

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 16/209 (7%)
Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
           WDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA- 177
           + GNK D L+ R+V  + AQA+   +N + + ETSAK A NV   F  IA+   + +   
Sbjct: 122 VLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 178 ------PNPSGMVLMDRPGERTASASCCS 200
                 P P   + +D+     ASA  CS
Sbjct: 181 ELYNEFPEP---IKLDKNERAKASAESCS 206

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 16/209 (7%)
Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
           WDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA- 177
           + GNK D  + R+V  + AQA+   +N + + ETSAK A NV   F  IA+   + +   
Sbjct: 122 VLGNKID-FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 178 ------PNPSGMVLMDRPGERTASASCCS 200
                 P P   + +D+     ASA  CS
Sbjct: 181 ELYNEFPEP---IKLDKNDRAKASAESCS 206

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDA 130
           + +L P YYRGA   I+VYD+T + +F +   W+ EL+     N +V  L GNK D  + 
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KEN 135
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V   E   +A+++   F+E SAKT   V   F E+ +++
Sbjct: 136 REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 16/209 (7%)
Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
           WDTAG ER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    
Sbjct: 62  WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA- 177
           + GNK D L+ R+V  + AQA+   +N + + ETSAK A NV   F  IA+   + +   
Sbjct: 122 VLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 178 ------PNPSGMVLMDRPGERTASASCCS 200
                 P P   + +D+     ASA  CS
Sbjct: 181 ELYNEFPEP---IKLDKNDRAKASAESCS 206

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMA 119
           WDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTATNVNDIFYEIAK 169
           + GNK D L+ R+V  + AQA+   +N + + ETSAK A NV   F  IA+
Sbjct: 122 VLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  123 bits (309), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 104/172 (60%), Gaps = 12/172 (6%)
Query: 7   KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWD 65
           KNI  K+++LGD G GK+SL+ R+V  ++ +  ++TIGA F ++ + V+ D     ++WD
Sbjct: 6   KNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWD 64
Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN----MVMALA 121
           TAGQER+ SL   +YRGA   ++VYD+TN +SFE  K W  E     N N        + 
Sbjct: 65  TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124
Query: 122 GNKADLLDARKVTAEE-AQAYAQENG---LFFMETSAKTATNVNDIFYEIAK 169
           GNK D  +++K+ +E+ AQ  A+  G   LF   TSAK A NV+  F EIA+
Sbjct: 125 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAFEEIAR 174

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 8   NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
           +   +++++G  G GK+SL+ RF    F E  +ST+G  F  +T+ +    ++ +IWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
           GQER++S+   YYR A   I+VYDIT + +F+   KW++ +    + +  + L GNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 128 LDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIA 168
              R++T ++ + +AQ+  G+ F E SAK   NV++IF ++ 
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 185

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 87/153 (56%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+G+   GK+S + R+    F     ST+G  F  +T+  +D  +K +IWDTAGQER
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA   +++YDI NQ SF   + W  +++     N  + L GNK DL D R
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
            V AE+ +  A + G  F E SAK   NV  +F
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 86/153 (56%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQER
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
            V++E  +  A   G  F E SAK   NV   F
Sbjct: 127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 75/115 (65%)
Query: 13  LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72
           L+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73  HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
            ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 7   KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
           K++  K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDT
Sbjct: 4   KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAG 122
           AGQER+ SL   +YRGA   ++ + + ++ SFE    W +E       +   +    + G
Sbjct: 64  AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 123 NKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPRVQ 175
           NK D  D R+VT EEAQ +  ENG + ++ETSAK  TNV   F E  +++  V+
Sbjct: 124 NKVDKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVE 176

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V++G+   GKSS++ R+ KG F +  + TIG  F  + + VND  V+  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA A ++V+  T++ SFE    W +++ A+   ++  AL  NK DLLD  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170
            +  EEA+  A+   L F  TS K   NV+++F  +A++
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 90/160 (56%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GN +   KL+++G+   GK+S + R+    F     ST+G  F  +T+  ++  VK +IW
Sbjct: 18  GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK
Sbjct: 78  DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
            D+ + R V  E+ Q  A++ G  F E SAK   +V   F
Sbjct: 138 CDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER
Sbjct: 13  KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
           + SL   +YRG+   ++ + + +  SF+    W +E       +   +    + GNK D+
Sbjct: 73  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI 132
Query: 128 LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 171
            + R+V+ EEAQA+ ++NG + + ETSAK +TNV   F E  +R+
Sbjct: 133 KE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 83/153 (54%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAG ER
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA   I+ YDITN+ SF   + W  +++     N  + L GNK D  D R
Sbjct: 70  YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
            V++E  +  A   G  F E SAK   NV   F
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER
Sbjct: 11  KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
           + SL   +YRG+   ++ + + +  SF+    W +E       +   +    + GNK D+
Sbjct: 71  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 130
Query: 128 LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 171
            + R+V+ EEAQA+ ++NG + + ETSAK ATNV   F E  +R+
Sbjct: 131 SE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
           + SL   +YRG+   ++ + + +  SF+    W +E       +   +    + GNK D+
Sbjct: 69  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128
Query: 128 LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 171
            + R+V+ EEAQA+ ++NG + + ETSAK ATNV   F E  +R+
Sbjct: 129 SE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           +   G+++   K++++GD   GK+ L  RF  G+F +  E+TIG  F  + + ++   +K
Sbjct: 11  LVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK 70
Query: 61  FEIWDTAGQERYH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-M 118
            ++WDTAGQER+  S+   YYR   A + VYD+TN ASF     W++E +     N +  
Sbjct: 71  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 119 ALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN---VNDIFYEIAKRL 171
            L GNK DL  A +V  + AQ +A  + +   ETSAK   +   V  IF  +A +L
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++GD   GK+ L  RF  G+F +  E+TIG  F  + + ++   +K ++WDTAGQER
Sbjct: 31  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72  YH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129
           +  S+   YYR   A + VYD TN ASF     W++E +     N +   L GNK DL  
Sbjct: 91  FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 150
Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATN---VNDIFYEIAKRL 171
           A +V  + AQ +A  +     ETSAK   +   V  IF  +A +L
Sbjct: 151 AIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL GD   GKSS ++R  K +F E   +T+G  F  +TL V+      ++WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA- 130
           + S+A  Y+R A   +++YD+T + SF   ++WV  ++   +  + + L GNKAD+ D  
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 131 -----RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
                + V     +  A   G  F ETSAK  +N+ +    +A+ + +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG VG GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQ 65
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D 
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  E+ Q  A++ N   F+E+SAK+  NVN+IFY++ +++ R
Sbjct: 126 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE+Y  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  E+ Q  A++ N   F+E+SAK+  NVN+IFY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  106 bits (265), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 15/170 (8%)
Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA------ 57
           +G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +  N        
Sbjct: 19  SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 58  ----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG- 112
                V  ++WDTAGQER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA   
Sbjct: 79  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 113 --NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
             NP++V  L GNKADL D R+V   +A+  A + G+ + ETSA T  NV
Sbjct: 139 CENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 186

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 19/188 (10%)
Query: 3   TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN------- 55
           + G+ +   K + LGD G GK+S++ ++  G+F     +T+G  F  + +          
Sbjct: 4   SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 56  ---DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
                 +  ++WDTAG ER+ SL   ++R A   ++++D+TN+ SF   + W+ +LQ   
Sbjct: 64  VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND----IFY 165
              NP++V  L GNK+DL D R V  EEA+  A++ G+ + ETSA   TN++     +  
Sbjct: 124 YSENPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
Query: 166 EIAKRLPR 173
            I KR+ R
Sbjct: 182 LIMKRMER 189

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +    T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +    T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE++  L   YY  A  AII +D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 3   TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
           T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +  +       
Sbjct: 4   TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58  -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
                 V  ++WDTAG ER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA  
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND------- 162
              NP++V  L GNKADL D R+V   +A+  A++ G+ + ETSA T  NV         
Sbjct: 124 YCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 163 -IFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASC 198
            I   + K + + Q     +G       GE+ A   C
Sbjct: 182 LIMKRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKC 218

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 15/171 (8%)
Query: 3   TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
           T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +  +       
Sbjct: 4   TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58  -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
                 V  ++WDTAG ER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA  
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
              NP++V  L GNKADL D R+V   +A+  A++ G+ + ETSA T  NV
Sbjct: 124 YCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  E+ Q  A++     F+E+SAK+  NVN+IFY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
           A  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
            +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++FV+G F++  + TI  ++  Q + V+      EI DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  E+ Q  A++     F+E+SAK+  NVN+IFY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 3   TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
           T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +  +       
Sbjct: 4   TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58  -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
                 V  ++WDTAG ER+ SL   ++R A   ++ +D+T+Q SF   + W  +LQA  
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
              NP++V  L GNKADL D R+V   +A+  A++ G+ + ETSA T  NV
Sbjct: 124 YCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 3   TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----- 57
           T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +  +       
Sbjct: 4   TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 58  -----TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG 112
                 V  ++WDTAG ER+ SL   ++R A   ++ +D+T+Q SF   + W  +LQA  
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Query: 113 ---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 160
              NP++V  L GNKADL D R+V   +A+  A++ G+ + ETSA T  NV
Sbjct: 124 YCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K
Sbjct: 3   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAG E++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 121
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 122 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAG E++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L
Sbjct: 61  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVL 119
Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D 
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ EEA+  A++  + ++ETSAKT  NV+ +F+++ + +
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128
           QE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ 
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 120
Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 121 D-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D 
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ EEA+  A++  + ++ETSAKT  NV+ +F+++ + +
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ EEA+  A++  + ++ETSAKT  NV+ +F+++ + +
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
           A  G   +  KLVL+GD G GK++ V R + G+  +   +T+G          N   +KF
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
            +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLC 125
Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK DL  +
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PS 123
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  ++AQ  A+  G+ F+ETSAKT   V+D FY + + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ EEA+  A +  + ++ETSAKT  NV+ +F+++ + +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +W
Sbjct: 1   GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAG E++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK
Sbjct: 61  DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNK 119
Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 120 VDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK+D L +
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD-LPS 123
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  ++AQ  A+  G+ F+ETSAKT   V+D FY + + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  A
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A 122
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R V + +AQ  A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  A
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A 122
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R V + +AQ  A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  A
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A 122
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R V + +AQ  A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Query: 7   KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
           K+   KL + G  G GKS+LV+RF+  +FI   + T+ + +  Q   ++D  V  EI DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKA 125
           AGQE        + R     ++VYDIT++ SFE        L     P N+ + L GNKA
Sbjct: 84  AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEIAKRLPR 173
           DL  +R+V+ EE +  A E    F E SA T   N+ +IFYE+ + + R
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ EEA+  A++  + ++ETSAKT  NV+ +F+++ + +
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 92/161 (57%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-G 122
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R V + +AQ  A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVL+GD G GK++ V R + G+F +   +TIG      +   N   +KF++WDTAG E+
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           +  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ + R
Sbjct: 74  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 131
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           KV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 132 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLD 129
           Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL +
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
            R+V  EEA++ A+E G+ ++ETSAKT  NV+ +F+++ + +   + + N
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 177

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLD 129
           Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL +
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
            R+V  EEA++ A+E G+ ++ETSAKT  NV+ +F+++ + +   + + N
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 173

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVL+GD G GK++ V R + G+F +   +TIG      +   N   +KF++WDTAG E+
Sbjct: 7   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           +  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ + R
Sbjct: 67  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 124
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           KV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 125 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 163

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVL+GD G GK++ V R + G+F +   +TIG      +   N   +KF++WDTAG E+
Sbjct: 6   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           +  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ + R
Sbjct: 66  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-R 123
Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           KV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct: 124 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 162

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 1/164 (0%)
Query: 7   KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWD 65
           + +  K+ L+GD G GK++ + R + G+F +   +T+GA     T   +   V KF +WD
Sbjct: 8   RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
           TAGQE+   L  +YY GA+ AI+ +D+T++ + +   +WV+E QA       + +  NK 
Sbjct: 68  TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           D+ + +K++ +      +     + E SAKTA N    F  +A+
Sbjct: 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++F++  F+   + TI  ++  Q + ++D   + +I DTAGQE + ++   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83  AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               ++V+ +T++ SFE   K+ ++ L+ +      M L GNKADL   R+VT EE Q  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           A++  + +ME SAK   NV+  F+E+ + + + Q
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQE 70
           K+V+LGD  +GK+SL   F +  F +  + TIG  FF + + +  +  V  +IWD  GQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADL 127
               +   Y  GA   ++VYDITN  SFE  + W   V+++  +     ++AL GNK DL
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
              R +  E+   + QENG      SAKT  +V   F ++A  +  ++
Sbjct: 128 EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GDV  GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 5   IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 63
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 64  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 122
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 177

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSG 182
           A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG 178

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G+  I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +W
Sbjct: 4   GSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALW 62
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGN 123
           DTAGQE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GN
Sbjct: 63  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGN 121
Query: 124 KADL------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
           K DL            +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 122 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 180

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83  AAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               I+VY + NQ SF+  K    Q ++ +    + + L GNK DL   R+V++ E +A 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+E G  FMETSAK+ T V+++F EI +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 178

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 178

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G   I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +W
Sbjct: 1   GMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALW 59
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGN 123
           DTAGQE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GN
Sbjct: 60  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGN 118
Query: 124 KADL------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
           K DL            +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 119 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 177

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 123
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 178

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F+E  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 65
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 66  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 124
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 179

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 3/158 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++ + G  G GKSSLVLRFVKG F E    T+   +  Q ++ + +    +I DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQ 63
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMV-MALAGNKADLLD 129
           + ++  +      A I+VY IT++ S E  K   +++ + +G+   + + L GNK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
           +R+V + EA+A A+     FMETSAK   NV ++F E+
Sbjct: 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE    + ++++  + + ++ M L GNK+D L +R V  ++AQ  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD-LPSRTVDTKQAQDL 134
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           A+  G+ F+ETSAKT   V+D FY + + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE    + ++++  + + ++ M L GNK+D L +R V  ++AQ  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD-LPSRTVDTKQAQDL 134
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           A+  G+ F+ETSAKT   V+D FY + + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 140
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK+DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAK 169
           A+  G+ ++ETSAKT   V D FY + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + +I  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 139
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V +GD   GK+ +++ +   +F       I   F  FS  +AV+   V   +WDTAGQ
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ YRGA   ++ + + ++AS+E   KKW+ EL+ +  PN+ + L G K DL 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLR 126
Query: 129 DARKVTAEEAQAYAQENG---------LFFMETSAKTATNVNDIF---YEIAKRLPRVQP 176
           D +   A+         G           ++E S+KT  NV  +F    ++  + PR + 
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186
Query: 177 AP 178
            P
Sbjct: 187 VP 188

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GN+ DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG E Y ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE    + ++++  + + ++ M L GNK DL  +R V  ++AQ  
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           A+  G+ F+ETSAKT   V+D FY + + + +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V+LG    GK+SL  +FV+G+F E  + T+   + S+ + +        + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDA 130
           Y  L   +  G    ++VY +T+  SF+  +   Q+L +  G   + + L GNKADL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           R+V A E +  A+  G  FME+SA+       IF ++ + + RV+
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DT GQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + +I  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DT GQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V +GD   GK+ L++ +    F      T+   F S  + VN ATV   +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           Y+ L P+ YRGA   I+ + + ++AS+E  +KKW+ EL+    P + + L G K DL D 
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD 127
Query: 131 RK----------VTAEEAQAYAQENGL-FFMETSAKTATNVNDIF 164
           ++          +T  + +   +  G   ++E S+K+  NV  +F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDL 141
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V +EE +  A     F ++E SAKT   V ++F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 141
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V +EE +  A     F ++E SAKT   V ++F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG+E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++   K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++   K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 60
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 119
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 174

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++   K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 60
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 119
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 174

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++   K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++   K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++      +I DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG E Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V +GD   GK+ +++ +    F      T+   F S  + V+  TV   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           Y+ L P+ YRGA   I+ + + ++AS+E  AKKW+ EL+    P + + L G K DL D 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
Query: 131 RK----------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIF 164
           ++          +T  + +   +  G   ++E S+KT  NV  +F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GDV  GK+ L++ F K QF      T+   + +  + V+   V+  +WDTAG
Sbjct: 4   IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y    P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 63  QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V   E +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 176

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTA QE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTA QE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE   ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SFE   ++ ++++  + + ++ M L GNK DL  AR V + +AQ  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ ++ETSAKT   V D FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V +GD   GK+ +++ +    F      T+   F S  + V+ +TV   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           Y+ L P+ YRGA   ++ + + ++AS+E   KKW+ EL+    P + + L G K DL D 
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRDD 125
Query: 131 RK-----------VTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
           ++            TA+  +       + ++E S+KT  NV  +F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ +LG    GKSSL ++FV+GQF++  + TI   F ++ + VN      ++ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDA 130
           Y      Y       I+VY +T+  SFE  K    +L    G   + + L GNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
           R ++ EE +A A+     F+E+SAK      D+F  I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++   K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 65
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
            E Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 66  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 124
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V  EE +  A   G F +ME SAKT   V ++F E+A R
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 179

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ +LG    GKSSL ++FV+GQF++  + TI   F ++ + VN      ++ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
           Y      Y       I+VY +T+  SFE  K    + L   G   + + L GNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
           R ++ EE +A A+     F+E+SAK      D+F  I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++   K QF E    T+   + +  + V+   V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E   +KW  E++    PN+ + L GNK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
Query: 128 ------------LDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKR 170
                       +    V +EE +  A     F ++E SAKT   V ++F E+A R
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 176

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 2/167 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ +LG    GKSSL ++FV+GQF++  + TI   F ++ + VN      ++ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
           Y      Y       I+VY +T+  SFE  K    + L   G   + + L GNK DL   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA 177
           R ++ EE +A A+     F+E+SAK      D+F  I     ++  A
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKIDGA 168

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++F +  F++  + TI  ++   T   N   +  ++ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83  AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RKVT ++ +  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLFFMETSAKT-ATNVNDIFYEIAK 169
           A +  + ++ETSAK    NV+  F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ +LG    GKSSL ++FV+GQF++  + TI   F ++ + VN      ++ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDA 130
           Y      Y       I+VY +T+  SFE  K    + L   G   + + L GNK DL   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
           R ++ EE +A A+     F+E+SAK      D+F  I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
           + K+VL+GD G GK+SL++ F  G F E    T+   +    L V    V   IWDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQ 92
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLL 128
           + Y  L P++Y  A+  ++ +D+T+  SF+    +W  E+       + + + G K DL 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLR 151
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAK 169
             +             VT    Q  A+  G + ++E SA+   NV+ +F E A+
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 83  AAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               + V+ I N  SF     + ++++  + + ++ M L GNK DL   R V  ++A   
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           A+  G+ F+ETSAKT   V D FY + + +
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++F +  F+   + TI  ++   T  +++     ++ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 83  AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RKVT ++ +  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLFFMETSAKTAT-NVNDIFYEIAK 169
           A +  + ++ETSAK    NV+  F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++F +  F++  + TI  ++   T   N   +  ++ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83  AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RKVT ++ +  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLFFMETSAKT-ATNVNDIFYEIAK 169
           A +  + ++ETSAK    NV+  F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++F +  F+   + TI  ++   T  +++     ++ DTAGQE + ++   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 83  AAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RKVT ++ +  
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 142 AQENGLFFMETSAKT-ATNVNDIFYEIAK 169
           A +  + ++ETSAK    NV+  F+++ +
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KS+L ++F++  F+   + TI  ++ ++  +V+    + +I DTAGQE + ++   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83  AAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY 141
               ++V+ I ++ SF E  K + Q L+ +   +  + L GNKADL   R+V   EA A+
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 142 AQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
              + + + E SAK   NV++ F ++ + + + Q
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           M+     +I  KLV++GD   GK+ L++   KGQF E    T+   + +  + V+   V+
Sbjct: 1   MSQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVE 59
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQ--AQGNPNMV 117
             +WDTAGQE Y  L P+ Y  +   +I + I    S E  + KW+ E+    QG P   
Sbjct: 60  LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP--- 116
Query: 118 MALAGNKADLLD------------ARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIF 164
           + L G K DL +             + VT++E Q+ A + G   + E SAKT   V ++F
Sbjct: 117 IILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K +F E    T+   + +  + V+   V+  +WDTAG
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + + +  S E   +KWV E++    PN+ + L  NK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDL 141
Query: 128 LDARKVTAEEAQAYAQ----ENG---------LFFMETSAKTATNVNDIFYEIAKR 170
                V  E A+   +    ++G           ++E SAKT   V ++F E A R
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATR 196

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 23  KSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 82
           KSSLVLRFVKG F +    TI   +  Q ++ + +    +I DT G  ++ ++  +    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83  AAAAIIVYDITNQASFERAKKWVQEL-QAQGN-PNMVMALAGNKADLLDARKVTAEEAQA 140
             A I+V+ +T++ S E      + + Q +G+  ++ + L GNK D    R+V   EAQA
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-QREVDTREAQA 138
Query: 141 YAQENGLFFMETSAKTATNVNDIFYEI 167
            AQE    FMETSAK   NV ++F E+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 9/176 (5%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VK 60
           G+ N   ++VL+G+ G GKS+L   F      ++     +G   + +TL V+  +   + 
Sbjct: 1   GSGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 60
Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMA 119
            ++W+  G+  +  L     +   A +IVY IT++ASFE+A +  +Q  +A+   ++ + 
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 120 LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPR 173
           L GNK+DL+  R+V+  E +A A      F+ETSA    NV ++F  I +  RL R
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 174

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y     ++I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 5   GNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKF 61
           G+K + A K V++GD   GK+ L++ +    F       I   F  +S  + V+   V  
Sbjct: 1   GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNL 57
Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMAL 120
            +WDTAGQE Y  L P+ Y     ++I + + + ASFE  + KW  E++    PN  + L
Sbjct: 58  GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL 116
Query: 121 AGNKADLLDAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
            G K DL D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 117 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 175

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y     ++I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y     ++I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--DAT-VKFEIWDTAG 68
           ++VLLGD G GK+SL   F   Q  +  E  +G   + +TL V+  D T V  + W+   
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADL 127
            ++  S      +G +A +IVY I ++ SFE A +   +L+     + V + L GNKADL
Sbjct: 65  LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
              R+V+ EE +A A      F+ETSA    NV ++F
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 9/179 (5%)
Query: 8   NINAKLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEI 63
           N   ++VL+G+ G GKS+L   F      ++     +G   + +TL V+  +   +  ++
Sbjct: 35  NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAG 122
           W+  G+  +  L     +   A +IVY IT++ASFE+A +  +Q  +A+   ++ + L G
Sbjct: 95  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 123 NKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPRVQPAPN 179
           NK+DL+  R+V+  E +A A      F+ETSA    NV ++F  I +  RL R     N
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKN 211

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
           N+N+  K+V++GD   GK++L+  F K  F E    T+   + + +  ++   ++  +WD
Sbjct: 19  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 77
Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNK 124
           T+G   Y ++ P+ Y  + A +I +DI+   + +   KKW  E+Q +  PN  M L G K
Sbjct: 78  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCK 136
Query: 125 ADL 127
           +DL
Sbjct: 137 SDL 139

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
           N+N+  K+V++GD   GK++L+  F K  F E    T+   + + +  ++   ++  +WD
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 82
Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNK 124
           T+G   Y ++ P+ Y  + A +I +DI+   + +   KKW  E+Q +  PN  M L G K
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCK 141
Query: 125 ADL 127
           +DL
Sbjct: 142 SDL 144

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
            N+N+  K+V++GD   GK++L+  F K  F E    T+   + + +  ++   ++  +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGN 123
           DT+G   Y ++ P+ Y  + A +I +DI+   + +   KKW  E+Q +  PN  M L G 
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGC 119
Query: 124 KADL 127
           K+DL
Sbjct: 120 KSDL 123

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 12  KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
           ++VL+G+ G GKS+L   F      ++     +G   + +TL V+  +   +  ++W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKAD 126
           G+  +  L     +   A +IVY IT++ASFE+A +  +Q  +A+   ++ + L GNK+D
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPRVQPAPNPSGMV 184
           L+  R+V+  E +A A      F+ETSA    NV ++F  I +  RL R     N   + 
Sbjct: 126 LVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLA 185
Query: 185 LMDRP 189
              R 
Sbjct: 186 YQKRK 190

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 12  KLVLLGDVGAGKSSLVLRFVK-GQFIEFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
           ++VL+G+ G GKS+L   F      ++     +G   + +TL V+  +   +  ++W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKAD 126
           G+  +  L     +   A +IVY IT++ASFE+A +  +Q  +A+   ++ + L GNK+D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK--RLPRVQPAPNPSGMV 184
           L+  R+V+  E +A A      F+ETSA    NV ++F  I +  RL R     N   + 
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLA 185
Query: 185 LMDRP 189
              R 
Sbjct: 186 YQKRK 190

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GDV  GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + AS+E  + KW  E++    P+  + L G K DL 
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 126
Query: 129 DARK------------VTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E + + ++E SA T   +  +F E
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 2   ATTGNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDAT 58
            ++G+  + A K V++GD   GK+ L++ +    F       I   F  +S  + V+   
Sbjct: 1   GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKP 57
Query: 59  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMV 117
           V   +WDTAGQE Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  
Sbjct: 58  VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTP 116
Query: 118 MALAGNKADLLDARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIF 164
           + L G K DL D +             +T  +  A A+E G + ++E SA T   +  +F
Sbjct: 117 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
Query: 165 YE 166
            E
Sbjct: 177 DE 178

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G   +  K V++GD   GK+ L++ +    F E    T+    ++ ++ V        ++
Sbjct: 13  GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLY 71
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGN 123
           DTAGQE Y  L P+ Y      +I + + N ASF+  K +WV EL+    PN+   L G 
Sbjct: 72  DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGT 130
Query: 124 KADLLDARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           + DL D  K            +  E+ Q  A+E G   ++E SA T   +  +F E
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 22/171 (12%)
Query: 11  AKLVLLGDVGAGKSSLVLRFV-KGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
            K VL+GD   GK+SLV+ +   G   E+    I  AF  FS  ++V+   V+ ++ DTA
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEY----IPTAFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKAD 126
           GQ+ +  L P+ Y      ++ + + + +SF+  ++KWV E++    P   + L G ++D
Sbjct: 77  GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSD 135
Query: 127 L---------LDARK---VTAEEAQAYAQE-NGLFFMETSAKTATNVNDIF 164
           L         LD  K   V  E A+  A+E     ++E SA T  N+ ++F
Sbjct: 136 LREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 139
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GDV  GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + AS+E  + KW  E++    P+  + L G K DL 
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 127
Query: 129 DARK------------VTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E + + ++E SA T   +  +F E
Sbjct: 128 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAF---SGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 130
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K+V++GD   GK+ L+L F KG   E   + +   F  FS  +   +      +WDTAGQ
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKG---EIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y  +   ++ + + N+ SF+  + KW  E++   +    + L G K DL 
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140
Query: 129 D--ARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPRVQPAP 178
              +  VT +E     Q+ G   ++E S+     +N++F +    +   +P P
Sbjct: 141 KDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPVP 193

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAG 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 12  KLVLLGDVGAGKSSLVLRF----VKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWD 65
           K V++GD   GK+ L++ +    + G++I          F  +S  + V+   V   +WD
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIP-------TVFDNYSANVMVDGKPVNLGLWD 84
Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNK 124
           TAGQE Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K
Sbjct: 85  TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTK 143
Query: 125 ADLLDARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
            DL D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    P+  + L G K DL 
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPHTPILLVGTKLDLR 121
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAG 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    P+  + L G K DL 
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLR 121
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    P+  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLR 120
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +       F    I   F  +S  + V+   V   +WDTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTN---AFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + AS+E  + KW  E++    P+  + L G K DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLR 120
Query: 129 DAR------------KVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           D +             +T  +  A A+E + + ++E SA T   +  +F E  + +   Q
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180
Query: 176 P 176
           P
Sbjct: 181 P 181

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAG 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 123
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 8   NINAKLVLLGDVGAGKSSLVLRFV-KG-QFIEFQESTIGAAFFSQTLAVNDATVKFEIW- 64
            +  K+ ++G+   GKS+L+  F  KG +F++    T G       + + D TV  E++ 
Sbjct: 18  TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 65  -DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN----MVMA 119
            DTAG + Y      Y+ G   AI+V+D+++  SFE  K W  EL     P+    +   
Sbjct: 78  LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAV 136
Query: 120 LAGNKADLLDAR-KVTAEEAQAYAQENGLFFMETSA 154
           L  NK DL   R +V  + AQ +A  N L F + SA
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAG 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K+V++GD   GK+ L+L F KG   E   + +   F  FS  +   +      +WDTAGQ
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKG---EIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y  +   ++ + + N+ SF+  + KW  E++   +    + L G K DL 
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 139
Query: 129 D--ARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIF 164
              +  VT +E     Q+ G   ++E S+     +N++F
Sbjct: 140 KDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GDV  GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAG 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASF   + KW  E++    PN  + L G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLG  G GKS+L   F  G   +  E+      + +++ V+       ++D   Q+ 
Sbjct: 4   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
              L         A +IVY +T++ SFE+A +  VQ  +A+   ++ + L GNK+DL+ +
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ +E +A A      F+ETSA    NV  +F  + +++
Sbjct: 122 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLG  G GKS+L   F  G   +  E+      + +++ V+       ++D   Q+ 
Sbjct: 9   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
              L         A +IVY +T++ SFE+A +  VQ  +A+   ++ + L GNK+DL+ +
Sbjct: 67  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ +E +A A      F+ETSA    NV  +F  + +++
Sbjct: 127 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLG  G GKS+L   F  G   +  E+      + +++ V+       ++D   Q+ 
Sbjct: 9   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDA 130
              L         A +IVY +T++ SFE+A +  VQ  +A+   ++ + L GNK+DL+ +
Sbjct: 67  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 126
Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ +E +A A      F+ETSA    NV  +F  + +++
Sbjct: 127 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAG 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASF   + KW  E++    PN  + L G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAG 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      +I + + + ASF   + KW  E++    PN  + L G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 129 DARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYE 166
           D +             +T  +  A A+E G + ++E SA T   +  +F E
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
             KLVL+GDV  GK++++    K  +    E+ +   F  ++  L   +  V+  +WDT+
Sbjct: 11  RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 67
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKAD 126
           G   Y ++ P+ Y  + A ++ +DI+   + + A KKW  E+     P+  + L G K D
Sbjct: 68  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 126
Query: 127 L---------LDARK---VTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEIAKRLPR 173
           L         L  +K   ++ E+  A A++ G   ++E SA T+       +  A  L  
Sbjct: 127 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186
Query: 174 VQPAPNP 180
            +P+P P
Sbjct: 187 NKPSPLP 193

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
             KLVL+GDV  GK++++    K  + E    T+   + +  L   +  V+  +WDT+G 
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGS 85
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADL- 127
             Y ++ P+ Y  + A ++ +DI+   + + A KKW  E+     P+  + L G K DL 
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDLR 144
Query: 128 --------LDARK---VTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEIAKRLPRVQ 175
                   L  +K   ++ E+  A A++ G   ++E SA T+       +  A  L   +
Sbjct: 145 TDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204
Query: 176 PAPNP 180
           P+P P
Sbjct: 205 PSPLP 209

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTA 67
             KLVL+GDV  GK++++    K  +    E+ +   F  ++  L   +  V+  +WDT+
Sbjct: 10  RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 66
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKAD 126
           G   Y ++ P+ Y  + A ++ +DI+   + + A KKW  E+     P+  + L G K D
Sbjct: 67  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 125
Query: 127 L---------LDARK---VTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEIAKRLPR 173
           L         L  +K   ++ E+  A A++ G   ++E SA T+       +  A  L  
Sbjct: 126 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185
Query: 174 VQPAPNP 180
            +P+P P
Sbjct: 186 NKPSPLP 192

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 5   GNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDAT 58
           G+K I+A    K V++GD   GK+ L++ +   +F       +   F  ++ T+ +    
Sbjct: 1   GSKIISAMQTIKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEP 57
Query: 59  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMV 117
               ++DTAGQE Y  L P+ Y      ++ + + + +SFE  K KWV E+     P   
Sbjct: 58  YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTP 116
Query: 118 MALAGNKADLLD------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIF 164
             L G + DL D             + +T E A+  A++   + ++E SA T   + ++F
Sbjct: 117 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
Query: 165 YE 166
            E
Sbjct: 177 DE 178

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       + A F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFE 62
           G+     K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        
Sbjct: 1   GSHMQTIKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLG 57
Query: 63  IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALA 121
           ++DTAGQE Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L 
Sbjct: 58  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLV 116
Query: 122 GNKADLLD------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           G + DL D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 122
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 123 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 121
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 122 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 172

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFE 62
           G+     K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        
Sbjct: 1   GSHMQTIKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLG 57
Query: 63  IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALA 121
           ++DTAGQE Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L 
Sbjct: 58  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLV 116
Query: 122 GNKADLLD------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           G + DL D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 130
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 131 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 181

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 39/190 (20%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +    F       I   F  +S  + V+   V   +WDTAGQ
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70  ERYHSLAPMYY--------------RG-----AAAAIIVYDITNQASFERAK-KWVQELQ 109
           E Y  L P+ Y              RG     A   +I + + + ASFE  + KW  E++
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 110 AQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENG-LFFMETSAKT 156
               PN  + L G K DL D +             +T  +  A A+E G + ++E SA T
Sbjct: 124 HH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 157 ATNVNDIFYE 166
              +  +F E
Sbjct: 183 QRGLKTVFDE 192

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V++GD   GK+ L++ +   +F      T+   + + T+ +        ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 70
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD- 129
           Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 129
Query: 130 -----------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
                       + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V++GD   GK+ L++ +   +F      T+   + + T+ +        ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 67
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD- 129
           Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 130 -----------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
                       + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 122
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 123 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        + DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAG 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 124
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +        +   F  ++ T+ +        ++DTAGQ
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKL---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V++GD   GK+ L++ +   +F       +   F  ++ T+ +        ++DTAG 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y      ++ + + + +SFE  K KWV E+     P     L G + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLR 120
Query: 129 D------------ARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYE 166
           D             + +T E A+  A++   + ++E SA T   + ++F E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L L+G   +GK++ V     GQF E    T+G  F  + +   + T+K  +WD  GQ R
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 79
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
           + S+   Y RG +A + + D  +Q   E +K  +  L    Q QG P +V+   GNK DL
Sbjct: 80  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKRDL 136
Query: 128 ---LDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161
              LD +++  +   +  Q+  +     S K   N++
Sbjct: 137 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L L+G   +GK++ V     GQF E    T+G  F  + +   + T+K  +WD  GQ R
Sbjct: 33  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 88
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
           + S+   Y RG +A + + D  +Q   E +K  +  L    Q QG P +V+   GNK DL
Sbjct: 89  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKRDL 145
Query: 128 ---LDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161
              LD +++  +   +  Q+  +     S K   N++
Sbjct: 146 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 182

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 15/183 (8%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---F 61
           G K+   K++L+G+ G GKS+L   F   Q     E       + + + V+   V    +
Sbjct: 18  GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 62  EIW---DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NM 116
           +IW   D  G  R H L         A +IV+ +T++ SF +  + +  L+A G P  ++
Sbjct: 78  DIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDL 131
Query: 117 VMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
            + L GNK+DL  +R+V+ EE +  A       +ETSA    N  ++F E A R  R++ 
Sbjct: 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF-EGAVRQIRLRR 190
Query: 177 APN 179
             N
Sbjct: 191 GRN 193

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L L+G   +GK++ V     GQF E    T+G  F  + +   + T+K  IWD  GQ R
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQPR 79
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADL 127
           + S+   Y RG  A + + D  ++   E ++  +  L    Q QG P +V+   GNK DL
Sbjct: 80  FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKRDL 136
Query: 128 ---LDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 161
              LD +++  +   +  Q+  +     S K   N++
Sbjct: 137 PNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNID 173

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW---D 65
           K++LLG+ G GKS+L   F   Q     E       + + + V+   V    ++IW   D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGN 123
             G  + H L         A +IV+ +T++ SF +  + +  L+A G P  ++ + L GN
Sbjct: 74  AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGN 127
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
           K+DL  +R+V+ EE +  A       +ETSA    N  ++F
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK---FEIW---D 65
           K++L+G+ G GKS+L   F   Q     E       + + + V+   V    ++IW   D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVMALAGN 123
             G  + H L         A +IV+ +T++ SF +  + +  L+A G P  ++ + L GN
Sbjct: 64  AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGN 117
Query: 124 KADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 164
           K+DL  +R+V+ EE +  A       +ETSA    N  ++F
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 12/157 (7%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  +++++G  GAGK++++ +   G+ I    +TI    F+    V    + F +W
Sbjct: 14  GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-TVQYKNISFTVW 66
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
           D  GQ+R  SL   YYR     I V D  +++    A++ +Q +  +    N V  +  N
Sbjct: 67  DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126
Query: 124 KADL---LDARKVTAEEAQAYAQENGLFFMETSAKTA 157
           K DL   + A ++T E+   ++  N  +F++++  T+
Sbjct: 127 KQDLPEAMSAAEIT-EKLGLHSIRNRPWFIQSTCATS 162

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G  N   ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +W
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 371
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
           D  GQ++   L   YY G    I V D  ++   + A+   QEL    N     + ++ +
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 428
Query: 121 AGNKADLLDARK 132
             NK DL DA K
Sbjct: 429 FANKQDLPDAMK 440

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +W
Sbjct: 9   GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 61
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
           D  GQ++   L   YY G    I V D  ++   + A+   QEL    N     + ++ +
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 118
Query: 121 AGNKADLLDARK 132
             NK DL DA K
Sbjct: 119 FANKQDLPDAMK 130

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +W
Sbjct: 10  GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVW 62
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
           D  GQ++   L   YY G    I V D  ++   + A+   QEL    N     + ++ +
Sbjct: 63  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AGNKADLLDARK 132
             NK DL DA K
Sbjct: 120 FANKQDLPDAMK 131

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVNDATVK---FEIWDT 66
           KL ++G+ G+GK++L+ +  K +  +   Q +T+G       + + D   +     +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
           AG+E ++S  P +    A  + VYD++  QA  +  K W+  ++A+ + + V+ L G   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 126 DLLDARKVTA 135
           D+ D ++  A
Sbjct: 123 DVSDEKQRKA 132

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           +   L +LG  GAGKS+L ++F+  +FI   +  +   + S+   V+   V   + DTA 
Sbjct: 20  LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTAD 78
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ--ELQAQGNPNMVMALA-GNKA 125
            +   +    Y   A A ++VY + ++ SF+ +  +++   L A+     + AL  GNK 
Sbjct: 79  LDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137
Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTA-TNVNDIFYEIAKRLPR 173
           D+   R+VT  E  A A   G  F E SA     +V  +F+E  +   R
Sbjct: 138 DMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVNDATVK---FEIWDT 66
           KL ++G+ G+GK++L+ +  K +  +   Q +T+G       + + D   +     +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKA 125
           AG+E ++S  P +    A  + VYD++  QA  +  K W+  ++A+ + + V+ L G   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 126 DLLDARKVTA 135
           D+ D ++  A
Sbjct: 121 DVSDEKQRKA 130

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
              L   YY G    I V D  ++   + A+   QEL    N     + ++ +  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 LDARK 132
            DA K
Sbjct: 114 PDAMK 118

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
              L   YY G    I V D  ++   + A+   QEL    N     + ++ +  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 LDARK 132
            DA K
Sbjct: 114 PDAMK 118

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  +++++G  GAGK++++ +   G+ I    +TI    F+    V    + F +W
Sbjct: 14  GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-TVQYKNISFTVW 66
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
           D  GQ+R  SL   YYR     I V D  +++    A++ +Q +  +    N    +  N
Sbjct: 67  DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 124 KADL---LDARKVTAEEAQAYAQENGLFFMETSAKTA 157
           K DL   + A ++T E+   ++  N  +F++ +  T+
Sbjct: 127 KQDLPEAMSAAEIT-EKLGLHSIRNRPWFIQATCATS 162

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++ LG   AGK++++ +   GQ +    +TI    F+    V    VKF +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSV----TTIPTVGFN-VETVTYKNVKFNVWDVGGQDK 56
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
              L   YY G    I V D  ++   + A+   QEL    N     + ++ +  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 128 LDARK 132
            DA K
Sbjct: 114 PDAXK 118

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +W
Sbjct: 10  GNKEM--RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVE-TVTYKNVKFNVW 62
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMAL 120
           D  G ++   L   YY G    I V D  ++   + A+   QEL    N     + ++ +
Sbjct: 63  DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AGNKADLLDARK 132
             NK DL DA K
Sbjct: 120 FANKQDLPDAMK 131

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G  GAGK++++ +   G+ I    +TI    F+    V    + F +WD  GQ+R
Sbjct: 2   RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-TVQYKNISFTVWDVGGQDR 56
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADL--- 127
             SL   YYR     I V D  +++    A++ +Q +  +    N    +  NK DL   
Sbjct: 57  IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 116
Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTA 157
           + A ++T E+   ++  N  +F++ +  T+
Sbjct: 117 MSAAEIT-EKLGLHSIRNRPWFIQATCATS 145

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  +++++G  GAGK++++ +   G+ I    +TI    F+    V    + F +W
Sbjct: 14  GNKEM--RILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGFNVE-CVQYCNISFTVW 66
Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGN 123
           D  GQ+R  SL   YY      I V D  +++    A++ +Q +  +    N    +  N
Sbjct: 67  DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 124 KADL---LDARKVTAEEAQAYAQENGLFFMETSAKTA 157
           K DL   + A ++T E+   ++  N  +F++ +  T+
Sbjct: 127 KQDLPEAMSAAEIT-EKLGLHSIRNRPWFIQATCATS 162

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           +  ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +WD  G
Sbjct: 1   MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVE-TVTYKNVKFNVWDVGG 55
Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNK 124
            ++   L   YY G    I V D  ++   + A+   QEL    N     + ++ +  NK
Sbjct: 56  LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 112
Query: 125 ADLLDARK 132
            DL DA K
Sbjct: 113 QDLPDAMK 120

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++++LG   AGK++++ +   GQ +    +TI    F+    V    VKF +WD  G ++
Sbjct: 5   RILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVE-TVTYKNVKFNVWDVGGLDK 59
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
              L   YY G    I V D  ++   + A+   QEL    N     + ++ +  NK DL
Sbjct: 60  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 116
Query: 128 LDARK 132
            DA K
Sbjct: 117 PDAMK 121

>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 23/171 (13%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
           +L +LGD  +GKSSL+ RF+ G  Q +E  ES      + + + V+  T    I + AG 
Sbjct: 9   RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ----YKKEMLVDGQTHLVLIREEAG- 63
Query: 70  ERYHSLAP-MYYRGAAAAII-VYDITNQASFE---RAKKWVQELQAQGNPNMVMALAGNK 124
                 AP   + G A A+I V+ + ++ SF+   R    +  L+ +G   + +AL G +
Sbjct: 64  ------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
Query: 125 ADLLDA---RKVTAEEAQAY-AQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            D + A   R V    A+A  A      + ET A    NV+ +F E+A+++
Sbjct: 118 -DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167

>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
           +L +LGD  +GKSSL+ RF+ G  Q +E  ES      + + + V+  T    I + AG 
Sbjct: 9   RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ----YKKEMLVDGQTHLVLIREEAG- 63
Query: 70  ERYHSLAP-MYYRGAAAAII-VYDITNQASFE---RAKKWVQELQAQGNPNMVMALAGNK 124
                 AP   + G A A+I V+ + ++ SF+   R    +  L+ +G   + +AL G +
Sbjct: 64  ------APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
Query: 125 ADLLDARKVTAEEAQAYAQENGL---FFMETSAKTATNVNDIFYEIAKRL 171
             +  +      +A+A A    +    + ET A    NV+ +F E+A+++
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 8   NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 67
           N   ++++LG  GAGK++++ R   G+ +   + TIG  F  +TL+  +  +K  +WD  
Sbjct: 16  NKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSYKN--LKLNVWDLG 70
Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKK----WVQELQAQGNPNMVMALAGN 123
           GQ         YY   AA I V D T++     A K     +QE + Q    +V A   +
Sbjct: 71  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 124 KADLLDARKVTAE 136
           +   L A +V+ E
Sbjct: 131 QPGALSASEVSKE 143

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G   AGK+S++ +   G+ +    +TI    F+    V    + F +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTSILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 73
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
              L   YY+   A I V D  ++     A+   +EL    N     N ++ +  NK DL
Sbjct: 74  IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKHDL 130
Query: 128 LDARKVT--AEEAQAYAQENGLFFMETSAKTATNVNDIFYE 166
             A  ++   E+      +N  ++ +TS   ATN  D  YE
Sbjct: 131 PQAMSISEVTEKLGLQTIKNRKWYCQTSC--ATN-GDGLYE 168

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++++LG  GAGK++++ R   G+ +    +TI    F+    V    +KF++WD  GQ  
Sbjct: 4   RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGFNVE-TVTYKNLKFQVWDLGGQTS 58
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADL 127
                  YY    A I V D  ++     +K + V  L+ +     ++ +  NK D+
Sbjct: 59  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 115

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G   AGK++++ +   G+ +    +TI    F+    V    + F +WD  GQ++
Sbjct: 31  RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNICFTVWDVGGQDK 85
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
              L   Y++     I V D  ++   + +   +Q+ LQ     + V+ +  NK D+ +A
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 131 RKV---TAEEAQAYAQENGLFFMETSAKTATNVND----IFYEIAKR 170
             V   T +    + +    +   T A   T + D    + +E++KR
Sbjct: 146 MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G   AGK++++ +   G+ +    +TI    F+    V    + F +WD  GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFN-VETVEYKNISFTVWDVGGQDK 221
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
              L   Y++     I V D  ++     A++ +  + A+    + V+ +  NK DL +A
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
           + +++++G   AGK++++ +   G+ +    +TI    F+    V    + F +WD  GQ
Sbjct: 17  DVRILMVGLDAAGKTTILYKVKLGEVV----TTIPTIGFNVE-TVEFRNISFTVWDVGGQ 71
Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKA 125
           ++   L   YY      I V D  ++   + A+   +EL    N     + ++ +  NK 
Sbjct: 72  DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR---EELHRMINEEELKDAIILVFANKQ 128
Query: 126 DL---LDARKVTAEEAQAYAQENGLFFMETSA 154
           DL   + A +VT +      +E   F   T A
Sbjct: 129 DLPNAMSAAEVTEKLHLNTIRERNWFIQSTCA 160

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G   AGK++++ +   G+ +    +TI    F+    V    + F +WD  GQ+R
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNICFTVWDVGGQDR 73
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ----AQGNPNMVMALAGNKADL 127
              L   Y++     I V D  ++   ER ++   ELQ         + V+ L  NK DL
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDSNDR---ERIQEVADELQKMLLVDELRDAVLLLFANKQDL 130
Query: 128 LDARKVT 134
            +A  ++
Sbjct: 131 PNAMAIS 137

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G   AGK++++ +   G+ +    +TI    F+    V    + F +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 56
Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDA 130
              L   Y++     I V D  ++     A++ +  + A+    + V+ +  NK DL +A
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-112
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-109
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-107
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-107
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-106
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-103
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-103
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-93
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-91
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	9e-91
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	9e-90
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	8e-89
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-88
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-86
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-86
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-86
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-86
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	4e-86
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-86
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	4e-85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-84
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-83
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-83
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	8e-83
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	9e-82
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-81
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-81
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-80
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	5e-79
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-78
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-78
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-78
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-77
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-77
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-77
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-77
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-77
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-77
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	8e-77
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	9e-77
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-74
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	9e-74
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-73
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-73
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	6e-72
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-71
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-71
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-71
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-70
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-69
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-69
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-68
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	7e-68
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-67
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	7e-67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	9e-67
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-66
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-66
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	7e-66
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-65
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	7e-65
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-64
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	8e-63
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-62
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-60
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-46
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-43
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-42
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-42
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-41
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	6e-41
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-39
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	9e-38
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-29
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-24
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-21
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-19
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	8e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	9e-13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	4e-12
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	4e-12
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	6e-12
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-11
2ged_A	193	SR-beta, signal recognition particle receptor beta	9e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	8e-08
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	3e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	4e-04
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	4e-04

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  316 bits (811), Expect = e-112
 Identities = 164/179 (91%), Positives = 172/179 (96%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  GNK+INAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVK
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           FEIWDTAGQERYHSLAPMYYRGAAAAIIV+D+TNQASFERAKKWVQELQAQGNPNMVMAL
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
           AGNK+DLLDARKVTAE+AQ YAQENGLFFMETSAKTATNV +IFYEIA+RLPRVQP  N
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  308 bits (791), Expect = e-109
 Identities = 91/179 (50%), Positives = 122/179 (68%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           +   G+     K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   K
Sbjct: 14  LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK 73

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+
Sbjct: 74  FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
           AGNK DL D R+V  ++A+ YA+  G   +ETSAK A N+ ++F  I++++P + P  N
Sbjct: 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  304 bits (781), Expect = e-107
 Identities = 121/169 (71%), Positives = 141/169 (83%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  303 bits (778), Expect = e-107
 Identities = 85/169 (50%), Positives = 116/169 (68%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G+     K+ LLGD G GKSS++ RFV+  F      TIGA+F ++T+   +   KF IW
Sbjct: 1   GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAG ER+ +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G P++V+A+AGNK
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
            DL D R+V   +A+ YA      F+ETSAK A N+N++F EI++R+P 
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  303 bits (777), Expect = e-106
 Identities = 76/202 (37%), Positives = 119/202 (58%), Gaps = 4/202 (1%)

Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
              GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ 
Sbjct: 8   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 67

Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
           ++WDTAG ER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L 
Sbjct: 68  QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 127

Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 181
           GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP ++   + S
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187

Query: 182 GM----VLMDRPGERTASASCC 199
                 + +++P E+  S   C
Sbjct: 188 REDMIDIKLEKPQEQPVSEGGC 209

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  294 bits (755), Expect = e-103
 Identities = 68/168 (40%), Positives = 109/168 (64%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G++  + K+VLLG+   GK+SLVLR+ + +F +   +T+GA+F ++ L +    V   IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQER+H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120

Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
            DL   R V+ +EA++YA+  G     TSAK    + ++F ++ KR+ 
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  293 bits (752), Expect = e-103
 Identities = 72/174 (41%), Positives = 107/174 (61%)

Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
              GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ 
Sbjct: 6   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 65

Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
           ++WDTAGQER+ SL P Y R +  A++VYDITN  SF +  KW+ +++ +   ++++ L 
Sbjct: 66  QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV 125

Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP + 
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  268 bits (688), Expect = 4e-93
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 4/175 (2%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEI 63
           G+     K+V+LGD  +GK+SL   F +  F +  + TIG  FF + + +     V  +I
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMAL 120
           WD  GQ     +   Y  GA   ++VYDITN  SFE  + W   V+++  +     ++AL
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
            GNK DL   R +  E+   + QENG      SAKT  +V   F ++A  +  ++
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  263 bits (674), Expect = 8e-91
 Identities = 71/160 (44%), Positives = 108/160 (67%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAG ER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V  +EA+A+A++NGL F+ETSA  +TNV   F  I   +
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  262 bits (673), Expect = 9e-91
 Identities = 67/160 (41%), Positives = 104/160 (65%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+G+ G GK++L+ RF + +F     +TIG  F ++T+ +  A VK +IWDTAG ER
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A++V+D+T   ++   ++W++EL       +V+ L GNK+DL  AR
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 146

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V  EEA+ +A+ NGL F+ETSA  +TNV   F  + K +
Sbjct: 147 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  260 bits (667), Expect = 9e-90
 Identities = 72/162 (44%), Positives = 109/162 (67%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y  +   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
            V  +EA+A+A++N L F+ETSA  +TNV + F  I   + R
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  259 bits (663), Expect = 8e-89
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 1/173 (0%)

Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ-TLAVNDATVK 60
            +   + +  K+ L+GD G GK++ + R + G+F +   +T+GA       L      +K
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
           F +WDTAGQE+   L  +YY GA+ AI+ +D+T++ + +   +WV+E QA       + +
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
             NK D+ + +K++ +      +     + E SAKTA N    F  +A+    
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  258 bits (661), Expect = 2e-88
 Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 21/209 (10%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF K +F    +STIG  F ++TL +    +K +IWDTAGQER
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA  A+IVYDI+  +S+E    W+ EL+   + N+ + L GNK+DL   R
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV----------------- 174
            V  EE++ +AQEN L F ETSA  + NV+  F E+   + +                  
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNA 194

Query: 175 --QPAPNPSGMVLMDRPGERTASA--SCC 199
               APN   + L   P E   +   +CC
Sbjct: 195 NGASAPNGPTISLTPTPNENKKANGNNCC 223

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  256 bits (656), Expect = 3e-88
 Identities = 73/162 (45%), Positives = 108/162 (66%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
            VT EEA+ +A+ENGL F+E SAKT  NV D F E AK++ +
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  253 bits (648), Expect = 1e-86
 Identities = 79/205 (38%), Positives = 112/205 (54%), Gaps = 40/205 (19%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK----- 60
            K  + K VLLG+   GKSS+VLR  K  F E   +TIGA+F +  + +ND  +K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 61  --------------------------------FEIWDTAGQERYHSLAPMYYRGAAAAII 88
                                           F+IWDTAGQERY S+ P+YYRGA  AI+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 89  VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF 148
           V+DI+N  + +RAK WV +L+   + N ++ L  NK D  +  +V   E Q YAQ+N L 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLL 179

Query: 149 FMETSAKTATNVNDIFYEIAKRLPR 173
           F++TSAKT TN+ +IFY +A+ + +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYK 204

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  253 bits (648), Expect = 1e-86
 Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 8/197 (4%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
           + SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129

Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR----VQPAPNPSGM 183
            + +  T         +N + + ETSAK A NV   F  IA+   +    V+        
Sbjct: 130 ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEP 189

Query: 184 VLMDRPGERTASASCCS 200
           + +D+     ASA  CS
Sbjct: 190 IKLDKNERAKASAESCS 206

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  251 bits (644), Expect = 2e-86
 Identities = 72/162 (44%), Positives = 105/162 (64%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT + +F     W+++ +   + NMV+ L GNK+DL   R
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
            V  EE +A+A+E+GL FMETSAKTA NV + F   AK + R
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  250 bits (640), Expect = 4e-86
 Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V++G+   GKSS++ R+ KG F +  + TIG  F  + + VND  V+  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA A ++V+  T++ SFE    W +++ A+   ++  AL  NK DLLD  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            +  EEA+  A+   L F  TS K   NV+++F  +A++ 
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  251 bits (643), Expect = 4e-86
 Identities = 70/160 (43%), Positives = 103/160 (64%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++G  G GKS L+ +F++ +F +    TIG  F S+ + V   TVK +IWDTAGQER
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT++ ++     W+ + +   +PN+V+ L GNK DL   R
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +VT  EA  +AQEN L F+ETSA T  NV + F + A+ +
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  251 bits (644), Expect = 5e-86
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVK--GQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
              +  K+ ++G+   GKS+L+  F     +F++    T G       + + D TV  E+
Sbjct: 16  TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75

Query: 64  W--DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ---GNPNMVM 118
           +  DTAG + Y      Y+ G   AI+V+D+++  SFE  K W + L++        +  
Sbjct: 76  FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA 135

Query: 119 ALAGNKADLLDARK-VTAEEAQAYAQENGLFFMETSAK-TATNVNDIFYEIAKRLPR 173
            L  NK DL   R  V  + AQ +A  N L F + SA     + +  F  IA    R
Sbjct: 136 VLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  249 bits (637), Expect = 4e-85
 Identities = 66/162 (40%), Positives = 104/162 (64%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+G+ G GK+ LV RF +G F   Q +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYR A A I+ YDIT + SF    +W++E++   +  ++  L GNK DL + R
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           +V+ + A+ +++   ++++ETSAK + NV  +F ++A RL  
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  246 bits (631), Expect = 2e-84
 Identities = 68/160 (42%), Positives = 103/160 (64%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAGQER
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +VT  EA  +AQEN L F+ETSA T  NV + F + A+++
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  244 bits (625), Expect = 5e-83
 Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 10/198 (5%)

Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKF 61
           A  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66

Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALA 121
            +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L      N+ + L 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLC 125

Query: 122 GNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR-------V 174
           GNK D+ D +     ++  + ++  L + + SAK+  N    F  +A++L          
Sbjct: 126 GNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 183

Query: 175 QPAPNPSGMVLMDRPGER 192
            PA  P  +V+      +
Sbjct: 184 MPALAPPEVVMDPALAAQ 201

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  242 bits (619), Expect = 6e-83
 Identities = 92/165 (55%), Positives = 117/165 (70%), Gaps = 3/165 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVLLG+   GKSS+VLRFV   F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL--- 128
           + SLAP YYR A AA++VYD+T   SF +A+ WV+EL  Q + ++++AL GNK D L   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124

Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
             RKV  EE +  A+E GL F ETSAKT  NVND+F  I +++P 
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  243 bits (622), Expect = 8e-83
 Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+G+ G GKS L+LRF    +     STIG  F  +T+ ++  TVK +IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRG+   IIVYD+T+Q SF   K W+QE+       ++  L GNK DL D R
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL--------PRVQPAPNPSGM 183
            V  + A+ +A  N + F+ETSA  +TNV D F  +A+++                    
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKG 189

Query: 184 VLMDRPGERTASASCC 199
            +  +    T +  CC
Sbjct: 190 NVNLKGQSLTNTGGCC 205

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  240 bits (615), Expect = 9e-82
 Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 1/172 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR-LPRVQPAPNPSG 182
            V    A+ +A   G+ F+ETSAK ATNV   F  +A     R+ P     G
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  240 bits (615), Expect = 1e-81
 Identities = 71/160 (44%), Positives = 99/160 (61%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   +
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V    A+ +A   G+ F+ETSAK ATNV   F  +A  +
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  238 bits (610), Expect = 5e-81
 Identities = 73/171 (42%), Positives = 102/171 (59%), Gaps = 1/171 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVL+GD   GK+ +V RF  G F E Q STIG  F  +TL +    VK +IWDTAGQER
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYR A  AI+ YDIT ++SF     W+++++     N+V  L GNK+DL + R
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150

Query: 132 KVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 181
           +V+  EAQ+ A+    L  +ETSAK ++NV + F  +A  L      P  S
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFS 201

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  236 bits (604), Expect = 3e-80
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL GD   GKSS ++R  K +F E   +T+G  F  +TL V+      ++WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA- 130
           + S+A  Y+R A   +++YD+T + SF   ++WV  ++   +  + + L GNKAD+ D  
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149

Query: 131 -----RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
                + V     +  A   G  F ETSAK  +N+ +    +A+ + +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  233 bits (596), Expect = 5e-79
 Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDA 130
           + +L P YYRGA   I+VYD+T + +F +   W+ EL+     N +V  L GNK D  + 
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KEN 135

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V   E   +A+++ + F+E SAKT   V   F E+ +++
Sbjct: 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  232 bits (593), Expect = 1e-78
 Identities = 63/174 (36%), Positives = 103/174 (59%), Gaps = 3/174 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GK+ ++ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   ++VYDITN+ SF+  + W++ ++   + ++   + GNK D+ D R
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV---QPAPNPSG 182
           +V+ E  +  A + G+ FMETSAK   NV + F+ +A+ +            +G
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAAG 183

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  232 bits (594), Expect = 1e-78
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 5/165 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++GD   GK+ L  RF  G+F +  E+TIG  F  + + ++   +K ++WDTAGQER
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81

Query: 72  YH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLD 129
           +  S+   YYR   A + VYD+TN ASF     W++E +     N +   L GNK DL  
Sbjct: 82  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTA---TNVNDIFYEIAKRL 171
           A +V  + AQ +A  + +   ETSAK      +V  IF  +A +L
Sbjct: 142 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  230 bits (589), Expect = 4e-78
 Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
           + SL   +YRG+   ++ + + +  SF+    W +E     +     +    + GNK D 
Sbjct: 69  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID- 127

Query: 128 LDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRL 171
           +  R+V+ EEAQA+ ++NG   + ETSAK ATNV   F E  +R+
Sbjct: 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  230 bits (588), Expect = 7e-78
 Identities = 61/160 (38%), Positives = 89/160 (55%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+G+   GK+S + R+    F     ST+G  F  +T+  +D  +K +IWDTAGQER
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA   +++YDI NQ SF   + W  +++     N  + L GNK DL D R
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V AE+ +  A + G  F E SAK   NV  +F  +   +
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  230 bits (588), Expect = 1e-77
 Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 4/175 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAG ER
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R
Sbjct: 70  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK----RLPRVQPAPNPSG 182
            V++E  +  A   G  F E SAK   NV   F  +      ++       +P+ 
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAV 184

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  228 bits (585), Expect = 1e-77
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYDIT++ +F   K+W + +    N    + L GNK+D ++ R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 123

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  228 bits (585), Expect = 2e-77
 Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
           K++L+GD G GK+ L++RF  G F+     ST+G  F ++ L V+   VK ++WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           R+ S+   YYR A A +++YD+TN+ASF+  + W+ E+      ++ + L GNK D    
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAP 178
           R V  E+ +  A+E GL FMETSAKT  NV+  F  IAK L  R   AP
Sbjct: 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  229 bits (586), Expect = 2e-77
 Identities = 57/161 (35%), Positives = 98/161 (60%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G  G GK+SL+ RF    F E  +ST+G  F  +T+ +    ++ +IWDTAGQER
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           ++S+   YYR A   I+VYDIT + +F+   KW++ +    + +  + L GNK D    R
Sbjct: 88  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 147

Query: 132 KVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRL 171
           ++T ++ + +AQ+  G+ F E SAK   NV++IF ++   +
Sbjct: 148 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  229 bits (585), Expect = 2e-77
 Identities = 58/160 (36%), Positives = 89/160 (55%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+++G+   GK+S + R+    F     ST+G  F  +T+  ++  VK +IWDTAGQER
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ + R
Sbjct: 85  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 144

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V  E+ Q  A++ G  F E SAK   +V   F  +   +
Sbjct: 145 VVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  229 bits (585), Expect = 3e-77
 Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 3/177 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V+LG    GK+SL  +FV+G+F E  + T+    +S+ + +        + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVEN-TYSKIVTLGKDEFHLHLVDTAGQDE 84

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y  L   +  G    ++VY +T+  SF+  +   Q+  +  G   + + L GNKADL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP-SGMVLM 186
           R+V A E +  A+  G  FME+SA+       IF ++ + + RV+ +        LM
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  227 bits (582), Expect = 5e-77
 Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 7/173 (4%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQE 70
           K+++LGD G GK+SL+ R+V  ++ +  ++TIGA F ++ + V+ D     ++WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKAD 126
           R+ SL   +YRGA   ++VYD+TN +SFE  K W  E     N          + GNK D
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129

Query: 127 LLDA-RKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRLPRVQPA 177
             ++ + V+ + AQ  A+  G +    TSAK A NV+  F EIA+   +   A
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQA 182

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  228 bits (583), Expect = 8e-77
 Identities = 72/192 (37%), Positives = 115/192 (59%), Gaps = 7/192 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK ++WDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYD+T++ +F   K+W + +    N    + L GNK+D ++ R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 140

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL------PRVQPAPNPSGMVL 185
            VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +       ++    N     +
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNI 200

Query: 186 MDRPGERTASAS 197
               G   +S S
Sbjct: 201 SINSGSGNSSKS 212

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  227 bits (580), Expect = 9e-77
 Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+++GD G GKSSL+LRF    F     +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRG    I+VYD+T+  SF   K+W+ E+  Q   ++   L GNK D  + +
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERK 129

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V  E+A  +A + G+   ETSAK   NV ++F  I + +
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  221 bits (566), Expect = 4e-74
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 11/171 (6%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND----------ATVKF 61
           KL+ LGD G GK++ + R+   +F     +T+G  F  + +  N             V  
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86

Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMAL 120
           ++WDTAGQER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA     N  + L
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNKADL D R+V   +A+  A + G+ + ETSA T  NV      +   +
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  219 bits (561), Expect = 9e-74
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ +LG    GKSSL ++FV+GQF++  + TI    F++ + VN      ++ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN-TFTKLITVNGQEYHLQLVDTAGQDE 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y      Y       I+VY +T+  SFE  K    + L   G   + + L GNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 181
           R ++ EE +A A+     F+E+SAK      D+F  I     ++  A +  
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQG 177

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  219 bits (559), Expect = 2e-73
 Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 4/174 (2%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
            K+   KL + G  G GKS+LV+RF+  +FI   + T+ + +      ++D  V  EI D
Sbjct: 24  AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILD 82

Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNK 124
           TAGQE        + R     ++VYDIT++ SFE          + +   N+ + L GNK
Sbjct: 83  TAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNK 141

Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTA-TNVNDIFYEIAKRLPRVQPA 177
           ADL  +R+V+ EE +  A E    F E SA T   N+ +IFYE+ + + R +  
Sbjct: 142 ADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMV 195

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  218 bits (557), Expect = 5e-73
 Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 11/171 (6%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKF 61
           K + LGD G GK+S++ ++  G+F     +T+G  F  + +                +  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMAL 120
           ++WDTAG ER+ SL   ++R A   ++++D+TN+ SF   + W+ +LQ    + N  + L
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNK+DL D R V  EEA+  A++ G+ + ETSA   TN++     +   +
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  214 bits (548), Expect = 6e-72
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+G+ G GKS+L   F   Q     E       + + + V+   V   ++D   Q  
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 72  YHSLAP-MYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLD 129
                     +   A +IV+ +T++ SF +  + +  L   + + ++ + L GNK+DL  
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           +R+V+ EE +  A       +ETSA    N  ++F    +
Sbjct: 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  213 bits (545), Expect = 3e-71
 Identities = 53/169 (31%), Positives = 99/169 (58%), Gaps = 2/169 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T     + + + ++   V+ +I DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQIDILDTAGQED 78

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D 
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
           R+V+ EEA+  A++  + ++ETSAKT  NV+ +F+++ + +   +   +
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  213 bits (545), Expect = 4e-71
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+G+ G GKS+L   F   Q     E       + + + V+   V   ++D   Q  
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 72  YHSLAPM---YYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADL 127
                 +     +   A +IV+ +T++ SF +  + +  L   + + ++ + L GNK+DL
Sbjct: 85  AG--GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142

Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
             +R+V+ EE +  A       +ETSA    N  ++F    +
Sbjct: 143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  213 bits (544), Expect = 7e-71
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 6/204 (2%)

Query: 1   MATTGNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND 56
           MA    K  N+    K++++G  G GKS+L L+F+  +F+E  E T     + + + ++ 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDG 59

Query: 57  ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPN 115
             V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 116 MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           +   L GNK+DL D R+V+ EEA+  A++  + ++ETSAKT  NV+ +F+++ + +   +
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179

Query: 176 PAPNPSGMVLMDRPGERTASASCC 199
              +        R          C
Sbjct: 180 MEDSKEKNGKKKRKSLAKRIRERC 203

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  210 bits (537), Expect = 3e-70
 Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 2/170 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++F++  F+   + TI    +++  +V+    + +I DTAGQE 
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED-SYTKICSVDGIPARLDILDTAGQEE 69

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     ++V+ I ++ SF    K   + L+ +   +  + L GNKADL   
Sbjct: 70  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
           R+V   EA A+   + + + E SAK   NV++ F ++ + + + Q    P
Sbjct: 130 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELP 179

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  208 bits (533), Expect = 1e-69
 Identities = 53/159 (33%), Positives = 95/159 (59%), Gaps = 2/159 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T     + + + ++   V+ +I DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQIDILDTAGQED 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           R+V+ EEA+  A +  + ++ETSAKT  NV+ +F+++ +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  219 bits (558), Expect = 3e-69
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 16/211 (7%)

Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTL--------A 53
                     K+ L+GD  AGK+SL+ + +   F   +  T G    ++           
Sbjct: 33  GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEND 92

Query: 54  VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN 113
                  F  WD  GQE  H+    +   ++  +++ D     +      W++ ++  G 
Sbjct: 93  DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG- 148

Query: 114 PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
               + +  NK D   +  +  ++           F   S K    V  I   +   +  
Sbjct: 149 GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

Query: 174 VQPAPN----PSGMVLMDRPGERTASASCCS 200
                     PS + + ++  E T +    +
Sbjct: 209 PDSIYGTPLAPSWIKVKEKLVEATTAQRYLN 239

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  207 bits (529), Expect = 4e-69
 Identities = 61/163 (37%), Positives = 98/163 (60%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + S+  +Y +     I+VY + NQ SF+  K    + ++ +    + + L GNK DL   
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R+V++ E +A A+E G  FMETSAK+ T V+++F EI +++  
Sbjct: 124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  206 bits (526), Expect = 1e-68
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 3/168 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++ + G  G GKSSLVLRFVKG F E    T+    + Q ++ + +    +I DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED-TYRQVISCDKSICTLQITDTTGSHQ 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ--AQGNPNMVMALAGNKADLLD 129
           + ++  +      A I+VY IT++ S E  K   +++        ++ + L GNK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPA 177
           +R+V + EA+A A+     FMETSAK   NV ++F E+     R   +
Sbjct: 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  204 bits (521), Expect = 7e-68
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLG  G GKS+L   F  G     +    G   + +++ V+       ++D   Q+ 
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGH-TYDRSIVVDGEEASLMVYDIWEQDG 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
              L         A +IVY +T++ SFE+A +   +  +A+   ++ + L GNK+DL+ +
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           R+V+ +E +A A      F+ETSA    NV  +F  + +
Sbjct: 122 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  203 bits (518), Expect = 2e-67
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 13/171 (7%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L +LGD  +GKSSL+ RF+ G +    E T     + + + V+  T    I + AG   
Sbjct: 9   RLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE-QYKKEMLVDGQTHLVLIREEAGAPD 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-----AQGNPNMVMALAGNKAD 126
                  +   A A I V+ + ++ SF+   +   +L       +G   + +    ++  
Sbjct: 67  AK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121

Query: 127 LLDARKVTAEEAQAY-AQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
               R V    A+A  A      + ET A    NV+ +F E+A+++  ++ 
Sbjct: 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  202 bits (515), Expect = 7e-67
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++VLLGD G GK+SL   F   Q  +     +G   + +TL V+       + DT   E+
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64

Query: 72  YHSLAPM--YYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLL 128
                      +G +A +IVY I ++ SFE A +   +L +     ++ + L GNKADL 
Sbjct: 65  LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124

Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
             R+V+ EE +A A      F+ETSA    NV ++F  + +
Sbjct: 125 RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  202 bits (516), Expect = 9e-67
 Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 4/190 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++V+ G  G GKSSLVLRFVKG F +    TI    + Q ++ + +    +I DT G  +
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED-TYRQVISCDKSVCTLQITDTTGSHQ 68

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ--AQGNPNMVMALAGNKADLLD 129
           + ++  +      A I+V+ +T++ S E      + +        ++ + L GNK D   
Sbjct: 69  FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ET 127

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRP 189
            R+V   EAQA AQE    FMETSAK   NV ++F E+     R   + N  G     + 
Sbjct: 128 QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQK 187

Query: 190 GERTASASCC 199
                   C 
Sbjct: 188 RTDRVKGKCT 197

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  201 bits (513), Expect = 2e-66
 Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 9/190 (4%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI    + + + ++  T   +I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEE 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE    + ++  + + + ++ M L GNK D L +
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD-LPS 123

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPG 190
           R V  ++AQ  A+  G+ F+ETSAKT   V+D FY + + + + +   +  G        
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDG------KK 177

Query: 191 ERTASASCCS 200
           ++  S + C 
Sbjct: 178 KKKKSKTKCV 187

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  199 bits (508), Expect = 5e-66
 Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI    + + + ++  T   +I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEE 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE   ++ ++  + + + ++ M L GNK+D L A
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD-LAA 122

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V + +AQ  A+  G+ ++ETSAKT   V D FY + + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  199 bits (509), Expect = 5e-66
 Identities = 33/178 (18%), Positives = 81/178 (45%), Gaps = 15/178 (8%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEF--QESTIGAAFFSQTLAVND---ATVKFEIWDT 66
           KL+++G+ G+GK++L+ + +K +  +   Q +T+G       + + D     +   +WD 
Sbjct: 4   KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63

Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKA 125
           AG+E ++S  P +    A  + VYD++   +  +  K W+  ++A+ + + V+ L G   
Sbjct: 64  AGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI-LVGTHL 122

Query: 126 DLLDARK---VTAEEAQAYAQENGL-----FFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           D+ D ++     ++  +    + G      +    + + +  +  +   I       +
Sbjct: 123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  199 bits (509), Expect = 7e-66
 Identities = 51/160 (31%), Positives = 92/160 (57%), Gaps = 3/160 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++GD G GKS+L ++F +  F++  + TI    + +   +++     ++ DTAGQE 
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEE 78

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  
Sbjct: 79  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEIAK 169
           RKVT ++ +  A +  + ++ETSAK    NV+  F+++ +
Sbjct: 139 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  198 bits (506), Expect = 2e-65
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
            L +LG  GAGKS+L ++F+  +FI   +  +    +S    V+   V   + DTA  + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED-TYSSEETVDHQPVHLRVMDTADLDT 81

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ---GNPNMVMALAGNKADLL 128
             +    Y   A A ++VY + ++ SF+ +  +++ L         ++   L GNK D+ 
Sbjct: 82  PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140

Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKT-ATNVNDIFYEIAK 169
             R+VT  E  A A   G  F E SA     +V  +F+E  +
Sbjct: 141 QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  197 bits (503), Expect = 7e-65
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI    + + + ++  T   +I DTAGQE 
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEE 81

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SF     + ++  + + + ++ M L GNK D L  
Sbjct: 82  YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD-LPT 140

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           R V  ++A   A+  G+ F+ETSAKT   V D FY + + + + +
Sbjct: 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  195 bits (498), Expect = 2e-64
 Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++FV+G F+E  + TI    + + + V+      EI DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAK 169
           R V  E+ Q  A++     F+E+SAK+  NVN+IFY++ +
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  192 bits (489), Expect = 8e-63
 Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 7/176 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDAT---VKFEIWDTA 67
           ++VL+G+ G GKS+L   F       +     +G   + +TL V+  +   +  ++W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 68  GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKAD 126
           G+  +  L     +   A +IVY IT++ASFE+A +   +L +A+   ++ + L GNK+D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125

Query: 127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSG 182
           L+  R+V+  E +A A      F+ETSA    NV ++F  I +++   + +   + 
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNE 181

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  190 bits (485), Expect = 5e-62
 Identities = 49/171 (28%), Positives = 89/171 (52%), Gaps = 9/171 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQE--STIGAAFFSQTLAVNDAT---VKFEIWDT 66
           ++VL+G+ G GKS+L   F              +G   + +TL V+  +   +  ++W+ 
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97

Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKA 125
            G+  +  L     +   A +IVY IT++ASFE+A +   +L +A+   ++ + L GNK+
Sbjct: 98  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155

Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
           DL+  R+V+  E +A A      F+ETSA    NV ++F  I +++   + 
Sbjct: 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 206

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  185 bits (471), Expect = 3e-60
 Identities = 33/168 (19%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ ++G++ +GKS+LV R++ G +++ +ES  G   F + + V+  +    I D  G   
Sbjct: 22  KVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLL-- 128
                  +     A + V+ + ++ SF+    +       +    + M L G +  +   
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAA 134

Query: 129 DARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPRVQ 175
           + R +    A+  + +     + ET A    NV  +F ++A+++  ++
Sbjct: 135 NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  150 bits (380), Expect = 3e-46
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 10/173 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K+V++GD   GK+ L+L F KG+       T+   F  FS  +   +      +WDTAGQ
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV---FENFSHVMKYKNEEFILHLWDTAGQ 81

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ Y  +   ++ + + N+ SF+    KW  E++          L G K DL 
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLR 140

Query: 129 D--ARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPRVQPAP 178
              +  VT +E     Q+ G   ++E S+     +N++F +    +   +P P
Sbjct: 141 KDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPVP 193

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  143 bits (363), Expect = 2e-43
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 16/170 (9%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 69
           K V +GD   GK+ +++ +   +F      T+   F  FS  +AV+   V   +WDTAGQ
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGQIVNLGLWDTAGQ 67

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLL 128
           E Y  L P+ YRGA   ++ + + ++AS+E    KW+ EL+ +  PN+ + L G K DL 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLR 126

Query: 129 D--------ARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAK 169
           D           +T+ + +   ++ G   ++E S+KT  NV  +F    K
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  141 bits (357), Expect = 1e-42
 Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++ F K QF E    T+    +   + V+   V+  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYIADIEVDGKQVELALWDTAG 82

Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADL 127
           QE Y  L P+ Y      ++ + I +  S E    KW  E++    PN+ + L GNK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 141

Query: 128 LDARK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAK 169
                            V +EE +  A     F ++E SAKT   V ++F    +
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  140 bits (354), Expect = 2e-42
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 18/180 (10%)

Query: 4   TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKF 61
           + + +   K V +GD   GK+ L++ +    F      T+   F  FS  + VN ATV  
Sbjct: 2   SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV---FDNFSANVVVNGATVNL 58

Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMAL 120
            +WDTAGQE Y+ L P+ YRGA   I+ + + ++AS+E    KW+ EL+    P + + L
Sbjct: 59  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVL 117

Query: 121 AGNKADLLDARK----------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAK 169
            G K DL D ++          +T  + +   +  G   ++E S+K+  NV  +F    +
Sbjct: 118 VGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  139 bits (353), Expect = 5e-42
 Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 16/172 (9%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GK+SL++ F  G F E    T+    +   L V    V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDD 94

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130
           Y  L P++Y  A+  ++ +D+T+  SF+    +W  E+       + + + G K DL   
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153

Query: 131 RK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAK 169
           +             VT    Q  A+  G   ++E SA+   NV+ +F E A+
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  139 bits (352), Expect = 6e-42
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 20/183 (10%)

Query: 3   TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVK 60
                 I  KLV++GD   GK+ L++ F K +F E    T+   F  +   + V+   V+
Sbjct: 18  LYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV---FENYVADIEVDGKQVE 74

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMA 119
             +WDTAGQE Y  L P+ Y      ++ + + +  S E    KWV E++    PN+ + 
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPII 133

Query: 120 LAGNKADLLDARK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE 166
           L  NK DL                 V  ++ +A A     + ++E SAKT   V ++F  
Sbjct: 134 LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

Query: 167 IAK 169
             +
Sbjct: 194 ATR 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  136 bits (345), Expect = 5e-41
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 16/172 (9%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V++GD   GK+ L++ +    F      T+    +S  + V+   V   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQED 90

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130
           Y  L P+ Y      +I + + + ASFE  + KW  E++    PN  + L G K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149

Query: 131 RK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAK 169
           +             +T  +  A A+E G   ++E SA T   +  +F E  +
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  136 bits (345), Expect = 6e-41
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 20/183 (10%)

Query: 3   TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVK 60
             G +    K VL+GD   GK+SLV+ +    +      T    F  FS  ++V+   V+
Sbjct: 13  AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA---FDNFSAVVSVDGRPVR 69

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMA 119
            ++ DTAGQ+ +  L P+ Y      ++ + + + +SF+    KWV E++    P   + 
Sbjct: 70  LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPII 128

Query: 120 LAGNKADLLDARK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE 166
           L G ++DL +  K            V  E A+  A+E     ++E SA T  N+ ++F  
Sbjct: 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188

Query: 167 IAK 169
              
Sbjct: 189 AIV 191

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  131 bits (332), Expect = 3e-39
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 21/182 (11%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFE 62
            N+N+  K+V++GD   GK++L+  F K  F E    T+   F  ++ +  ++   ++  
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELS 58

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALA 121
           +WDT+G   Y ++ P+ Y  + A +I +DI+   + +    KW  E+Q +  PN  M L 
Sbjct: 59  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLV 117

Query: 122 GNKADLLDARK------------VTAEEAQAYAQENGLF-FMETSAKTATN-VNDIFYEI 167
           G K+DL                 V+ ++    A++ G   ++E SA  + N V DIF+  
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

Query: 168 AK 169
             
Sbjct: 178 TL 179

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  131 bits (330), Expect = 7e-39
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 20/184 (10%)

Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATV 59
              G   +  K V++GD   GK+ L++ +    F E    T+   F  ++ ++ V     
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV---FDHYAVSVTVGGKQY 66

Query: 60  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVM 118
              ++DTAGQE Y  L P+ Y      +I + + N ASF+  K +WV EL+ +  PN+  
Sbjct: 67  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPF 125

Query: 119 ALAGNKADLLDARK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFY 165
            L G + DL D  K            +  E+ Q  A+E G   ++E SA T   +  +F 
Sbjct: 126 LLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 185

Query: 166 EIAK 169
           E   
Sbjct: 186 EAII 189

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  130 bits (329), Expect = 1e-38
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 16/172 (9%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V++GD   GK+ L++ +    F      T+    +S  + V+   V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQED 65

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA 130
           Y  L P+ Y     ++I + + + ASFE  + KW  E++    PN  + L G K DL D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124

Query: 131 RK------------VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAK 169
           +             +T  +  A A+E G   ++E SA T   +  +F E  +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  128 bits (324), Expect = 9e-38
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 21/181 (11%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEI 63
           N+N+  K+V++GD   GK++L+  F K  F E    T+   F  ++ +  ++   ++  +
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSL 80

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAG 122
           WDT+G   Y ++ P+ Y  + A +I +DI+   + +    KW  E+Q +  PN  M L G
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 139

Query: 123 NKADLLDARK------------VTAEEAQAYAQENGLF-FMETSAKTATN-VNDIFYEIA 168
            K+DL                 V+ ++    A++ G   ++E SA  + N V DIF+   
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 199

Query: 169 K 169
            
Sbjct: 200 L 200

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  124 bits (314), Expect = 3e-36
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 21/185 (11%)

Query: 2   ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATV 59
                     KLVL+GDV  GK++++    K  + E    T+   F  ++  L   +  V
Sbjct: 19  RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENYTACLETEEQRV 75

Query: 60  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNPNMVM 118
           +  +WDT+G   Y ++ P+ Y  + A ++ +DI+   + + A KKW  E+     P+  +
Sbjct: 76  ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPSTRV 134

Query: 119 ALAGNKADLLDARK------------VTAEEAQAYAQENGLF-FMETSAKTA-TNVNDIF 164
            L G K DL                 ++ E+  A A++ G   ++E SA T+  +++ IF
Sbjct: 135 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 194

Query: 165 YEIAK 169
              + 
Sbjct: 195 RTASM 199

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  108 bits (270), Expect = 3e-29
 Identities = 41/218 (18%), Positives = 66/218 (30%), Gaps = 66/218 (30%)

Query: 17  GDVGAGKSSLVLRFVKGQ---FIEFQESTIGAAFFSQTLAVND---------------AT 58
           G  G GKS L  RFV+     F     S +  + F   +  ND                 
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 59  VKFEIW-------DTAGQERYHSLAPMYYRGAAA-------------------------- 85
            K  I        D   Q    +    Y + AAA                          
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 86  -----------AIIVYDITNQA--SFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDAR 131
                       ++  D++     +F+   K+V  L  Q       + +   K D    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
            +      A +++N L  +ETSA++  NV+  F  + +
Sbjct: 215 YIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLVQ 251

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 96.6 bits (240), Expect = 3e-24
 Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 16/183 (8%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
                      K V++GD   GK+ L++ +    F      T+   + S  + V+   V 
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVN 204

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMA 119
             +WDTAG E Y  L P+ Y      +I + + + ASF   + KW  E++    PN  + 
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPII 263

Query: 120 LAGNKADL---------LDARK---VTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYE 166
           L G K DL         L  +K   +T  +  A A+E G   ++E SA T   +  +F E
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

Query: 167 IAK 169
             +
Sbjct: 324 AIR 326

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 85.2 bits (211), Expect = 4e-21
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 19/184 (10%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-----------TIGAAFFSQTLA 53
            N+ IN K+V  G   +GK++  L+++  +  E ++            T+   F    + 
Sbjct: 9   ANREINFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67

Query: 54  -VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQ 109
            V     +F ++   GQ  Y++   +  RG    + V D         A+      + L 
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 110 AQGNP--NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
             G    ++ + +  NK DL DA  V          E     +E  A     V +   E+
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPDALPV-EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186

Query: 168 AKRL 171
           ++ +
Sbjct: 187 SRLV 190

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 82.3 bits (203), Expect = 3e-19
 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 24/187 (12%)

Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQF----IEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           + +KL+L+G  G+GKSS+    +   +         +TI       +       +   +W
Sbjct: 2   LGSKLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATID---VEHSHLRFLGNMTLNLW 57

Query: 65  DTAGQERY-----HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA--QGNPNMV 117
           D  GQ+ +            ++     I V+D+ +    +  + + + L+   + +P+  
Sbjct: 58  DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 117

Query: 118 MALAGNKADLL--DARKVTAEEAQAYAQE-------NGLFFMETSAKTATNVNDIFYEIA 168
           + +  +K DL+  D R+   +       E         L    TS    +        + 
Sbjct: 118 IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVC 177

Query: 169 KRLPRVQ 175
             +P + 
Sbjct: 178 SLIPNMS 184

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 79.6 bits (196), Expect = 6e-19
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 24/184 (13%)

Query: 7   KNINAKLVLLGDVGAGKSSLV-LRFVKGQFIE--FQESTIGAAFFSQTLAVNDATVKFEI 63
           +    +++L+G   +GKSS+  + F K    E  F EST       +    N + V F+I
Sbjct: 17  QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK---IYKDDISNSSFVNFQI 73

Query: 64  WDTAGQERYHSLAP---MYYRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVM 118
           WD  GQ  +        M +RG  A I V D  +    +  R    V +   + NP+M  
Sbjct: 74  WDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAY-KVNPDMNF 132

Query: 119 ALAGNKADLLDA-----------RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 167
            +  +K D L             ++   + A A  ++  L F  TS    + + + F ++
Sbjct: 133 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAFSKV 191

Query: 168 AKRL 171
            ++L
Sbjct: 192 VQKL 195

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 24/164 (14%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
            +L L+G   +GK++ V     GQF E    T+G  F  + +   +  V  ++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMVMALAGN 123
           R+ S+   Y RG +A + + D  +Q   E +K    EL         QG P +V+    N
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQGIPVLVLG---N 132

Query: 124 KADLLDARKVTAEEAQAYAQENGL-----FFMETSAKTATNVND 162
           K DL  A  +  +E       + +          S K   N++ 
Sbjct: 133 KRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 63.4 bits (155), Expect = 6e-13
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 29/182 (15%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
            K++++G   AGK++++ +F   + +     TIG     + + +N+   +F +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMVMALAGN 123
              S    YY      I+V D T++      +   +EL         +    ++ A   N
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIFA---N 125

Query: 124 KADLLDARKVTAEEAQAYAQENGL-----FFMETSAKTATNVND----IFYEIAKRLPRV 174
           K D+ +   +T  E   + +   +           A T   +      +   +  RL   
Sbjct: 126 KQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHH 183

Query: 175 QP 176
             
Sbjct: 184 HH 185

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 63.0 bits (154), Expect = 8e-13
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 23/168 (13%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
             N   ++++LG  GAGK++++ R   G+ +  +  TIG  F  +TL+  +  +K  +WD
Sbjct: 14  GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSYKN--LKLNVWD 68

Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMVM 118
             GQ         YY   AA I V D T++     A    +EL         Q    +V 
Sbjct: 69  LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLMLQEEELQDAALLVF 125

Query: 119 ALAGNKADLLDARKVTAEEAQAYA----QENGLFFMETSAKTATNVND 162
           A   NK D   A    +E ++       ++     + +SA     + +
Sbjct: 126 A---NKQDQPGALSA-SEVSKELNLVELKDRSWSIVASSAIKGEGITE 169

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 62.6 bits (153), Expect = 9e-13
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 23/162 (14%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G   AGK++++ +   G+ +     TIG  F  +T+   +  + F +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDK 56

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMVMALAGNK 124
              L   Y++     I V D  ++     A+   +EL         +    +V A   NK
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFA---NK 110

Query: 125 ADLLDARKVTAEEAQAYA----QENGLFFMETSAKTATNVND 162
            DL +A    AE          +    +   T A +   + +
Sbjct: 111 QDLPNAMNA-AEITDKLGLHSLRHRNWYIQATCATSGDGLYE 151

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 25/164 (15%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
            +++++G   AGK++++ +   G+ +     TIG  F  +T+   +  + F +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ICFTVWDVGGQD 84

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMVMALAGN 123
           +   L   Y++     I V D  ++   + +     ELQ        +    +V A   N
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESA---DELQKMLQEDELRDAVLLVFA---N 138

Query: 124 KADLLDARKVTAEEAQAYAQENGL-----FFMETSAKTATNVND 162
           K D+ +A  +   E         L     +   T A   T + D
Sbjct: 139 KQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD 180

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 27/176 (15%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
            +L++LG   AGK++++ +F           T+G  F  +TL       K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMVMALAGN 123
              S    Y+      I V D  ++   +  +   +ELQ+        G   ++ A   N
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ---RELQSLLVEERLAGATLLIFA---N 127

Query: 124 KADLLDARKVTAEEAQAYA----QENGLFFMETSAKTATNVND----IFYEIAKRL 171
           K DL  A        +A      + +       SA T  ++      +  +I+ R+
Sbjct: 128 KQDLPGALSC-NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 25/170 (14%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
              +   K++++G   AGK++++ +F   + +     TIG     + + +N+   +F +W
Sbjct: 16  PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIG--SNVEEIVINN--TRFLMW 70

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMV 117
           D  GQE   S    YY      I+V D T++      +   +EL         +    ++
Sbjct: 71  DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLI 127

Query: 118 MALAGNKADLLDARKVTAEEAQAYAQENGL-----FFMETSAKTATNVND 162
            A   NK D+ +   +T  E   + +   +           A T   +  
Sbjct: 128 FA---NKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 23/169 (13%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
              +   +++LLG   AGK++L+ +            T G  F  +++       K  +W
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQG--FKLNVW 65

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMV 117
           D  GQ +       Y+      I V D  ++  FE      QEL            P ++
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG---QELTELLEEEKLSCVPVLI 122

Query: 118 MALAGNKADLLDARKVTAEEAQAYA----QENGLFFMETSAKTATNVND 162
            A   NK DLL A    +E A+       ++        SA T   V D
Sbjct: 123 FA---NKQDLLTAAPA-SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 23/164 (14%)

Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 69
             ++++LG   AGK+S++ R   G  +     T+G     +TL   +  + FE+WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTTV-PTVG--VNLETLQYKN--ISFEVWDLGGQ 76

Query: 70  ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMVMALAG 122
                    Y+    A I V D T++     AK    EL A       + +  ++ A   
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELRKSLLLIFA--- 130

Query: 123 NKADLLDARKVTAEEAQAYA----QENGLFFMETSAKTATNVND 162
           NK DL DA    AE A+              +++S+KT   + +
Sbjct: 131 NKQDLPDAASE-AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVE 173

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G      KLV LG   AGK++L+      +  +    T+     S+ L +    + F  +
Sbjct: 20  GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH--PTSEELTIA--GMTFTTF 74

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMV 117
           D  G  +   +   Y       + + D  +      +K   +EL +          P ++
Sbjct: 75  DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESK---EELDSLMTDETIANVPILI 131

Query: 118 MALAGNKADLLDARKVTAEE 137
           +    NK D  +A  ++ E 
Sbjct: 132 LG---NKIDRPEA--ISEER 146

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 23/163 (14%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
            ++++LG  GAGK++++ R   G+ +     TIG  F  +T+   +  +KF++WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNMVMALAGN 123
                   YY    A I V D  ++     +K    EL A       +    +V A   N
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK---SELVAMLEEEELRKAILVVFA---N 116

Query: 124 KADLLDARKVTAEEAQAYA----QENGLFFMETSAKTATNVND 162
           K D+  A    +E A +      ++      +TSA   T +++
Sbjct: 117 KQDMEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 21/170 (12%)

Query: 5   GNKNINAKLVLLG-DVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFE 62
              +    ++ LG D  +GK++++ +             TIG  F  +    +   + F 
Sbjct: 16  PRGSKEVHVLCLGLD-NSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFT 70

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ------ELQAQGNPNM 116
           ++D +GQ RY +L   YY+   A I V D +++     AK+ +       +++ +  P +
Sbjct: 71  VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130

Query: 117 VMALAGNKADLLDARKVTAEEAQAYA----QENGLFFMETSAKTATNVND 162
             A   NK DL DA     + +Q       ++       + A     + +
Sbjct: 131 FFA---NKMDLRDAVTS-VKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 60.7 bits (148), Expect = 6e-12
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 22/141 (15%)

Query: 5   GNKNINAKLVLLG-DVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
           G  N + KL+ LG D  AGK++L+      +    Q  T      S+ LA+    +KF  
Sbjct: 18  GLWNKHGKLLFLGLD-NAGKTTLLHMLKNDRLATLQ-PTWH--PTSEELAIG--NIKFTT 71

Query: 64  WDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGNPNM 116
           +D  G  +   L   Y+      + + D  +   F+ A+    EL A       +  P +
Sbjct: 72  FDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR---VELDALFNIAELKDVPFV 128

Query: 117 VMALAGNKADLLDARKVTAEE 137
           ++    NK D  +A  V+  E
Sbjct: 129 ILG---NKIDAPNA--VSEAE 144

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 28/179 (15%)

Query: 13  LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----DATVKFEIWDTAG 68
           ++L+G    GKSS+  + V           + +     T   +       +   + +  G
Sbjct: 2   VLLMGVRRCGKSSI-CKVVFHNMQPLDTLYLES-----TSNPSLEHFSTLIDLAVMELPG 55

Query: 69  QERYHSLA---PMYYRGAAAAIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGN 123
           Q  Y   +      ++   A + V D  ++   +       ++    + NP++ + +  +
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAY-KVNPSINIEVLIH 114

Query: 124 KADLLDA-----------RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           K D L             ++   E  +       + F  TS    + + + F  I ++L
Sbjct: 115 KVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS-IYEAFSRIVQKL 172

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 15/137 (10%)

Query: 7   KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWD 65
           K+    ++ +G   +GK+ L +R + GQ+ + Q ++I     S    V N+      + D
Sbjct: 4   KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLID 60

Query: 66  TAGQERY-HSLAPMYYRGAAAAIIVYDITNQASFERAKK-------WVQELQAQGNPNMV 117
             G E     L   +   A A + V D        +                      ++
Sbjct: 61  LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLI 120

Query: 118 MALAGNKADLLDARKVT 134
                NK D+  A+   
Sbjct: 121 AC---NKQDIAMAKSAK 134

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 17/139 (12%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G  +    +++ G   +GK+SL+              +          A +       + 
Sbjct: 43  GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQE-----PLSAADYDGSGVTLV 96

Query: 65  DTAGQERYHSLAPMYYRGAAAAI--IVYDI---TNQASFERAKKWVQEL----QAQGNPN 115
           D  G  +       Y +  A  +  +++ +    +        +++ ++    ++     
Sbjct: 97  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156

Query: 116 MVMALAGNKADLLDARKVT 134
           + + +A NK++L  AR  +
Sbjct: 157 IDILIACNKSELFTARPPS 175

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 17/138 (12%), Positives = 48/138 (34%), Gaps = 15/138 (10%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
            K+    +++ G   +GK+SL+              +          A +       + D
Sbjct: 8   QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEP-----LSAADYDGSGVTLVD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAI--IVYDI---TNQASFERAKKWVQEL----QAQGNPNM 116
             G  +       Y +  A  +  +++ +    +        +++ ++    ++     +
Sbjct: 62  FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 121

Query: 117 VMALAGNKADLLDARKVT 134
            + +A NK++L  AR  +
Sbjct: 122 DILIACNKSELFTARPPS 139

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 50.3 bits (120), Expect = 8e-08
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 20/144 (13%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
                      +++++G   AGK++++ +   G+ +     TIG  F  +T+   +  + 
Sbjct: 156 QPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--IS 210

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-------QGN 113
           F +WD  GQ++   L   Y++     I V D  ++     A+   +EL         +  
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDA 267

Query: 114 PNMVMALAGNKADLLDARKVTAEE 137
             +V A   NK DL +A  + A E
Sbjct: 268 VLLVFA---NKQDLPNA--MNAAE 286

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 14/133 (10%)

Query: 65  DTAGQERYHSLAPMYYRGAAAA-----IIVYDITNQASFERAKKWVQELQAQGNPNMVMA 119
           DT G +    L  +    A          +  +T+ A        V   +    P     
Sbjct: 89  DTPGLDDVGELGRLRVEKARRVFYRADCGIL-VTDSAPTPYEDDVVNLFKEMEIP---FV 144

Query: 120 LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 179
           +  NK D+L  +    E    Y        +  SA      +DI   I++ LP  +  P 
Sbjct: 145 VVVNKIDVLGEKA--EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPY 202

Query: 180 PSGMVLMDRPGER 192
              ++     G+ 
Sbjct: 203 LGDLI---DGGDL 212

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 50/144 (34%)

Query: 10  NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK----FEI-W 64
              +++ G +G+GK+ + L                              V+    F+I W
Sbjct: 150 AKNVLIDGVLGSGKTWVAL-----------------------DVCLSYKVQCKMDFKIFW 186

Query: 65  DTAGQER------------YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ- 111
                               + + P +   +      +    +      +  ++ L    
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLLKSK 241

Query: 112 GNPNMVMALAGNKADLLDARKVTA 135
              N ++ L     ++ +A+   A
Sbjct: 242 PYENCLLVL----LNVQNAKAWNA 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 22/177 (12%), Positives = 57/177 (32%), Gaps = 23/177 (12%)

Query: 19  VGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----DATVKFEIWDTAGQ-ERYH 73
           + +  +      +    +  QE  +   F  + L +N     + +K E    +     Y 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 74  S-LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV---MALAGNKADLLD 129
                +Y          Y+++    + + ++ + EL+     N++   +  +G K  +  
Sbjct: 114 EQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSG-KTWV-- 166

Query: 130 ARKVTAEEAQAYAQENGLFFM-----ETSAKTATNVNDIFYEIAKRL-PRVQPAPNP 180
           A  V          +  +F++      +       +  + Y+I      R   + N 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 120 LAGNKADLLDARKVTAEEAQAYAQENGLF--FMETSAKTATNVNDIFYEIAKRLPRVQPA 177
           +  NK D +   K          +++      +  SA    N++++   I K LP     
Sbjct: 127 VVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP-EGEP 185

Query: 178 PNPSGMVLMDRPGER 192
             P  M+  D P  R
Sbjct: 186 LFPEDMI-TDLP-LR 198

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 120 LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
           +  NK D+ D   +  +  + + +E GL  ++ SA   T ++ +  EI K L  +
Sbjct: 285 VVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 4/106 (3%)

Query: 87  IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG 146
            +V+ +  +       + V          + + L GNK D     +   +       E  
Sbjct: 89  AVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAE 148

Query: 147 LFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGER 192
              +  SA     V ++  ++   +P   P   P      D+    
Sbjct: 149 PRML--SALDERQVAELKADLLALMP-EGPFFYPEDYAKSDQT-FG 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.98
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.86
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.84
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.79
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.77
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.66
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.65
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.64
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.63
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.61
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.59
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.59
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.57
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.54
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.54
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.54
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.47
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.46
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.45
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.41
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.3
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.3
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.1
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.05
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.0
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.98
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.97
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.93
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.76
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.75
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.68
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.48
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.4
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.38
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.31
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.29
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.22
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.18
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.15
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.08
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.01
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.0
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.8
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.74
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.62
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.61
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.56
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.51
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.51
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.5
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.5
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.48
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.47
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.46
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.46
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.46
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.45
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.43
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.4
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.4
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.39
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.39
2xxa_A	433	Signal recognition particle protein; protein trans	97.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.35
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.33
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.33
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.32
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.3
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.29
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.29
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.28
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.28
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.28
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.28
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.28
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.27
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.26
1g6h_A	257	High-affinity branched-chain amino acid transport	97.26
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.26
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.26
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.25
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.25
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.24
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.24
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.24
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.23
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.23
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.23
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.22
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.22
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.22
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.22
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.22
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.2
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.2
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.19
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.18
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.18
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.17
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.16
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.16
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.14
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.12
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.12
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.12
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.11
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.11
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.11
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.1
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.1
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.1
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.09
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.09
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.08
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.07
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.07
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.06
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.06
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.05
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.05
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.05
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.05
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.04
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.04
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.03
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.03
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.02
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.02
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.02
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.02
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.02
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.01
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.01
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.01
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.0
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.0
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.99
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.99
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.99
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.99
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.97
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.97
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.97
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.96
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.96
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.96
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.94
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.93
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.93
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.93
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.93
1via_A	175	Shikimate kinase; structural genomics, transferase	96.92
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.92
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.91
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.91
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.91
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.9
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.89
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.88
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.88
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.87
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.87
3co5_A	143	Putative two-component system transcriptional RES	96.87
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.86
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.86
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.86
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.86
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.86
3end_A	307	Light-independent protochlorophyllide reductase ir	96.85
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.85
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.85
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.84
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.84
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.84
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.83
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.83
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.83
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.81
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.8
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.79
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.79
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.77
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.76
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.76
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.75
2og2_A	359	Putative signal recognition particle receptor; nuc	96.75
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.75
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.74
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.74
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.74
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.72
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.72
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.72
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.71
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.7
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.7
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.7
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.7
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.7
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.7
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.69
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.69
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.68
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.68
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.68
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.66
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.65
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.62
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.59
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.57
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.56
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.54
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.53
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.53
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.52
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.52
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.48
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.48
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.47
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.45
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.43
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.43
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.42
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.42
3bos_A	242	Putative DNA replication factor; P-loop containing	96.41
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.41
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.41
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.4
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.39
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.39
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.37
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.3
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.3
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.28
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.28
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.27
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.25
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.24
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.23
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.21
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.2
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.19
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.19
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.19
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.18
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.18
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.17
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.17
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.16
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.15
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.14
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.14
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.14
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.13
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.11
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.11
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.11
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.09
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.03
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.03
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.03
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.02
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.02
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.01
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.98
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.98
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.97
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.95
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.95
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.91
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.9
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.89
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.89
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.89
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.88
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.87
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.87
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.87
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.85
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.85
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.84
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.83
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.83
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.79
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.78
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.77
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.75
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.72
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.71
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.7
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.65
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.65
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.62
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.62
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.61
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.6
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.59
2qgz_A	308	Helicase loader, putative primosome component; str	95.59

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.3e-43  Score=260.02  Aligned_cols=172  Identities=42%  Similarity=0.740  Sum_probs=147.0

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      +++.+++||+|+|.+|+|||||+++|+.+.+...+.++.|.++.......++..+.+++|||+|++++..++..++++++
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~   87 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA   87 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      ++++|||++++++|+.+..|+..+.....+++|+++|+||+|+.+.+.+..+++..+++.++++|++|||++|.||+++|
T Consensus        88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F  167 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF  167 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence            99999999999999999999999988777889999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHhccccCC
Q 029029          165 YEIAKRLPRVQP  176 (200)
Q Consensus       165 ~~l~~~~~~~~~  176 (200)
                      +.|++.+.....
T Consensus       168 ~~i~~~i~~~~~  179 (216)
T 4dkx_A          168 RRVAAALPGMES  179 (216)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHHHhhhc
Confidence            999999876543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=9.6e-37  Score=222.21  Aligned_cols=170  Identities=41%  Similarity=0.680  Sum_probs=156.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .....+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            34668999999999999999999999988887788888888888888889989999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999988777888889999999999999999999999999999


Q ss_pred             HHHHhccccC
Q 029029          166 EIAKRLPRVQ  175 (200)
Q Consensus       166 ~l~~~~~~~~  175 (200)
                      +|.+.+.+..
T Consensus       164 ~l~~~i~~~~  173 (206)
T 2bcg_Y          164 TMARQIKESM  173 (206)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.9e-35  Score=210.80  Aligned_cols=176  Identities=93%  Similarity=1.318  Sum_probs=154.1

Q ss_pred             CCCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q 029029            1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   80 (200)
Q Consensus         1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   80 (200)
                      |+......+.+||+|+|++|+|||||+++|+++.+.....++.+.++......+++..+.+.+||+||++.+...+..++
T Consensus         3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   82 (181)
T 2efe_B            3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   82 (181)
T ss_dssp             -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred             ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence            55666778899999999999999999999999888877778888888888888888899999999999999999999999


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ..+|++|+|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|.|+
T Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (181)
T 2efe_B           83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV  162 (181)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence            99999999999999999999999999998876678999999999999877778888999999999999999999999999


Q ss_pred             HHHHHHHHHhccccCC
Q 029029          161 NDIFYEIAKRLPRVQP  176 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~~  176 (200)
                      +++|++|.+.+....+
T Consensus       163 ~~l~~~l~~~~~~~~~  178 (181)
T 2efe_B          163 KEIFYEIARRLPRVQP  178 (181)
T ss_dssp             HHHHHHHHHTCC----
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999998876543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.3e-36  Score=220.07  Aligned_cols=193  Identities=36%  Similarity=0.638  Sum_probs=150.5

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            35678999999999999999999999988887788888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCCCCH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTATNV  160 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  160 (200)
                      +|+|+|++++.++..+..|+..+.....    .+.|+++|+||+|+. .+....+++..++. ..+++++++||++|.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988776532    478999999999997 45567778888887 67889999999999999


Q ss_pred             HHHHHHHHHhccccCCCC-----CCCCceeccCCCCC-CCCCCCCC
Q 029029          161 NDIFYEIAKRLPRVQPAP-----NPSGMVLMDRPGER-TASASCCS  200 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~c~~  200 (200)
                      +++|++|.+.+.++....     .+..+. .+.+++. .++++|||
T Consensus       163 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          163 EQAFQTIARNALKQETEVELYNEFPEPIK-LDKNERAKASAESCSC  207 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCC------------------
T ss_pred             HHHHHHHHHHHHHhccccccccCCCcccc-CCcccccccCCCCCCC
Confidence            999999999987754321     133333 3332333 67778877

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=7.5e-35  Score=205.38  Aligned_cols=168  Identities=71%  Similarity=1.081  Sum_probs=154.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ++.+.+||+++|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   81 (170)
T 1r2q_A            2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA   81 (170)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence            45678999999999999999999999988887778888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +++|+|++++.++..+..|+..+.....++.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (170)
T 1r2q_A           82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998887667899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHhccc
Q 029029          166 EIAKRLPR  173 (200)
Q Consensus       166 ~l~~~~~~  173 (200)
                      +|.+.+.+
T Consensus       162 ~i~~~~~~  169 (170)
T 1r2q_A          162 AIAKKLPK  169 (170)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHHHhh
Confidence            99998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=214.45  Aligned_cols=193  Identities=28%  Similarity=0.489  Sum_probs=150.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....++|+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            45679999999999999999999998887777777766554 45566788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      ++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  169 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  169 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999888764 35899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHhccccCCCCCCC-CceeccCCCCCCCCCCCCC
Q 029029          166 EIAKRLPRVQPAPNPS-GMVLMDRPGERTASASCCS  200 (200)
Q Consensus       166 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~  200 (200)
                      +|.+.+.++.....+. ......++.....+++||.
T Consensus       170 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Cc~  205 (206)
T 2bov_A          170 DLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCCI  205 (206)
T ss_dssp             HHHHHHHHHHHHHC----------------------
T ss_pred             HHHHHHHHccccccccccCcccccchhhccccceec
Confidence            9999987753222211 1112333445555667763

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.5e-34  Score=202.86  Aligned_cols=168  Identities=50%  Similarity=0.841  Sum_probs=154.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+.....++.+.++........+....+.+|||||.+.+...+..++..+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            34678999999999999999999999998888888888888888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +++|+|++++.++..+..|+..+.....+..|+++|+||+|+.+.+++..++...+++..+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999887778899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHhccc
Q 029029          166 EIAKRLPR  173 (200)
Q Consensus       166 ~l~~~~~~  173 (200)
                      +|.+.+.+
T Consensus       162 ~i~~~i~~  169 (170)
T 1z0j_A          162 EISRRIPS  169 (170)
T ss_dssp             HHHHHCCC
T ss_pred             HHHHHHhc
Confidence            99998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.8e-35  Score=211.30  Aligned_cols=170  Identities=39%  Similarity=0.706  Sum_probs=155.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+++|||||++.+...+..++..+|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            34567999999999999999999999988887788888888888888889989999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  181 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  181 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHhccccC
Q 029029          166 EIAKRLPRVQ  175 (200)
Q Consensus       166 ~l~~~~~~~~  175 (200)
                      +|.+.+.+..
T Consensus       182 ~l~~~i~~~~  191 (201)
T 2ew1_A          182 DLACRLISEA  191 (201)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=207.15  Aligned_cols=173  Identities=41%  Similarity=0.671  Sum_probs=158.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            35679999999999999999999999888888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887778999999999999888888889999999999999999999999999999999


Q ss_pred             HHHhccccCCCCC
Q 029029          167 IAKRLPRVQPAPN  179 (200)
Q Consensus       167 l~~~~~~~~~~~~  179 (200)
                      |.+.+.+..+...
T Consensus       173 l~~~i~~~~~~~~  185 (196)
T 3tkl_A          173 MAAEIKKRMGPGA  185 (196)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHhcccc
Confidence            9999988766443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.2e-35  Score=211.62  Aligned_cols=176  Identities=32%  Similarity=0.429  Sum_probs=147.0

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA   83 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   83 (200)
                      |+.....++|+|+|++|+|||||+++|+++.+...+.++.+.++ ......++..+.+.+|||||++.+...+..++..+
T Consensus         2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   80 (199)
T 2gf0_A            2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG   80 (199)
T ss_dssp             ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred             CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence            45566789999999999999999999998887766666665444 34556788889999999999999998999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029           84 AAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      |++++|||++++.+++.+..|+..+....  ..+.|+++|+||+|+.+ +....++...++..++++++++||++|.|++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (199)
T 2gf0_A           81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVK  159 (199)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence            99999999999999998888887776643  24789999999999975 5567788888999999999999999999999


Q ss_pred             HHHHHHHHhccccCCCCCCC
Q 029029          162 DIFYEIAKRLPRVQPAPNPS  181 (200)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~  181 (200)
                      ++|++|.+.+..+.....+.
T Consensus       160 ~l~~~l~~~~~~~~~~~~~~  179 (199)
T 2gf0_A          160 ELFQELLTLETRRNMSLNID  179 (199)
T ss_dssp             HHHHHHHHHCSSSCEECC--
T ss_pred             HHHHHHHHHHhhhhcccccc
Confidence            99999999988776544443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2.4e-34  Score=204.53  Aligned_cols=168  Identities=44%  Similarity=0.755  Sum_probs=153.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+|||||++.+...+..++..+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            44668999999999999999999999988887778888888888888888899999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHhccc
Q 029029          166 EIAKRLPR  173 (200)
Q Consensus       166 ~l~~~~~~  173 (200)
                      +|.+.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=8.9e-35  Score=211.23  Aligned_cols=171  Identities=41%  Similarity=0.662  Sum_probs=147.5

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            34567999999999999999999999888877777888877878888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIF  164 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~  164 (200)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++ +++++||++|.|++++|
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887667899999999999987777888899999999999 99999999999999999


Q ss_pred             HHHHHhccccCC
Q 029029          165 YEIAKRLPRVQP  176 (200)
Q Consensus       165 ~~l~~~~~~~~~  176 (200)
                      ++|.+.+.+...
T Consensus       185 ~~l~~~i~~~~~  196 (201)
T 2hup_A          185 LRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            999999887654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.4e-34  Score=202.03  Aligned_cols=165  Identities=56%  Similarity=0.920  Sum_probs=150.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +.+||+++|++|+|||||+++|+++.+.....++.+.++......+++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            47899999999999999999999988887788888888888888888999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC---CCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA---RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+.+.   +.+..++...+++..+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998876678999999999999765   56778888999999999999999999999999999


Q ss_pred             HHHHhccc
Q 029029          166 EIAKRLPR  173 (200)
Q Consensus       166 ~l~~~~~~  173 (200)
                      +|.+.+.+
T Consensus       162 ~l~~~i~~  169 (170)
T 1ek0_A          162 GIGEKIPL  169 (170)
T ss_dssp             HHHTTSCC
T ss_pred             HHHHHHhh
Confidence            99987753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.5e-34  Score=207.10  Aligned_cols=170  Identities=42%  Similarity=0.740  Sum_probs=151.5

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+++|||||++.+...+..++..+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            34467899999999999999999999998887777778888888888888888999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      ++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|++++|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988766789999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHhcccc
Q 029029          165 YEIAKRLPRV  174 (200)
Q Consensus       165 ~~l~~~~~~~  174 (200)
                      ++|.+.+.++
T Consensus       176 ~~l~~~i~~~  185 (191)
T 2a5j_A          176 INTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-34  Score=212.71  Aligned_cols=169  Identities=43%  Similarity=0.733  Sum_probs=146.2

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35679999999999999999999999888777778888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||+++.|++++|++
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHhccccC
Q 029029          167 IAKRLPRVQ  175 (200)
Q Consensus       167 l~~~~~~~~  175 (200)
                      |.+.+.+..
T Consensus       170 l~~~i~~~~  178 (223)
T 3cpj_B          170 LINTIYQKV  178 (223)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHHHh
Confidence            999887653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-34  Score=208.00  Aligned_cols=169  Identities=52%  Similarity=0.841  Sum_probs=153.4

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++....+.+|||||++.+...+..++..+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            36689999999999999999999999888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|++++|++
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG  179 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998876678999999999999876778888999999999999999999999999999999


Q ss_pred             HHHhccccC
Q 029029          167 IAKRLPRVQ  175 (200)
Q Consensus       167 l~~~~~~~~  175 (200)
                      |.+.+.+..
T Consensus       180 l~~~i~~~~  188 (192)
T 2fg5_A          180 ISRQIPPLD  188 (192)
T ss_dssp             HHHTCC---
T ss_pred             HHHHHHhhC
Confidence            999886543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.1e-34  Score=204.70  Aligned_cols=168  Identities=40%  Similarity=0.743  Sum_probs=145.0

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            34678999999999999999999999988877777888888877788888889999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999888776556789999999999987777888899999999999999999999999999999


Q ss_pred             HHHHhccc
Q 029029          166 EIAKRLPR  173 (200)
Q Consensus       166 ~l~~~~~~  173 (200)
                      +|.+.+.+
T Consensus       162 ~l~~~~~~  169 (170)
T 1z08_A          162 DLCKRMIE  169 (170)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=4.7e-34  Score=205.30  Aligned_cols=168  Identities=36%  Similarity=0.628  Sum_probs=153.7

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            35679999999999999999999999888777778888888888888888899999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHhcccc
Q 029029          167 IAKRLPRV  174 (200)
Q Consensus       167 l~~~~~~~  174 (200)
                      |.+.+.+.
T Consensus       179 l~~~i~~~  186 (189)
T 2gf9_A          179 LVDVICEK  186 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=3.2e-34  Score=203.87  Aligned_cols=170  Identities=42%  Similarity=0.746  Sum_probs=151.9

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      .+..+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+|||||++.+...+..++..+|
T Consensus         9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   88 (179)
T 2y8e_A            9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST   88 (179)
T ss_dssp             ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred             cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence            34456799999999999999999999988888777888888888888888998999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      ++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  168 (179)
T 2y8e_A           89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF  168 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887655789999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHhcccc
Q 029029          165 YEIAKRLPRV  174 (200)
Q Consensus       165 ~~l~~~~~~~  174 (200)
                      ++|.+.+...
T Consensus       169 ~~l~~~~~~~  178 (179)
T 2y8e_A          169 RRVAAALPGM  178 (179)
T ss_dssp             HHHHHTCC--
T ss_pred             HHHHHHHhhc
Confidence            9999987653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=9.8e-35  Score=207.63  Aligned_cols=169  Identities=37%  Similarity=0.687  Sum_probs=125.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+|+|++|+|||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            35689999999999999999999998877767777888777777888888899999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999877778888999999999999999999999999999999


Q ss_pred             HHHhccccC
Q 029029          167 IAKRLPRVQ  175 (200)
Q Consensus       167 l~~~~~~~~  175 (200)
                      |.+.+.+..
T Consensus       165 l~~~i~~~~  173 (183)
T 2fu5_C          165 LARDIKAKM  173 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.9e-34  Score=202.52  Aligned_cols=172  Identities=41%  Similarity=0.681  Sum_probs=145.5

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG   82 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   82 (200)
                      .....+.+||+|+|++|+|||||+++|+++.+. ..+.++.+.++.......++..+.+++||+||++.+...+..++..
T Consensus         4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   83 (180)
T 2g6b_A            4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD   83 (180)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred             cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence            345577899999999999999999999988774 3566777778777777888989999999999999999999999999


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      +|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++.++++++++||+++.|+++
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (180)
T 2g6b_A           84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  163 (180)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999998887667899999999999988777888889999999999999999999999999


Q ss_pred             HHHHHHHhccccC
Q 029029          163 IFYEIAKRLPRVQ  175 (200)
Q Consensus       163 ~~~~l~~~~~~~~  175 (200)
                      +|++|.+.+.+..
T Consensus       164 l~~~l~~~~~~~~  176 (180)
T 2g6b_A          164 AFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=5.5e-34  Score=204.16  Aligned_cols=169  Identities=40%  Similarity=0.676  Sum_probs=154.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            45689999999999999999999999888877778888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999988876678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHhccccC
Q 029029          167 IAKRLPRVQ  175 (200)
Q Consensus       167 l~~~~~~~~  175 (200)
                      +.+.+.++.
T Consensus       167 l~~~~~~~~  175 (186)
T 2bme_A          167 CARKILNKI  175 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=7.1e-34  Score=202.42  Aligned_cols=173  Identities=28%  Similarity=0.489  Sum_probs=151.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .....+||+|+|++|+|||||+++|+++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            3456899999999999999999999998887777777766654 566778888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      +++|+|++++.++..+..|+..+.. ....+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            9999999999999999999988844 345688999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHhccccCCCCC
Q 029029          165 YEIAKRLPRVQPAPN  179 (200)
Q Consensus       165 ~~l~~~~~~~~~~~~  179 (200)
                      ++|.+.+.+......
T Consensus       164 ~~l~~~~~~~~~~~~  178 (181)
T 2fn4_A          164 EQLVRAVRKYQEQEL  178 (181)
T ss_dssp             HHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHhhccCC
Confidence            999999987665443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=6.2e-34  Score=203.10  Aligned_cols=170  Identities=32%  Similarity=0.463  Sum_probs=150.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++ ......++..+.+++||+||++.+...+..++..+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            45689999999999999999999998888888888887776 66777888899999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      ++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999998886653 35789999999999988888899999999999999999999999999999999


Q ss_pred             HHHHhccccCCC
Q 029029          166 EIAKRLPRVQPA  177 (200)
Q Consensus       166 ~l~~~~~~~~~~  177 (200)
                      +|.+.+....+.
T Consensus       162 ~l~~~~~~~~~~  173 (181)
T 3t5g_A          162 RIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHTC---
T ss_pred             HHHHHHHHhcCC
Confidence            999999887653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.4e-34  Score=204.56  Aligned_cols=169  Identities=40%  Similarity=0.715  Sum_probs=154.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +..+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++....+.+|||||++.+...+..++..+|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            44668999999999999999999999988877777888888888888888899999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|+
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  180 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE  180 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877667899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHhcccc
Q 029029          166 EIAKRLPRV  174 (200)
Q Consensus       166 ~l~~~~~~~  174 (200)
                      +|.+.+.+.
T Consensus       181 ~l~~~i~~~  189 (193)
T 2oil_A          181 TVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-33  Score=205.42  Aligned_cols=169  Identities=34%  Similarity=0.593  Sum_probs=154.2

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +....+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+|||||++.+...+..++..+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            34568999999999999999999999888877777888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  163 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999988777888899999999999999999999999999999


Q ss_pred             HHHHhcccc
Q 029029          166 EIAKRLPRV  174 (200)
Q Consensus       166 ~l~~~~~~~  174 (200)
                      +|.+.+.+.
T Consensus       164 ~l~~~i~~~  172 (203)
T 1zbd_A          164 RLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888664

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.4e-33  Score=201.65  Aligned_cols=168  Identities=30%  Similarity=0.511  Sum_probs=150.9

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            3456789999999999999999999998888877777777666 667778888999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCC-CCCCHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK-TATNVND  162 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~  162 (200)
                      ++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..+++.++++++++||+ ++.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            999999999999999999999888663 44688999999999998888899999999999999999999999 9999999


Q ss_pred             HHHHHHHhccc
Q 029029          163 IFYEIAKRLPR  173 (200)
Q Consensus       163 ~~~~l~~~~~~  173 (200)
                      +|++|.+.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=6.5e-34  Score=200.33  Aligned_cols=165  Identities=36%  Similarity=0.631  Sum_probs=150.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|++|+|||||+++|+++.+...+.++.+.++.......++....+.+||+||++.+...+..++..+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999998888777888888888888888888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999998887764 678999999999998777788888999999999999999999999999999999


Q ss_pred             HHhccc
Q 029029          168 AKRLPR  173 (200)
Q Consensus       168 ~~~~~~  173 (200)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=5.1e-34  Score=202.84  Aligned_cols=170  Identities=32%  Similarity=0.483  Sum_probs=148.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ...+.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++ ....+++|||||++.+...+..++.++|
T Consensus         2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   81 (178)
T 2hxs_A            2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ   81 (178)
T ss_dssp             CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence            456789999999999999999999998887766677777777777887776 6789999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCe-EEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGN--PNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      ++|+|+|++++.+++.+..|+..+.....  ...| +++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  161 (178)
T 2hxs_A           82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF  161 (178)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            99999999999999999999888876421  2344 89999999998777788888999999999999999999999999


Q ss_pred             HHHHHHHHhccccC
Q 029029          162 DIFYEIAKRLPRVQ  175 (200)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (200)
                      ++|++|.+.+.+..
T Consensus       162 ~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          162 LCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999886654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=8.1e-34  Score=200.18  Aligned_cols=165  Identities=42%  Similarity=0.746  Sum_probs=144.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999988877777888877877788888888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....++...+++.++++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998876678999999999999 4456778888999999999999999999999999999999


Q ss_pred             Hhcccc
Q 029029          169 KRLPRV  174 (200)
Q Consensus       169 ~~~~~~  174 (200)
                      +.+.++
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.1e-35  Score=210.73  Aligned_cols=170  Identities=34%  Similarity=0.587  Sum_probs=156.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            45689999999999999999999998888777778888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER  179 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998877678999999999999887888899999999999999999999999999999999


Q ss_pred             HHHhccccCC
Q 029029          167 IAKRLPRVQP  176 (200)
Q Consensus       167 l~~~~~~~~~  176 (200)
                      |.+.+.+..+
T Consensus       180 l~~~i~~~~~  189 (191)
T 3dz8_A          180 LVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhcc
Confidence            9998876644

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=200.58  Aligned_cols=170  Identities=38%  Similarity=0.654  Sum_probs=152.2

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .....+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            34568999999999999999999999888877778888888888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999999987763 5799999999999988778888899999999999999999999999999999


Q ss_pred             HHHHhccccCC
Q 029029          166 EIAKRLPRVQP  176 (200)
Q Consensus       166 ~l~~~~~~~~~  176 (200)
                      +|.+.+.+...
T Consensus       164 ~l~~~~~~~~~  174 (181)
T 3tw8_B          164 CITELVLRAKK  174 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99998876543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.6e-34  Score=207.05  Aligned_cols=169  Identities=33%  Similarity=0.577  Sum_probs=139.6

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+.+||+|+|++|+|||||+++|+++.+.....++.+.++......+++....+.+|||||++.+...+..++..+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            34466899999999999999999999998887777788888888888888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc------CCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL------DARKVTAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                      ++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.      ..+.+..++...+++..+++++++||++|.
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            99999999999999999999999888766789999999999996      345677888899999999999999999999


Q ss_pred             CHHHHHHHHHHhccc
Q 029029          159 NVNDIFYEIAKRLPR  173 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~  173 (200)
                      |++++|++|.+.+.+
T Consensus       183 gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          183 NIVEAVLHLAREVKK  197 (199)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=206.54  Aligned_cols=169  Identities=41%  Similarity=0.695  Sum_probs=144.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            46689999999999999999999998887777778888788888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|++++|++
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHhccccC
Q 029029          167 IAKRLPRVQ  175 (200)
Q Consensus       167 l~~~~~~~~  175 (200)
                      |.+.+..+.
T Consensus       182 l~~~i~~~~  190 (200)
T 2o52_A          182 CARTILNKI  190 (200)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.2e-33  Score=199.36  Aligned_cols=169  Identities=37%  Similarity=0.621  Sum_probs=147.4

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+.+||+|+|++|+|||||+++|+++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|
T Consensus         2 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (177)
T 1wms_A            2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD   81 (177)
T ss_dssp             CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred             CCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence            45677899999999999999999999998887777888888888888888998999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCCCC
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTATN  159 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  159 (200)
                      ++++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+. .+....+++..+++ ..+++++++||++|.|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (177)
T 1wms_A           82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN  160 (177)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            99999999999999999999988876533    678999999999997 45677888888887 5678999999999999


Q ss_pred             HHHHHHHHHHhcccc
Q 029029          160 VNDIFYEIAKRLPRV  174 (200)
Q Consensus       160 i~~~~~~l~~~~~~~  174 (200)
                      ++++|+++.+.+.+.
T Consensus       161 i~~l~~~l~~~~~~~  175 (177)
T 1wms_A          161 VAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.6e-34  Score=205.56  Aligned_cols=168  Identities=34%  Similarity=0.654  Sum_probs=145.6

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .....+||+|+|.+|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            34668999999999999999999999888777777888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~  164 (200)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++.. +++++++||++|.|++++|
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  181 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  181 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999999988876678999999999999877778888888888874 7899999999999999999


Q ss_pred             HHHHHhccc
Q 029029          165 YEIAKRLPR  173 (200)
Q Consensus       165 ~~l~~~~~~  173 (200)
                      ++|.+.+.+
T Consensus       182 ~~l~~~i~~  190 (192)
T 2il1_A          182 LKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.5e-33  Score=202.66  Aligned_cols=168  Identities=36%  Similarity=0.638  Sum_probs=147.5

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAA   84 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d   84 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+.+|||||++.+. ..+..++..+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            34568999999999999999999999988887788888888888888888889999999999999888 88888999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC---CCH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA---TNV  160 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i  160 (200)
                      ++|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.+++.++++++++||+++   .|+
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i  175 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV  175 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence            9999999999999999999999887764 468999999999999877778888899999999999999999999   999


Q ss_pred             HHHHHHHHHhccc
Q 029029          161 NDIFYEIAKRLPR  173 (200)
Q Consensus       161 ~~~~~~l~~~~~~  173 (200)
                      +++|++|.+.+.+
T Consensus       176 ~~l~~~l~~~i~~  188 (189)
T 1z06_A          176 EAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4.5e-33  Score=200.94  Aligned_cols=171  Identities=27%  Similarity=0.479  Sum_probs=148.9

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+.+||+|+|++|+|||||+++|+++.+...+.++.+..+. .....++..+.+++|||||++.+...+..++.++|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            34567899999999999999999999999887777777776654 45667888999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC--CCCCHHHHHHHHHHcCCc-EEEecCCCCCCH
Q 029029           85 AAIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA--RKVTAEEAQAYAQENGLF-FMETSAKTATNV  160 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  160 (200)
                      ++|+|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+.+.  +.+..+++..+++.+++. ++++||++|.|+
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL  175 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence            99999999999999997 7788888765 467999999999999753  567888999999999998 999999999999


Q ss_pred             HHHHHHHHHhccccCCC
Q 029029          161 NDIFYEIAKRLPRVQPA  177 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~~~  177 (200)
                      +++|++|.+.+....+.
T Consensus       176 ~~l~~~l~~~i~~~~~~  192 (194)
T 3reg_A          176 NEVFEKSVDCIFSNKPV  192 (194)
T ss_dssp             HHHHHHHHHHHHCSCC-
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999998877653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=202.77  Aligned_cols=167  Identities=28%  Similarity=0.434  Sum_probs=142.4

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      .+..+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+++|||+|++.+... ..++..+|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            4456789999999999999999999999888877778877655 455677888999999999999988775 67889999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC-CCCCCH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA-KTATNV  160 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i  160 (200)
                      ++|+|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++|| ++|.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            9999999999999999999998887753   257899999999999877788889999999999999999999 899999


Q ss_pred             HHHHHHHHHhccc
Q 029029          161 NDIFYEIAKRLPR  173 (200)
Q Consensus       161 ~~~~~~l~~~~~~  173 (200)
                      +++|++|++.+.+
T Consensus       174 ~~lf~~l~~~i~~  186 (187)
T 3c5c_A          174 QHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=204.78  Aligned_cols=171  Identities=25%  Similarity=0.305  Sum_probs=144.1

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAA   84 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d   84 (200)
                      .....+||+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..++..+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            345689999999999999999999975443333445556666677778889999999999999987664 6777889999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI  163 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (200)
                      ++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999998877543 57999999999999877778888899999999999999999999999999


Q ss_pred             HHHHHHhccccCC
Q 029029          164 FYEIAKRLPRVQP  176 (200)
Q Consensus       164 ~~~l~~~~~~~~~  176 (200)
                      |+++++.+.....
T Consensus       179 f~~l~~~i~~~~~  191 (195)
T 3cbq_A          179 FEGAVRQIRLRRG  191 (195)
T ss_dssp             HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcC
Confidence            9999998876544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=9.6e-34  Score=207.18  Aligned_cols=172  Identities=30%  Similarity=0.508  Sum_probs=144.5

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      +...+.+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   82 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD   82 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence            3445789999999999999999999999888777777776554 445667788899999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCC--------CCHHHHHHHHHHcCC-cEEEecC
Q 029029           85 AAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK--------VTAEEAQAYAQENGL-FFMETSA  154 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa  154 (200)
                      ++|+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.+.        +..+++..+++.++. +++++||
T Consensus        83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999986 8998887763 5799999999999976543        367888889988886 8999999


Q ss_pred             CCCCCHHHHHHHHHHhccccCCCC
Q 029029          155 KTATNVNDIFYEIAKRLPRVQPAP  178 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~~~~~  178 (200)
                      ++|.|++++|++|.+.+.......
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC----
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhc
Confidence            999999999999999988765443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.8e-33  Score=202.47  Aligned_cols=170  Identities=31%  Similarity=0.571  Sum_probs=150.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF-SQTLAVNDA---------TVKFEIWDTAGQERYHSL   75 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~   75 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+.....++.+.++. ......++.         ...+.+||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4567899999999999999999999998887777788877776 555555655         789999999999999999


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                      +..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999999887654 68999999999999877778888899999999999999999


Q ss_pred             CCCCCHHHHHHHHHHhccccC
Q 029029          155 KTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +++.|++++|++|.+.+.++.
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999887654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=198.57  Aligned_cols=168  Identities=31%  Similarity=0.411  Sum_probs=137.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--cccchhhhhcCCcE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLAPMYYRGAAA   85 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   85 (200)
                      .+.+||+|+|++|+|||||+++|.++.+.. ..++.+.+.....+.+++..+.+.+||+||++.  +......++..+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            457999999999999999999999766543 345677777778888889899999999999987  55666778899999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887753 3578999999999998777788888889999999999999999999999999


Q ss_pred             HHHHHhccccCC
Q 029029          165 YEIAKRLPRVQP  176 (200)
Q Consensus       165 ~~l~~~~~~~~~  176 (200)
                      ++|.+.+...+.
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999998876543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.2e-33  Score=201.29  Aligned_cols=168  Identities=32%  Similarity=0.562  Sum_probs=144.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ..++||+|+|++|+|||||+++|+++.+...+.++.+ +........++..+.+.+|||||++.+...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4689999999999999999999998887766666653 444566677888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ +....+.+..++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998887743 46899999999999974 556788899999999999999999999999999999


Q ss_pred             HHHhccccCCC
Q 029029          167 IAKRLPRVQPA  177 (200)
Q Consensus       167 l~~~~~~~~~~  177 (200)
                      |.+.+......
T Consensus       160 l~~~~~~~~~~  170 (189)
T 4dsu_A          160 LVREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhhh
Confidence            99999876543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.3e-33  Score=197.85  Aligned_cols=165  Identities=25%  Similarity=0.315  Sum_probs=133.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCcEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAAAAII   88 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   88 (200)
                      .+||+++|++|+|||||+++|.+........++.+.+.....+..++..+.+.+||+||++.+.. .+..++..+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999997666655556666777778888899999999999999988765 67777899999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877643 489999999999998778889999999999999999999999999999999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.1e-33  Score=205.90  Aligned_cols=171  Identities=26%  Similarity=0.442  Sum_probs=145.4

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      .....+||+|+|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..++..+|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            345689999999999999999999999988887788887665 4556677788999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEE
Q 029029           86 AIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFME  151 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  151 (200)
                      +|+|||+++++++.. +..|+..+.... ++.|+++|+||+|+.+.            +.+..+++..+++.+++ ++++
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 689999988874 68999999999999753            56888999999999999 9999


Q ss_pred             ecCCCCCC-HHHHHHHHHHhccccCCCC
Q 029029          152 TSAKTATN-VNDIFYEIAKRLPRVQPAP  178 (200)
Q Consensus       152 ~Sa~~~~~-i~~~~~~l~~~~~~~~~~~  178 (200)
                      +||++|.| ++++|+++.+.+.......
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred             eccCCCcccHHHHHHHHHHHHhccCcCC
Confidence            99999998 9999999999987765533

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=5.5e-33  Score=195.32  Aligned_cols=164  Identities=32%  Similarity=0.558  Sum_probs=142.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +.+||+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            579999999999999999999998887766666665544 3455678888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |+|++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877543 589999999999998777788889999999999999999999999999999999


Q ss_pred             HHhccc
Q 029029          168 AKRLPR  173 (200)
Q Consensus       168 ~~~~~~  173 (200)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.8e-33  Score=199.17  Aligned_cols=168  Identities=38%  Similarity=0.669  Sum_probs=151.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            46799999999999999999999998888778888888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+. .+.+..++...+++.++++++++||+++.|++++|++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            9999999999999999998887653 3578999999999994 3557788889999999999999999999999999999


Q ss_pred             HHHhccccCC
Q 029029          167 IAKRLPRVQP  176 (200)
Q Consensus       167 l~~~~~~~~~  176 (200)
                      |.+.+.....
T Consensus       172 l~~~~~~~~~  181 (195)
T 1x3s_A          172 LVEKIIQTPG  181 (195)
T ss_dssp             HHHHHHTSGG
T ss_pred             HHHHHHhhhh
Confidence            9999876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=5.7e-33  Score=195.30  Aligned_cols=163  Identities=34%  Similarity=0.581  Sum_probs=143.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +++||+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            478999999999999999999999888777777776554 3556667788999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..+++.+ +++++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            99999999999999998887764 3468999999999999877778888899998887 789999999999999999999


Q ss_pred             HHHhcc
Q 029029          167 IAKRLP  172 (200)
Q Consensus       167 l~~~~~  172 (200)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=8.8e-33  Score=198.08  Aligned_cols=164  Identities=20%  Similarity=0.382  Sum_probs=142.4

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      +.+.+.+||+|+|++|+|||||+++|+++.+...+.++.+  .+...+.+++..+.+++|||+|++.+.     ++..+|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            4557799999999999999999999999888776666632  345777888999999999999998766     778899


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCcc--CCCCCCHHHHHHHHHHcC-CcEEEecCCCCCCH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLL--DARKVTAEEAQAYAQENG-LFFMETSAKTATNV  160 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  160 (200)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.  ..+.+..+++..+++.++ ++++++||++|.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999987643 678999999999994  456788889999999987 89999999999999


Q ss_pred             HHHHHHHHHhccccC
Q 029029          161 NDIFYEIAKRLPRVQ  175 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (200)
                      +++|++|.+.+...+
T Consensus       168 ~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          168 ERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.9e-32  Score=198.59  Aligned_cols=165  Identities=48%  Similarity=0.811  Sum_probs=145.6

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeE----------------------------
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT----------------------------   58 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   58 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            4568999999999999999999999998887777888877777777666554                            


Q ss_pred             ---------EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           59 ---------VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        59 ---------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                               ..+.+|||||++.+...+..++..+|++|+|+|++++.++..+..|+..+....  +.|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence                     899999999999999999999999999999999999999999999999988763  389999999999 55


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      .+....+++..+++.++++++++||++|.|++++|++|.+.+.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            567788899999999999999999999999999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=5.4e-33  Score=195.43  Aligned_cols=163  Identities=27%  Similarity=0.378  Sum_probs=123.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      .+||+++|++|+|||||+++|.+... ....++.+.++ .....+++..+.+.+||++|++.+...+..++..+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999985443 33445555555 45667789999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999887753 46899999999999988888899999999999999999999999999999999999


Q ss_pred             Hhcccc
Q 029029          169 KRLPRV  174 (200)
Q Consensus       169 ~~~~~~  174 (200)
                      +.+...
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=203.97  Aligned_cols=170  Identities=31%  Similarity=0.464  Sum_probs=144.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++..+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            35689999999999999999999999888877777776665 55566667788999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      |+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+...+...+++..+++++++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999887653 35789999999999988888899999999999999999999999999999999


Q ss_pred             HHHHhccccCCC
Q 029029          166 EIAKRLPRVQPA  177 (200)
Q Consensus       166 ~l~~~~~~~~~~  177 (200)
                      +|.+.+.+....
T Consensus       180 ~l~~~i~~~~~~  191 (201)
T 3oes_A          180 KVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHhhhhh
Confidence            999998876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=6.9e-33  Score=194.63  Aligned_cols=164  Identities=37%  Similarity=0.567  Sum_probs=145.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +++||+++|++|+|||||+++|+++.+.....++.+.. .......++....+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            46899999999999999999999888877666666543 36667778888999999999999999899999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++...+++..+++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999988887653 3689999999999998777788888999999999999999999999999999999


Q ss_pred             HHhccc
Q 029029          168 AKRLPR  173 (200)
Q Consensus       168 ~~~~~~  173 (200)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            987753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-32  Score=200.23  Aligned_cols=166  Identities=41%  Similarity=0.742  Sum_probs=149.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...++|+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999988887777788888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....++...++..++++++++||+++.|++++|++|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999988876668999999999999 445677888889999999999999999999999999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      .+.+.+.
T Consensus       177 ~~~~~~~  183 (213)
T 3cph_A          177 AKLIQEK  183 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.3e-32  Score=196.90  Aligned_cols=169  Identities=31%  Similarity=0.539  Sum_probs=146.5

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            3446689999999999999999999998887766666665444 445667888899999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI  163 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (200)
                      ++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  171 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  171 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence            99999999999999999999988877543 57999999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHhcccc
Q 029029          164 FYEIAKRLPRV  174 (200)
Q Consensus       164 ~~~l~~~~~~~  174 (200)
                      |++|.+.+.+.
T Consensus       172 ~~~l~~~i~~~  182 (187)
T 2a9k_A          172 FFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=4.1e-33  Score=198.66  Aligned_cols=170  Identities=38%  Similarity=0.644  Sum_probs=134.3

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      +..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+..+ +....+.+||+||++.+...+..++..+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            34668999999999999999999999988877777888877777777776 56789999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEeCcCccC-CCCCCHHHHHHHHH-HcCCcEEEecCCCCC
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGN----PNMVMALAGNKADLLD-ARKVTAEEAQAYAQ-ENGLFFMETSAKTAT  158 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  158 (200)
                      ++|+|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+.+ .+.+..+++..+++ ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999988876532    6789999999999953 34567788888887 567899999999999


Q ss_pred             CHHHHHHHHHHhccccC
Q 029029          159 NVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~~~  175 (200)
                      |++++|++|.+.+.+++
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=199.36  Aligned_cols=168  Identities=36%  Similarity=0.525  Sum_probs=146.6

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..++..+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            45689999999999999999999999888777777776544 45567788899999999999988 77788889999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIF  164 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~  164 (200)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999998887743 3689999999999998777788889999999999999999999999 999999


Q ss_pred             HHHHHhccccCC
Q 029029          165 YEIAKRLPRVQP  176 (200)
Q Consensus       165 ~~l~~~~~~~~~  176 (200)
                      ++|.+.+.+..+
T Consensus       183 ~~l~~~i~~~~~  194 (196)
T 2atv_A          183 YELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHhhcc
Confidence            999998876543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.7e-32  Score=195.10  Aligned_cols=162  Identities=26%  Similarity=0.403  Sum_probs=136.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+++|++|+|||||+++|.++.+.. +.++.+..+ ...+.+++..+.+++|||+|++.     ..+++++|+
T Consensus         3 ~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~   75 (178)
T 2iwr_A            3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA   75 (178)
T ss_dssp             CCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence            34678999999999999999999999888765 666666443 56677788899999999999876     467889999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh---CCCCCeEEEEEeCcCcc--CCCCCCHHHHHHHHHHc-CCcEEEecCCCCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQ---GNPNMVMALAGNKADLL--DARKVTAEEAQAYAQEN-GLFFMETSAKTATN  159 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  159 (200)
                      +|+|||+++++++..+..|+..+...   ...+.|+++|+||+|+.  ..+.+..+++..+++.. +++++++||++|.|
T Consensus        76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN  155 (178)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence            99999999999999998876665543   23689999999999994  45567888888888876 68999999999999


Q ss_pred             HHHHHHHHHHhcccc
Q 029029          160 VNDIFYEIAKRLPRV  174 (200)
Q Consensus       160 i~~~~~~l~~~~~~~  174 (200)
                      ++++|+++.+.+...
T Consensus       156 i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          156 VDRVFQEVAQKVVTL  170 (178)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.4e-33  Score=204.93  Aligned_cols=170  Identities=34%  Similarity=0.577  Sum_probs=148.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe----------EEEEEEEeCCCccccccc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSL   75 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~   75 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++.          .+.+++|||||++.+...
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            3466899999999999999999999988877666677777766666666655          789999999999999999


Q ss_pred             hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029           76 APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                      +..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence            99999999999999999999999999999887766543 68999999999999877778888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHhccccC
Q 029029          155 KTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +++.|++++|++|.+.+.++.
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999887653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=5.9e-33  Score=203.81  Aligned_cols=177  Identities=28%  Similarity=0.481  Sum_probs=148.6

Q ss_pred             CCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhc
Q 029029            3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMYYR   81 (200)
Q Consensus         3 ~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~   81 (200)
                      ++......+||+|+|.+|+|||||+++|+++.+...+.++.+.+......... +..+.+.+|||||++.+...+..++.
T Consensus         4 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (218)
T 4djt_A            4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYI   83 (218)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred             CcccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhh
Confidence            34566778999999999999999999999888777777787777766666554 34489999999999999999999999


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029           82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      .+|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+....++...+++++++||++|.|++
T Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (218)
T 4djt_A           84 GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG  163 (218)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence            99999999999999999999999999888766678999999999998777788888889988899999999999999999


Q ss_pred             HHHHHHHHhccccCCCCC
Q 029029          162 DIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~  179 (200)
                      ++|++|.+.+........
T Consensus       164 ~l~~~l~~~~~~~~~~~~  181 (218)
T 4djt_A          164 LPFLHLARIFTGRPDLIF  181 (218)
T ss_dssp             HHHHHHHHHHHCCTTCCB
T ss_pred             HHHHHHHHHHhccccccc
Confidence            999999999987655443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=5.7e-32  Score=193.43  Aligned_cols=166  Identities=30%  Similarity=0.498  Sum_probs=144.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+++|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+++|||||++.+...+..++..+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4679999999999999999999998888776666665443 455677888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEec
Q 029029           88 IVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETS  153 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (200)
                      +|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+.            +.+..++...+++..+. +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999986 7888887763 48899999999999753            45677888889988887 899999


Q ss_pred             CCCCCCHHHHHHHHHHhccccC
Q 029029          154 AKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      |++|.|++++|+++.+.+.+..
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCccCHHHHHHHHHHHHhccc
Confidence            9999999999999999887554

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.5e-32  Score=195.16  Aligned_cols=165  Identities=30%  Similarity=0.495  Sum_probs=144.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            35689999999999999999999999888777777776554 44566677789999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEe
Q 029029           87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMET  152 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  152 (200)
                      |+|||+++++++..+. .|+..+.... ++.|+++|+||+|+.+.            +.+..+++..+++.+++ +++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999986 7888888763 57899999999999753            35778889999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHHhccc
Q 029029          153 SAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ||++|.|++++|++|.+.+..
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999987753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-32  Score=192.27  Aligned_cols=165  Identities=33%  Similarity=0.462  Sum_probs=142.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+++|++|+|||||+++|+++.+...+.++.+.++ ......++....+.+|||||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999998877666666665444 3445667888999999999999999889999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|++++.+++.+..|+..+....  ..+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999998888888777643  257899999999999877778888888999999999999999999999999999


Q ss_pred             HHHhcccc
Q 029029          167 IAKRLPRV  174 (200)
Q Consensus       167 l~~~~~~~  174 (200)
                      |.+.+..+
T Consensus       161 l~~~~~~~  168 (172)
T 2erx_A          161 LLNLEKRR  168 (172)
T ss_dssp             HHHTCCSS
T ss_pred             HHHHHhhh
Confidence            99987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=4.4e-32  Score=196.72  Aligned_cols=169  Identities=27%  Similarity=0.455  Sum_probs=138.2

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            346789999999999999999999998877766666665443 4566778888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcCC-cEEE
Q 029029           86 AIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENGL-FFME  151 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  151 (200)
                      +|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+            .+.+..+++..+++.++. ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999986 7988887763 5899999999999975            245778888999988887 8999


Q ss_pred             ecCCCCCCHHHHHHHHHHhccccCC
Q 029029          152 TSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      +||++|.|++++|++|.+.+.+...
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999998876543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.8e-33  Score=203.73  Aligned_cols=168  Identities=28%  Similarity=0.467  Sum_probs=112.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhC--cccCcccCcceeeEEEEEEEECCe--EEEEEEEeCCCccccccchhhhhcCC
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAVNDA--TVKFEIWDTAGQERYHSLAPMYYRGA   83 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   83 (200)
                      ...+||+|+|++|+|||||+++|+++  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+...+..++..+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45789999999999999999999987  666666777776677777777776  89999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCcCccC-CCCCCHHHHHHHHHHcCCcEEEecCCC-CC
Q 029029           84 AAAIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLD-ARKVTAEEAQAYAQENGLFFMETSAKT-AT  158 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  158 (200)
                      |++|+|+|++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+++..+++.++++++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988755   6899999999999987 677888899999999999999999999 99


Q ss_pred             CHHHHHHHHHHhccccC
Q 029029          159 NVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~~~  175 (200)
                      |++++|++|.+.+.+..
T Consensus       178 gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNY  194 (208)
T ss_dssp             --CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=4.3e-32  Score=194.30  Aligned_cols=165  Identities=28%  Similarity=0.519  Sum_probs=142.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+|+|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            46689999999999999999999999888777777776555 34566778889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEe
Q 029029           87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMET  152 (200)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  152 (200)
                      |+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..+++..+++.++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 78888887753 57999999999999742            4577888999998887 689999


Q ss_pred             cCC-CCCCHHHHHHHHHHhccc
Q 029029          153 SAK-TATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       153 Sa~-~~~~i~~~~~~l~~~~~~  173 (200)
                      ||+ ++.|++++|+++.+.+..
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999987653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.4e-31  Score=192.29  Aligned_cols=169  Identities=30%  Similarity=0.537  Sum_probs=134.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +..+.+||+++|.+|+|||||+++|+++.+.....++.+..+ ......++..+.+.+||+||++.+...+..++..+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            346789999999999999999999998877666666554433 4566778888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      +++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ +....+++.++++..+++++++||+++.|++++|
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999998887653 25789999999999876 5567888999999999999999999999999999


Q ss_pred             HHHHHhccccCC
Q 029029          165 YEIAKRLPRVQP  176 (200)
Q Consensus       165 ~~l~~~~~~~~~  176 (200)
                      ++|.+.+.+.+.
T Consensus       175 ~~l~~~~~~~~~  186 (190)
T 3con_A          175 YTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999998876554

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.7e-32  Score=198.05  Aligned_cols=170  Identities=28%  Similarity=0.396  Sum_probs=139.4

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCC
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGA   83 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~   83 (200)
                      .....+||+|+|.+|+|||||+++|++... .....++.|.++....+.+++..+.+.+|||+|.+. +......++..+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            345679999999999999999999995432 122234466677777788899999999999999876 445566678899


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           84 AAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      |++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988876542 35799999999999987777888888888889999999999999999999


Q ss_pred             HHHHHHHhccccC
Q 029029          163 IFYEIAKRLPRVQ  175 (200)
Q Consensus       163 ~~~~l~~~~~~~~  175 (200)
                      +|++|++.+....
T Consensus       193 lf~~l~~~i~~~~  205 (211)
T 2g3y_A          193 LFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999886543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2e-31  Score=193.47  Aligned_cols=165  Identities=32%  Similarity=0.530  Sum_probs=143.4

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      +....+||+|+|.+|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+|||||++.+...+..++..+|+
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            3467899999999999999999999998887777777766654 346678888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEE
Q 029029           86 AIIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFME  151 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  151 (200)
                      +|+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..++...+++..+. ++++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            9999999999999998 67888877753 57899999999999764            45777888899999888 8999


Q ss_pred             ecCCCCCCHHHHHHHHHHhcc
Q 029029          152 TSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      +||++|.|++++|++|.+.+.
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=5.7e-32  Score=198.24  Aligned_cols=168  Identities=32%  Similarity=0.530  Sum_probs=124.4

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+...+.++.+.. ......+++..+.+.+|||||++.+...+..++..+|++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  109 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL  109 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence            3567999999999999999999999877766666666443 345567788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcCC-cEEEe
Q 029029           87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENGL-FFMET  152 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  152 (200)
                      |+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..+++..++ +++++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            9999999999999986 7888887753 678999999999997642            5677888999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHHhccccCC
Q 029029          153 SAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      ||++|.|++++|++|.+.+.+...
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999999998876543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=8.9e-32  Score=195.80  Aligned_cols=167  Identities=29%  Similarity=0.483  Sum_probs=138.6

Q ss_pred             CCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q 029029            3 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG   82 (200)
Q Consensus         3 ~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   82 (200)
                      ......+.+||+++|++|+|||||+++|+++.+...+.++.+ .........++..+.+.+|||||++.+...+..++..
T Consensus        23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  101 (204)
T 4gzl_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ  101 (204)
T ss_dssp             -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc
Confidence            344557789999999999999999999998888776666664 3345566677888999999999999999999999999


Q ss_pred             CcEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcCC-c
Q 029029           83 AAAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENGL-F  148 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~  148 (200)
                      +|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..++...+++..+. +
T Consensus       102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            99999999999999999986 7888888764 689999999999997643            2677888899998887 5


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhc
Q 029029          149 FMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ++++||++|.|++++|++|.+.+
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999865

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=209.18  Aligned_cols=168  Identities=42%  Similarity=0.699  Sum_probs=142.3

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+|+|++|+|||||+++|+++.+.....++.+.++....+..++..+.+.+|||||++.+...+..++..+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            35679999999999999999999998877777777888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998776678999999999999877777767788889999999999999999999999999


Q ss_pred             HHHhcccc
Q 029029          167 IAKRLPRV  174 (200)
Q Consensus       167 l~~~~~~~  174 (200)
                      |.+.+.+.
T Consensus       190 l~~~l~~~  197 (199)
T 3l0i_B          190 MAAEIKKR  197 (199)
T ss_dssp             HTTTTTTT
T ss_pred             HHHHHHHh
Confidence            99887654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=3.6e-31  Score=185.56  Aligned_cols=163  Identities=32%  Similarity=0.580  Sum_probs=141.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +.+||+++|++|+|||||+++|.++.+.....++.+.. .......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            46899999999999999999999887766666665433 34556678888999999999999999899999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ +....++...+++.++++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887753 34799999999999876 4567788899999999999999999999999999999


Q ss_pred             HHhccc
Q 029029          168 AKRLPR  173 (200)
Q Consensus       168 ~~~~~~  173 (200)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-31  Score=193.26  Aligned_cols=165  Identities=30%  Similarity=0.522  Sum_probs=138.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ..++||+|+|.+|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+|||||++.+...+..++..+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            56889999999999999999999998887666666665543 34667888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEec
Q 029029           88 IVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETS  153 (200)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (200)
                      +|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..++...++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999988 67888877753 57899999999999754            45677888888888888 899999


Q ss_pred             CCCCCCHHHHHHHHHHhcccc
Q 029029          154 AKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~  174 (200)
                      |++|.|++++|++|.+.+...
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=9.8e-32  Score=195.78  Aligned_cols=165  Identities=28%  Similarity=0.519  Sum_probs=141.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ....+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            45689999999999999999999999888777777776655 34566678889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEe
Q 029029           87 IIVYDITNQASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMET  152 (200)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  152 (200)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..+++.++ ++++++
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 78988887753 57999999999999742            4577888999998887 689999


Q ss_pred             cCC-CCCCHHHHHHHHHHhccc
Q 029029          153 SAK-TATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       153 Sa~-~~~~i~~~~~~l~~~~~~  173 (200)
                      ||+ ++.|++++|+++.+.+..
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999987653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=2.1e-32  Score=195.13  Aligned_cols=166  Identities=31%  Similarity=0.546  Sum_probs=126.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+++|++|+|||||++++.++.+...+.++.+..+. .....++..+.+++|||||++.+...+..++.++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            3456899999999999999999999988876666666543332 223445667788999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCCC----------CCHHHHHHHHHHcCC-cEEEec
Q 029029           86 AIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDARK----------VTAEEAQAYAQENGL-FFMETS  153 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  153 (200)
                      +++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+.          +..+++..+++.++. +++++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  161 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS  161 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence            99999999999999986 7888887763 4789999999999976543          467788889988886 899999


Q ss_pred             CCCCCCHHHHHHHHHHhccc
Q 029029          154 AKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~  173 (200)
                      |++|.|++++|++|.+.+.+
T Consensus       162 a~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          162 SKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999987753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=4.1e-32  Score=199.80  Aligned_cols=169  Identities=31%  Similarity=0.564  Sum_probs=149.8

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ......+||+|+|.+|+|||||+++|+.+.+...+.++.+.+........++..+.+.+|||||++.+...+..++.++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            44567899999999999999999997778877778889999998989999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      ++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+....  .+...+++..+++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  166 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF  166 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999998864 57899999999999764332  24666778889999999999999999999


Q ss_pred             HHHHHhccccCC
Q 029029          165 YEIAKRLPRVQP  176 (200)
Q Consensus       165 ~~l~~~~~~~~~  176 (200)
                      ++|.+.+.....
T Consensus       167 ~~l~~~l~~~~~  178 (221)
T 3gj0_A          167 LWLARKLIGDPN  178 (221)
T ss_dssp             HHHHHHHHTCTT
T ss_pred             HHHHHHHHhCcc
Confidence            999999877644

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=2.7e-32  Score=196.86  Aligned_cols=169  Identities=22%  Similarity=0.286  Sum_probs=137.6

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcc-----------cCcceeeEEEEEE-EECCeEEEEEEEeCCCccc
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------ESTIGAAFFSQTL-AVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~   71 (200)
                      .......+||+|+|++|+|||||++.+. +.+...+           .++.+.++..... ..++..+.+++|||||++.
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            3456778999999999999999997776 4444332           2344444433333 5567788999999999999


Q ss_pred             cccchhhhhcCCcEEEEEEeCC------CHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc
Q 029029           72 YHSLAPMYYRGAAAAIIVYDIT------NQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN  145 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~  145 (200)
                      +...+..++.++|++|+|||++      +.+++..+..|+..+. ....+.|+++|+||+|+.+.  ...+++..+++.+
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~  163 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE  163 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence            9999999999999999999999      5567777778887773 23478999999999998653  7788899999999


Q ss_pred             CC-cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          146 GL-FFMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       146 ~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      ++ +++++||++|.|++++|++|.+.+.+...
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            99 99999999999999999999998876643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.98  E-value=9.9e-31  Score=188.61  Aligned_cols=167  Identities=28%  Similarity=0.396  Sum_probs=137.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCcE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAAA   85 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~   85 (200)
                      ...+||+++|++|+|||||+++|.+... .....++.+.++....+.+++..+.+.+|||+|.+. .......++..+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            3568999999999999999999986332 122224466677777788899999999999999876 45566778889999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      +++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf  163 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF  163 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence            999999999999999999988877653 3578999999999998767778888888888889999999999999999999


Q ss_pred             HHHHHhcccc
Q 029029          165 YEIAKRLPRV  174 (200)
Q Consensus       165 ~~l~~~~~~~  174 (200)
                      +++.+.+...
T Consensus       164 ~~l~~~~~~~  173 (192)
T 2cjw_A          164 EGIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=7.8e-30  Score=184.78  Aligned_cols=167  Identities=43%  Similarity=0.765  Sum_probs=148.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...++|+|+|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||++|++.++..+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999988887777788888877888888999999999999999999888889999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|+|..++.++..+..|+..+......+.|+++++||+|+.+.+....++++.++...++.++++||+++.+++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999888889888876655678999999999998777788888999999999999999999999999999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      .+.+.+.
T Consensus       163 ~~~~~~~  169 (199)
T 2f9l_A          163 LTEIYRI  169 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=3.9e-31  Score=191.18  Aligned_cols=166  Identities=19%  Similarity=0.301  Sum_probs=129.6

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA   83 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   83 (200)
                      +......||+|+|.+|+|||||+++|+++.+.. .+.++.+.....  +  +...+.+++|||||++.+...+..++..+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            445678999999999999999999999888776 667777744332  2  34567899999999999999999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--------CCCeEEEEEeCcCccCCCCCCHHHHHHH------HHHcCCcE
Q 029029           84 AAAIIVYDITNQASFERAKKWVQELQAQGN--------PNMVMALAGNKADLLDARKVTAEEAQAY------AQENGLFF  149 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~~~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~  149 (200)
                      |++|+|+|+++++++..+..|+..+.....        .+.|+++|+||+|+.+..  ..+++...      ++..++++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEE
Confidence            999999999999999999888888765411        378999999999997652  22222221      13467789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          150 METSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      +++||++|.|++++|++|.+.+.....
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=9.5e-31  Score=184.67  Aligned_cols=160  Identities=22%  Similarity=0.357  Sum_probs=127.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|+|||||+++|.++.+.. ..++.+..  ...+..+  ...+.+|||||++.+...+..++..+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            457999999999999999999999877643 44555533  3334444  578999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ...+.....     ...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999888887776542 2678999999999986542  223332222     2245679999999999999


Q ss_pred             HHHHHHHHhcccc
Q 029029          162 DIFYEIAKRLPRV  174 (200)
Q Consensus       162 ~~~~~l~~~~~~~  174 (200)
                      ++|++|.+.+.++
T Consensus       158 ~l~~~l~~~i~~~  170 (171)
T 1upt_A          158 EAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=3.9e-29  Score=180.06  Aligned_cols=164  Identities=43%  Similarity=0.768  Sum_probs=148.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+++||++|.+++...+..++..+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45689999999999999999999998887778888888888888889999999999999999998888889999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|+|..+..+++.+..|+..+......+.|+++++||.|+.+.+....+.++.++...++.++++||+++.+++++|++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l  186 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI  186 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999888889888776555678999999999998777778888999999999999999999999999999999


Q ss_pred             HHhc
Q 029029          168 AKRL  171 (200)
Q Consensus       168 ~~~~  171 (200)
                      .+.+
T Consensus       187 ~~~i  190 (191)
T 1oix_A          187 LTEI  190 (191)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=4.3e-31  Score=189.76  Aligned_cols=162  Identities=23%  Similarity=0.340  Sum_probs=129.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++..  +  ....+.+.+||+||++.+...+..++..+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            3568999999999999999999999888877777777766543  2  23457899999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNV  160 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  160 (200)
                      |+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++......     ..+++++++||++|.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            99999999999999988888876532 367899999999998653  22332222211     23457999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 029029          161 NDIFYEIAKRLPRV  174 (200)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (200)
                      +++|++|.+.+..+
T Consensus       173 ~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          173 DITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988664

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=3.6e-30  Score=186.49  Aligned_cols=157  Identities=18%  Similarity=0.233  Sum_probs=123.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|+|||||+++|.++.+. .+.++.+.+.  ..+.+++  ..+++|||||++.++..+..++..+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            55789999999999999999999976653 3555655543  3444554  78999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----------------cCCcE
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----------------NGLFF  149 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  149 (200)
                      +|+|+++++++..+..|+..+... ...++|+++|+||+|+.+  .+..+++..++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999999999888764 236799999999999865  4667777776542                 34579


Q ss_pred             EEecCCCCCCHHHHHHHHHHhc
Q 029029          150 METSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      +++||++|.|++++|++|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=9.1e-30  Score=183.01  Aligned_cols=163  Identities=21%  Similarity=0.311  Sum_probs=128.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCc-ccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ-FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ...+.+||+|+|.+|+|||||+++|.++. +...+.++.+  .....+..+  +..+.+|||||++.+...+..++..+|
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            34668999999999999999999999766 3555556655  333444444  378999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCC
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGN---PNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKT  156 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  156 (200)
                      ++|+|+|++++.++..+..|+..+.....   .+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++
T Consensus        93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            99999999999999999999888877533   57899999999999653  44555665553     2356899999999


Q ss_pred             CCCHHHHHHHHHHhcccc
Q 029029          157 ATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (200)
                      |.|++++|++|.+.+.+.
T Consensus       171 ~~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             TBTHHHHHHHHHHHC---
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            999999999999988653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.1e-29  Score=182.74  Aligned_cols=157  Identities=20%  Similarity=0.277  Sum_probs=127.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|+|||||+++|.++.+. .+.++.+..  ...+..++  ..+.+|||||++.++..+..++..+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            56789999999999999999999987754 355565543  34455554  78999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH------------cCCcEEEecC
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE------------NGLFFMETSA  154 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  154 (200)
                      +|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+  ....+++.+....            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999999998887664 236789999999999865  4556666665432            3457999999


Q ss_pred             CCCCCHHHHHHHHHHhc
Q 029029          155 KTATNVNDIFYEIAKRL  171 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~~  171 (200)
                      ++|.|++++|++|.+.+
T Consensus       174 ~~g~gi~~l~~~l~~~l  190 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQYI  190 (190)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CcCCCHHHHHHHHHhhC
Confidence            99999999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.7e-30  Score=184.05  Aligned_cols=165  Identities=20%  Similarity=0.324  Sum_probs=126.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+|+|++|+|||||+++|+++.+. .+.++.+....  .+..+  +..+++|||||++.+...+..++.++|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999977765 45566654432  33333  378999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999998887642 367999999999998653  34444444432     235689999999999999


Q ss_pred             HHHHHHHHhccccCCCCC
Q 029029          162 DIFYEIAKRLPRVQPAPN  179 (200)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~  179 (200)
                      ++|++|.+.+....+...
T Consensus       167 ~l~~~l~~~~~~~~~~~~  184 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLEHHH  184 (187)
T ss_dssp             HHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHHhhhhc
Confidence            999999998877655443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=9.8e-30  Score=182.11  Aligned_cols=160  Identities=21%  Similarity=0.289  Sum_probs=129.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|+|||||+++|+++. ...+.++.+..  ...+..+  ...+++|||||++.+...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            568999999999999999999999777 65666666644  3334443  578999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.  ...++..+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999998888877664 2367999999999999654  23343333322     245679999999999999


Q ss_pred             HHHHHHHHhcccc
Q 029029          162 DIFYEIAKRLPRV  174 (200)
Q Consensus       162 ~~~~~l~~~~~~~  174 (200)
                      ++|++|.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=5.9e-31  Score=184.60  Aligned_cols=157  Identities=20%  Similarity=0.377  Sum_probs=121.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+++|++|+|||||+++|+++.+.. ..++.+..  ...+  ......+.+|||||++.+...+..++.++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877654 44555532  2222  234578999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      |+++++++..+..|+..+... ...+.|+++|+||+|+.+.  ....+......     ..+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999998888887663 2367899999999999653  22332322211     134569999999999999999


Q ss_pred             HHHHHhcccc
Q 029029          165 YEIAKRLPRV  174 (200)
Q Consensus       165 ~~l~~~~~~~  174 (200)
                      ++|.+.+.++
T Consensus       154 ~~l~~~i~~~  163 (164)
T 1r8s_A          154 DWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHhhc
Confidence            9999988643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=5.4e-30  Score=182.89  Aligned_cols=160  Identities=21%  Similarity=0.338  Sum_probs=125.0

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      +...+.+||+|+|.+|+|||||+++|+++.+ ....++.+....  .+..++  ..+.+||+||++.+...+..++..+|
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence            3446789999999999999999999998776 455566665443  333333  78999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCC
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTAT  158 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  158 (200)
                      ++|+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  168 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGE  168 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            9999999999999999988888876642 367999999999998653  33444444332     234579999999999


Q ss_pred             CHHHHHHHHHHhc
Q 029029          159 NVNDIFYEIAKRL  171 (200)
Q Consensus       159 ~i~~~~~~l~~~~  171 (200)
                      |++++|++|.+.+
T Consensus       169 gi~~l~~~l~~~l  181 (181)
T 2h17_A          169 GLCQGLEWMMSRL  181 (181)
T ss_dssp             THHHHHHHHHTC-
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2.2e-30  Score=186.70  Aligned_cols=160  Identities=20%  Similarity=0.373  Sum_probs=120.4

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|++|+|||||+++|+++.+.. ..++.+  .....+..  ....+.+|||||++.+...+..++..+|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3568999999999999999999998776543 344444  22333333  347899999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNV  160 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  160 (200)
                      |+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.|+
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            99999999999999988988876532 357999999999998653  22333222211     13356999999999999


Q ss_pred             HHHHHHHHHhccc
Q 029029          161 NDIFYEIAKRLPR  173 (200)
Q Consensus       161 ~~~~~~l~~~~~~  173 (200)
                      +++|++|.+.+.+
T Consensus       179 ~~l~~~l~~~i~~  191 (192)
T 2b6h_A          179 YDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.2e-29  Score=179.86  Aligned_cols=160  Identities=23%  Similarity=0.308  Sum_probs=124.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...++|+++|++|+|||||+++|.++.+ ..+.++.|..  ...+..+  ...+++|||||++.++..+..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            5689999999999999999999996543 3455666533  3334444  578999999999999988999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+..  ..+++.....     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999998888776543 23678999999999987543  3333333221     234579999999999999


Q ss_pred             HHHHHHHHhcccc
Q 029029          162 DIFYEIAKRLPRV  174 (200)
Q Consensus       162 ~~~~~l~~~~~~~  174 (200)
                      ++|++|.+.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=1.7e-28  Score=190.50  Aligned_cols=163  Identities=29%  Similarity=0.484  Sum_probs=142.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++..+|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            468999999999999999999998888777777765444 4556778889999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecC
Q 029029           89 VYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSA  154 (200)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  154 (200)
                      |+|++++.++..+. .|+..+.... .++|+++|+||+|+.+.            +.+..+++..+++..++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999886 7888887764 48999999999999653            56778889999999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHhccc
Q 029029          155 KTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~  173 (200)
                      ++|.|++++|++|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=1.2e-29  Score=183.30  Aligned_cols=162  Identities=23%  Similarity=0.320  Sum_probs=122.6

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEE--EEE-CCeEEEEEEEeCCCccccccch---hh
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQT--LAV-NDATVKFEIWDTAGQERYHSLA---PM   78 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~D~~G~~~~~~~~---~~   78 (200)
                      ....+.+||+++|++|||||||++++.+ .+...  ++.+.+.....  ..+ ++..+.+++|||+|++.+....   ..
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            3456789999999999999999998885 33332  33333332222  223 2566889999999999987776   78


Q ss_pred             hhcCCcEEEEEEeCCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC-------CCCCHHHHHHHHH----Hc
Q 029029           79 YYRGAAAAIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-------RKVTAEEAQAYAQ----EN  145 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~~  145 (200)
                      ++.++|++|+|||++++  +++..+..|+..+... ..+.|+++|+||+|+.+.       +.+.......+++    ..
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            99999999999999997  6777777888777544 368999999999998652       3344455667777    67


Q ss_pred             CCcEEEecCCCCCCHHHHHHHHHHhc
Q 029029          146 GLFFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       146 ~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      +++++++||++ .|++++|+.+++.+
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHh
Confidence            88999999999 99999999999876

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=3.7e-30  Score=184.31  Aligned_cols=165  Identities=20%  Similarity=0.412  Sum_probs=122.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC--cccCcccCcceeeEEEEEEEE---CCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ++||+|+|++|||||||+++|.+.  .+...+.++.|.++.......   ++..+.+.+|||+|++.+...+..++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999964  344445667776665555443   235678999999999999888899999999


Q ss_pred             EEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC---HHHHHHHHHHcCCc----EEEecCCC
Q 029029           85 AAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT---AEEAQAYAQENGLF----FMETSAKT  156 (200)
Q Consensus        85 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  156 (200)
                      ++++|+|++++ .+++.+..|+..+.... ++.|+++|+||+|+.+.+...   .+....+++.++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 57888899999887653 578999999999986543322   22334555556776    99999999


Q ss_pred             CC-CHHHHHHHHHHhccccC
Q 029029          157 AT-NVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       157 ~~-~i~~~~~~l~~~~~~~~  175 (200)
                      +. +++++++.+.+.+....
T Consensus       161 ~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC-
T ss_pred             CchhHHHHHHHHHHHHhccc
Confidence            97 99999999998876643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=5.9e-32  Score=196.61  Aligned_cols=163  Identities=31%  Similarity=0.525  Sum_probs=135.4

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ......++..+.+++|||||++.+...+..++.++|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            36789999999999999999999998777666555554333 34455567778899999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCCC------------CCCHHHHHHHHHHcCC-cEEEe
Q 029029           87 IIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDAR------------KVTAEEAQAYAQENGL-FFMET  152 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  152 (200)
                      |+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+..            .+..++...+++..++ +++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999999886 7877776643 478999999999997543            4555667778888887 89999


Q ss_pred             cCCCCCCHHHHHHHHHHhc
Q 029029          153 SAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=3.5e-30  Score=184.97  Aligned_cols=160  Identities=24%  Similarity=0.366  Sum_probs=126.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|+|||||+++|.++.+.. ..++.+...  .....+  ...+.+|||||++.+...+..++..+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            568999999999999999999998766543 445555332  333333  578999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999888888776642 3689999999999986542  222232221     2234579999999999999


Q ss_pred             HHHHHHHHhcccc
Q 029029          162 DIFYEIAKRLPRV  174 (200)
Q Consensus       162 ~~~~~l~~~~~~~  174 (200)
                      ++|++|.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=6.3e-29  Score=177.30  Aligned_cols=160  Identities=23%  Similarity=0.338  Sum_probs=124.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|+|||||+++|+++.+ ....++.+...  ..+..+  +..+.+||+||++.+...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999997666 45556666443  333343  378999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|.+++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++......     .+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888876643 468999999999998653  334444443322     23479999999999999


Q ss_pred             HHHHHHHHhcccc
Q 029029          162 DIFYEIAKRLPRV  174 (200)
Q Consensus       162 ~~~~~l~~~~~~~  174 (200)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=4.4e-28  Score=170.59  Aligned_cols=155  Identities=16%  Similarity=0.150  Sum_probs=113.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhhhc-
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYYR-   81 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~-   81 (200)
                      ..++|+++|++|+|||||+++|.+..+.....+..+.+.....+..++  ..+.+|||||+..+..      ....++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            368999999999999999999997655433333333333333444443  5799999999887642      3344554 


Q ss_pred             -CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        82 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                       .+|++++|+|.++.+.   ...|+..+..   .+.|+++|+||+|+.+.+.+.. +...+++.++++++++||++|.|+
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence             8999999999998543   3456666654   3689999999999865444332 367778888999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 029029          161 NDIFYEIAKRLP  172 (200)
Q Consensus       161 ~~~~~~l~~~~~  172 (200)
                      +++|+++.+.+.
T Consensus       153 ~~l~~~l~~~~~  164 (165)
T 2wji_A          153 EELKKAISIAVK  164 (165)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=1e-27  Score=175.30  Aligned_cols=163  Identities=21%  Similarity=0.268  Sum_probs=113.3

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCcccccc-chhhhhcCC
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHS-LAPMYYRGA   83 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~   83 (200)
                      ...+.+||+|+|++|+|||||+++|+++.+...+.+ .+....  .+.+++. .+.+++|||||++.+.. .+..++..+
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   79 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA   79 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence            456789999999999999999999998887665543 333332  2444443 68899999999998887 788889999


Q ss_pred             cEEEEEEeCCCHH-HHHHHHHHHH-HHHH--hCCCCCeEEEEEeCcCccCCCCCCH--HHHHHHHH--------------
Q 029029           84 AAAIIVYDITNQA-SFERAKKWVQ-ELQA--QGNPNMVMALAGNKADLLDARKVTA--EEAQAYAQ--------------  143 (200)
Q Consensus        84 d~~i~v~d~~~~~-s~~~~~~~~~-~i~~--~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~--------------  143 (200)
                      |++|+|+|+++.. ++.....++. .+..  ....+.|+++|+||+|+.+......  +.+.....              
T Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence            9999999999854 4555544444 3433  2345789999999999975432111  11111111              


Q ss_pred             -------------------Hc--CCcEEEecCCCC------CCHHHHHHHHHHhc
Q 029029          144 -------------------EN--GLFFMETSAKTA------TNVNDIFYEIAKRL  171 (200)
Q Consensus       144 -------------------~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~~  171 (200)
                                         ..  +++|++|||++|      .|++++|++|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                               11  567999999999      99999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1.2e-27  Score=169.88  Aligned_cols=160  Identities=19%  Similarity=0.212  Sum_probs=120.2

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+.++|+|+|++|+|||||+++|+++.+.....+..+.+.....+..++  ..+.+|||||++.+...+..++..+|
T Consensus         3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   80 (178)
T 2lkc_A            3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTD   80 (178)
T ss_dssp             TTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred             CcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence            3456789999999999999999999998877665555555444445555555  46789999999999999888999999


Q ss_pred             EEEEEEeCCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC---------CcEEEe
Q 029029           85 AAIIVYDITNQ---ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG---------LFFMET  152 (200)
Q Consensus        85 ~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~  152 (200)
                      ++++|+|++++   .+++.    +..+   ...+.|+++|+||+|+.+.   ..+.........+         ++++++
T Consensus        81 ~~i~v~d~~~~~~~~~~~~----l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (178)
T 2lkc_A           81 IVILVVAADDGVMPQTVEA----INHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKL  150 (178)
T ss_dssp             EEEEEEETTCCCCHHHHHH----HHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEEC
T ss_pred             EEEEEEECCCCCcHHHHHH----HHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEE
Confidence            99999999883   33322    2222   2357899999999998653   2333333332221         479999


Q ss_pred             cCCCCCCHHHHHHHHHHhccccCC
Q 029029          153 SAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      ||++|.|++++|++|.+.+...+.
T Consensus       151 Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          151 SAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             ecCCCCCHHHHHHHHHHhhhhhcc
Confidence            999999999999999998876554

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.5e-29  Score=186.96  Aligned_cols=166  Identities=22%  Similarity=0.264  Sum_probs=121.4

Q ss_pred             CCCccceeEEEECCC---------CCCHHHHHHHHHh---CcccCcccCcc-eeeEEEEE--------------EEECCe
Q 029029            5 GNKNINAKLVLLGDV---------GAGKSSLVLRFVK---GQFIEFQESTI-GAAFFSQT--------------LAVNDA   57 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~   57 (200)
                      ......+||+|+|.+         |+|||||+++|++   +.+...+.++. +.++....              ..+++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            345678999999999         9999999999997   34444444433 22221111              123566


Q ss_pred             EEEEEEEe-----------------------CCCccccccchhhhhc---------------------CCcEEEEEEeCC
Q 029029           58 TVKFEIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAIIVYDIT   93 (200)
Q Consensus        58 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~   93 (200)
                      .+.+++||                       ++|++.+...+..++.                     ++|++|+|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       6666666666767766                     799999999999


Q ss_pred             CH--HHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-cCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           94 NQ--ASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        94 ~~--~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      ++  .+++.+..|+..+... ...++|+++|+||+|+.+.+.+  ++...++.. .+++++++||++|.|++++|++|.+
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            98  8999999999888764 3357899999999998654433  567777766 4889999999999999999999998


Q ss_pred             hcc
Q 029029          170 RLP  172 (200)
Q Consensus       170 ~~~  172 (200)
                      .+.
T Consensus       252 ~l~  254 (255)
T 3c5h_A          252 LID  254 (255)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=4.3e-27  Score=181.05  Aligned_cols=161  Identities=20%  Similarity=0.301  Sum_probs=126.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCccc---CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFI---EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----HSLAPMYY   80 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~   80 (200)
                      ..+||+++|++|+|||||+++|+++...   ..+.++.+..+.  ...+.+ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999976322   134445544433  333334 688999999999988     77888899


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEeCcCccC--CCC----CCHHHHHHHHHHcC---CcE
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQ--GNPNMVMALAGNKADLLD--ARK----VTAEEAQAYAQENG---LFF  149 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  149 (200)
                      .++|++|+|+|++++++++.+..|...+...  ..+++|+++|+||+|+.+  .+.    ...+++.++++.++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            9999999999999999999887665544332  146899999999999976  333    45577888888887   789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhccc
Q 029029          150 METSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      +++||++ .++.++|..+++.+..
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            9999999 8999999998887654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=7e-27  Score=172.70  Aligned_cols=165  Identities=16%  Similarity=0.146  Sum_probs=115.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc------cc---ccchhh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE------RY---HSLAPM   78 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~---~~~~~~   78 (200)
                      ...++|+|+|++|+|||||+++|+++.+.....+....+.........  ...+.+|||||+.      ..   ......
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            567999999999999999999999776542221211122222222222  3679999999983      21   112234


Q ss_pred             hhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH---HHHHHHHHcC--CcEEE
Q 029029           79 YYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE---EAQAYAQENG--LFFME  151 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  151 (200)
                      ++..+|++|+|+|++++.++.  ....|+..+... ..+.|+++|+||+|+.+.+.+...   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            578899999999999987664  224555555543 247899999999999876666554   4566666676  88999


Q ss_pred             ecCCCCCCHHHHHHHHHHhccccC
Q 029029          152 TSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +||++|.|++++|++|.+.+....
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999886553

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=6.1e-27  Score=167.72  Aligned_cols=159  Identities=17%  Similarity=0.153  Sum_probs=120.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR   81 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~   81 (200)
                      .+.++|+++|++|+|||||+++|.+........+..+.+.....+..+  +..+.+|||||++.+.      .....++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            467999999999999999999999766544444444444444445544  3789999999998764      23445553


Q ss_pred             --CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029           82 --GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN  159 (200)
Q Consensus        82 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (200)
                        .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+.+.+.+. .....+++..+++++++||+++.|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence              5999999999876   4455667766654   468999999999986544443 346777888899999999999999


Q ss_pred             HHHHHHHHHHhccccC
Q 029029          160 VNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       160 i~~~~~~l~~~~~~~~  175 (200)
                      ++++|+++.+.+....
T Consensus       156 v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          156 IEELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=5.9e-28  Score=187.43  Aligned_cols=160  Identities=20%  Similarity=0.352  Sum_probs=119.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+|+|.+|+|||||+++|.++.+... .++.+..+  ..+.  ...+.+++|||||++.+...+..++..+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999997765433 24444332  2232  34578999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  161 (200)
                      +|||++++.++..+..|+..+... ...++|+++|+||+|+.+..  ..+++......     .+++++++||++|.|++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            999999999999988877776553 23689999999999987543  23333332211     23469999999999999


Q ss_pred             HHHHHHHHhcccc
Q 029029          162 DIFYEIAKRLPRV  174 (200)
Q Consensus       162 ~~~~~l~~~~~~~  174 (200)
                      ++|++|.+.+.++
T Consensus       316 el~~~l~~~l~~~  328 (329)
T 3o47_A          316 EGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=3e-27  Score=170.25  Aligned_cols=158  Identities=16%  Similarity=0.200  Sum_probs=108.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC----------ccccccchh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLAP   77 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   77 (200)
                      ...++|+|+|++|+|||||+++|+++.+.....++.+.+........++   .+.+|||||          ++.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            4579999999999999999999998776666666666555555544443   599999999          666666677


Q ss_pred             hhhcCC---cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--HHHHH-HHHHcCCcEEE
Q 029029           78 MYYRGA---AAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA--EEAQA-YAQENGLFFME  151 (200)
Q Consensus        78 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~~  151 (200)
                      .++..+   |++++|+|.+++.++.... ++..+..   .+.|+++|+||+|+.+.+.+..  +++.+ +....+.++++
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence            777766   9999999999876655432 2222222   5689999999999976543322  22222 22224678999


Q ss_pred             ecCCCCCCHHHHHHHHHHhcc
Q 029029          152 TSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      +||++|.|++++|++|.+.+.
T Consensus       174 ~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          174 FSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=1.3e-26  Score=178.41  Aligned_cols=180  Identities=17%  Similarity=0.176  Sum_probs=132.8

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe-EEEEEEEeCCCccccc---------
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYH---------   73 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~---------   73 (200)
                      .+...+...|+++|.+|+|||||+|+|++..+. ...+..+++........... ...+.+|||||.....         
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence            456677899999999999999999999976653 23334444433333333233 6789999999986544         


Q ss_pred             -cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEE
Q 029029           74 -SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFM  150 (200)
Q Consensus        74 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~  150 (200)
                       .....++..+|++++|+|++++.++.....|+..+..   .+.|+++|+||+|+.............+.+..+  .+++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence             4556678899999999999988777776666777665   368999999999997444555666777777765  7899


Q ss_pred             EecCCCCCCHHHHHHHHHHhccccCCCCCCCCceeccCC
Q 029029          151 ETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRP  189 (200)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  189 (200)
                      ++||++|.|++++|+++.+.+.+... .++.+.+ +++|
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~~~~-~~~~~~~-td~~  196 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPEGEP-LFPEDMI-TDLP  196 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCBCCC-SSCTTCC-BCCC
T ss_pred             EEeCCCCCCHHHHHHHHHHhCccCCC-CCCcccc-cCCC
Confidence            99999999999999999999876544 4555443 3443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=9.9e-28  Score=183.68  Aligned_cols=157  Identities=17%  Similarity=0.223  Sum_probs=119.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccC---cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc---chhhhhcCCcE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIE---FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---LAPMYYRGAAA   85 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   85 (200)
                      ||+++|..|+|||||++++.++....   ...++.|..+..    ++ ..+++++|||+|+++++.   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            79999999999999999887543322   245667666543    22 347899999999999964   36889999999


Q ss_pred             EEEEEeCCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC-------CCCCHHHHHHHHHH----cCCcEEEe
Q 029029           86 AIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-------RKVTAEEAQAYAQE----NGLFFMET  152 (200)
Q Consensus        86 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  152 (200)
                      +|+|||++++  +....+..|+..+... .+++|+++++||+|+...       +++..++.+++++.    ++++|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  3333444445555443 468999999999999754       23455556666664    67899999


Q ss_pred             cCCCCCCHHHHHHHHHHhccccC
Q 029029          153 SAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      ||++ .+|.++|..+++.+.++.
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhH
Confidence            9998 589999999999887643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.5e-26  Score=173.85  Aligned_cols=156  Identities=16%  Similarity=0.082  Sum_probs=118.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch------hhhh-
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA------PMYY-   80 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~-   80 (200)
                      .+.++|+++|++|+|||||+++|++.......  ..|++.......+...+..+.+|||||...+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            45789999999999999999999976654322  23445544444444445789999999998776532      4454 


Q ss_pred             -cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029           81 -RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN  159 (200)
Q Consensus        81 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (200)
                       ..+|++++|+|.++.+..   ..|+..+..   .+.|+++++||+|+.+.+.+.. +...+++.++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             589999999999986543   235555544   3689999999999876544443 36778888999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 029029          160 VNDIFYEIAKRLP  172 (200)
Q Consensus       160 i~~~~~~l~~~~~  172 (200)
                      ++++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=7.5e-27  Score=167.39  Aligned_cols=157  Identities=19%  Similarity=0.217  Sum_probs=114.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG-----------QERYHSLAPMY   79 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   79 (200)
                      +||+++|++|+|||||+++|+++.+.....+..  +.........    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999877655444433  3323333333    689999999           55666666667


Q ss_pred             hcC-CcEEEEEEeCCCHHHHHHH-HHHHHH---------HHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCc
Q 029029           80 YRG-AAAAIIVYDITNQASFERA-KKWVQE---------LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF  148 (200)
Q Consensus        80 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  148 (200)
                      +.. ++++++++++.+..++..+ ..|...         .......+.|+++|+||+|+.+..   .+....+++..+++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            766 7766666666666667665 555432         122223578999999999987643   55677888888764


Q ss_pred             -------EEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          149 -------FMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       149 -------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                             ++++||++|.|++++|++|.+.+.+.+.
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   7999999999999999999998876654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=1.4e-26  Score=174.97  Aligned_cols=156  Identities=21%  Similarity=0.184  Sum_probs=119.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc-
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH------SLAPMYYR-   81 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   81 (200)
                      ..++|+++|++|+|||||+++|++....  .....|++.......+.. ...+.+|||||+..+.      .....++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            3579999999999999999999976532  223345565555555665 6789999999998765      34455554 


Q ss_pred             -CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           82 -GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        82 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                       .+|++++|+|.++.+..   ..|...+..   .++|+++++||+|+.+.+.+. .+...+++.++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986543   345555544   478999999999986544443 3467788888999999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 029029          161 NDIFYEIAKRLPRV  174 (200)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (200)
                      +++|+++.+.+...
T Consensus       152 ~el~~~i~~~~~~~  165 (272)
T 3b1v_A          152 DQVVKKAAHTTTST  165 (272)
T ss_dssp             HHHHHHHHHSCTTT
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999876543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=1.2e-26  Score=164.39  Aligned_cols=156  Identities=19%  Similarity=0.197  Sum_probs=111.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch--------hhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------PMY   79 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   79 (200)
                      ...+|+|+|++|+|||||+++|.+.... ....+..+.++....+.+++  ..+.+|||||+.......        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4689999999999999999999976532 11222333344555566665  358999999986532211        135


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN  159 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (200)
                      +..+|++++|+|.+++.+++ ...|+..+......++|+++|+||+|+.+...       .++...+.+++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999887765 34677777666556799999999999854311       11223467899999999999


Q ss_pred             HHHHHHHHHHhcccc
Q 029029          160 VNDIFYEIAKRLPRV  174 (200)
Q Consensus       160 i~~~~~~l~~~~~~~  174 (200)
                      ++++|++|.+.+...
T Consensus       153 v~~l~~~l~~~~~~~  167 (172)
T 2gj8_A          153 VDVLRNHLKQSMGFD  167 (172)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999887543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=5.4e-27  Score=192.91  Aligned_cols=166  Identities=18%  Similarity=0.249  Sum_probs=126.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEE--------EECCeEEEEEEEeCCCccccccchh
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTL--------AVNDATVKFEIWDTAGQERYHSLAP   77 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~D~~G~~~~~~~~~   77 (200)
                      .....+||+++|.+|+|||||+++|.++.+.....++.+.++.....        ..++....+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            34668999999999999999999999888877777888777654421        1123467899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029           78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA  157 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (200)
                      .++..+|++|+|+|+++.   +.+..|+..+.... .+.|+++|+||+|+.+.+.+..+.++..+...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999865   45567888887764 46899999999999887778888888888889999999999999


Q ss_pred             CCHHHHHHHHHHhccccC
Q 029029          158 TNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~  175 (200)
                      .|++++++++.+.+....
T Consensus       193 ~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             --CTTHHHHHHHHHTCTT
T ss_pred             cCHHHHHHHHHHHHhccc
Confidence            999999999999887654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=2.9e-26  Score=160.01  Aligned_cols=150  Identities=19%  Similarity=0.149  Sum_probs=104.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhhhcC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HSLAPMYYRG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   82 (200)
                      .||+++|++|+|||||+++|.++.... ...+..+.+........++  ..+.+|||||....       ...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            589999999999999999999776431 1222222333344444444  37899999998763       3445567889


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCHH
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVN  161 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  161 (200)
                      +|++++|+|.+++.+..  ..++..+...  .+.|+++|+||+|+.+..    ++...++ ..++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            99999999999853322  2223222222  468999999999986542    2233444 5677 79999999999999


Q ss_pred             HHHHHHHHhc
Q 029029          162 DIFYEIAKRL  171 (200)
Q Consensus       162 ~~~~~l~~~~  171 (200)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999876

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=5.7e-26  Score=170.39  Aligned_cols=151  Identities=13%  Similarity=0.088  Sum_probs=112.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc----------chhhhh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LAPMYY   80 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   80 (200)
                      .+|+++|++|||||||+|+|++........+..+.+........++  ..+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            3899999999999999999997755433334444444444555554  4899999999877654          344566


Q ss_pred             --cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           81 --RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                        ..+|++|+|+|.++.+....+..++.      ..+.|+++|+||+|+.+.+.... ....+.+..+++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              88999999999998765544333322      24789999999999865443322 2456777889999999999999


Q ss_pred             CHHHHHHHHHHh
Q 029029          159 NVNDIFYEIAKR  170 (200)
Q Consensus       159 ~i~~~~~~l~~~  170 (200)
                      |++++|+++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999987

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=1.6e-25  Score=160.91  Aligned_cols=156  Identities=19%  Similarity=0.267  Sum_probs=113.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC----------ccccccchh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG----------QERYHSLAP   77 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   77 (200)
                      ...+||+|+|++|+|||||+++|+++. .....++.+.+........+.   .+.+|||||          ++.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            557899999999999999999999766 444556666555444444433   588999999          555666666


Q ss_pred             hhhcCC---cEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHH-cCCcE
Q 029029           78 MYYRGA---AAAIIVYDITNQASF--ERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQE-NGLFF  149 (200)
Q Consensus        78 ~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~~  149 (200)
                      .++..+   |++++|+|.++..+.  ..+..|+..      .+.|+++|+||+|+.+...  ...+.+..++.. .++++
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI  170 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence            676655   999999998875332  223334332      2689999999999975432  223445555555 34789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhccc
Q 029029          150 METSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      +++||++|.|++++|++|.+.+.+
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999998754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=2.8e-26  Score=173.86  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=114.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc----------hhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL----------APM   78 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~   78 (200)
                      ++++|+++|++|+|||||+|+|++......  ...|++.......+...+..+.+|||||...+...          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            468999999999999999999997764322  33344444444444333457899999998776521          222


Q ss_pred             hh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029           79 YY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT  156 (200)
Q Consensus        79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (200)
                      ++  ..+|++|+|+|.++.+....+..+   +...   ++|+++|+||+|+.+.+.... ....+++..+++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCC
Confidence            32  799999999999986554443333   3333   689999999999865433221 25667778899999999999


Q ss_pred             CCCHHHHHHHHHHhcccc
Q 029029          157 ATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (200)
                      |.|++++|+++.+.+...
T Consensus       153 g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GHHHHHHHHHHHTCCCCC
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            999999999999887654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=5.9e-26  Score=166.88  Aligned_cols=165  Identities=16%  Similarity=0.181  Sum_probs=112.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEEC-CeEEEEEEEeCCCc----------cccccch
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQ----------ERYHSLA   76 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~   76 (200)
                      ...++|+|+|.+|+|||||+++|++...........+++......... .....+.+|||||.          +.+....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            457899999999999999999999776433444555555544444444 44567999999994          3334445


Q ss_pred             hhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHHH-------
Q 029029           77 PMYYRG---AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQE-------  144 (200)
Q Consensus        77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~-------  144 (200)
                      ..++..   +|++++|+|.+++.+. ....++..+..   .++|+++|+||+|+.......  .+.+......       
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            555554   7889999999875331 22334444443   468999999999987543221  1222222222       


Q ss_pred             cCCcEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          145 NGLFFMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      .+.+++++||++|.|++++|++|.+.+.....
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence            45689999999999999999999998876644

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=8.3e-25  Score=165.59  Aligned_cols=159  Identities=18%  Similarity=0.134  Sum_probs=118.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------LAPMYY--   80 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--   80 (200)
                      +.++|+++|++|+|||||+++|++........+..+.+.........+  ..+.+|||||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999997766433344444444444444444  4599999999887665      444555  


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ..+|++++|+|.++.+   ....|+..+...  ...|+++++||+|+.+.+....+ ...+.+..+++++++||++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            6899999999998863   233344444443  23899999999998654433332 67778888999999999999999


Q ss_pred             HHHHHHHHHhccccC
Q 029029          161 NDIFYEIAKRLPRVQ  175 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (200)
                      +++|+++.+.+....
T Consensus       154 ~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          154 EELKRMIALMAEGKV  168 (271)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999876543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=2.5e-25  Score=170.52  Aligned_cols=167  Identities=16%  Similarity=0.116  Sum_probs=112.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--------YHSLAPM   78 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   78 (200)
                      ..+..+|+++|.+|+|||||+|+|++..... ..+..+++.............++.+|||||...        +......
T Consensus         4 ~~~~g~V~ivG~~nvGKSTLln~l~g~~~~i-vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            4 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCceee-ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            3567789999999999999999999766532 222222222221111223356899999999875        3344556


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHH-HHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc--CCcEEEecCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN--GLFFMETSAK  155 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~  155 (200)
                      ++..+|++++|+|.+++.+..  ..|+ ..+... ..+.|+++|+||+|+.+....    +....+.+  ..+++++||+
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTT
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCC
Confidence            788999999999998763332  3444 344433 247899999999998653220    22222222  3468999999


Q ss_pred             CCCCHHHHHHHHHHhccccCCCCCCCC
Q 029029          156 TATNVNDIFYEIAKRLPRVQPAPNPSG  182 (200)
Q Consensus       156 ~~~~i~~~~~~l~~~~~~~~~~~~~~~  182 (200)
                      +|.|+++++++|.+.+.+... .++.+
T Consensus       156 ~g~gv~~l~~~l~~~l~~~~~-~y~~~  181 (301)
T 1wf3_A          156 DERQVAELKADLLALMPEGPF-FYPED  181 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCBCCC-SSCTT
T ss_pred             CCCCHHHHHHHHHHhcccCCC-CCCcc
Confidence            999999999999998865433 34443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=2.4e-25  Score=163.19  Aligned_cols=144  Identities=17%  Similarity=0.228  Sum_probs=105.6

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCc---ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG-   82 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   82 (200)
                      ..+.++|+|+|++|+|||||+++|.+..+...   ..++.+..         .....+.+|||||++.++..+..++.. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            45689999999999999999999998775432   22222221         244579999999999998888888877 


Q ss_pred             ---CcEEEEEEeCC-CHHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCcCccCCCCCC------HHHHHHHHHHcCCc
Q 029029           83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDARKVT------AEEAQAYAQENGLF  148 (200)
Q Consensus        83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  148 (200)
                         +|++|+|+|.+ ++.++..+..|+..+...    ...++|+++|+||+|+.+...+.      .+++..++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888888888888777654    34689999999999997655433      34466666777788


Q ss_pred             EEEecCCCCCC
Q 029029          149 FMETSAKTATN  159 (200)
Q Consensus       149 ~~~~Sa~~~~~  159 (200)
                      ++++||++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=8.4e-25  Score=174.02  Aligned_cols=182  Identities=19%  Similarity=0.197  Sum_probs=126.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL-------APM   78 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~   78 (200)
                      ....++|+|+|+.|+|||||+++|++..+. ....+..+.+.........+. ..+.+|||||+..+...       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence            355789999999999999999999866542 112222223333344444433 37999999999876544       344


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                      ++..+|++|+|+|.+..   .....|+..+...   ++|+++|+||+|+...+..  +....+.+.++++++++||++|.
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~  181 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKK  181 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCC
Confidence            78899999999999433   2335666666654   6899999999999765543  55666666788999999999999


Q ss_pred             CHHHHHHHHHHhccccCCCC------CCCCceeccCCCCCCCCCC
Q 029029          159 NVNDIFYEIAKRLPRVQPAP------NPSGMVLMDRPGERTASAS  197 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  197 (200)
                      |++++|++|.+.+.+....+      .+.+.+....|.+..++++
T Consensus       182 gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkg  226 (423)
T 3qq5_A          182 GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKG  226 (423)
T ss_dssp             STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTT
T ss_pred             CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCC
Confidence            99999999999997662222      2445666666776666553

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=3.2e-24  Score=173.27  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLA--------PM   78 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~   78 (200)
                      ..++|+|+|++|+|||||+|+|++.... ...+..+++.  ....+..++  ..+.+|||||...+...+        ..
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERA-IVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            3588999999999999999999865421 1223333333  333444444  679999999987655333        33


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT  158 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (200)
                      ++..+|++++|+|.+++.++..+..+...+...  .++|+++|+||+|+.+....   ....+.+....+++++||++|.
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~  383 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGD  383 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCC
Confidence            678999999999999887665433333333333  26899999999998765432   2233444334789999999999


Q ss_pred             CHHHHHHHHHHhcc
Q 029029          159 NVNDIFYEIAKRLP  172 (200)
Q Consensus       159 ~i~~~~~~l~~~~~  172 (200)
                      |+++++++|.+.+.
T Consensus       384 GI~eL~~~i~~~~~  397 (476)
T 3gee_A          384 GIDTLKQHMGDLVK  397 (476)
T ss_dssp             SHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999999887

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=5.9e-23  Score=161.09  Aligned_cols=162  Identities=17%  Similarity=0.183  Sum_probs=117.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc---------cchhh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPM   78 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~   78 (200)
                      ...++|+++|++|+|||||+++|.+........+..+...........  ...+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            467899999999999999999999765321111222122222222222  4679999999975421         11223


Q ss_pred             hhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029           79 YYRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT  156 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (200)
                      +...+|++++|+|++++.  ++.....|+..+..... +.|+++|+||+|+.....  .++...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            445799999999998876  56777788888877533 789999999999865432  2446666677889999999999


Q ss_pred             CCCHHHHHHHHHHhcccc
Q 029029          157 ATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (200)
                      |.|++++++++.+.+...
T Consensus       320 g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=5e-24  Score=171.27  Aligned_cols=161  Identities=19%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEE--EEEEECCeEEEEEEEeCCCcc----------ccccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQE----------RYHSL   75 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~----------~~~~~   75 (200)
                      ...+||+++|.+|+|||||+|+|++.... ...+..+++...  ..+..++  ..+++|||||+.          .+...
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~  249 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL  249 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHH
Confidence            35689999999999999999999976542 122233333332  3344444  359999999973          33322


Q ss_pred             hh-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH-HH----HcCCcE
Q 029029           76 AP-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY-AQ----ENGLFF  149 (200)
Q Consensus        76 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-~~----~~~~~~  149 (200)
                      .. .++..+|++++|+|++++.++... .|+..+..   .++|+++|+||+|+.+.+....++..+. .+    ..++++
T Consensus       250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~  325 (436)
T 2hjg_A          250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  325 (436)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence            22 367889999999999987766554 46665554   4789999999999987655444333222 22    236789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhccccC
Q 029029          150 METSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +++||++|.|++++|+.+.+.+....
T Consensus       326 ~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          326 LFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999988776543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=8.5e-24  Score=170.78  Aligned_cols=162  Identities=21%  Similarity=0.220  Sum_probs=115.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE--EEEEEECCeEEEEEEEeCCC----------ccccccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAG----------QERYHSL   75 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   75 (200)
                      ...++|+++|.+|+|||||+++|++.... ...+..+++..  ...+..++  ..+++|||||          ++.+...
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCcc-ccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence            45789999999999999999999965421 12223333322  23344444  3799999999          4555544


Q ss_pred             hh-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-----CCcE
Q 029029           76 AP-MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-----GLFF  149 (200)
Q Consensus        76 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  149 (200)
                      .. .++..+|++|+|+|.++... +....|+..+..   .++|+++|+||+|+.+.+....++..+.++..     .+++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            44 36789999999999987533 233445555544   46899999999999877666667777766654     5789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          150 METSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      +++||++|.|++++|+++.+.+.....
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999988765543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=1.2e-23  Score=163.47  Aligned_cols=161  Identities=18%  Similarity=0.187  Sum_probs=116.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhhhh---cCC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPMYY---RGA   83 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~   83 (200)
                      .+|+|+|.+|+|||||+++|++........+..+.......+.+++ ...+.+|||||...    ...+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            3689999999999999999986543211111111111122233332 25799999999643    333444444   459


Q ss_pred             cEEEEEEeCCC---HHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEEEecCCC
Q 029029           84 AAAIIVYDITN---QASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFMETSAKT  156 (200)
Q Consensus        84 d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  156 (200)
                      |++|+|+|+++   +.+++.+..|+..+....  ...+|+++|+||+|+....    +....+.+.+.  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   778888888998888764  2579999999999986432    34556666665  6899999999


Q ss_pred             CCCHHHHHHHHHHhccccCC
Q 029029          157 ATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~~  176 (200)
                      +.|+++++++|.+.+.+...
T Consensus       314 g~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          314 REGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SSTTHHHHHHHHHHHTSCCC
T ss_pred             CcCHHHHHHHHHHHHhhCcc
Confidence            99999999999999876554

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=2.6e-22  Score=159.81  Aligned_cols=168  Identities=13%  Similarity=0.092  Sum_probs=118.7

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEE---------E----------EEECCeEEEEEEEe
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ---------T----------LAVNDATVKFEIWD   65 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~---------~----------~~~~~~~~~~~i~D   65 (200)
                      +...+.++|+++|++++|||||+++|++....... .....+....         .          .........+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            35567899999999999999999999964322111 0000000000         0          00012237899999


Q ss_pred             CCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHHHHHHHH
Q 029029           66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEEAQAYAQ  143 (200)
Q Consensus        66 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~  143 (200)
                      |||++.+...+...+..+|++|+|+|.+++.++.+..+|+..+....  ..|+++++||+|+.+....  ..+++..+..
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998766677777777766653  3589999999998754321  1122233322


Q ss_pred             Hc---CCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          144 EN---GLFFMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       144 ~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      ..   +++++++||++|.|+++++++|.+.+....
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            22   568999999999999999999999776543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=4.3e-23  Score=158.25  Aligned_cols=174  Identities=18%  Similarity=0.164  Sum_probs=114.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccchhh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPM   78 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~   78 (200)
                      .+..+|+|+|++|+|||||+++|++..... ..+..+++.......+......+.+|||||..         .+......
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i-~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccc-cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            455689999999999999999999765421 12222222211111122234679999999987         23344456


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTA  157 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (200)
                      ++..+|++++|+|.++   +.....|+.....  ..+.|+++++||+|+........+.+..+.+..+. .++++||+++
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            6789999999999976   2222233333222  24689999999999865222222334555555665 6899999999


Q ss_pred             CCHHHHHHHHHHhccccCCCCCCCCceeccCC
Q 029029          158 TNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRP  189 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  189 (200)
                      .|++++++++.+.+.+... .++.+.+ ++.|
T Consensus       160 ~~v~~l~~~i~~~l~~~~~-~~~~~~~-~d~~  189 (301)
T 1ega_A          160 LNVDTIAAIVRKHLPEATH-HFPEDYI-TDRS  189 (301)
T ss_dssp             TTHHHHHHHHHTTCCBCCC-SSCTTCC-SCCS
T ss_pred             CCHHHHHHHHHHhCCcCCC-CCCcccc-CCCC
Confidence            9999999999998875433 4444433 4444

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=8.6e-23  Score=151.76  Aligned_cols=172  Identities=15%  Similarity=0.166  Sum_probs=110.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCc--ceeeEEEEEEEECCeEEEEEEEeCCCcc-----------ccc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST--IGAAFFSQTLAVNDATVKFEIWDTAGQE-----------RYH   73 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~   73 (200)
                      ....++|+|+|++|+|||||+++|++........+.  .+..........++  ..+.+|||||..           .+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            356799999999999999999999987765444332  22233333344443  578999999943           233


Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC------HHHHHHHHHHc
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQAS--FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT------AEEAQAYAQEN  145 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~  145 (200)
                      .....++..+|++|+|+|.+....  ...+..+...+...  ...|+++|+||+|+.+...+.      .+.++.+.+..
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            334445668899999999875322  22222232222222  346899999999986654333      23577788888


Q ss_pred             CCcEEEecCCCC-----CCHHHHHHHHHHhccccCCCCCCCC
Q 029029          146 GLFFMETSAKTA-----TNVNDIFYEIAKRLPRVQPAPNPSG  182 (200)
Q Consensus       146 ~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~~~~~~~~~~  182 (200)
                      +..++.++...+     .++.+++..+.+.+.+..+.++...
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~  223 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNR  223 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC---
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence            888888877644     6899999999888877666555544

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=7.3e-22  Score=157.42  Aligned_cols=167  Identities=16%  Similarity=0.176  Sum_probs=107.0

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc---cCcccC--cceeeEEEEEEEE-------------C--C----eEEEE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQES--TIGAAFFSQTLAV-------------N--D----ATVKF   61 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   61 (200)
                      .+...++|+++|+.++|||||+++|++...   .....+  +....+.......             +  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            446789999999999999999999984322   222222  3333333322211             1  1    13789


Q ss_pred             EEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHH
Q 029029           62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQ  139 (200)
Q Consensus        62 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~  139 (200)
                      .+|||||++.+...+...+..+|++|+|+|.+++....+..+.+..+...  ...|+++++||+|+.+...  ...+++.
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~  161 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK  161 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence            99999999988777777778899999999999532112222223333333  2347999999999976443  2345566


Q ss_pred             HHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          140 AYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       140 ~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      ++++.   .+++++++||++|.|+++++++|.+.+...
T Consensus       162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            66654   367899999999999999999999877654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=6.6e-23  Score=164.88  Aligned_cols=153  Identities=22%  Similarity=0.244  Sum_probs=99.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE--EEEEEECCeEEEEEEEeCCCccc---------cccchhhh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQER---------YHSLAPMY   79 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~   79 (200)
                      .+|+++|.+|+|||||+|+|++... .......|++..  .......+  ..+++|||||.+.         +......+
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHH
Confidence            3799999999999999999996553 223344454433  33344444  4689999999764         23345567


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH-HHHHHHcCC-cEEEecCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA-QAYAQENGL-FFMETSAKTA  157 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~  157 (200)
                      +..+|++++|+|..++.+...  .++..+...  .++|+++|+||+|+.+.  . .... ..+. ..++ .++++||++|
T Consensus        79 ~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           79 IREADLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHN  150 (439)
T ss_dssp             HTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCC
Confidence            899999999999987543322  222222222  36899999999997432  0 1222 3333 4566 6899999999


Q ss_pred             CCHHHHHHHHHHhcccc
Q 029029          158 TNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~  174 (200)
                      .|++++++++.+.+.+.
T Consensus       151 ~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          151 INLDTMLETIIKKLEEK  167 (439)
T ss_dssp             BSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhcccc
Confidence            99999999999988643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=4.8e-23  Score=166.52  Aligned_cols=153  Identities=18%  Similarity=0.239  Sum_probs=109.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhhh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE-RYHS--------LAPMY   79 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~   79 (200)
                      .++|+|+|.+|+|||||+|+|++.... ....+..+.+.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999976532 22222223333344455544  569999999987 5432        12356


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN  159 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (200)
                      +..+|++|+|+|.+++.+++.. .+++.+     .++|+++|+||+|+.+.  ...+++..+. ..+.+++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            7899999999999987666543 223332     36799999999999653  3445554443 2447899999999999


Q ss_pred             HHHHHHHHHHhccc
Q 029029          160 VNDIFYEIAKRLPR  173 (200)
Q Consensus       160 i~~~~~~l~~~~~~  173 (200)
                      +++++++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998763

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=1.6e-21  Score=155.50  Aligned_cols=167  Identities=17%  Similarity=0.210  Sum_probs=113.0

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc---cCcccC--cceeeEEEEEEEE-------------C--C----eEEEE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF---IEFQES--TIGAAFFSQTLAV-------------N--D----ATVKF   61 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   61 (200)
                      .+...++|+++|+.++|||||+++|++...   .....+  +....+.......             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            456789999999999999999999985322   222222  3333333322211             1  1    13789


Q ss_pred             EEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHH
Q 029029           62 EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQ  139 (200)
Q Consensus        62 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~  139 (200)
                      .+|||||++.+...+...+..+|++|+|+|.++.....+..+.+..+....  ..|+++++||+|+.+...  ...+++.
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~  163 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIK  163 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHHH
Confidence            999999999887777777788999999999985321112222233333332  257999999999876432  1233445


Q ss_pred             HHHHH---cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          140 AYAQE---NGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       140 ~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      .+++.   .+++++++||++|.|+++++++|.+.+...
T Consensus       164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            55443   467899999999999999999999877654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=1.6e-22  Score=152.05  Aligned_cols=179  Identities=14%  Similarity=0.116  Sum_probs=112.6

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCc-ceeeEEEEEEEECCeEEEEEEEeCCCccccccch--------
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQEST-IGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--------   76 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------   76 (200)
                      ....++|+|+|++|+|||||+++|++... .....+. .+...........  +..+.+|||||........        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            34579999999999999999999997663 3333332 2233333333333  3579999999986543222        


Q ss_pred             ---hhhhcCCcEEEEEEeCCCHHHHH-HHHHHHHHHHHhCCCCCeEEEEEe-CcCccCCCCCCH-------HHHHHHHHH
Q 029029           77 ---PMYYRGAAAAIIVYDITNQASFE-RAKKWVQELQAQGNPNMVMALAGN-KADLLDARKVTA-------EEAQAYAQE  144 (200)
Q Consensus        77 ---~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~  144 (200)
                         ..++..+|++|+|+|++...... .+..++..+... ....|.++++| |+|+... ....       +.+..+.+.
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence               22568899999999998622221 223344433222 12356666666 9998743 1111       224445555


Q ss_pred             cCCcE-----EEecCCCCCCHHHHHHHHHHhccccCCCCCCCCceeccCCC
Q 029029          145 NGLFF-----METSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPG  190 (200)
Q Consensus       145 ~~~~~-----~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (200)
                      .+..+     +++||+++.|++++|++|.+.+....+..++.+.. .+.|.
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~  224 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLY-SLIQR  224 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH-HHC--
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHH-HHHHH
Confidence            55432     68999999999999999999988776556665533 34443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=8.5e-23  Score=164.09  Aligned_cols=155  Identities=17%  Similarity=0.185  Sum_probs=101.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhhhc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--------RYHSLAPMYYR   81 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~   81 (200)
                      ..+|+++|.+|+|||||+|+|++... ....++.|++...........+..+++|||||++        .+...+..++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            36899999999999999999996543 3455667777666666665556789999999985        45566677889


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCCCCH
Q 029029           82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNV  160 (200)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  160 (200)
                      .+|++|+|+|..++.+...  .++..+..  ..++|+++|+||+|+.+....    ..++. ..++ .++++||++|.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence            9999999999988654332  33333332  257899999999998643211    11122 3455 6899999999999


Q ss_pred             HHHHHHHHHhcccc
Q 029029          161 NDIFYEIAKRLPRV  174 (200)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (200)
                      +++++++.+.+.+.
T Consensus       153 ~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          153 GDLLDAVAEHFKNI  166 (436)
T ss_dssp             HHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHhcCcc
Confidence            99999999988753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=1.2e-22  Score=153.87  Aligned_cols=165  Identities=16%  Similarity=0.196  Sum_probs=94.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCc-c-------cCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-----
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-Q-------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----   72 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----   72 (200)
                      ++...++|+|+|.+|+|||||+|+|++...... +       .++.+.+........++....+.+|||||....     
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence            456689999999999999999999886554322 2       344444444444444555579999999997321     


Q ss_pred             --ccch-------hhhhc-------------CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           73 --HSLA-------PMYYR-------------GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        73 --~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                        ....       ..++.             .+|+++++++.+..........+++.+..    ++|+++|+||+|+...
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence              1111       22222             37799999977652211222334444432    7899999999998643


Q ss_pred             CCCC--HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          131 RKVT--AEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      .+..  .+.+.+.....+++++++||.++.++++++++|.+.+...
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~  205 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLA  205 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEE
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcE
Confidence            3221  1334555667889999999999999999999999877543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=1.9e-21  Score=152.39  Aligned_cols=164  Identities=18%  Similarity=0.106  Sum_probs=108.3

Q ss_pred             cee-EEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhh
Q 029029           10 NAK-LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMY   79 (200)
Q Consensus        10 ~~~-i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~   79 (200)
                      .++ |+++|++|+|||||+++|.+........+..+.+.....+.+++  ..+.+|||+|...         +.... ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            355 99999999999999999997654322222222233445566666  5689999999622         22222 24


Q ss_pred             hcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC-HHHHHHHHHHc---CCcEEEec
Q 029029           80 YRGAAAAIIVYDITNQA--SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEEAQAYAQEN---GLFFMETS  153 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~S  153 (200)
                      +..+|++++|+|.+++.  .......|...+......+.|+++|+||+|+.+..... .+.+..++...   +.+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            67899999999999876  45555666666666555678999999999986532100 11222333444   33689999


Q ss_pred             CCCCCCHHHHHHHHHHhccccCC
Q 029029          154 AKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      |+++.|+++++++|.+.+.....
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHhcccCC
Confidence            99999999999999987766543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=1.4e-21  Score=161.48  Aligned_cols=162  Identities=18%  Similarity=0.233  Sum_probs=112.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCc--ccC-----------cccCcceeeEEEEEEEE-----CCeEEEEEEEeCCCcc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQ--FIE-----------FQESTIGAAFFSQTLAV-----NDATVKFEIWDTAGQE   70 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~--~~~-----------~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~   70 (200)
                      +-.+|+|+|+.++|||||+++|+...  ...           ......|.+.......+     ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35789999999999999999998622  110           00112233433333222     4557899999999999


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC---
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL---  147 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  147 (200)
                      ++...+...+..+|++|+|+|.++..+......|.....    .++|+++++||+|+.+.+  .......+....++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999888899999999999999998665555555654442    368999999999986532  23334556566666   


Q ss_pred             cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          148 FFMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       148 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                      .++++||++|.|++++++++.+.+.....
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~~  185 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIPPPEG  185 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCCCccc
Confidence            48999999999999999999999876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.87  E-value=9.9e-22  Score=159.39  Aligned_cols=157  Identities=18%  Similarity=0.139  Sum_probs=109.7

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCc----c---cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQ----F---IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY   79 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   79 (200)
                      ..+.++|+++|+.++|||||+++|++..    .   .....+..+.+........+  ...+.+|||||++.+...+...
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHH
Confidence            3568999999999999999999999765    1   11111111111111222223  3689999999999988888888


Q ss_pred             hcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHHc----CCcEE
Q 029029           80 YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQEN----GLFFM  150 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~  150 (200)
                      +..+|++|+|+|.++   +++.+.    +..+..   .++|.++++||+|+.+...  ...+++..+++..    +++++
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~----l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEH----MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHH----HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             HhhCCEEEEEEecCCCccHHHHHH----HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            999999999999987   444333    333333   3578899999999875321  1123455555555    57899


Q ss_pred             EecCCCCCCHHHHHHHHHHhcc
Q 029029          151 ETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      ++||++|.|+++++++|.+.+.
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHhhc
Confidence            9999999999999999999775

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=7.1e-22  Score=160.54  Aligned_cols=153  Identities=23%  Similarity=0.199  Sum_probs=101.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc--cC---------------------------cccCcceeeEEEEEEEECCeE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IE---------------------------FQESTIGAAFFSQTLAVNDAT   58 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   58 (200)
                      ...+||+++|++++|||||+++|++...  ..                           ......|++.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4569999999999999999999986411  00                           001112334333344444556


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHH------HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE------RAKKWVQELQAQGNPNMVMALAGNKADLLDARK  132 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~  132 (200)
                      ..+.||||||++++...+..++..+|++|+|+|++++..+.      ...+.+......  ...|+++++||+|+.+.++
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence            78999999999999999999999999999999999864432      222223333333  2346999999999976433


Q ss_pred             CCHHHH----HHHHHHc-----CCcEEEecCCCCCCHHH
Q 029029          133 VTAEEA----QAYAQEN-----GLFFMETSAKTATNVND  162 (200)
Q Consensus       133 ~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (200)
                      ...+++    ..+....     +++++++||++|.|+++
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            333333    3333333     45799999999999875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=3.1e-22  Score=161.10  Aligned_cols=155  Identities=16%  Similarity=0.176  Sum_probs=101.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchh--------hh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP--------MY   79 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~   79 (200)
                      ..++|+++|++|+|||||+|+|++.... ....+..+.+.....+.+++  ..+.+|||||.........        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3678999999999999999999975432 12222222333333444554  5689999999765443322        35


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN  159 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (200)
                      +..+|++++|+|.+++.+... ..|+..+.     ..|+++|+||+|+.......  ....+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999998655433 34444442     36999999999997654432  111111  356899999999999


Q ss_pred             HHHHHHHHHHhccccC
Q 029029          160 VNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       160 i~~~~~~l~~~~~~~~  175 (200)
                      +++++++|.+.+....
T Consensus       371 i~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          371 IDSLETAILEIVQTGK  386 (462)
T ss_dssp             HHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccC
Confidence            9999999999887654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.86  E-value=4.8e-22  Score=154.95  Aligned_cols=118  Identities=21%  Similarity=0.305  Sum_probs=100.1

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcC
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKAD  126 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D  126 (200)
                      .+.+++||++|++.++..|..++.+++++|+|+|+++          ..++.+...|+..+.... ..+.|+++++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5789999999999999999999999999999999998          456888888888887642 36799999999999


Q ss_pred             ccCCC---------------CCCHHHHHHHHH-----------HcCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          127 LLDAR---------------KVTAEEAQAYAQ-----------ENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       127 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +.+.+               ....+++..++.           ..++.+++|||+++.||+++|+++.+.+....
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            85322               356778888876           35677999999999999999999999887654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=8.8e-21  Score=156.46  Aligned_cols=163  Identities=19%  Similarity=0.244  Sum_probs=114.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCc--ccCc-----c------cCcceeeEE----EEEEEE-CCeEEEEEEEeCCCc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF-----Q------ESTIGAAFF----SQTLAV-NDATVKFEIWDTAGQ   69 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~--~~~~-----~------~~~~~~~~~----~~~~~~-~~~~~~~~i~D~~G~   69 (200)
                      .+-.+|+++|+.++|||||+++|+...  ....     .      ....|.+..    ...... ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456799999999999999999998631  1100     0      001122221    111111 455789999999999


Q ss_pred             cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC--
Q 029029           70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL--  147 (200)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  147 (200)
                      .++...+...+..+|++|+|+|.++..+......|.....    .++|+++++||+|+.+.+  ......++....++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9998888889999999999999998766666666654432    468999999999986532  22334555555666  


Q ss_pred             -cEEEecCCCCCCHHHHHHHHHHhccccCC
Q 029029          148 -FFMETSAKTATNVNDIFYEIAKRLPRVQP  176 (200)
Q Consensus       148 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (200)
                       .++++||++|.|++++++++.+.+.....
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p~~  187 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPPPKG  187 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence             48999999999999999999999876543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=3.8e-22  Score=161.13  Aligned_cols=158  Identities=17%  Similarity=0.179  Sum_probs=104.2

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCC--------ccccccchhh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG--------QERYHSLAPM   78 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~   78 (200)
                      +....+|+|+|.+|||||||+|+|++.... ....+.|++...........+..+++|||||        ++.+......
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            345679999999999999999999965543 4556677777777777766677899999999        5666677778


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCC-cEEEecCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTA  157 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (200)
                      ++..+|++|+|+|..+..+  ....|+..+...  .++|+++|+||+|+.+...    ....+. ..+. ..+++||++|
T Consensus        99 ~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTC
T ss_pred             hHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccc
Confidence            8899999999999876422  223344333332  5789999999999754321    111111 2233 4679999999


Q ss_pred             CCHHHHHHHHHHhcccc
Q 029029          158 TNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~  174 (200)
                      .|+.++++++.+.+...
T Consensus       170 ~gv~~L~~~i~~~l~~~  186 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKNI  186 (456)
T ss_dssp             TTHHHHHHHHHTTGGGS
T ss_pred             cchHHHHHHHHhhcccc
Confidence            99999999999887654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=3.3e-23  Score=168.89  Aligned_cols=163  Identities=17%  Similarity=0.196  Sum_probs=112.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +..+|+++|++++|||||+++|.+..+.....+..+.+........+ .+..++||||||++.+...+..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            56889999999999999999999766544333333222222222221 23479999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC-HHHHHHH---HHHc--CCcEEEecCCCCCCHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-AEEAQAY---AQEN--GLFFMETSAKTATNVND  162 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~  162 (200)
                      |+|.++...... ..++..+.   ..++|+++++||+|+.+.+... ...+..+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt-~e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQT-VESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHH-HHHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHH-HHHHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            999998543322 22333333   2468999999999986532211 1111111   1111  24799999999999999


Q ss_pred             HHHHHHHhccccCC
Q 029029          163 IFYEIAKRLPRVQP  176 (200)
Q Consensus       163 ~~~~l~~~~~~~~~  176 (200)
                      ++++|...+....+
T Consensus       158 Lle~I~~l~~~~~~  171 (537)
T 3izy_P          158 LAEATIALAEMLEL  171 (537)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHhhhcccc
Confidence            99999988765443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=7.1e-21  Score=153.04  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=104.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE--EEEEEECCeEEEEEEEeCCCccccccc-----------
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQERYHSL-----------   75 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------   75 (200)
                      ..++|+|+|++|+|||||+++|++.... ...+..|++..  ...+.+++.  .+.+|||+|.......           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            4689999999999999999999965431 22333343332  234445554  6899999997432211           


Q ss_pred             -hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH-HH----HcCCcE
Q 029029           76 -APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY-AQ----ENGLFF  149 (200)
Q Consensus        76 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-~~----~~~~~~  149 (200)
                       ...++..+|++++++|.+++.+... ..+...+..   .++|+++++||.|+.+.+....++.... ..    ....++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             1235678999999999987654433 122222322   4789999999999976544334333222 22    235789


Q ss_pred             EEecCCCCCCHHHHHHHHHHhccccC
Q 029029          150 METSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +++||++|.|++++|+.+.+.+....
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            99999999999999999988766543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=8.8e-21  Score=152.30  Aligned_cols=156  Identities=18%  Similarity=0.196  Sum_probs=106.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCccc--C---------------------------cccCcceeeEEEEEEEECCe
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E---------------------------FQESTIGAAFFSQTLAVNDA   57 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (200)
                      ....++|+++|++++|||||+++|++....  .                           ......|.+.......+...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            356799999999999999999999653210  0                           00111244444444445555


Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCC
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKADLLDA  130 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~  130 (200)
                      ...+.+|||||++++...+...+..+|++|+|+|.++...   +   .+..+.+.....   .++| +++++||+|+...
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCccc
Confidence            6789999999999998888889999999999999987532   1   122333333333   3456 8999999998532


Q ss_pred             C--C----CCHHHHHHHHHHcC------CcEEEecCCCCCCHHHHHH
Q 029029          131 R--K----VTAEEAQAYAQENG------LFFMETSAKTATNVNDIFY  165 (200)
Q Consensus       131 ~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  165 (200)
                      .  +    ...+++..+++..+      ++++++||++|.|++++++
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            1  1    11223444444444      5799999999999999654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.86  E-value=3.1e-21  Score=150.37  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=93.6

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA  125 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~  125 (200)
                      ..+.+++|||+|++.++..+..++++++++|+|+|++          +..++.+...|+..+.... ..+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5789999999999999999999999999999999998          7788999999998887643 3679999999999


Q ss_pred             CccCCCC--C-------------------CHHHHHHHHHH----------------cCCcEEEecCCCCCCHHHHHHHHH
Q 029029          126 DLLDARK--V-------------------TAEEAQAYAQE----------------NGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus       126 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |+.+.+.  +                   ..+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854221  1                   14556666432                123468999999999999999999


Q ss_pred             Hhcccc
Q 029029          169 KRLPRV  174 (200)
Q Consensus       169 ~~~~~~  174 (200)
                      +.+...
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.86  E-value=5.9e-22  Score=157.83  Aligned_cols=164  Identities=15%  Similarity=0.209  Sum_probs=115.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhC--------cccCc-------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKG--------QFIEF-------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      .....++|+++|++++|||||+++|++.        .+...       .....|.+.......++.....+.+|||||++
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            4456799999999999999999999863        11100       00123333333444444455789999999999


Q ss_pred             ccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHcC
Q 029029           71 RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQENG  146 (200)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~  146 (200)
                      ++...+...+..+|++|+|+|.++... .+..+++..+...   ++| +++++||+|+.+....   ..+++..+++..+
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            988888888999999999999987542 3445566555543   567 8899999998742111   1234555666655


Q ss_pred             -----CcEEEecCCCCCC------------------HHHHHHHHHHhccc
Q 029029          147 -----LFFMETSAKTATN------------------VNDIFYEIAKRLPR  173 (200)
Q Consensus       147 -----~~~~~~Sa~~~~~------------------i~~~~~~l~~~~~~  173 (200)
                           ++++++||++|.|                  +.++++.|.+.+..
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence                 6899999999987                  78888888887754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=2.2e-21  Score=154.14  Aligned_cols=161  Identities=16%  Similarity=0.152  Sum_probs=112.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcc-------cC-------cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQF-------IE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS   74 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   74 (200)
                      +.+||+++|+.++|||||+++|++...       ..       ......|.+.......+......+.+|||||++++..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            468999999999999999999986311       00       0011223343333444444557899999999999888


Q ss_pred             chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCC---CCHHHHHHHHHHcC----
Q 029029           75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARK---VTAEEAQAYAQENG----  146 (200)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----  146 (200)
                      .+...+..+|++|+|+|.++.... +..+++..+..   .++| +++++||+|+.+...   ...++++.+++..+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            888889999999999999985322 22333344433   3577 789999999864211   11234566666665    


Q ss_pred             -CcEEEecCCCCCC----------HHHHHHHHHHhccc
Q 029029          147 -LFFMETSAKTATN----------VNDIFYEIAKRLPR  173 (200)
Q Consensus       147 -~~~~~~Sa~~~~~----------i~~~~~~l~~~~~~  173 (200)
                       ++++++||++|.|          +.++++.|.+.+..
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence             5899999999764          89999999887764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.4e-21  Score=139.14  Aligned_cols=116  Identities=17%  Similarity=0.262  Sum_probs=88.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCc---ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEF---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG-   82 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   82 (200)
                      ....++|+|+|++|+|||||+++|.+..+...   ..++.         ..+.....+.+|||||++.+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS---------AADYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce---------eeeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35678999999999999999999998765331   11111         112245679999999999888888887766 


Q ss_pred             ---CcEEEEEEeCC-CHHHHHHHHHHHHHHHHh----CCCCCeEEEEEeCcCccCCC
Q 029029           83 ---AAAAIIVYDIT-NQASFERAKKWVQELQAQ----GNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~~~ivv~nK~D~~~~~  131 (200)
                         +|++|+|+|.+ +++++..+..|+..+...    ...+.|+++|+||+|+.+..
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               89999999999 889999888888776553    23589999999999997654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.7e-22  Score=156.51  Aligned_cols=162  Identities=13%  Similarity=0.212  Sum_probs=89.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccC-cc--------cCcceeeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-------ER   71 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   71 (200)
                      ...++|+|+|++|+|||||+++|++..... ..        .++.+...........+....+++|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987643321 11        123333333333344556678999999998       55


Q ss_pred             cccchh-------hhhcCC-------------cEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           72 YHSLAP-------MYYRGA-------------AAAIIVYDITNQASFERAK-KWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        72 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                      +..++.       .++..+             |+++|+++.. ..++..+. .|+..+    ..++|+++|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            666654       444433             3455555542 22344432 344433    357899999999998765


Q ss_pred             CCCCH--HHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          131 RKVTA--EEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       131 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +.+..  +.+..+++.++++++++||+++.+ ++.|.++.+.+....
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            44433  456666777889999999999998 888888777776544

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=1.9e-21  Score=158.91  Aligned_cols=118  Identities=14%  Similarity=0.138  Sum_probs=82.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCc------------------ccCc--ccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQ------------------FIEF--QESTIGAAFFSQTLAVNDATVKFEIWDTA   67 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   67 (200)
                      .+..+|+|+|++|+|||||+++|+...                  ....  .....|.+.......+...+..+.+||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            356899999999999999999997211                  0000  00012223223333333345789999999


Q ss_pred             CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      |+..+...+..++..+|++|+|+|.++.........| ..+..   .++|+++|+||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            9999999999999999999999999986554443333 33333   4689999999999854

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=8e-21  Score=146.16  Aligned_cols=119  Identities=18%  Similarity=0.266  Sum_probs=98.4

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA  125 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~  125 (200)
                      ..+.+++||++|++.++..|..++++++++|+|+|++          +..++.+...|+..+.... ..+.|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            3478999999999999999999999999999999664          5667888888888876643 3679999999999


Q ss_pred             CccCCC----------------CCCHHHHHHHHH----------HcCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          126 DLLDAR----------------KVTAEEAQAYAQ----------ENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       126 D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      |+.+.+                ..+.+++.+++.          ..++.+++|||+++.||+.+|..+.+.+....
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            986533                467777877743          34567889999999999999999999887654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=2.3e-21  Score=152.30  Aligned_cols=146  Identities=8%  Similarity=0.064  Sum_probs=105.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      +|+++|++++|||||+++|+      ....+...    ....+......+.+|||||++++.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~----~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDI----TMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSS----EEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEe----eEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999997      11122221    222334445679999999999988777788899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEe-CcCccCCCCCCH--HHHHHHHHHc---CCcEEE--ecCCC---CCC
Q 029029           92 ITNQASFERAKKWVQELQAQGNPNMVM-ALAGN-KADLLDARKVTA--EEAQAYAQEN---GLFFME--TSAKT---ATN  159 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~~~~~~~~~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~  159 (200)
                       ++ ..+.+..+++..+...   ++|. ++++| |+|+ +.+....  ++++.+++..   .+++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             54 3455556666665554   4566 88899 9998 4322111  3444444443   368999  99999   999


Q ss_pred             HHHHHHHHHHhccc
Q 029029          160 VNDIFYEIAKRLPR  173 (200)
Q Consensus       160 i~~~~~~l~~~~~~  173 (200)
                      ++++++.|.+.+..
T Consensus       167 i~~L~~~l~~~~~~  180 (370)
T 2elf_A          167 VDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc
Confidence            99999999988754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=2.2e-20  Score=154.35  Aligned_cols=159  Identities=20%  Similarity=0.227  Sum_probs=107.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcc----cCcceeeEEEEEE------------EECCeEEEEEEEeCCCccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTL------------AVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~   71 (200)
                      .+..+|+++|++++|||||+++|++.......    .++.+..+.....            ..+.....++||||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            46789999999999999999999965443211    1222222211100            0001122599999999999


Q ss_pred             cccchhhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC----H--------H
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT----A--------E  136 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~----~--------~  136 (200)
                      +...+...+..+|++|+|+|+++   +++++.+.    .+..   .++|+++++||+|+.......    .        +
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99998888999999999999998   66655433    2222   468999999999986421110    0        0


Q ss_pred             -----------HHHHHHHHcC---------------CcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          137 -----------EAQAYAQENG---------------LFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       137 -----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                                 +........+               ++++++||++|.|+++++++|...+..
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                       1111111222               379999999999999999999987653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.84  E-value=1.2e-21  Score=157.27  Aligned_cols=154  Identities=21%  Similarity=0.239  Sum_probs=103.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhC--cccCcc---------------------------cCcceeeEEEEEEEECCeE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEFQ---------------------------ESTIGAAFFSQTLAVNDAT   58 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   58 (200)
                      ...++|+++|+.++|||||+++|++.  .+....                           ....|.+.......++...
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45789999999999999999999864  221100                           0012233333333344455


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHH-------HHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-------VQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-------~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      ..+.+|||||++++...+..++..+|++|+|+|.++ .+|+....|       +......  .-.++++++||+|+.+..
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence            789999999999998888889999999999999998 566644332       2222222  123589999999987521


Q ss_pred             ------CCCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHH
Q 029029          132 ------KVTAEEAQAYAQENG-----LFFMETSAKTATNVNDIF  164 (200)
Q Consensus       132 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  164 (200)
                            ....++++.+++..+     ++++++||++|.|+.+++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence                  111344666666665     679999999999998544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=1.3e-20  Score=151.32  Aligned_cols=153  Identities=22%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc--cCcc----------cCc-------------------ceeeEEEEEEEECC
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IEFQ----------EST-------------------IGAAFFSQTLAVND   56 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~~~----------~~~-------------------~~~~~~~~~~~~~~   56 (200)
                      ...++|+++|+.++|||||+++|++...  ....          ..+                   .|.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4568999999999999999999986531  0000          001                   11121112222333


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC---
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV---  133 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~---  133 (200)
                      ....+.+|||||++++...+..++..+|++|+|+|.++.. +.+..+++..+...  ...|+++++||+|+.+....   
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence            4567999999999999888888899999999999998853 23334455444443  22369999999998653211   


Q ss_pred             -CHHHHHHHHHHcC-----CcEEEecCCCCCCHHHH
Q 029029          134 -TAEEAQAYAQENG-----LFFMETSAKTATNVNDI  163 (200)
Q Consensus       134 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  163 (200)
                       ..++...+++..+     ++++++||++|.|++++
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence             1234556666676     67999999999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.3e-21  Score=159.38  Aligned_cols=155  Identities=24%  Similarity=0.221  Sum_probs=103.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcc-----------------------------cCcceeeEEEEEEEECCe
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-----------------------------ESTIGAAFFSQTLAVNDA   57 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   57 (200)
                      ....+||+++|++++|||||+++|++....-..                             ....|++.......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            356899999999999999999999865221100                             001233333333333445


Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---F---ERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      ...++||||||++.+...+..++..+|++|+|+|++++..   +   ......+......  ...|+++|+||+|+.+..
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchh
Confidence            5689999999999998888888999999999999987521   0   1222222222222  224599999999987632


Q ss_pred             CCCH----HHHHHHHHHc-----CCcEEEecCCCCCCHHHH
Q 029029          132 KVTA----EEAQAYAQEN-----GLFFMETSAKTATNVNDI  163 (200)
Q Consensus       132 ~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~  163 (200)
                      ....    +++..++...     +++++++||++|.|+.++
T Consensus       322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2222    2233444443     358999999999999865

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.83  E-value=8.3e-21  Score=153.20  Aligned_cols=155  Identities=14%  Similarity=0.152  Sum_probs=103.4

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCc--ccCc---------------------------ccCcceeeEEEEEEEECC
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF---------------------------QESTIGAAFFSQTLAVND   56 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~   56 (200)
                      .....++|+++|++++|||||+++|++..  +...                           .....|.+.......+..
T Consensus         3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~   82 (458)
T 1f60_A            3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET   82 (458)
T ss_dssp             CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence            34568999999999999999999998641  1100                           000112222222223334


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEeCcCccC
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNMV-MALAGNKADLLD  129 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~  129 (200)
                      ....+.+|||||++++...+..++..+|++|+|+|.++..   +|+   +..+++.....   .++| +++++||+|+.+
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence            4578999999999998888888899999999999998753   121   23333333333   2454 899999999873


Q ss_pred             CCC----CCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHH
Q 029029          130 ARK----VTAEEAQAYAQENG-----LFFMETSAKTATNVNDI  163 (200)
Q Consensus       130 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  163 (200)
                      ...    ...+++..+++..+     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            211    11234555555555     68999999999998743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=2.2e-20  Score=161.57  Aligned_cols=164  Identities=15%  Similarity=0.156  Sum_probs=113.0

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc-------cC-------cccCcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF-------IE-------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      .....++|+++|++++|||||+++|++...       ..       ......|.+.......++.....+.+|||||+++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            345679999999999999999999986311       00       0112333333333334444567899999999999


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHcC-
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQENG-  146 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-  146 (200)
                      +...+...+..+|++|+|+|.++... .+..+++..+...   ++| +++++||+|+.+....   ..+++..+++..+ 
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            88888888999999999999987532 2334455544443   567 7899999998752211   1234566666665 


Q ss_pred             ----CcEEEecCCCC--------CCHHHHHHHHHHhccc
Q 029029          147 ----LFFMETSAKTA--------TNVNDIFYEIAKRLPR  173 (200)
Q Consensus       147 ----~~~~~~Sa~~~--------~~i~~~~~~l~~~~~~  173 (200)
                          ++++++||++|        .|+.++++.|.+.+..
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence                68999999999        4689999999887753

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=2.2e-21  Score=157.02  Aligned_cols=154  Identities=19%  Similarity=0.247  Sum_probs=104.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+..+|+++|+.++|||||+++|.+..+.....+..+.+...  ..+...+..+.||||||++.+...+...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~--~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA--YHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSC--CCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEE--EEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            467899999999999999999998755433222111111111  122222357899999999999999888899999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC--CCCHH--HHHHHHHHc--CCcEEEecCCCCC
Q 029029           88 IVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR--KVTAE--EAQAYAQEN--GLFFMETSAKTAT  158 (200)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~Sa~~~~  158 (200)
                      +|+|.++   +++.+.    +.....   .+.|+++++||+|+.+.+  .+..+  ....+...+  .++++++||++|.
T Consensus        80 LVVda~~g~~~qT~e~----l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEA----IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEEETTTBSCTTTHHH----HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeecccCccHHHHHH----HHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            9999987   333322    233332   468899999999986421  11100  000011122  2689999999999


Q ss_pred             CHHHHHHHHHHh
Q 029029          159 NVNDIFYEIAKR  170 (200)
Q Consensus       159 ~i~~~~~~l~~~  170 (200)
                      |+++++++|...
T Consensus       153 gI~eLle~I~~~  164 (501)
T 1zo1_I          153 GIDELLDAILLQ  164 (501)
T ss_dssp             TCTTHHHHTTTT
T ss_pred             Ccchhhhhhhhh
Confidence            999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=5e-20  Score=133.93  Aligned_cols=157  Identities=15%  Similarity=0.176  Sum_probs=99.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----------cccchh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----------YHSLAP   77 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   77 (200)
                      ....+|+++|++|||||||+++|++..+.....++.|.+........++   .+.+||+||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            3467899999999999999999986654444556666555433333332   588999999742          222223


Q ss_pred             hhh---cCCcEEEEEEeCCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC--CCHHHHHHHHHHcC--Cc
Q 029029           78 MYY---RGAAAAIIVYDITNQASFER--AKKWVQELQAQGNPNMVMALAGNKADLLDARK--VTAEEAQAYAQENG--LF  148 (200)
Q Consensus        78 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~  148 (200)
                      .++   ..++++++++|++++.+...  +..|+   . .  .+.|++++.||+|+....+  ...+.++.++...+  +.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~-~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V-D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H-H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---H-H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            344   47899999999987544322  22232   2 2  4678999999999865321  12344555555554  46


Q ss_pred             EEEecCCCCCCHHHHHHHHHHhccc
Q 029029          149 FMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ++++||+++.++++++++|.+.+.+
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhh
Confidence            8899999999999999999987654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=5e-21  Score=154.84  Aligned_cols=154  Identities=19%  Similarity=0.213  Sum_probs=89.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhC--cccCc---------------------c------cCcceeeEEEEEEEECCeE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF---------------------Q------ESTIGAAFFSQTLAVNDAT   58 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~---------------------~------~~~~~~~~~~~~~~~~~~~   58 (200)
                      ...++|+++|+.++|||||+++|+..  .+...                     .      ....|.+.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45789999999999999999999752  11100                     0      0011222222111222234


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCC
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SFE---RAKKWVQELQAQGNPNMV-MALAGNKADLLDAR  131 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~  131 (200)
                      ..+.+|||||+++|...+...+..+|++|+|+|.++..   +|+   +..+.+.....   .++| +++++||+|+.+..
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTCS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCEEEEEEECccCCCcc
Confidence            68999999999999888888899999999999999852   222   12222222222   4566 99999999985421


Q ss_pred             ------CCCHHHHHHHHHHc-------CCcEEEecCCCCCCHHHHH
Q 029029          132 ------KVTAEEAQAYAQEN-------GLFFMETSAKTATNVNDIF  164 (200)
Q Consensus       132 ------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~  164 (200)
                            ....+++..+++..       +++++++||++|.|+.+++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                  01123455666555       4569999999999998754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.81  E-value=4e-20  Score=142.76  Aligned_cols=117  Identities=17%  Similarity=0.263  Sum_probs=95.5

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCc
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT----------NQASFERAKKWVQELQAQG-NPNMVMALAGNKA  125 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~  125 (200)
                      ..+.+++||++|++.++..|..++++++++|+|+|++          +..++.+...|+..+.... ..+.|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            4578999999999999999999999999999999998          6778888888888887653 3689999999999


Q ss_pred             CccCCC---------------CCCHHHHHHHHHHc---------------------------CCcEEEecCCCCCCHHHH
Q 029029          126 DLLDAR---------------KVTAEEAQAYAQEN---------------------------GLFFMETSAKTATNVNDI  163 (200)
Q Consensus       126 D~~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~Sa~~~~~i~~~  163 (200)
                      |+.+.+               ....+++.+++...                           .+.+++|||+++.+|+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            985421               12455665554332                           366889999999999999


Q ss_pred             HHHHHHhccc
Q 029029          164 FYEIAKRLPR  173 (200)
Q Consensus       164 ~~~l~~~~~~  173 (200)
                      |..+.+.+..
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998876

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=2.3e-20  Score=142.90  Aligned_cols=161  Identities=18%  Similarity=0.163  Sum_probs=100.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcc----cCccee----------------------eEE-------------
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGA----------------------AFF-------------   48 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~----~~~~~~----------------------~~~-------------   48 (200)
                      ....+|+|+|.+|+|||||+++|++..+.+..    ...++.                      +..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45679999999999999999999987653211    111110                      000             


Q ss_pred             ----------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhhhcCCcEEE-EEEeCCCHHHHHHHHH
Q 029029           49 ----------SQTLAVN-DATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAI-IVYDITNQASFERAKK  103 (200)
Q Consensus        49 ----------~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  103 (200)
                                .....+. .....+.+|||||...             +......++..++.+| +|+|.++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      0000000 0125799999999642             3345556777888666 7999987544333223


Q ss_pred             HHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH--cC-CcEEEecCCCCCCHHHHHHHHHHhc
Q 029029          104 WVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE--NG-LFFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       104 ~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ++..+.   ..+.|+++|+||+|+.+......+.+......  .+ .+++++||++|.|++++++++.+..
T Consensus       184 ~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          184 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            444332   35789999999999976543222222211001  12 3577899999999999999988743

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=3.2e-19  Score=134.22  Aligned_cols=126  Identities=15%  Similarity=0.100  Sum_probs=83.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc------
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR------   81 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------   81 (200)
                      ...++|+++|.+|+|||||+++|++..... ..+..+++.......+...+..+.+|||||+..+......+++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            467999999999999999999999766422 2222222222222222223458999999999877665555443      


Q ss_pred             ---CCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCC--CCeEEEEEeCcCccCCCCCCH
Q 029029           82 ---GAAAAIIVYDITNQASFERA-KKWVQELQAQGNP--NMVMALAGNKADLLDARKVTA  135 (200)
Q Consensus        82 ---~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~--~~~~ivv~nK~D~~~~~~~~~  135 (200)
                         .+|++++|++++... +... ..|++.+......  ..|+++|+||+|+...+....
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  171 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY  171 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence               789999999987643 3332 4666666554222  348999999999865444443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.79  E-value=1.5e-20  Score=155.72  Aligned_cols=163  Identities=20%  Similarity=0.242  Sum_probs=90.3

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccC--c---------------------------ccCcceeeEEEEEEEECCe
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE--F---------------------------QESTIGAAFFSQTLAVNDA   57 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~   57 (200)
                      ....++|+++|++++|||||+++|++....-  .                           .....|++.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            3457899999999999999999997421100  0                           0012234444444444445


Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH---HH---HHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCC
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA---SF---ERAKKWVQELQAQGNPNMV-MALAGNKADLLDA  130 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~  130 (200)
                      ...+.||||||++.+...+...+..+|++|+|+|.+++.   .+   ......+..+...   ++| +++|+||+|+.+.
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccc
Confidence            678999999999999888888899999999999998532   11   1122223333333   455 8999999998652


Q ss_pred             CCCCH----HHHHHHH-HHcCC-----cEEEecCCCCCCHH--------------HHHHHHHHhcc
Q 029029          131 RKVTA----EEAQAYA-QENGL-----FFMETSAKTATNVN--------------DIFYEIAKRLP  172 (200)
Q Consensus       131 ~~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~--------------~~~~~l~~~~~  172 (200)
                      .....    .++..+. +..++     +++++||++|.|+.              .+++.|.+.+.
T Consensus       331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            21111    2233333 33344     69999999999998              68888776554

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.79  E-value=1.2e-18  Score=146.22  Aligned_cols=117  Identities=11%  Similarity=0.057  Sum_probs=82.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCccc-------------C---cceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-------------S---TIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      .+..+|+|+|+.|+|||||+++|++........             +   ..+.++......+....+.+++|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            446789999999999999999998532210000             0   112333333333333457899999999999


Q ss_pred             cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           72 YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      +...+..++..+|++++|+|..+.... ....++..+..   .++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHH---ccCCEEEEecCCchh
Confidence            888888899999999999998764322 22344444444   368999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=2.1e-18  Score=136.91  Aligned_cols=162  Identities=19%  Similarity=0.151  Sum_probs=108.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc----cccchhh---hhcCC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER----YHSLAPM---YYRGA   83 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~   83 (200)
                      ..|+|+|++|||||||++.|.+........+..+.......+..++ ...+.+||+||...    ...+...   .+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999986532111111111111122222222 35689999999742    2222222   24579


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029           84 AAAIIVYDITNQASFERAKKWVQELQAQGN--PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      +.++.++|++ ...+..+..+.+++.....  ...|.++++||+|+...  ...+.+....+..+.+++.+||+++.|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999997 4456666666666555421  35789999999998653  22344455555567899999999999999


Q ss_pred             HHHHHHHHhccccCC
Q 029029          162 DIFYEIAKRLPRVQP  176 (200)
Q Consensus       162 ~~~~~l~~~~~~~~~  176 (200)
                      +++++|.+.+.....
T Consensus       314 eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          314 ALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999887654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.77  E-value=2.6e-18  Score=144.68  Aligned_cols=120  Identities=17%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCccc--C--cc------------cCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFI--E--FQ------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ...+..+|+|+|+.|+|||||+++|+.....  .  ..            ....+.+.......+....+.+.+|||||+
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~   87 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH   87 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence            3466899999999999999999999842110  0  00            001122222222222223578999999999


Q ss_pred             cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           70 ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      ..+...+..++..+|++|+|+|.++..++.....|.. +..   .++|+++++||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9988888889999999999999998766555444433 333   3689999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=1e-19  Score=139.37  Aligned_cols=164  Identities=15%  Similarity=0.206  Sum_probs=86.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhC-cccCcc--------cCcceeeEEEEEEEECCeEEEEEEEeCCCc-------c
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKG-QFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-------E   70 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~   70 (200)
                      ....++|+|+|++|+|||||+++|.+. .++...        .++.............+....+++||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            356789999999999999999998864 332221        111111111122222344568999999997       4


Q ss_pred             ccccchh-------hhhcC-------------CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           71 RYHSLAP-------MYYRG-------------AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        71 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                      .+.....       .++..             ++++++..+++. .+++...  .+.+.... ...++++|+||.|+...
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence            4444443       33222             344555555432 1122222  12233322 45789999999998764


Q ss_pred             CCC--CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          131 RKV--TAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       131 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      +++  ..+++..+++.++++++++||+++ +++++|.++.+.+....
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            332  235678888889999999999999 99999999999886543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=6.6e-18  Score=138.19  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc-cCc-------------------ccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDTA   67 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   67 (200)
                      .+..+|+|+|++|+|||||+++|+.... ...                   .....|.+.......+....+.+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            4578999999999999999999986311 100                   00112222222222333345789999999


Q ss_pred             CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      |+..+...+..++..+|++|+|+|.++.... ....++...   ...++|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            9999888888899999999999999875321 122222322   235789999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.77  E-value=2.1e-18  Score=130.32  Aligned_cols=126  Identities=13%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhh-------h-
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM-------Y-   79 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~-   79 (200)
                      ...++|+++|.+|+|||||+++|++..... ..+..+++..............+.+|||||...+......       + 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            357999999999999999999999765421 2233333333333333334568999999998765433221       1 


Q ss_pred             -hcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCC--CCeEEEEEeCcCccCCCCCCH
Q 029029           80 -YRGAAAAIIVYDITNQASFERA-KKWVQELQAQGNP--NMVMALAGNKADLLDARKVTA  135 (200)
Q Consensus        80 -~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~--~~~~ivv~nK~D~~~~~~~~~  135 (200)
                       ...+|++++|+|++.. ++... ..|+..+......  ..|+++|+||+|+........
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~  174 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  174 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence             2469999999998653 23332 4666666554222  268999999999876544444

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=3e-19  Score=140.18  Aligned_cols=106  Identities=12%  Similarity=0.096  Sum_probs=76.0

Q ss_pred             EEEEEeCCCcccc-------------ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           60 KFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        60 ~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                      .+++|||||...+             ......++..+|++|+++|..+.....  ..|+..+......+.|+++|+||+|
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence            5899999998765             455667889999999999876432221  2444555554456789999999999


Q ss_pred             ccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029          127 LLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +.+......+.+.......+.+|+++++.++.++++.+...
T Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            98655555544544445567789999999988887765543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.75  E-value=6.8e-18  Score=142.28  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=77.3

Q ss_pred             EEEEEeCCCccc---cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029           60 KFEIWDTAGQER---YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE  136 (200)
Q Consensus        60 ~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (200)
                      .+.+|||||...   .......++..+|++|+|+|.+++.+......|...+..   .+.|+++|+||+|+......+.+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e  251 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD  251 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence            599999999654   334555678999999999999987666665555444322   36789999999998654311111


Q ss_pred             ----------HHHH-----HHHH--------cCCcEEEecCC--------------CCCCHHHHHHHHHHhccc
Q 029029          137 ----------EAQA-----YAQE--------NGLFFMETSAK--------------TATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       137 ----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~i~~~~~~l~~~~~~  173 (200)
                                .+..     +...        ...+++++||+              ++.|+++++.+|.+.+..
T Consensus       252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                      1111     1111        12369999999              999999999999887654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=137.07  Aligned_cols=163  Identities=17%  Similarity=0.210  Sum_probs=82.7

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcc--------cCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-----
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ--------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-----   73 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----   73 (200)
                      ....++|+|+|++|+|||||++.|++.......        .++.+.......+...+....+++||++|.....     
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            355788999999999999999999976542111        1111111111122223334579999999976431     


Q ss_pred             --c------------------chhhhhcCCcEEEEEEeCCCH-HHHHHH-HHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           74 --S------------------LAPMYYRGAAAAIIVYDITNQ-ASFERA-KKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        74 --~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~-~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                        .                  +...++.++++.+++|+.... .+++.. ..|+..+.    .++|+|+|+||+|+...+
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence              1                  112234455544444443321 233333 25665553    368999999999987654


Q ss_pred             CCCH--HHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          132 KVTA--EEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ++..  ..+...+..++++++++|++++.++.++|..+.+.+..
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf  227 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL  227 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence            4443  56777788889999999999999999999888876654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.75  E-value=1.1e-17  Score=141.04  Aligned_cols=125  Identities=17%  Similarity=0.163  Sum_probs=84.5

Q ss_pred             CCCCCCCccceeEEEECCCCCCHHHHHHHHHhC--cccCc--c------cC------cceeeEEEEEEEECCeEEEEEEE
Q 029029            1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKG--QFIEF--Q------ES------TIGAAFFSQTLAVNDATVKFEIW   64 (200)
Q Consensus         1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~~--~------~~------~~~~~~~~~~~~~~~~~~~~~i~   64 (200)
                      |+......+..+|+|+|++|+|||||+++|+..  .....  .      ..      ..+.+.......+......+.+|
T Consensus         1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~li   80 (693)
T 2xex_A            1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII   80 (693)
T ss_dssp             -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEE
T ss_pred             CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEE
Confidence            455555567899999999999999999999852  21100  0      00      11122211122222234789999


Q ss_pred             eCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        65 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      ||||+..+...+..++..+|++|+|+|.++..+......|. .+..   .++|+++|+||+|+..
T Consensus        81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            99999998888888999999999999999865555444443 3333   3689999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.74  E-value=5.1e-18  Score=130.80  Aligned_cols=113  Identities=14%  Similarity=0.108  Sum_probs=70.5

Q ss_pred             EEEEEEeCCCccc-------------cccchhhhhcCCcEEEEEEeCCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeC
Q 029029           59 VKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNK  124 (200)
Q Consensus        59 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~ivv~nK  124 (200)
                      ..+.+|||||...             +......++..+|++++|+|..+.... .....++..+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4699999999753             334455678899999999997432211 1111222222   2357899999999


Q ss_pred             cCccCCCCCCHHHHHHHHHHcCCcEEEecCC---C---CCCHHHHHHHHHHhcccc
Q 029029          125 ADLLDARKVTAEEAQAYAQENGLFFMETSAK---T---ATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~l~~~~~~~  174 (200)
                      +|+.+......+.+.......+..++++++.   +   +.|+.+++..+.+.+...
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            9997654322222221111122567777654   4   789999999988887654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=1.6e-18  Score=132.78  Aligned_cols=137  Identities=16%  Similarity=0.136  Sum_probs=109.4

Q ss_pred             HHHHHHHhCccc-CcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHH-HHHHHH
Q 029029           25 SLVLRFVKGQFI-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAK  102 (200)
Q Consensus        25 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  102 (200)
                      +|+.++..+.+. ..+.++.|..+. .....++   .+++||+  +++++.++..+++++|++|+|+|++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577777777777 778888884443 3322222   7999999  8899999999999999999999999987 688889


Q ss_pred             HHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          103 KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG--LFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       103 ~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      .|+..+..   .++|+++|+||+|+.+.+.  .++...+++.++  .+++++||++|.|++++|.++...+.
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv  172 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKIS  172 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEE
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeE
Confidence            99987765   4789999999999975433  245667777777  89999999999999999998765443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=1.1e-16  Score=135.09  Aligned_cols=120  Identities=16%  Similarity=0.147  Sum_probs=82.3

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCc--ccCc--c------------cCcceeeEEEEEEEE-------CCeEEEEE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQ--FIEF--Q------------ESTIGAAFFSQTLAV-------NDATVKFE   62 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~--~~~~--~------------~~~~~~~~~~~~~~~-------~~~~~~~~   62 (200)
                      ...+..+|+|+|+.|+|||||+++|+...  ....  .            ....+.+.......+       ++..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            44567899999999999999999997531  1100  0            001122222222222       22348899


Q ss_pred             EEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        63 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +|||||+.++...+..++..+|++|+|+|.++.........| .....   .++|+++++||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            999999999888888899999999999999986444333333 33322   4689999999999854

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=8.3e-19  Score=138.87  Aligned_cols=83  Identities=20%  Similarity=0.107  Sum_probs=46.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEE----EE-------------------EECC-eEEEEEEEeC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ----TL-------------------AVND-ATVKFEIWDT   66 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~----~~-------------------~~~~-~~~~~~i~D~   66 (200)
                      ++|+|+|.+|+|||||+|+|++....  ....++++....    ..                   .+++ ....+++|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~--~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVE--IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            58999999999999999999976522  111111111111    11                   1122 2578999999


Q ss_pred             CCccc----cccchh---hhhcCCcEEEEEEeCCCH
Q 029029           67 AGQER----YHSLAP---MYYRGAAAAIIVYDITNQ   95 (200)
Q Consensus        67 ~G~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   95 (200)
                      ||...    ...+..   .+++.+|++++|+|.++.
T Consensus        79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            99753    222222   346899999999999874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.72  E-value=1.1e-17  Score=130.76  Aligned_cols=117  Identities=15%  Similarity=0.232  Sum_probs=91.2

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcC
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKAD  126 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D  126 (200)
                      .+.+++|||+|++.++..|..++.+++++|+|+|+++          ..++.+...|+..+.... ..+.|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999998          678999888998887642 36799999999999


Q ss_pred             ccCCC----------------CCCHHHHHHHHH-----------HcCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          127 LLDAR----------------KVTAEEAQAYAQ-----------ENGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       127 ~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      +.+.+                ..+.+++..++.           ..++.+++|||+++.||+++|+++.+.+...
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence            86322                256777777652           3457789999999999999999999988654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.71  E-value=3.7e-17  Score=128.94  Aligned_cols=122  Identities=18%  Similarity=0.241  Sum_probs=97.7

Q ss_pred             EEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHHhC-CCCCeEE
Q 029029           51 TLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITN----------QASFERAKKWVQELQAQG-NPNMVMA  119 (200)
Q Consensus        51 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~~~i  119 (200)
                      .+.++  .+.+++|||+|++.++..|..++.+++++|+|||+++          ..++.++..|+..+.... ..+.|++
T Consensus       211 ~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii  288 (402)
T 1azs_C          211 KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI  288 (402)
T ss_dssp             EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred             EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence            34444  3889999999999999999999999999999999998          889999999999988753 4689999


Q ss_pred             EEEeCcCccCCCC---C---------------------------CHHHHHHHH-----HH--------cCCcEEEecCCC
Q 029029          120 LAGNKADLLDARK---V---------------------------TAEEAQAYA-----QE--------NGLFFMETSAKT  156 (200)
Q Consensus       120 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~  156 (200)
                      +|+||+|+.+.+.   .                           ..+++..++     ..        ..+.+++|||++
T Consensus       289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d  368 (402)
T 1azs_C          289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD  368 (402)
T ss_dssp             EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred             EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence            9999999854221   1                           134455553     22        245678999999


Q ss_pred             CCCHHHHHHHHHHhcccc
Q 029029          157 ATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (200)
                      +.||+++|.++.+.+...
T Consensus       369 ~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          369 TENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999998877654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=6.5e-17  Score=118.41  Aligned_cols=156  Identities=14%  Similarity=0.126  Sum_probs=94.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccC----ccee----------eEEEEEEEE----------------CCeE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES----TIGA----------AFFSQTLAV----------------NDAT   58 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~----~~~~----------~~~~~~~~~----------------~~~~   58 (200)
                      ...+|+|+|.+|+|||||+++|+..........    ..+.          .........                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            356899999999999999999986422110000    0000          000011100                1123


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA  138 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (200)
                      ..+.+|||+|+....   ..+....+.+++|+|..+...  ....+...      .+.|.++++||+|+.+......+..
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence            568899999851110   011125788999999876432  11111111      1367899999999865433456666


Q ss_pred             HHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          139 QAYAQEN--GLFFMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       139 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      ...+...  +.+++++||++|.|+++++++|.+.+....
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            6666554  468999999999999999999999876543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.66  E-value=5.1e-17  Score=127.20  Aligned_cols=105  Identities=12%  Similarity=0.066  Sum_probs=70.2

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--H
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--A  135 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~  135 (200)
                      ++.+.||||||...   .....+..+|++++|+|....+....+.       . .....|.++|+||+|+.+.....  .
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~-~~~~~p~ivVlNK~Dl~~~~~~~~~~  239 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K-GVLELADIVVVNKADGEHHKEARLAA  239 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T-TSGGGCSEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H-hHhhcCCEEEEECCCCcChhHHHHHH
Confidence            46799999999533   2334568999999999987654332211       1 11245899999999985432111  1


Q ss_pred             HHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          136 EEAQAYAQE-------NGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      .+.......       ++.+++++||++|.|+++++++|.+.+..
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            111111111       25789999999999999999999998765

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=6.2e-15  Score=114.83  Aligned_cols=162  Identities=15%  Similarity=0.030  Sum_probs=97.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERYH--   73 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~--   73 (200)
                      ++|+++|.+|+|||||+|+|++........+..+.........+++.               +..+++|||||.....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999986532111111111111112223321               2579999999986532  


Q ss_pred             --cc---hhhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHH-------------------------------
Q 029029           74 --SL---APMYYRGAAAAIIVYDITNQ----------ASFERAKKWVQE-------------------------------  107 (200)
Q Consensus        74 --~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~-------------------------------  107 (200)
                        .+   ...+++.+|++++|+|.++.          +++..+..+..+                               
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              12   22357899999999999751          122221110000                               


Q ss_pred             ---------HHH-------------------h-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC--
Q 029029          108 ---------LQA-------------------Q-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT--  156 (200)
Q Consensus       108 ---------i~~-------------------~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--  156 (200)
                               +..                   . ....+|+++++|+.|..-......+.++.++..++.+++++||+.  
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~  242 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIES  242 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHH
Confidence                     110                   0 123599999999998532112234667778888899999999653  


Q ss_pred             --------------------CCCHHHHHHHHHHhcc
Q 029029          157 --------------------ATNVNDIFYEIAKRLP  172 (200)
Q Consensus       157 --------------------~~~i~~~~~~l~~~~~  172 (200)
                                          ..|++.+.....+.+.
T Consensus       243 el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~  278 (363)
T 1jal_A          243 EIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN  278 (363)
T ss_dssp             HGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhC
Confidence                                3677777777666554

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.64  E-value=2e-15  Score=123.99  Aligned_cols=118  Identities=14%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCccc--------------------CcccCcceeeEEEEEEEECCeEEEEEEEeCC
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTA   67 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   67 (200)
                      .+..+|+|+|+.++|||||..+|+...-.                    ......-|.+.......+...++.+.++|||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            35688999999999999999999742110                    0001111222323333333455789999999


Q ss_pred             CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      |+.+|..-....++-+|++|+|+|..+.-..... ..++....   .++|.++++||+|...
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCCEEEEEECTTSCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH---hCCceEEEEecccchh
Confidence            9999999999999999999999999875332222 33344444   3689999999999754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.63  E-value=7.5e-17  Score=126.20  Aligned_cols=158  Identities=15%  Similarity=0.142  Sum_probs=91.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCccc----CcceeeEE------------------------------------
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE----STIGAAFF------------------------------------   48 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~------------------------------------   48 (200)
                      ...+|+|+|.+|+|||||+++|++..+.+...    ..++....                                    
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            45799999999999999999999766532111    11110000                                    


Q ss_pred             ---------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhhhcCCc-EEEEEEeCCCHHHHHHHHHH
Q 029029           49 ---------SQTLAVN-DATVKFEIWDTAGQER-------------YHSLAPMYYRGAA-AAIIVYDITNQASFERAKKW  104 (200)
Q Consensus        49 ---------~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  104 (200)
                               .....+. .....+.+|||||...             +......++..++ +++++.|.+......   .+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence                     0000000 1135699999999642             3334555665555 555566655422211   12


Q ss_pred             HHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH--HHHcC-CcEEEecCCCCCCHHHHHHHHHH
Q 029029          105 VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY--AQENG-LFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus       105 ~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      +..+......+.|+++|+||+|+.+......+.....  ....+ .+++.+||+++.|++++++++.+
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2223333345789999999999975433222211100  00012 24678999999999999999877

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.61  E-value=1.8e-15  Score=111.08  Aligned_cols=154  Identities=16%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEE------------EEEEEEC-Ce------------------
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFF------------SQTLAVN-DA------------------   57 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   57 (200)
                      +..+|+|+|.+|||||||+++|+...+.....++.+.++.            .....++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999976543322222222111            0111111 10                  


Q ss_pred             -EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029           58 -TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE  136 (200)
Q Consensus        58 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (200)
                       ...+.++|++|.-...   ..+-...+..+.++|.........  .....      ...|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence             1135555555521100   011123345566666432111000  00011      13678999999998654445666


Q ss_pred             HHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          137 EAQAYAQEN--GLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ....+++..  +.+++++||++|.|++++|+++.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            677776654  5789999999999999999999987754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=2.8e-15  Score=128.75  Aligned_cols=118  Identities=19%  Similarity=0.174  Sum_probs=84.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccC----------------cc--cCcceeeEEEEEEE------------ECC
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIE----------------FQ--ESTIGAAFFSQTLA------------VND   56 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------------~~--~~~~~~~~~~~~~~------------~~~   56 (200)
                      .....||+|+|+.++|||||+++|+......                ..  ..++..........            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4556899999999999999999998642100                00  01111111122222            234


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ..+.+++|||||+.++...+..+++.+|++|+|+|.++..++.....|.... .   .++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            5789999999999999999999999999999999999876666555454332 2   468999999999986

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.59  E-value=3.6e-15  Score=122.62  Aligned_cols=120  Identities=13%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECC------e----------------E------
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVND------A----------------T------   58 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~------~----------------~------   58 (200)
                      ....+|+|+|.+|+|||||+|+|++..... ...+..+++........+.      .                +      
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            457899999999999999999999776531 1112221111111000000      0                0      


Q ss_pred             -----------EEEEEEeCCCccc-----------cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC
Q 029029           59 -----------VKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM  116 (200)
Q Consensus        59 -----------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  116 (200)
                                 ..+.+|||||...           +......++..+|++|+|+|.++.........++..+..   .+.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence                       2589999999764           334555678899999999999875444455566655533   457


Q ss_pred             eEEEEEeCcCccCC
Q 029029          117 VMALAGNKADLLDA  130 (200)
Q Consensus       117 ~~ivv~nK~D~~~~  130 (200)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            89999999998653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=113.61  Aligned_cols=103  Identities=10%  Similarity=0.042  Sum_probs=63.2

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE  137 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~  137 (200)
                      ++.+.++||+|....   .......+|++++|+|.+.+.....+..   .+     ...|.++|+||+|+.+.... ...
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~  233 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI  233 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence            356899999996422   2345678999999999987533221111   11     24578899999998532110 001


Q ss_pred             HHHHHH----------HcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          138 AQAYAQ----------ENGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       138 ~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      ...+..          .+..+++.+||++|.|+++++++|.+.+.
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            122211          12457899999999999999999988764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.57  E-value=3.1e-14  Score=111.40  Aligned_cols=78  Identities=21%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccC-c-----ccCcceeeEEEEEEEECC-------------------eEEEEEEEe
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-F-----QESTIGAAFFSQTLAVND-------------------ATVKFEIWD   65 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~-----~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D   65 (200)
                      ++|+++|.+|+|||||+++|++..... .     ..+..+.      ..+++                   .+..+++||
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~------~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD   75 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV------VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD   75 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE------EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee------EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence            689999999999999999999754211 1     1122221      11211                   245799999


Q ss_pred             CCCccccc----cch---hhhhcCCcEEEEEEeCCC
Q 029029           66 TAGQERYH----SLA---PMYYRGAAAAIIVYDITN   94 (200)
Q Consensus        66 ~~G~~~~~----~~~---~~~~~~~d~~i~v~d~~~   94 (200)
                      |||.....    .+.   ...++.+|++++|+|.++
T Consensus        76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            99986532    122   234789999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.54  E-value=4.6e-15  Score=115.49  Aligned_cols=104  Identities=15%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA--  135 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~--  135 (200)
                      ++.+.+|||||.....   ......+|++++|+|.+.......+..   ..     .+.|.++|+||+|+.+......  
T Consensus       148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            3579999999965433   224689999999999976533211111   11     1357899999999864311110  


Q ss_pred             HHHHHHHHHc-------CCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          136 EEAQAYAQEN-------GLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       136 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      ++........       ..+++++||++|.|+++++++|.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1122222221       356899999999999999999998765

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.54  E-value=7.8e-14  Score=104.54  Aligned_cols=110  Identities=17%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             EEEEEEeCCCccccccchh------hhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           59 VKFEIWDTAGQERYHSLAP------MYYRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      +.+.+|||||.........      ..+.. +++|+++|...   +..+.....+......  ..+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence            5799999999875432211      13455 88888998753   2222222111111111  13578999999999865


Q ss_pred             CCCCCHHHHHHH----------------------------HHHcC--CcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          130 ARKVTAEEAQAY----------------------------AQENG--LFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       130 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ....  +++..+                            +...+  .+++++||+++.|+++++++|.+.+..
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            3211  111111                            12323  479999999999999999999887653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.54  E-value=5.5e-14  Score=110.07  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=95.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYY   80 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~   80 (200)
                      ....+|+++|.|++|||||+|+|++....  ....++++..+....+...+.+++++||||.....       ...-..+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            44679999999999999999999965432  33344444445444444445689999999963211       1112245


Q ss_pred             cCCcEEEEEEeCCCHHHH-HHHHHHHHHHHHhCCCCCeEEEEEeCcCccC--------CCCCCHHHHHHHHHHcCCcEEE
Q 029029           81 RGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLD--------ARKVTAEEAQAYAQENGLFFME  151 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~  151 (200)
                      +.+|++++|+|.++|... +.+...+..... .....|.++++||.|...        ......++.+.+...+.+..-+
T Consensus       148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~-~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGI-RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HHCSEEEEEEETTSHHHHHHHHHHHHHHTTE-EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             HhcCccccccccCccHHHHHHHHHHHHHhhH-hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            789999999999987432 222222222211 124567888999999643        1235566677766666653333


Q ss_pred             ecCCCCCCHHHHHHH
Q 029029          152 TSAKTATNVNDIFYE  166 (200)
Q Consensus       152 ~Sa~~~~~i~~~~~~  166 (200)
                      +....+...+++.+.
T Consensus       227 v~~~~nv~eddl~d~  241 (376)
T 4a9a_A          227 IAFRCDATVDDLIDV  241 (376)
T ss_dssp             EEECSCCCHHHHHHH
T ss_pred             eeecccCCHHHHHHH
Confidence            333344555555543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=5.6e-13  Score=112.87  Aligned_cols=117  Identities=17%  Similarity=0.121  Sum_probs=78.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCccc--------C--------cccCcceeeEEEEE--EEEC-----CeEEEEEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFI--------E--------FQESTIGAAFFSQT--LAVN-----DATVKFEIW   64 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~--------~--------~~~~~~~~~~~~~~--~~~~-----~~~~~~~i~   64 (200)
                      .+-.+|+|+|+.++|||||..+|+...-.        .        .....-|.+.....  ..+.     ..++.++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            45578999999999999999999742210        0        00111122332222  2222     246899999


Q ss_pred             eCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           65 DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        65 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ||||+-+|.......++-+|++|+|+|..+.-.... ...++....+   ++|.++++||+|..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH---TCCEEEEEECSSST
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEcccccc
Confidence            999999999999999999999999999987532222 2333334443   68899999999974

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.50  E-value=8.4e-15  Score=122.50  Aligned_cols=162  Identities=16%  Similarity=0.166  Sum_probs=108.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcc--cCc--------------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQF--IEF--------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS   74 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   74 (200)
                      .||+|+|+.++|||||..+|+...-  ...              ....-|.+.......+...++.++++||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4799999999999999999974211  100              000113344444444555667899999999999999


Q ss_pred             chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC---------------------
Q 029029           75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV---------------------  133 (200)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~---------------------  133 (200)
                      .....++-+|++|+|+|..+.-... ....++.....   ++|.++++||+|....+..                     
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~  158 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE  158 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence            9999999999999999998742222 23334444444   5788999999997432100                     


Q ss_pred             -----------CHHH-----------HHHH-------------------HHHcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          134 -----------TAEE-----------AQAY-------------------AQENGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       134 -----------~~~~-----------~~~~-------------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                                 ..+.           ...+                   ....-.|++..||.++.|++.+++.+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence                       0000           0000                   1111246788899999999999999999887


Q ss_pred             ccCC
Q 029029          173 RVQP  176 (200)
Q Consensus       173 ~~~~  176 (200)
                      ....
T Consensus       239 ~p~~  242 (638)
T 3j25_A          239 SSTH  242 (638)
T ss_dssp             CSGG
T ss_pred             Cccc
Confidence            6543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.47  E-value=1.4e-13  Score=105.34  Aligned_cols=112  Identities=18%  Similarity=0.100  Sum_probs=85.8

Q ss_pred             CeEEEEEEEe-CCC-----ccccccchhhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           56 DATVKFEIWD-TAG-----QERYHSLAPMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        56 ~~~~~~~i~D-~~G-----~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ++.+.+..+| +.|     ++++..+...++.++|++++|+|++++. ++..+.+|+..+..   .++|+++|+||+|+.
T Consensus        47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~  123 (302)
T 2yv5_A           47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL  123 (302)
T ss_dssp             TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC
T ss_pred             ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC
Confidence            3344555555 223     5677778888999999999999999886 78888899887665   478999999999997


Q ss_pred             CCCCCC-HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029          129 DARKVT-AEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       129 ~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      +...+. .+....+++..+++++++||++|.|++++++.+...
T Consensus       124 ~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          124 NEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             CccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCc
Confidence            543222 344556666778999999999999999998876544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.46  E-value=1.7e-13  Score=115.54  Aligned_cols=157  Identities=17%  Similarity=0.180  Sum_probs=94.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcc-cCcc-------------------------------------------
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTI-------------------------------------------   43 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-~~~~-------------------------------------------   43 (200)
                      ....+|+|+|.+++|||||+|+|++..+.+.. ....                                           
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            34569999999999999999999986552111 0000                                           


Q ss_pred             -----eeeE--EEEEEEECCeEEEEEEEeCCCcccc-------------ccchhhhh-cCCcEEEEEEeCCCHHHHHHHH
Q 029029           44 -----GAAF--FSQTLAVNDATVKFEIWDTAGQERY-------------HSLAPMYY-RGAAAAIIVYDITNQASFERAK  102 (200)
Q Consensus        44 -----~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  102 (200)
                           +++.  ....+..++ ...+.|+||||....             ......++ ..+|++++|+|.+.........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                 0000  000111111 124889999996431             12233333 5789999999998643222221


Q ss_pred             HHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH----cC-CcEEEecCCCCCCHHHHHHHHHHh
Q 029029          103 KWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE----NG-LFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       103 ~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      .++..+   ...+.|+++|+||+|+......... ... .+.    .+ .+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHH---CTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH---HhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            233333   2347899999999999765443322 111 011    12 246678999999999999998874

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.45  E-value=1.4e-13  Score=106.81  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHH
Q 029029           58 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEE  137 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~  137 (200)
                      +..+.|+||+|.....   ......+|.+++++|....+....+...   +.     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            4579999999975322   2345789999999998754322111111   11     13456778999974322111112


Q ss_pred             HHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          138 AQAYAQE----------NGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       138 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      .+.+...          +..+++.+||.++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2233221          1457889999999999999999988765

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=96.88  Aligned_cols=106  Identities=8%  Similarity=-0.029  Sum_probs=70.5

Q ss_pred             CCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHH---HHhC--CCCCeEEEEEeCc-CccCCCCCCHHHHHH
Q 029029           67 AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL---QAQG--NPNMVMALAGNKA-DLLDARKVTAEEAQA  140 (200)
Q Consensus        67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~~~~--~~~~~~ivv~nK~-D~~~~~~~~~~~~~~  140 (200)
                      +|+..++.+|..|+.++|++|||+|++|++.++ ....+..+   ....  ..+.|++|++||. |+.  ..++..++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence            378899999999999999999999999875433 33333222   2221  2578999999995 663  3456655544


Q ss_pred             HHHH----cCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          141 YAQE----NGLFFMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       141 ~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      ....    ....+..|||.+|+|+.+.++||.+.+....
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            4322    2334789999999999999999998886654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.34  E-value=5.4e-11  Score=93.71  Aligned_cols=88  Identities=18%  Similarity=0.103  Sum_probs=56.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCc
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQ   69 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~   69 (200)
                      ......+++|+|++|+|||||+|.|++... .....|..........+.+++.               +..+.+||+||.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            335567999999999999999999998554 2222222222222223333331               146899999995


Q ss_pred             cc-------cccchhhhhcCCcEEEEEEeCC
Q 029029           70 ER-------YHSLAPMYYRGAAAAIIVYDIT   93 (200)
Q Consensus        70 ~~-------~~~~~~~~~~~~d~~i~v~d~~   93 (200)
                      ..       +.......+..+|++++|+|..
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAF  126 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            42       2223334568899999999976

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.30  E-value=3.1e-12  Score=100.63  Aligned_cols=89  Identities=12%  Similarity=0.012  Sum_probs=50.6

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCccc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQER   71 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~   71 (200)
                      .....+|+++|.+|+|||||+++|++........+..+.+.....+.+++.               ...+++||+||...
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            345789999999999999999999976542222222222111222233321               23599999999765


Q ss_pred             ccc-------chhhhhcCCcEEEEEEeCCCH
Q 029029           72 YHS-------LAPMYYRGAAAAIIVYDITNQ   95 (200)
Q Consensus        72 ~~~-------~~~~~~~~~d~~i~v~d~~~~   95 (200)
                      ...       ....+++.+|++++|+|..+.
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            332       345567899999999998753

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.30  E-value=5.1e-12  Score=94.54  Aligned_cols=108  Identities=7%  Similarity=-0.060  Sum_probs=74.5

Q ss_pred             CCCccccccchhhhhcCCcEEEEEEeCCCHHHHH---HHHHHHHHHHHhC-CCCCeEEEEEeC-cCccCCCCCCHHHHHH
Q 029029           66 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFE---RAKKWVQELQAQG-NPNMVMALAGNK-ADLLDARKVTAEEAQA  140 (200)
Q Consensus        66 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~~~ivv~nK-~D~~~~~~~~~~~~~~  140 (200)
                      .+|+...+.+|..|+.++|++|||+|++|++.++   ++.+....+.... ..+.|++|++|| .|+..  .++..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            3578899999999999999999999999876433   2222212222221 257899999996 57743  455555544


Q ss_pred             HHHH----cCCcEEEecCCCCCCHHHHHHHHHHhccccC
Q 029029          141 YAQE----NGLFFMETSAKTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       141 ~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (200)
                      ....    ....+..|||.+|+|+.+.++||.+.+....
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            4322    2234789999999999999999999987654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.10  E-value=1.1e-11  Score=97.45  Aligned_cols=143  Identities=13%  Similarity=0.155  Sum_probs=86.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCc----ccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQ----FIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------AP   77 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   77 (200)
                      ..+|+++|.+|+|||||+|+|++..    .....+...|++..........   .+.++||||.......        ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            4689999999999999999999651    1122334445555555555443   2899999996432211        11


Q ss_pred             hhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCC
Q 029029           78 MYY--RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK  155 (200)
Q Consensus        78 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (200)
                      .++  ...+.++++++....-.+..+    ..+......+.|+++++||.|..+..... .....+.+..+..+.+.++.
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~~  313 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGL----ARLDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSKR  313 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCGG
T ss_pred             HHhcccccCceEEEEcCCceEEECCE----EEEEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCch
Confidence            122  568899999988432100010    11112223578999999999987544332 23445556667776666665


Q ss_pred             CCCCH
Q 029029          156 TATNV  160 (200)
Q Consensus       156 ~~~~i  160 (200)
                      +..++
T Consensus       314 ~~~~~  318 (369)
T 3ec1_A          314 YAAEF  318 (369)
T ss_dssp             GTTTC
T ss_pred             hhhhc
Confidence            54443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.05  E-value=6.4e-12  Score=98.62  Aligned_cols=137  Identities=12%  Similarity=0.181  Sum_probs=79.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcc-----cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccch----h---
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQF-----IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA----P---   77 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~---   77 (200)
                      ..+|+++|.+|+|||||+|+|++...     ....+...+++.......+...   +.++||||........    .   
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            46899999999999999999997531     1123444555555555554432   8999999964322111    1   


Q ss_pred             -hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029           78 -MY--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus        78 -~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                       .+  ....+..+++++.........+    ..+......+.|+++++||.|..+.... ......+.+..+..+.+.++
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred             HHhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence             11  2567888888887421000010    1111122357899999999998754332 23344455556665555554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.00  E-value=7.9e-10  Score=83.17  Aligned_cols=137  Identities=16%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcc---------cCcceeeEEEEEEEECCeEEEEEEEeCCCccccc---cch-
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ---------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---SLA-   76 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~~~-   76 (200)
                      .++++|+|++|+|||||++.|++...+..-         ................+-...++++|++|.....   ..+ 
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            578999999999999999999974332110         0000000001111111122368999999843210   000 


Q ss_pred             --h----------------------hhhcCCcEEEEEEeCC-CH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC
Q 029029           77 --P----------------------MYYRGAAAAIIVYDIT-NQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        77 --~----------------------~~~~~~d~~i~v~d~~-~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                        .                      ..+..+++.++++|.. .+ ...+  ...+..+..   . .++++|++|.|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---V-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---c-CcEEEEEeccccCCH
Confidence              0                      0123468888999864 22 1111  233333332   2 789999999997653


Q ss_pred             CCCC--HHHHHHHHHHcCCcEEEe
Q 029029          131 RKVT--AEEAQAYAQENGLFFMET  152 (200)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~~  152 (200)
                      .+..  ...++.....+++.+|+.
T Consensus       156 ~e~~~~k~~i~~~l~~~~i~i~~~  179 (270)
T 3sop_A          156 EEKSEFKQRVRKELEVNGIEFYPQ  179 (270)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHcCccccCC
Confidence            3221  123344455677776643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.98  E-value=2.9e-10  Score=92.24  Aligned_cols=152  Identities=12%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh------Cccc---C-cccC-----------cceeeEEEEEEE-------------
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK------GQFI---E-FQES-----------TIGAAFFSQTLA-------------   53 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~------~~~~---~-~~~~-----------~~~~~~~~~~~~-------------   53 (200)
                      .+...|+|+|.+||||||++++|..      ...-   . .+.+           ..+..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999983      2110   0 0000           001221111000             


Q ss_pred             ECCeEEEEEEEeCCCccccc-cchhh---h--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEeCcC
Q 029029           54 VNDATVKFEIWDTAGQERYH-SLAPM---Y--YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKAD  126 (200)
Q Consensus        54 ~~~~~~~~~i~D~~G~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-ivv~nK~D  126 (200)
                      .....+.+.|+||||..... ..+..   .  +..+|.+++|+|........   .....+...    .|+ .+|+||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCc
Confidence            00034579999999975322 11111   1  22789999999998643211   112222221    454 78999999


Q ss_pred             ccCCCCCCHHHHHHHHHHcCCcE------------------EEecCCCCCC-HHHHHHHHHHh
Q 029029          127 LLDARKVTAEEAQAYAQENGLFF------------------METSAKTATN-VNDIFYEIAKR  170 (200)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~  170 (200)
                      .....  .  .........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            75321  1  1222334445443                  2368889999 99999998876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.97  E-value=1.8e-09  Score=85.74  Aligned_cols=141  Identities=16%  Similarity=0.183  Sum_probs=69.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCccc--CcceeeEEEEE--EEECCeEEEEEEEeCCCccccc------------
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE--STIGAAFFSQT--LAVNDATVKFEIWDTAGQERYH------------   73 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~~~------------   73 (200)
                      .++++|+|++|+|||||++.|.+..+.....  ...+.......  ....+....+.++|++|.....            
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            3569999999999999999999754321111  01122221111  2222233478999999854210            


Q ss_pred             --cch----hhh---------hcCC--cE-EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH
Q 029029           74 --SLA----PMY---------YRGA--AA-AIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA  135 (200)
Q Consensus        74 --~~~----~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~  135 (200)
                        ..+    ..+         ...+  |+ ++++.|...+-+  ...  +..+.... .+.|+|+|+||+|.....++..
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~D--ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLD--LVTMKKLD-SKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHH--HHHHHHTC-SCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHH--HHHHHHHh-hCCCEEEEEcchhccchHHHHH
Confidence              001    011         1122  33 455556554322  211  22223332 5789999999999765332211


Q ss_pred             --HHHHHHHHHcCCcEEEecCC
Q 029029          136 --EEAQAYAQENGLFFMETSAK  155 (200)
Q Consensus       136 --~~~~~~~~~~~~~~~~~Sa~  155 (200)
                        ..++......+++++.+|..
T Consensus       197 l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          197 FKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHHcCCcEEecCCC
Confidence              11222233456777777743

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.95  E-value=2.9e-08  Score=78.74  Aligned_cols=159  Identities=14%  Similarity=0.118  Sum_probs=85.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcc-eeeE--EEEEEEECCeEEEEEEEeCCCccccccchhhh-----hc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTI-GAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-----YR   81 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~   81 (200)
                      ...++|+|++|||||||+|.|.+...+..-.-.. +...  ....... .....+.+||++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            4479999999999999999999633222111111 1110  0111111 111258999999864322111222     23


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc-------CCCCCCHH----HHHHHHH----HcC
Q 029029           82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL-------DARKVTAE----EAQAYAQ----ENG  146 (200)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~-------~~~~~~~~----~~~~~~~----~~~  146 (200)
                      ..+..++ ++....+.  .-......+..   .+.|+++|.||.|+.       ........    .++.+..    ..+
T Consensus       148 ~~~~~~~-lS~G~~~k--qrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFKK--NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCCH--HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCccH--HHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455554 77653111  11122222333   357999999999974       11111222    2333321    222


Q ss_pred             ---CcEEEecC--CCCCCHHHHHHHHHHhccccC
Q 029029          147 ---LFFMETSA--KTATNVNDIFYEIAKRLPRVQ  175 (200)
Q Consensus       147 ---~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~~  175 (200)
                         ..++.+|+  .++.|++++.+.+.+.+.+..
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence               35788999  556679999999998886654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.93  E-value=3.7e-09  Score=82.94  Aligned_cols=97  Identities=21%  Similarity=0.246  Sum_probs=73.1

Q ss_pred             CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHH----HHH
Q 029029           68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQA----YAQ  143 (200)
Q Consensus        68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~----~~~  143 (200)
                      ..+.+......+.+.++++++|+|++++.     ..|...+.... .++|+++|+||+|+.... ...+....    +++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45678888888999999999999999863     34545555442 378999999999997533 33333333    356


Q ss_pred             HcCC---cEEEecCCCCCCHHHHHHHHHHhc
Q 029029          144 ENGL---FFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ..+.   .++.+||++|.|++++++++.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6677   799999999999999999997754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.76  E-value=8.8e-09  Score=77.92  Aligned_cols=59  Identities=24%  Similarity=0.299  Sum_probs=36.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcc
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   70 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   70 (200)
                      ...++|+++|.+|+|||||+|+|.+... .......|++.....+....   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            4568999999999999999999996442 23444555554443333322   58999999964

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.76  E-value=1.2e-08  Score=77.26  Aligned_cols=100  Identities=15%  Similarity=0.047  Sum_probs=69.0

Q ss_pred             EEeCCCcc-ccccchhhhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH
Q 029029           63 IWDTAGQE-RYHSLAPMYYRGAAAAIIVYDITNQASFE--RAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQ  139 (200)
Q Consensus        63 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~  139 (200)
                      +-..||+. .........+..+|+++.|+|..+|.+..  .+..++        .++|.++|+||+|+.+...  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            34578875 34455566789999999999999986653  233332        4689999999999965311  22233


Q ss_pred             HHHHHcCCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          140 AYAQENGLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       140 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      .+.+..+++++.+||.++.|++++++.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            444456789999999999999999998887765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.75  E-value=1.4e-08  Score=79.66  Aligned_cols=97  Identities=22%  Similarity=0.248  Sum_probs=71.4

Q ss_pred             CccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHH----HH
Q 029029           68 GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAY----AQ  143 (200)
Q Consensus        68 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~----~~  143 (200)
                      .++.+......++..++++++|+|++++.+     .|...+.... .++|+++|+||+|+.... ...+....+    ++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            467888888888899999999999998753     3333333332 378999999999997542 333333333    45


Q ss_pred             HcCC---cEEEecCCCCCCHHHHHHHHHHhc
Q 029029          144 ENGL---FFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ..+.   .++.+||++|.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5666   689999999999999999987754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.68  E-value=6.4e-09  Score=77.87  Aligned_cols=58  Identities=19%  Similarity=0.186  Sum_probs=36.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY   72 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   72 (200)
                      ++++++|.+|+|||||+|+|.+.... ...+..|++.....+...   ..+++|||||....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLE---NGVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence            69999999999999999999965442 334455554433333332   25899999997543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.48  E-value=5.2e-07  Score=71.99  Aligned_cols=140  Identities=16%  Similarity=0.098  Sum_probs=77.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccC----------cc-----------cCcceeeEEEEEEEEC------------
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQ-----------ESTIGAAFFSQTLAVN------------   55 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~------------   55 (200)
                      ++..|+++|++|+||||++..|.......          .+           ....+...+......+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999887311000          00           0011221111000000            


Q ss_pred             -CeEEEEEEEeCCCcccccc-chh-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           56 -DATVKFEIWDTAGQERYHS-LAP-----MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        56 -~~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                       ..++.+.++||+|...... ...     .....+|.+++|+|........   .....+...   -.+..+|+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCc
Confidence             0126799999999543211 111     1133689999999987643221   222333332   23467899999964


Q ss_pred             CCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029          129 DARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      .    ....+.......+.|+..++.  |+++
T Consensus       253 ~----~gG~~ls~~~~~g~PI~fig~--Ge~v  278 (443)
T 3dm5_A          253 A----KGGGALSAVAATGAPIKFIGT--GEKI  278 (443)
T ss_dssp             S----SHHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred             c----cccHHHHHHHHHCCCEEEEEc--CCCh
Confidence            3    233455556677888776664  4444

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.40  E-value=1.3e-07  Score=75.60  Aligned_cols=133  Identities=16%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcc-----c---C-c-cc-----------CcceeeEEEEE--------E----EEC
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQF-----I---E-F-QE-----------STIGAAFFSQT--------L----AVN   55 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~-----~---~-~-~~-----------~~~~~~~~~~~--------~----~~~   55 (200)
                      ....|+++|++|+||||++..|.....     .   . . +.           ...+.......        +    ...
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~  177 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK  177 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence            346799999999999999999875210     0   0 0 00           00011111000        0    000


Q ss_pred             CeEEEEEEEeCCCcccccc-chh---h--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC-e-EEEEEeCcCc
Q 029029           56 DATVKFEIWDTAGQERYHS-LAP---M--YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNM-V-MALAGNKADL  127 (200)
Q Consensus        56 ~~~~~~~i~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~-~ivv~nK~D~  127 (200)
                      ...+.+.++||||...... ...   .  .+..+|.+++|+|......   .......+.    ... | ..+|+||.|.
T Consensus       178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSS
T ss_pred             hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCC
Confidence            1345789999999653211 111   1  1236899999999876431   111222222    223 4 7889999996


Q ss_pred             cCCCCCCHHHHHHHHHHcCCcEEEe
Q 029029          128 LDARKVTAEEAQAYAQENGLFFMET  152 (200)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
                      ...    ...+.......+.++..+
T Consensus       251 ~~~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          251 SAK----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             CST----THHHHHHHHHSSCCEEEE
T ss_pred             ccc----hHHHHHHHHHHCCCEEEe
Confidence            421    122344566667765544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.38  E-value=1.3e-07  Score=70.80  Aligned_cols=94  Identities=14%  Similarity=0.043  Sum_probs=62.3

Q ss_pred             CCCccc-cccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH
Q 029029           66 TAGQER-YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE  144 (200)
Q Consensus        66 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  144 (200)
                      .||+.. ........+.++|+++.|+|+.+|.+.....  +. +.     ++|.++|+||+|+.+...  .+....+.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            466542 2345556789999999999999886543210  11 11     689999999999975321  2223344455


Q ss_pred             cCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029          145 NGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      .+.++ .+||.++.|+++++..+.+.
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            67888 99999999999998877654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.31  E-value=5.5e-07  Score=74.40  Aligned_cols=65  Identities=15%  Similarity=-0.005  Sum_probs=39.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCc-ceeeEEEEEE--EE-CCeEEEEEEEeCCCccc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-IGAAFFSQTL--AV-NDATVKFEIWDTAGQER   71 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~   71 (200)
                      ..+.++|+|+|.+|+|||||+|+|++....-....+ .+.+...+..  .. ...+..+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            355688999999999999999999976531111111 1111111111  11 12345799999999653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.29  E-value=6.4e-07  Score=71.40  Aligned_cols=136  Identities=15%  Similarity=0.103  Sum_probs=75.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccC----------cc-----------cCcceeeEEEEEE-------------EE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE----------FQ-----------ESTIGAAFFSQTL-------------AV   54 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~----------~~-----------~~~~~~~~~~~~~-------------~~   54 (200)
                      +..-|+++|++|+||||++..|.......          .+           ....+........             ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            46778999999999999999887311000          00           0011111111000             00


Q ss_pred             CCeEEEEEEEeCCCccc--ccc-chhh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           55 NDATVKFEIWDTAGQER--YHS-LAPM-----YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        55 ~~~~~~~~i~D~~G~~~--~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                      ....+.+.++||||...  ... ....     .....+.+++|+|........   .....+...   -.+..+|+||.|
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD  249 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMD  249 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEeccc
Confidence            11245688999999543  111 1111     122568999999997643221   222333332   134678999999


Q ss_pred             ccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029          127 LLDARKVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                      ...    ....+.......+.|+..++.
T Consensus       250 ~~a----~~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          250 GTA----KGGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             GCS----CHHHHHHHHHHHTCEEEEEEC
T ss_pred             ccc----cchHHHHHHHHHCCCEEEEEC
Confidence            642    344456666678898777765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.22  E-value=5e-07  Score=68.93  Aligned_cols=89  Identities=15%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC--CHHHHHHHHHHcCCcE
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV--TAEEAQAYAQENGLFF  149 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  149 (200)
                      ..+....+.++|.+++|+|..+|.. ...+.+++....   ..++|.++|+||+|+.+....  ..+...+.....+.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3445557899999999999997654 333344443332   247889999999999764320  1233444445568899


Q ss_pred             EEecCCCCCCHHHHH
Q 029029          150 METSAKTATNVNDIF  164 (200)
Q Consensus       150 ~~~Sa~~~~~i~~~~  164 (200)
                      +.+||.++.|+++++
T Consensus       154 ~~~sa~~~~g~~~L~  168 (307)
T 1t9h_A          154 YLTSSKDQDSLADII  168 (307)
T ss_dssp             EECCHHHHTTCTTTG
T ss_pred             EEEecCCCCCHHHHH
Confidence            999999888877644

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.18  E-value=3.6e-06  Score=70.18  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      .|+|+|++|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999999653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.15  E-value=6.5e-06  Score=62.62  Aligned_cols=91  Identities=15%  Similarity=0.094  Sum_probs=54.7

Q ss_pred             EEEEEEEeCCCccc--ccc-chh-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCcc
Q 029029           58 TVKFEIWDTAGQER--YHS-LAP-----MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLL  128 (200)
Q Consensus        58 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~  128 (200)
                      .+.+.++||||...  ... ...     .....+|.+++|+|.....   ......+.+..    ..+ ..+|+||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            45699999999765  211 111     1244789999999986432   11122233322    234 67889999964


Q ss_pred             CCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029          129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      .    ....+.......+.|+..++  .|.+++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKID  279 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence            2    23445666777888877765  455544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.08  E-value=2.3e-07  Score=75.11  Aligned_cols=102  Identities=15%  Similarity=0.115  Sum_probs=57.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc--cccch--------h
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YHSLA--------P   77 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~   77 (200)
                      ..+..|+++|.+||||||+.++|....... ..++.+...........+......+||..|.+.  .+..+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999987432211 111111000000000011112346788888632  22222        4


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 029029           78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ  111 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  111 (200)
                      .++...++.++|+|.++. .......|+..+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            456667888999999986 455556676666554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.01  E-value=1.2e-05  Score=61.90  Aligned_cols=141  Identities=11%  Similarity=0.063  Sum_probs=75.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCccc---------------------CcceeeEEEEEEEEC-----------
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE---------------------STIGAAFFSQTLAVN-----------   55 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-----------   55 (200)
                      .+.--++++|++||||||+++.|.+...+....                     ...++.+........           
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            345678999999999999999987522110000                     001111110000000           


Q ss_pred             --CeEEEEEEEeCCCccccccc-hhh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCc
Q 029029           56 --DATVKFEIWDTAGQERYHSL-APM-----YYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL  127 (200)
Q Consensus        56 --~~~~~~~i~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~  127 (200)
                        .....+.++|++|....... ...     ..-..|-.++++|.....   .+......+....   ....+++||.|.
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~  280 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDA  280 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGG
T ss_pred             HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCC
Confidence              01234667999996432211 111     122478889999976542   2333334444321   124678999995


Q ss_pred             cCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029          128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      ..    ....+.......+.|+..++  +|.++
T Consensus       281 ~a----~~G~~l~~~~~~~~pi~~i~--~Ge~v  307 (328)
T 3e70_C          281 DA----RGGAALSISYVIDAPILFVG--VGQGY  307 (328)
T ss_dssp             CS----CCHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred             cc----chhHHHHHHHHHCCCEEEEe--CCCCc
Confidence            32    22335566677788877666  44444

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.00  E-value=2.4e-05  Score=60.85  Aligned_cols=85  Identities=15%  Similarity=0.145  Sum_probs=55.8

Q ss_pred             hhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC-CHHHHHHHHHHcCCcEEEecCCC
Q 029029           79 YYRGAAAAIIVYDITNQAS-FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV-TAEEAQAYAQENGLFFMETSAKT  156 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~  156 (200)
                      ...++|.+++|... .|.. ...+.+++......   ++|.++|+||+|+.+.... ..+.........+++++.+||.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46889999988654 4543 33344554443333   6788999999999764320 01223333445788999999999


Q ss_pred             CCCHHHHHHHH
Q 029029          157 ATNVNDIFYEI  167 (200)
Q Consensus       157 ~~~i~~~~~~l  167 (200)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999876543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.80  E-value=3e-05  Score=62.06  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=22.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhC
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ..+-.-|.|+|++++|||||+|.|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            345567899999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.74  E-value=2e-05  Score=55.37  Aligned_cols=23  Identities=35%  Similarity=0.718  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .+++++|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998854

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.62  E-value=3.4e-05  Score=54.16  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|||||||++.|.+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999985

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.61  E-value=3.5e-05  Score=54.98  Aligned_cols=22  Identities=41%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999985

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.56  E-value=0.0001  Score=52.51  Aligned_cols=85  Identities=12%  Similarity=0.023  Sum_probs=56.1

Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCcCccCCCCCCHH
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG--NPNMVMALAGNKADLLDARKVTAE  136 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~ivv~nK~D~~~~~~~~~~  136 (200)
                      +.+.++|+|+..  .......+..+|.+|++...+...  ..+...++.+....  .++.++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            678999999865  334455667799999999887653  55666666665543  345677999999984321   223


Q ss_pred             HHHHHHHHcCCcEE
Q 029029          137 EAQAYAQENGLFFM  150 (200)
Q Consensus       137 ~~~~~~~~~~~~~~  150 (200)
                      +..+..+..+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            45555555665544

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.51  E-value=6.3e-05  Score=53.62  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...-.|+|+|++|||||||++.|.+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.50  E-value=6e-05  Score=53.71  Aligned_cols=22  Identities=41%  Similarity=0.587  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999853

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.50  E-value=5.9e-05  Score=54.10  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++|+|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999853

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.48  E-value=7.3e-05  Score=52.66  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .-.|+|+|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            446899999999999999999853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.47  E-value=7e-05  Score=54.36  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      --++|+|++|||||||++.|.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            35789999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.46  E-value=1.4e-05  Score=56.51  Aligned_cols=21  Identities=33%  Similarity=0.632  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      |+|+||+|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999853

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.46  E-value=7e-05  Score=54.25  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++|+|++|||||||++.|.+
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999986

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.46  E-value=3.9e-05  Score=58.52  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -.++|+|++|+|||||+|.|.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            47899999999999999999853

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.45  E-value=7.8e-05  Score=53.45  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=21.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+...|+|+|++|||||||++.|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999998875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.43  E-value=6.1e-05  Score=52.41  Aligned_cols=20  Identities=35%  Similarity=0.665  Sum_probs=17.6

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.40  E-value=9.7e-05  Score=52.63  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhC
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ..--|+|+|++|||||||++.|...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3446899999999999999999853

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.40  E-value=8e-05  Score=54.64  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            479999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.39  E-value=9.5e-05  Score=53.04  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....|+|+|++|||||||++.|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.39  E-value=0.00011  Score=50.56  Aligned_cols=23  Identities=39%  Similarity=0.661  Sum_probs=20.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998644

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.37  E-value=7.4e-05  Score=59.73  Aligned_cols=81  Identities=12%  Similarity=0.033  Sum_probs=44.4

Q ss_pred             EEEEEEEeCCCcccccc-chh-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCC
Q 029029           58 TVKFEIWDTAGQERYHS-LAP-----MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDA  130 (200)
Q Consensus        58 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~  130 (200)
                      .+.+.++||||...... ...     ..+..++.+++|+|.......   ......+...    .+ .-+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCcc
Confidence            45799999999643321 111     123478999999998753221   1222233222    22 3468999996432


Q ss_pred             CCCCHHHHHHHHHHcCCcE
Q 029029          131 RKVTAEEAQAYAQENGLFF  149 (200)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~  149 (200)
                        .  ..+.......+.|+
T Consensus       256 --~--g~~l~i~~~~~~Pi  270 (433)
T 2xxa_A          256 --G--GAALSIRHITGKPI  270 (433)
T ss_dssp             --C--THHHHHHHHHCCCE
T ss_pred             --H--HHHHHHHHHHCCCe
Confidence              1  23344555556653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.35  E-value=0.00012  Score=52.57  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .--|+|+|++|||||||++.|...
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            345899999999999999999854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.33  E-value=0.00013  Score=53.75  Aligned_cols=21  Identities=43%  Similarity=0.517  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        26 ~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999985

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.33  E-value=9.8e-05  Score=53.76  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.32  E-value=0.0002  Score=49.72  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|+|++||||||+++.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.30  E-value=0.00015  Score=51.33  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998853

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.29  E-value=0.00013  Score=52.72  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.29  E-value=0.00013  Score=54.84  Aligned_cols=21  Identities=38%  Similarity=0.558  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999985

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.28  E-value=0.0033  Score=44.97  Aligned_cols=86  Identities=15%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             EEEEEEEeCCCc-cccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029           58 TVKFEIWDTAGQ-ERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE  136 (200)
Q Consensus        58 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (200)
                      .+.+.++|+|+. ..  ......+..+|.+|++...+. .+...+...++.+....  +.++.+|+|+.|....  ....
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence            356899999886 32  233456778999999988754 45566666666666632  4568899999985320  1234


Q ss_pred             HHHHHHHHcCCcEE
Q 029029          137 EAQAYAQENGLFFM  150 (200)
Q Consensus       137 ~~~~~~~~~~~~~~  150 (200)
                      +..+..+..+.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            45555555665544

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.28  E-value=0.00013  Score=53.57  Aligned_cols=21  Identities=38%  Similarity=0.668  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999984

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.28  E-value=0.00013  Score=54.38  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999885

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.28  E-value=0.00016  Score=50.94  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999974

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.28  E-value=0.00016  Score=51.54  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=21.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      ...|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468999999999999999998543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.27  E-value=0.00017  Score=49.84  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..|+|+|++||||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.26  E-value=0.00016  Score=53.81  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++|+|++|||||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999999885

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.26  E-value=0.00014  Score=54.04  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999985

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.26  E-value=0.00017  Score=51.54  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..-|+|+|++|||||||++.|..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999974

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.26  E-value=0.00014  Score=54.38  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999985

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.25  E-value=0.00016  Score=52.87  Aligned_cols=21  Identities=38%  Similarity=0.645  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999985

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.25  E-value=0.00015  Score=54.04  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHc
Confidence            478999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.24  E-value=0.00017  Score=53.16  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999885

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.24  E-value=0.00018  Score=55.99  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      .++|+|++|+|||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            68999999999999999999543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.24  E-value=0.00016  Score=53.23  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999885

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.23  E-value=0.0002  Score=52.66  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999988

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.23  E-value=0.00018  Score=53.22  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999853

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.23  E-value=0.00017  Score=53.27  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.22  E-value=0.00017  Score=53.63  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999985

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.22  E-value=0.0002  Score=54.56  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =.++|+|++|||||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3689999999999999999885

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.22  E-value=0.0002  Score=49.32  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRF   30 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l   30 (200)
                      .-|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.22  E-value=0.00019  Score=53.62  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999853

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.22  E-value=0.00017  Score=53.31  Aligned_cols=21  Identities=48%  Similarity=0.664  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.20  E-value=0.00025  Score=49.26  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999974

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.20  E-value=0.00014  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++++|++|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.19  E-value=0.0002  Score=53.33  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999985

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.18  E-value=0.00021  Score=49.25  Aligned_cols=21  Identities=24%  Similarity=0.252  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.18  E-value=0.00021  Score=53.77  Aligned_cols=21  Identities=38%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999885

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.17  E-value=0.0002  Score=53.70  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999885

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.16  E-value=0.00021  Score=53.03  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999885

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.16  E-value=0.00024  Score=51.03  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ++|+|.|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999885

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.15  E-value=0.00021  Score=53.38  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            578999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.14  E-value=0.00026  Score=50.90  Aligned_cols=22  Identities=45%  Similarity=0.582  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.12  E-value=0.00035  Score=49.64  Aligned_cols=26  Identities=27%  Similarity=0.606  Sum_probs=22.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ....+.|+|+|++||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35567899999999999999998863

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.12  E-value=0.00031  Score=49.02  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-++|+|++|||||||+++|+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3578999999999999999985

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.12  E-value=0.00024  Score=49.56  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++++|++|+|||||++.+.+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.11  E-value=0.00028  Score=53.95  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=22.2

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....-|+|+|++|||||||++.|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            34566799999999999999999875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.11  E-value=0.00029  Score=48.97  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-|+++|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.11  E-value=0.00036  Score=48.94  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=21.4

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhC
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      +...|+|+|++||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999988643

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.10  E-value=0.00031  Score=49.98  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ....|+|+|++||||||+++.|.+
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.10  E-value=0.00034  Score=50.58  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.10  E-value=0.00029  Score=52.57  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++++|++|||||||++.+.+-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999853

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.09  E-value=0.00018  Score=52.45  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=14.8

Q ss_pred             eEEEECCCCCCHHHHHHHHH-hC
Q 029029           12 KLVLLGDVGAGKSSLVLRFV-KG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~-~~   33 (200)
                      -++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 54

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.09  E-value=0.00032  Score=49.87  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|+|++||||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.07  E-value=0.00034  Score=49.80  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.00037  Score=49.51  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.06  E-value=0.00031  Score=50.82  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|||||||++.+.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999985

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.06  E-value=0.00036  Score=49.45  Aligned_cols=21  Identities=43%  Similarity=0.756  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|+|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.05  E-value=0.00037  Score=48.83  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.05  E-value=0.00033  Score=53.27  Aligned_cols=21  Identities=38%  Similarity=0.556  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      -.++++|++|+|||||+|.|.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            457999999999999999998

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.05  E-value=0.00035  Score=53.13  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      -.++++|++|||||||++.|.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            357999999999999999998543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.05  E-value=0.00037  Score=48.98  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.05  E-value=0.00041  Score=48.53  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...|+++|++||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999886

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.04  E-value=0.00039  Score=50.19  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +...|+|+|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998863

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.04  E-value=0.00035  Score=54.41  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.03  E-value=0.00016  Score=50.30  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.|.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999884

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.03  E-value=0.00021  Score=54.49  Aligned_cols=21  Identities=38%  Similarity=0.673  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.|.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            689999999999999998874

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.02  E-value=0.00047  Score=50.68  Aligned_cols=24  Identities=29%  Similarity=0.570  Sum_probs=21.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.++|+|.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567999999999999999998863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.02  E-value=0.00038  Score=54.26  Aligned_cols=21  Identities=33%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|||||||++.+.+
T Consensus        56 i~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHhc
Confidence            468999999999999999985

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.02  E-value=0.00052  Score=48.96  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....|+|+|++||||||+++.|..
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.02  E-value=0.00032  Score=54.79  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998853

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.02  E-value=0.00045  Score=48.56  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...|+|+|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999998875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.02  E-value=0.00034  Score=54.46  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.+.+-
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4689999999999999999853

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.01  E-value=0.00037  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...|+|+|++||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999886

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.01  E-value=0.00051  Score=47.87  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ....|+++|++||||||+.+.|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHH
Confidence            34579999999999999999886

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.01  E-value=0.0004  Score=48.73  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998863

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.00  E-value=0.0005  Score=49.12  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            56799999999999999998863

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.00  E-value=0.00051  Score=50.52  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.00  E-value=0.00047  Score=49.47  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988863

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.00  E-value=0.00032  Score=53.06  Aligned_cols=21  Identities=38%  Similarity=0.645  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            579999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.00  E-value=0.00049  Score=49.05  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999874

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.99  E-value=0.00041  Score=53.95  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999853

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.99  E-value=0.00046  Score=48.24  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998863

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.99  E-value=0.00051  Score=48.97  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.99  E-value=0.00063  Score=47.66  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....|+|+|.+||||||+++.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4567799999999999999998863

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.97  E-value=0.00073  Score=47.99  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ....|+|.|++||||||+.+.|.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999998886

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.97  E-value=0.00042  Score=49.80  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998863

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.97  E-value=0.00044  Score=53.85  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            4789999999999999999853

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.97  E-value=0.00045  Score=54.16  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHcC
Confidence            4689999999999999999853

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.96  E-value=0.00046  Score=53.83  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4689999999999999999853

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.96  E-value=0.00064  Score=52.10  Aligned_cols=26  Identities=19%  Similarity=0.222  Sum_probs=21.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...++-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.96  E-value=0.00069  Score=51.24  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+...|+|+|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.94  E-value=0.00056  Score=46.97  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.93  E-value=0.00052  Score=52.22  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .--++++|++||||||+++.|.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.93  E-value=0.0005  Score=53.85  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            4789999999999999999853

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.93  E-value=0.00049  Score=53.94  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++|+|++|||||||++.+.+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999999985

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.93  E-value=0.00051  Score=53.74  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4689999999999999999853

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.92  E-value=0.00054  Score=47.54  Aligned_cols=21  Identities=38%  Similarity=0.687  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988863

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.92  E-value=0.00061  Score=51.42  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ....-|+|.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999999974

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.91  E-value=0.00062  Score=48.28  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.91  E-value=0.00055  Score=51.33  Aligned_cols=20  Identities=30%  Similarity=0.488  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999985

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.91  E-value=0.00071  Score=51.47  Aligned_cols=32  Identities=22%  Similarity=0.498  Sum_probs=21.8

Q ss_pred             CCCCCCCccceeEEEECCCCCCHHHHHHHHHh
Q 029029            1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+.+.+...+.-|+|+|++|||||||...|..
T Consensus         1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            1 MSDISKASLPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             ------CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCccccCCCCcEEEEECCCccCHHHHHHHHHH
Confidence            45555555455689999999999999999873

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.90  E-value=0.00046  Score=53.84  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++|+|++|||||||++.|.+
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999984

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.89  E-value=0.00078  Score=51.29  Aligned_cols=23  Identities=17%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.|+|+|++||||||+++.|.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45789999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.88  E-value=0.00054  Score=49.50  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.88  E-value=0.00057  Score=54.35  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      --++|+|++|||||||++.+++
T Consensus       168 gii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999985

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.87  E-value=0.00039  Score=47.21  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++++|++|+|||||++.+.+
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999885

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.87  E-value=0.0006  Score=49.13  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +.+.|+|+|++||||||+.+.|.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999885

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.87  E-value=0.0015  Score=43.87  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...|++.|++|+|||++.+.+.
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~   48 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFH   48 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGC
T ss_pred             CCcEEEECCCCccHHHHHHHHH
Confidence            4569999999999999988775

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.86  E-value=0.00095  Score=48.24  Aligned_cols=20  Identities=30%  Similarity=0.637  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999888863

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.86  E-value=0.00066  Score=49.16  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998863

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.86  E-value=0.00071  Score=49.30  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=21.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ....+|+|+|.+||||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.86  E-value=0.00062  Score=47.46  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.+|+|++|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.86  E-value=0.00078  Score=51.35  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....|+|+|++|||||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.85  E-value=0.00046  Score=53.18  Aligned_cols=22  Identities=18%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++|+|++|||||||++.|.+
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999885

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.85  E-value=0.00087  Score=47.69  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=21.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....|+|+|++|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.84  E-value=0.0007  Score=49.91  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|+|||||++.+.+
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999985

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.84  E-value=0.00068  Score=47.71  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...|+|+|++||||||+.+.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999886

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.84  E-value=0.00078  Score=46.70  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..++|+|++|||||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999884

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.83  E-value=0.00041  Score=53.82  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            4789999999999999999853

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.83  E-value=0.00068  Score=48.46  Aligned_cols=24  Identities=38%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +...|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998863

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.83  E-value=0.00074  Score=47.81  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhC
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      +...|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4568999999999999999988753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.81  E-value=0.00095  Score=49.32  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999987

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.80  E-value=0.00095  Score=46.75  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.79  E-value=0.00084  Score=49.55  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...+.|+|.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988854

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.79  E-value=0.00067  Score=53.44  Aligned_cols=21  Identities=43%  Similarity=0.814  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            479999999999999999985

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.77  E-value=0.00087  Score=47.04  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.76  E-value=0.00088  Score=49.56  Aligned_cols=21  Identities=14%  Similarity=0.433  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.76  E-value=0.00079  Score=49.75  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ......|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.75  E-value=0.00086  Score=52.23  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .--++++|++||||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            44689999999999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.75  E-value=0.0007  Score=55.25  Aligned_cols=22  Identities=14%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..++|+|++|||||||++.|++
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3599999999999999999984

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.74  E-value=0.001  Score=45.13  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+|+|+.|+|||||+.++..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.00074  Score=54.38  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -.++|+|++|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999999864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.74  E-value=0.0026  Score=50.88  Aligned_cols=65  Identities=20%  Similarity=0.258  Sum_probs=38.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh---C---------------ccc---CcccCcceeeEEEEEEEE---CCeEEEEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK---G---------------QFI---EFQESTIGAAFFSQTLAV---NDATVKFEI   63 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~---~---------------~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~i   63 (200)
                      ++-.=|.|+|+.++|||+|+|.|+.   .               .+.   .....+.|+-.....+.+   ++....+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            3445566999999999999996652   1               110   111122332222222211   566788999


Q ss_pred             EeCCCcccc
Q 029029           64 WDTAGQERY   72 (200)
Q Consensus        64 ~D~~G~~~~   72 (200)
                      +||.|....
T Consensus       145 lDTEG~~d~  153 (457)
T 4ido_A          145 MDTQGTFDS  153 (457)
T ss_dssp             EEECCBTCT
T ss_pred             EeccCCCCc
Confidence            999996543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.72  E-value=0.0009  Score=47.20  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|+|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.72  E-value=0.00059  Score=47.52  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=15.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...|+|.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999886

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.72  E-value=0.00041  Score=53.95  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++++|++|||||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999853

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.71  E-value=0.001  Score=45.86  Aligned_cols=21  Identities=14%  Similarity=0.445  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.70  E-value=0.0011  Score=46.10  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++|.|++|+|||+|++.+..
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.70  E-value=0.0011  Score=49.21  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.70  E-value=0.0012  Score=47.52  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=20.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.70  E-value=0.00098  Score=51.35  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++++|++|+|||||++.+.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999999875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.70  E-value=0.0012  Score=45.93  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|+|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.70  E-value=0.00098  Score=48.50  Aligned_cols=25  Identities=24%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+..-|+|.|+.||||||+++.|.+
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999998874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.69  E-value=0.001  Score=49.75  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|+|||||++.+.+
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHH
Confidence            399999999999999999985

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.69  E-value=0.00034  Score=50.05  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999873

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.68  E-value=0.0011  Score=47.88  Aligned_cols=21  Identities=33%  Similarity=0.664  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|+|||||+..+.+
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999884

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.68  E-value=0.00099  Score=46.49  Aligned_cols=21  Identities=48%  Similarity=0.643  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999888753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.68  E-value=0.001  Score=53.82  Aligned_cols=23  Identities=17%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .--++|+|++|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            44689999999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.66  E-value=0.00069  Score=51.91  Aligned_cols=23  Identities=35%  Similarity=0.535  Sum_probs=20.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      -++|+|+.|||||||++.|++..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46899999999999999999653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.65  E-value=0.0012  Score=48.18  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .++.|+|.|++||||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999999886

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.62  E-value=0.0012  Score=51.26  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      =+++|+|++|+|||||++.+.+.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.59  E-value=0.0016  Score=50.22  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.57  E-value=0.0015  Score=44.81  Aligned_cols=22  Identities=45%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999888753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.56  E-value=0.0014  Score=53.87  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++++|++|||||||++.|.+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.54  E-value=0.0015  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.|+|+|++||||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.53  E-value=0.0018  Score=48.64  Aligned_cols=24  Identities=38%  Similarity=0.306  Sum_probs=21.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHH
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .....|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999886

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.53  E-value=0.0018  Score=47.73  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +..++++|++|+|||+|++.+.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            44699999999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.52  E-value=0.0014  Score=49.52  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.52  E-value=0.0015  Score=52.79  Aligned_cols=21  Identities=43%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999886

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.48  E-value=0.002  Score=46.14  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|+|++||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998863

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.48  E-value=0.0018  Score=47.12  Aligned_cols=21  Identities=14%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|+|||||+..+.+
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            579999999999999999986

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.48  E-value=0.0018  Score=50.47  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHH
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRF   30 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l   30 (200)
                      .+..||+++|.+|||||||++.+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45799999999999999998886

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.47  E-value=0.0014  Score=53.80  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|||||||++.|.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5799999999999999999853

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.47  E-value=0.0018  Score=46.31  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|+|||||+..+.+
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999986

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.45  E-value=0.0026  Score=46.30  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...-|+|.|++||||||+++.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.43  E-value=0.0015  Score=45.27  Aligned_cols=23  Identities=35%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++|.|++|+|||+|++.+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.43  E-value=0.0017  Score=53.89  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999984

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.42  E-value=0.0015  Score=54.23  Aligned_cols=21  Identities=29%  Similarity=0.582  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            689999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0018  Score=53.96  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.|.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5799999999999999999863

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.41  E-value=0.0022  Score=46.39  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++|.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.41  E-value=0.0018  Score=51.80  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      +++|+|++|+|||||++.+.+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.41  E-value=0.0019  Score=50.43  Aligned_cols=20  Identities=45%  Similarity=0.424  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|+|++|||||||++.+..
T Consensus        26 ~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56999999999999999863

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.40  E-value=0.0022  Score=45.44  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.39  E-value=0.002  Score=50.50  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++++|++|+|||||++.|.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999999874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.39  E-value=0.0024  Score=45.22  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....|+++|..||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4578899999999999999988863

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.37  E-value=0.0023  Score=48.36  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.30  E-value=0.0025  Score=52.42  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|||||||++.|.+.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.30  E-value=0.0022  Score=53.51  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.|.+.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5799999999999999999853

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.28  E-value=0.0029  Score=42.49  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|++.|++|+|||++.+.+..
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.28  E-value=0.0024  Score=53.26  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|+|||||++.|.+.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.27  E-value=0.0033  Score=47.47  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=21.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+.-+++.|++|+|||+|++.+..
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456788889999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.25  E-value=0.0022  Score=52.63  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|||||||++.|.+-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999853

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.24  E-value=0.018  Score=44.06  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|.|++|+|||+|++.+..
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34699999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.21  E-value=0.0017  Score=54.04  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =.++++|++|||||||++.+.+
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            3689999999999999999874

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.20  E-value=0.0032  Score=44.90  Aligned_cols=20  Identities=35%  Similarity=0.559  Sum_probs=17.4

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      -.+|+|+.|+||||++.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            35899999999999999874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.19  E-value=0.0033  Score=48.14  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.19  E-value=0.003  Score=47.55  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...+++.|++|+|||+|++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            56799999999999999999874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.19  E-value=0.0014  Score=54.27  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =.++++|++|||||||++.+.+
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            3689999999999999998874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.18  E-value=0.0032  Score=45.31  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.18  E-value=0.0028  Score=48.01  Aligned_cols=134  Identities=16%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCccc-Cc----------ccCc-----------ceeeEEEEE----E--EE-CCeEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFI-EF----------QEST-----------IGAAFFSQT----L--AV-NDATVK   60 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~-~~----------~~~~-----------~~~~~~~~~----~--~~-~~~~~~   60 (200)
                      .-.|+++|++|+||||++..|.+.... .-          ..+.           .+.......    .  .+ .-....
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d  184 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD  184 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence            457899999999999999988642110 00          0000           000000000    0  00 002356


Q ss_pred             EEEEeCCCcccccc-ch---hhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029           61 FEIWDTAGQERYHS-LA---PMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT  134 (200)
Q Consensus        61 ~~i~D~~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~  134 (200)
                      +.++||+|...... ..   ...+.  ..+..++|+|.+..  ...+..+...+..   -+ ..-+|+||.|...    .
T Consensus       185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~----~  254 (296)
T 2px0_A          185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT----S  254 (296)
T ss_dssp             EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS----C
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc----c
Confidence            99999999654321 11   11222  36778888887653  2233333222221   11 2345679999643    2


Q ss_pred             HHHHHHHHHHcCCcEEEec
Q 029029          135 AEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~S  153 (200)
                      ...+.......++|+..+.
T Consensus       255 ~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             CHHHHHHHHTCSCCCSEEC
T ss_pred             hhHHHHHHHHHCcCEEEEE
Confidence            2345666677787754443

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.17  E-value=0.0039  Score=45.89  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...+++.|++|+|||+|++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.17  E-value=0.0028  Score=47.38  Aligned_cols=21  Identities=38%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.16  E-value=0.0027  Score=45.39  Aligned_cols=21  Identities=33%  Similarity=0.543  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+++.|++|+|||+++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999888863

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.15  E-value=0.0037  Score=46.71  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...++|.|++|+|||+|++.+..
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45699999999999999999874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.15  E-value=0.004  Score=45.34  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....|+|+|++||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.0031  Score=52.51  Aligned_cols=22  Identities=32%  Similarity=0.649  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHhCc
Q 029029           13 LVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      ++|+|++|||||||++.|.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.14  E-value=0.0035  Score=44.54  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|.|++|+|||+|++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.14  E-value=0.0033  Score=47.62  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|++.|++|+|||+|++.+..
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHH
Confidence            34699999999999999999874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.13  E-value=0.0037  Score=45.51  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=20.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...++++|+|++||||||+...|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            4578999999999999999988753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.11  E-value=0.0036  Score=47.63  Aligned_cols=86  Identities=20%  Similarity=0.118  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCcccccc-ch------hhh-----hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           59 VKFEIWDTAGQERYHS-LA------PMY-----YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~-~~------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                      +.+.++||||...... ..      ...     -..++.+++|+|....  .+.+.. ...+...  .+ ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VN-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SC-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CC-CCEEEEeCCC
Confidence            4589999999532111 00      001     1247888999998743  222221 2233322  12 2446789999


Q ss_pred             ccCCCCCCHHHHHHHHHHcCCcEEEecC
Q 029029          127 LLDARKVTAEEAQAYAQENGLFFMETSA  154 (200)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (200)
                      ...    ....+.......+.|+..+..
T Consensus       261 ~~~----~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTA----KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred             Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence            532    223366777788888766643

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.11  E-value=0.0048  Score=46.62  Aligned_cols=25  Identities=20%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....++|.|++|+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999987653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.11  E-value=0.002  Score=53.53  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999998874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.09  E-value=0.0053  Score=45.65  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=21.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .....+++.|++|+|||+|++.+..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4456899999999999999999874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.03  E-value=0.0039  Score=47.61  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++|.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999999874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.0047  Score=49.26  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+..|++.||||+|||+|++++.+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.03  E-value=0.00052  Score=49.98  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ++|+|++|||||||++.+.+-
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            468999999999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.02  E-value=0.0043  Score=54.27  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=21.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQF   35 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~   35 (200)
                      .++|+|++|||||||++.|.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            579999999999999999997643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.02  E-value=0.004  Score=44.11  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.01  E-value=0.0059  Score=48.51  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=20.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...-|+++|++||||||+.+.|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            355689999999999999999873

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.98  E-value=0.0035  Score=48.37  Aligned_cols=20  Identities=30%  Similarity=0.619  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.98  E-value=0.004  Score=44.25  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=20.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ...|+|+|++|+|||+|...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999999743

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.97  E-value=0.0025  Score=47.22  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHH
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .+...|+|.|..||||||+++.|.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~   45 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILK   45 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHH
Confidence            445789999999999999998876

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.0053  Score=48.87  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+..|++.||||+|||+|++++.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.95  E-value=0.0041  Score=48.26  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -+.|+|++|+|||||+..+.+.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999853

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.91  E-value=0.0021  Score=48.57  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=17.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +..-|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            455699999999999999988764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.90  E-value=0.0069  Score=46.95  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...+|+++|++|+||||+.+.|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999987654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.0059  Score=48.75  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++-.|++.||||+|||+|++++.+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            456899999999999999999974

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.89  E-value=0.038  Score=42.95  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|+|||||++.+..
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            568999999999999999874

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.89  E-value=0.0047  Score=44.92  Aligned_cols=21  Identities=29%  Similarity=0.503  Sum_probs=18.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877754

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.88  E-value=0.0051  Score=47.45  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+|+|++|+|||||++++..
T Consensus        26 ~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            37999999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.87  E-value=0.0046  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            44789999999999999999874

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.87  E-value=0.0053  Score=44.84  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|.|..||||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.87  E-value=0.0051  Score=47.34  Aligned_cols=21  Identities=29%  Similarity=0.629  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ++|.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.85  E-value=0.007  Score=46.25  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ....+++.|++|+|||+|++.+..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            356799999999999999999874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.85  E-value=0.007  Score=46.33  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +...|++.|++|+|||+|++.+..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            346799999999999999999874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.84  E-value=0.0055  Score=43.89  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|+|.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.83  E-value=0.0055  Score=47.70  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|.|++|+|||||++.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.83  E-value=0.0085  Score=45.25  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.++|.|++|+|||++++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999998874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.79  E-value=0.0059  Score=45.99  Aligned_cols=23  Identities=26%  Similarity=0.645  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.0064  Score=47.96  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++..|++.||||+|||.|++++.+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHH
Confidence            456799999999999999999974

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.77  E-value=0.0073  Score=43.75  Aligned_cols=26  Identities=15%  Similarity=0.116  Sum_probs=21.3

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHH
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +..+..-|+|.|.+||||||+++.|.
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~   42 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLA   42 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34556789999999999999999886

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.75  E-value=0.0029  Score=55.34  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=20.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .++|+|++|||||||++.|.+-
T Consensus       701 ivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999853

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.72  E-value=0.0075  Score=41.85  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      .-|++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            468999999999999999988643

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.71  E-value=0.0067  Score=46.22  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-|+|+|++|||||||...|..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCcCCHHHHHHHHHH
Confidence            3578999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.70  E-value=0.0067  Score=46.69  Aligned_cols=22  Identities=41%  Similarity=0.670  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-|+|+|++|||||||...|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999873

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.65  E-value=0.0043  Score=51.09  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +...|+|+|++|||||||++.|.+
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHH
Confidence            346799999999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.65  E-value=0.0083  Score=43.12  Aligned_cols=23  Identities=30%  Similarity=0.235  Sum_probs=20.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +..-|+|.|++||||||+++.|.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~   27 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLA   27 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHH
Confidence            45679999999999999999886

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.62  E-value=0.0046  Score=47.35  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.+|+|++|+|||||++.+..
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHH
Confidence            468999999999999999873

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.62  E-value=0.0072  Score=48.15  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|+|||||++.+.+
T Consensus        28 ~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           28 FTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.61  E-value=0.0033  Score=57.06  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=0.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +|+|||++|||||||++.|.+
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.60  E-value=0.0033  Score=46.55  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+++.|++|+|||+|++.+..
T Consensus        45 ~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            3489999999999999999875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.59  E-value=0.0077  Score=46.28  Aligned_cols=21  Identities=33%  Similarity=0.673  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+++.|++|+|||++++.+..
T Consensus        60 ~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999874

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.59  E-value=0.0085  Score=45.59  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-54
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-53
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-52
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	8e-50
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-49
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-49
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-47
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-47
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	9e-47
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-46
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-45
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-44
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-43
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-43
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-41
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-41
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-40
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-39
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-38
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-38
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-36
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-36
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-36
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-36
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-35
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-35
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-35
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-34
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-34
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-34
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	4e-34
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-33
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-33
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-31
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-31
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-31
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-31
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-30
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-29
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-29
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	7e-29
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-28
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-27
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-27
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-25
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-25
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-25
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-24
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-24
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	8e-24
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-22
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-20
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-18
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-17
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-15
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-11
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-09
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	2e-08
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-07
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	8e-07
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	1e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	4e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	4e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	4e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	5e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	5e-04
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	8e-04
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	0.001
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.002
d1kk1a3	195	c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su	0.004

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  168 bits (427), Expect = 3e-54
 Identities = 62/160 (38%), Positives = 101/160 (63%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+GD G GK+ ++ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   ++VYDITN+ SF+  + W++ ++   + ++   + GNK D+ D R
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V+ E  +  A + G+ FMETSAK   NV + F+ +A+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  165 bits (418), Expect = 5e-53
 Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGA   I+VYDIT++ +F   K+W + +    N    + L GNK+D ++ R
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METR 122

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (412), Expect = 5e-52
 Identities = 69/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQEST-IGAAFFSQTLAVNDATVKFEIWDTAGQE 70
           K++L+GD G GK+ L++RF  G F+     + +G  F ++ L V+   VK ++WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           R+ S+   YYR A A +++YD+TN+ASF+  + W+ E+      ++ + L GNK D    
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  E+ +  A+E GL FMETSAKT  NV+  F  IAK L R
Sbjct: 128 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (397), Expect = 8e-50
 Identities = 66/160 (41%), Positives = 104/160 (65%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+G+ G GK+ LV RF +G F   Q +TIG  F  +T+ +N   VK +IWDTAGQER
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYR A A I+ YDIT + SF    +W++E++   +  ++  L GNK DL + R
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 126

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V+ + A+ +++   ++++ETSAK + NV  +F ++A RL
Sbjct: 127 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  157 bits (397), Expect = 1e-49
 Identities = 71/170 (41%), Positives = 102/170 (60%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+L+G+ G GKS L+LRF    +     STIG  F  +T+ ++  TVK +IWDTAGQER
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRG+   IIVYD+T+Q SF   K W+QE+       ++  L GNK DL D R
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 181
            V  + A+ +A  N + F+ETSA  +TNV D F  +A+++       N +
Sbjct: 128 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 177

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (392), Expect = 5e-49
 Identities = 73/160 (45%), Positives = 107/160 (66%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            VT EEA+ +A+ENGL F+E SAKT  NV D F E AK++
Sbjct: 126 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 4e-47
 Identities = 121/169 (71%), Positives = 141/169 (83%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNK 124
           DTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           ADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK+LP+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 4e-47
 Identities = 71/161 (44%), Positives = 107/161 (66%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D T++ ++WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + SL P Y R +AAA++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
           +V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP
Sbjct: 122 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 162

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 9e-47
 Identities = 72/163 (44%), Positives = 110/163 (67%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQER
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y  +   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 174
            V  +EA+A+A++N L F+ETSA  +TNV + F  I   + R+
Sbjct: 126 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (374), Expect = 3e-46
 Identities = 58/160 (36%), Positives = 93/160 (58%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + +L P YYRGA   I+VYD+T + +F +   W+ EL+     N ++ +        + R
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 128

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +V   E   +A+++ + F+E SAKT   V   F E+ +++
Sbjct: 129 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  146 bits (369), Expect = 1e-45
 Identities = 59/160 (36%), Positives = 88/160 (55%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQER
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V++E  +  A   G  F E SAK   NV   F  +   +
Sbjct: 127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 2e-44
 Identities = 72/162 (44%), Positives = 105/162 (64%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT + +F     W+++ +   + NMV+ L GNK+DL   R
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
            V  EE +A+A+E+GL FMETSAKTA NV + F   AK + R
Sbjct: 125 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 2e-43
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 11/171 (6%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND----------ATVKF 61
           KL+ LGD G GK++ + R+   +F     +T+G  F  + +  N             V  
Sbjct: 7   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66

Query: 62  EIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MAL 120
           ++WDTAGQER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA        + L
Sbjct: 67  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126

Query: 121 AGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            GNKADL D R+V   +A+  A + G+ + ETSA T  NV      +   +
Sbjct: 127 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (352), Expect = 5e-43
 Identities = 68/160 (42%), Positives = 103/160 (64%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAGQER
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +VT  EA  +AQEN L F+ETSA T  NV + F + A+++
Sbjct: 127 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 1e-41
 Identities = 67/160 (41%), Positives = 105/160 (65%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+VLLG+   GK+SLVLR+ + +F +   +T+GA+F ++ L +    V   IWDTAGQER
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           +H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK DL   R
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            V+ +EA++YA+  G     TSAK    + ++F ++ KR+
Sbjct: 125 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  135 bits (341), Expect = 2e-41
 Identities = 92/164 (56%), Positives = 118/164 (71%), Gaps = 3/164 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVLLG+   GKSS+VLRFV   F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL---L 128
           + SLAPMYYR A AA++VYD+T   SF +A+ WV+EL  Q + ++++AL GNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
             RKV  EE +  A+E GL F ETSAKT  NVND+F  I +++P
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 1e-40
 Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130
           + S+  +Y +     I+VY + NQ SF+  K    ++        + + L GNK DL   
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V++ E +A A+E G  FMETSAK+ T V+++F EI +++
Sbjct: 124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (328), Expect = 2e-39
 Identities = 84/161 (52%), Positives = 114/161 (70%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ LLGD G GKSS++ RFV+  F      TIGA+F ++T+   +   KF IWDTAG ER
Sbjct: 6   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           + +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G P++V+A+AGNK DL D R
Sbjct: 66  FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 125

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
           +V   +A+ YA      F+ETSAK A N+N++F EI++R+P
Sbjct: 126 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 64/165 (38%), Positives = 96/165 (58%), Gaps = 6/165 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ----AQGNPNMVMALAGNKADL 127
           + SL   +YRG+   ++ + + +  SF+    W +E       +   +    + GNK D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 128 LDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRL 171
            + R+V+ EEAQA+ ++NG   + ETSAK ATNV   F E  +R+
Sbjct: 128 SE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 6e-38
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 14/173 (8%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V++GD   GK+ L++ +   +F      T+    ++ T+ +        ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y  L P+ Y      ++ + + + +SFE  K+          P     L G + DL D  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 132 KV------------TAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRL 171
                         T E A+  A++   + ++E SA T   + ++F E     
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-36
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 15/183 (8%)

Query: 1   MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVK 60
           MA  G   +  K V++GD   GK+ L++ +    F E    T+    ++ ++ V      
Sbjct: 1   MAH-GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYL 58

Query: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL 120
             ++DTAGQE Y  L P+ Y      +I + + N ASF+  K+       +  PN+   L
Sbjct: 59  LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 118

Query: 121 AGNKADLLDARK------------VTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEI 167
            G + DL D  K            +  E+ Q  A+E G   ++E SA T   +  +F E 
Sbjct: 119 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178

Query: 168 AKR 170
              
Sbjct: 179 IIA 181

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  123 bits (310), Expect = 1e-36
 Identities = 53/161 (32%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G  G GKS+L L+F+  +F+E  E T   ++  +   ++   V+ +I DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQED 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ EEA+  A +  + ++ETSAKT  NV+ +F+++ + +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 2e-36
 Identities = 54/165 (32%), Positives = 96/165 (58%), Gaps = 2/165 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +LV++G  G GKS+L ++F++  F+   + TI    +++   ++D   + +I DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEE 65

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     ++V+ +T++ SFE   K+ ++ L+ +      M L GNKADL   
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQ 125

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           R+VT EE Q  A++  + +ME SAK   NV+  F+E+ + + + Q
Sbjct: 126 RQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (305), Expect = 7e-36
 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 16/180 (8%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K V++GD   GK+ L++ +    F      T+    +S  + V+   V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQED 65

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           Y  L P+ Y     ++I + + + ASFE  +           PN  + L G K DL D +
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 132 KVTAE------------EAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRLPRVQPAP 178
               +            +  A A+E G + ++E SA T   +  +F E  + +  + P P
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV--LCPPP 183

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++GD   GK+ L  RF  G+F +  E+TIG  F  + + ++   +K ++WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 72  YHSL-APMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLD 129
           +       YYR   A + VYD+TN ASF     W++E  Q     ++   L GNK DL  
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTAT---NVNDIFYEIA 168
           A +V  + AQ +A  + +   ETSAK      +V  IF  +A
Sbjct: 124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 2e-35
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV+LG  G GKS+L ++FV+G F+E  + TI    + + + V+      EI DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDA 130
           + ++  +Y +      +VY IT Q++F   +   +  L+ +   ++ M L GNK DL D 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 131 RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V  E+ Q  A++     F+E+SAK+  NVN+IFY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (299), Expect = 6e-35
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 15/175 (8%)

Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           +  K+V++GD   GK++L+  F K  F E    T+    ++ +  ++   ++  +WDT+G
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSG 59

Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128
              Y ++ P+ Y  + A +I +DI+   + +   K  +    +  PN  M L G K+DL 
Sbjct: 60  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 119

Query: 129 D------------ARKVTAEEAQAYAQENG-LFFMETSAKTATN-VNDIFYEIAK 169
                           V+ ++    A++ G   ++E SA  + N V DIF+    
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 174

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 1e-34
 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 14/174 (8%)

Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           I  KLV++GD   GK+ L++   K QF E    T+    +   + V+   V+  +WDTAG
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAG 59

Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128
            E Y  L P+ Y      ++ + I +  S E   +          PN+ + L GNK DL 
Sbjct: 60  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119

Query: 129 DARKV------------TAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAK 169
           +                  EE +  A   G F +ME SAKT   V ++F    +
Sbjct: 120 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-34
 Identities = 54/163 (33%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q +   + T   +I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDA 130
           Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK DL  A
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           R V + +AQ  A+  G+ ++ETSAKT   V D FY + + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 3e-34
 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++G  G GKS+L ++F++  F+           +++  +V+    + +I DTAGQE 
Sbjct: 8   KLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFE-RAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     ++V+ I ++ SF    K + Q L+ +   +  + L GNKADL   
Sbjct: 67  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 126

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           R+V   EA A+   + + + E SAK   NV++ F ++ + + + Q
Sbjct: 127 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (292), Expect = 4e-34
 Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 1/163 (0%)

Query: 9   INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 68
           +  K+V++G+   GKSS++ R+ KG F +  + TIG  F  + + VND  V+  +WDTAG
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 69  QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128
           QE + ++   YYRGA A ++V+  T++ SF  A    +E       ++  AL  NK DLL
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESF-EAISSWREKVVAEVGDIPTALVQNKIDLL 119

Query: 129 DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           D   +  EEA+  A+   L F  TS K   NV+++F  +A++ 
Sbjct: 120 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-33
 Identities = 26/164 (15%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +++++G   AGK++++ +   G+       T           V    + F +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERA----KKWVQELQAQGNPNMVMALAGNKADL 127
              L   Y++     I V D  ++     A     + + E + +    +V A   +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           ++A ++T +      +    +   T A +   + +    ++ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 4/166 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL 127
           + SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK DL
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
            + +  T         +N + + ETSAK A NV   F  IA+   +
Sbjct: 124 ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 169

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (277), Expect = 1e-31
 Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQE 70
           K+++LGD G GK+SL+ R+V  ++ +  ++TIGA F ++ + V+   V   ++WDTAGQE
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFE----RAKKWVQELQAQGNPNMVMALAGNKAD 126
           R+ SL   +YRGA   ++VYD+TN +SFE       +++              + GNK D
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 127 LLDARKVTAE-EAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRL 171
             +++K+ +E  AQ  A+  G +    TSAK A NV+  F EIA+  
Sbjct: 124 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 4e-31
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++ + G  G GKSSLVLRFVKG F E    T+   +              +I DT G  +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS-ICTLQITDTTGSHQ 62

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ--AQGNPNMVMALAGNKADLLD 129
           + ++  +      A I+VY IT++ S E  K   +++        ++ + L GNK D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           +R+V + EA+A A+     FMETSAK   NV ++F E+     R
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (273), Expect = 4e-31
 Identities = 52/162 (32%), Positives = 93/162 (57%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLV++GD G GKS+L ++F +  F+   + TI  ++   T  +++     ++ DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEE 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDA 130
           + ++   Y R     +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 124

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEIAKRL 171
           RKVT ++ +  A +  + ++ETSAK    NV+  F+++ + +
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  108 bits (271), Expect = 8e-31
 Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           GNK +  ++++LG   AGK++++ +   GQ +     T+G    +         VKF +W
Sbjct: 9   GNKEM--RILMLGLDAAGKTTILYKLKLGQSVTTIP-TVGFNVETV----TYKNVKFNVW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGN 123
           D  GQ++   L   YY G    I V D  ++   + A++ +  +       + ++ +  N
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121

Query: 124 KADLLDARK---VTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           K DL DA K   +  +      ++   +   + A +   + +    +    
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 3e-30
 Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL + G  G GKS+LV+RF+  +FI   + T+ + +  Q   ++D  V  EI DTAGQE 
Sbjct: 4   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 62

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDA 130
                  + R     ++VYDIT++ SFE          + +   N+ + L GNKADL  +
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEIAKRLPR 173
           R+V+ EE +  A E    F E SA T   N+ +IFYE+ + + R
Sbjct: 122 RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 2/168 (1%)

Query: 7   KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
           ++ + K+ +LG    GKSSL ++FV+GQF++  + TI    F++ + VN      ++ DT
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN-TFTKLITVNGQEYHLQLVDT 59

Query: 67  AGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-QELQAQGNPNMVMALAGNKA 125
           AGQ+ Y      Y       I+VY +T+  SFE  K    + L   G   + + L GNK 
Sbjct: 60  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 119

Query: 126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           DL   R ++ EE +A A+     F+E+SAK      D+F  I     +
Sbjct: 120 DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 9/164 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++++G   AGK++++ +F   +              S    +     +F +WD  GQE 
Sbjct: 17  KVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQES 71

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL-AGNKADLLDA 130
             S    YY      I+V D T++      ++ + ++ A  +      L   NK D+ + 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131

Query: 131 ---RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
               +++        +++        A T   +      +  RL
Sbjct: 132 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  104 bits (259), Expect = 7e-29
 Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 9/175 (5%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
              N   ++++LG  GAGK++++ R   G+ +  +  TIG    +    ++   +K  +W
Sbjct: 12  WGSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVET----LSYKNLKLNVW 66

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGN 123
           D  GQ         YY   AA I V D T++     A K +  + Q +   +  + +  N
Sbjct: 67  DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 126

Query: 124 KADLLD---ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
           K D      A +V+ E      ++     + +SA     + +    +   +   Q
Sbjct: 127 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 1e-28
 Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 3/161 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +WDTAGQE+
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
           +  L   YY  A  AII++D+T++ +++    W ++L      N+ + L GNK D+ D +
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRK 123

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
                ++  + ++  L + + SAK+  N    F  +A++L 
Sbjct: 124 --VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLG  G GKS+L   F   +     E+      + +++ V+       ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGP--EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMAL-AGNKADLLDA 130
              L         A +IVY +T++ SFE+A +   +L+     + V  +  GNK+DL+ +
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 120

Query: 131 RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           R+V+ +E +A A      F+ETSA    NV  +F  + +++
Sbjct: 121 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 6e-27
 Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L +LGD  +GKSSL+ RF+ G +   +     +  + + + V+  T    I + AG   
Sbjct: 7   RLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA- 130
                  +         + D  +  +  R    +  L+ +G   + +AL G +  +  + 
Sbjct: 65  AKF--SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 122

Query: 131 -RKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 176
            R V    A+A   +     + ET A    NV+ +F E+A+++  ++ 
Sbjct: 123 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 170

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.0 bits (235), Expect = 2e-25
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 9/171 (5%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
              +   +++LLG   AGK++L+ +            T G    S          K  +W
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSV----QSQGFKLNVW 65

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGN 123
           D  GQ +       Y+      I V D  ++  FE   + + EL  +     + + +  N
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125

Query: 124 KADLLDAR---KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           K DLL A    ++         ++        SA T   V D    + K +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 94.4 bits (233), Expect = 3e-25
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L L+G   +GK++ V     GQF E    T+G         +    V  ++WD  GQ R
Sbjct: 4   ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQPR 59

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDA 130
           + S+   Y RG +A + + D  +Q   E +K  +  L  +     + + + GNK DL  A
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119

Query: 131 ---RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
              +++  +   +  Q+  +     S K   N++     + +  
Sbjct: 120 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 94.0 bits (232), Expect = 4e-25
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 9/164 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L++LG   AGK++++ +F           TI          +     K  IWD  GQ+ 
Sbjct: 4   RLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 58

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130
             S    Y+      I V D  ++   +  ++ +Q L  +       + +  NK DL  A
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118

Query: 131 RKVT---AEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
                          + +       SA T  ++      +   +
Sbjct: 119 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 92.5 bits (228), Expect = 2e-24
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
            + +  ++++LG  GAGK++++ R   G+       T           V    +KF++WD
Sbjct: 3   TREM--RILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWD 55

Query: 66  TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNK 124
             G          YY    A I V D  ++     +K  +  +  +      ++ +  NK
Sbjct: 56  LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 115

Query: 125 ADLLDARKVTA---EEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
            D+  A   +           ++      +TSA   T +++    + + L
Sbjct: 116 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.9 bits (224), Expect = 7e-24
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 16/169 (9%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+ LG   AGK++L+      +      +T+   +   +  +    +KF  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDA 130
              L   Y+      + + D  +   F+ A+  +  L       ++   + GNK D  +A
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 131 RKVT----------AEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
                            +Q    +  +     S        + F  +++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (224), Expect = 8e-24
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 3/167 (1%)

Query: 8   NINAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
           N   ++VL+G+ G GKS+L   F      ++     +G   + +TL V+  +    + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 67  A-GQERYHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNK 124
              +     L     +   A +IVY IT++ASF + ++  +Q  +A+   ++ + L GNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 125 ADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
           +DL+  R+V+  E +A A      F+ETSA    NV ++F  I +++
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.1 bits (217), Expect = 1e-22
 Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 43/199 (21%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           KL+LLG   +GKS+ + +            T G   +      +  +V F + D  GQ  
Sbjct: 4   KLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRS 57

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQAS-----------FERAKKWVQELQAQGNPNMVMAL 120
                   +    + + +  ++                E    +   +      N  + L
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 121 AGNKADLLDARKVTAEEAQAYAQENG--------------------------LFFMETSA 154
             NK DLL+ + + +     + + +G                          ++   T A
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 155 KTATNVNDIFYEIAKRLPR 173
               N+  +F  +   + +
Sbjct: 178 TDTENIRFVFAAVKDTILQ 196

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 81.7 bits (200), Expect = 3e-20
 Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 21/183 (11%)

Query: 5   GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIW 64
           G      KLV LG   AGK++L+      +  +   +         +  +  A + F  +
Sbjct: 8   GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-----LHPTSEELTIAGMTFTTF 62

Query: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGN 123
           D  G  +   +   Y       + + D  +      +K+ +   +  +   N+ + + GN
Sbjct: 63  DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 122

Query: 124 KADLLDARKV---------------TAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA 168
           K D  +A                      +        L     S        + F  +A
Sbjct: 123 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182

Query: 169 KRL 171
           + +
Sbjct: 183 QYI 185

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.9 bits (196), Expect = 2e-19
 Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 45/191 (23%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K++LLG   +GKS+ + +    + I  Q+ T G   +          V F++ D  GQ  
Sbjct: 4   KILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQRS 56

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-----------LQAQGNPNMVMAL 120
                   +    + + +   +         +               +  +   N+ + L
Sbjct: 57  ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 116

Query: 121 AGNKADLLDARKVTAEEAQAYAQENG---------------------------LFFMETS 153
             NK DLL+ +         + +  G                           L+   T+
Sbjct: 117 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTT 176

Query: 154 AKTATNVNDIF 164
           A    N+  +F
Sbjct: 177 AINTENIRLVF 187

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.1 bits (191), Expect = 1e-18
 Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 46/191 (24%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
            KL+LLG   +GKS++V +           +  G              + F+++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGI----VETHFTFKDLHFKMFDVGGQR 53

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASF-----------ERAKKWVQELQAQGNPNMVMA 119
                    + G  A I    +++               E  K +      +   +  + 
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 120 LAGNKADLLDARKVTAEEAQAYAQENG--------------------------LFFMETS 153
           L  NK DL + +   +     Y +  G                          ++   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 154 AKTATNVNDIF 164
           A    NV  +F
Sbjct: 174 ATDTKNVQFVF 184

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.6 bits (185), Expect = 1e-17
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 24/186 (12%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           +L+LLG   +GKS++V +      +     T G              V F ++D  GQ  
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHVV----LTSGIFETK----FQVDKVNFHMFDVGGQRD 59

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV-----------QELQAQGNPNMVMAL 120
                   +    A I V   ++     R                     +    + + L
Sbjct: 60  ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 119

Query: 121 AGNKADLLDARKVTAEEA-----QAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQ 175
             NK DLL  + +  +         +A+                V    Y I     R+ 
Sbjct: 120 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIS 179

Query: 176 PAPNPS 181
            A    
Sbjct: 180 TASGDG 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.1 bits (165), Expect = 5e-15
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
            ++ +G   +GK+ L +R + GQ+ +  +++I  +     +  N       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ----GNPNMVMALAGNKADL 127
              L   +   A A + V D        +                  +  + +A NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 128 LDARKV 133
             A+  
Sbjct: 121 AMAKSA 126

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (138), Expect = 2e-11
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+V+ G   AGKSSL+     G+         G         ++   +   I DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 72  YHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
                       A   I          +       +        +    A     ++  +
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 132 KVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 171
                E    ++ NG   +  SA+T   V+ +   + + +
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 19/174 (10%), Positives = 51/174 (29%), Gaps = 23/174 (13%)

Query: 13  LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72
           +++ G   +GK+SL+             S    +        +       + D  G  + 
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA------ADYDGSGVTLVDFPGHVKL 59

Query: 73  HSLAPMYYRGAAAA-----IIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGN 123
                 Y +  A        +V    +        +++ ++    ++     + + +A N
Sbjct: 60  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119

Query: 124 KADLLDARKVTAEEAQ--------AYAQENGLFFMETSAKTATNVNDIFYEIAK 169
           K++L  AR  +  +             ++  L  +E          +    +  
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 9/165 (5%)

Query: 14  VLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 73
            ++G    GKS+L+   + G  +                 + +   +    DT G  +  
Sbjct: 9   AIVGKPNVGKSTLLNNLL-GVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67

Query: 74  SLAPMYYR------GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
                +         A    +V+ +  +       + V          + + L GNK D 
Sbjct: 68  DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127

Query: 128 LDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
               +   +       E        SA     V ++  ++   +P
Sbjct: 128 AKYPEEAMKAYHELLPEAEPRM--LSALDERQVAELKADLLALMP 170

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.6 bits (114), Expect = 4e-08
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 4/165 (2%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
           A ++++G    GKS+L  + V  +     E   G         V      F++ DT G  
Sbjct: 1   ATVLIVGRPNVGKSTLFNKLV-KKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF 59

Query: 71  RYHSLAPMYYRGAAAAIIVY--DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128
                            ++   D+       +     ++                 A+  
Sbjct: 60  DNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKA 119

Query: 129 DARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLP 172
           +  +    E +      G    +  SA+   N++ +   I K+L 
Sbjct: 120 ENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 164

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 24/176 (13%), Positives = 43/176 (24%), Gaps = 7/176 (3%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
           A + L+G   AGKSSL+         +           +  +       +F + D  G  
Sbjct: 2   ADVGLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 60

Query: 71  RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA 130
              S            I    +         +        +            +  L+  
Sbjct: 61  EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120

Query: 131 RKV------TAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNP 180
            KV        +         GL  +  SA T   +  +   +   +    P   P
Sbjct: 121 NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMP 176

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (105), Expect = 8e-07
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 8/173 (4%)

Query: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
           +K+    + ++G    GKS+L+ + + GQ I                   +   +    D
Sbjct: 1   DKSYCGFIAIVGRPNVGKSTLLNKLL-GQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 59

Query: 66  TAGQERYHSLA------PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA 119
           T G       A                 +V  +     +    + V     +G   +++A
Sbjct: 60  TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILA 119

Query: 120 LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
           +     ++ +   +        +Q N L  +  SA+T  NV+ I   + K LP
Sbjct: 120 VN-KVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 171

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 9/171 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++ L G    GKSS +   +  + +    S  G         +ND     ++      + 
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 72  YHSLAPMYYRGAAAA------IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
             S    + R           +             +   VQ  +      + + +   KA
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 126 DLL---DARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
           D +      K      Q    +     +  S++T    ++ +  I K + R
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR 195

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 20/182 (10%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVK------------------GQFIEFQESTIGAAFFSQTL 52
           A ++  G    GKS+L+ R                                G  F     
Sbjct: 1   ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60

Query: 53  AVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQ 111
                 +K EI         +    +      AA  +     +        ++ Q L+  
Sbjct: 61  KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120

Query: 112 GNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR 170
             P  + +       ++ +     AE+ +    E    F+  SAK   N+  +   I + 
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 180

Query: 171 LP 172
           + 
Sbjct: 181 IR 182

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.4 bits (93), Expect = 4e-05
 Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 14/171 (8%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           K+ ++G    GKS+L    +  +         G         V     K+   DTAG  R
Sbjct: 10  KVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 72  YHSLAPMYYRG-----------AAAAIIVYDITNQASFERAKKWVQELQAQGNP--NMVM 118
              + P                 A  +++     Q    + ++    ++ +G     +  
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 119 ALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
                        + T    +     +    + TSA    N++ +   +  
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 19/167 (11%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG--- 68
           ++V++G    GKS+L+ R +  +         G      +  +    + F I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLL-NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 69  ------QERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAG 122
                 +             A   + V D ++    E  K   +    +    +      
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 123 NKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 169
            K +  + +     +            ++ SA     +  +   I +
Sbjct: 121 EKINEEEIKNKLGTDRH---------MVKISALKGEGLEKLEESIYR 158

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 5e-05
 Identities = 20/167 (11%), Positives = 47/167 (28%), Gaps = 10/167 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
           ++   G   AGKSS +      + +     T G         V D     ++      E 
Sbjct: 18  EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEV 77

Query: 72  YHSL---------APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAG 122
              +           +  R +   ++V         +  ++ ++         +V+    
Sbjct: 78  PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA 137

Query: 123 NKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIA 168
           +K      +       +A    NG       S+     V+ +  ++ 
Sbjct: 138 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 11/172 (6%)

Query: 11  AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 70
           A + L+G    GKS+L+         +  +        +  +   D    F + D  G  
Sbjct: 2   ADVGLVGFPSVGKSTLLSVVS-SAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 71  RYHS----LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126
                   L   + R      ++  + + +  E    +   L      +        +  
Sbjct: 61  EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 120

Query: 127 LLDARKVTAEEAQAYAQE------NGLFFMETSAKTATNVNDIFYEIAKRLP 172
           ++ A K+   EA    +       +       SA T   + ++ +E+A +L 
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 172

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.9 bits (85), Expect = 8e-04
 Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 34/143 (23%)

Query: 9   INAKLVLLGDVGAGKSSLV--LRFVKGQFIEFQES-----------------TIGAAFFS 49
           +N  +  +G V  GK++L   L +V        E                  TI  A   
Sbjct: 4   VN--VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVE 61

Query: 50  QTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA---AIIVYDITNQASFERAKKWVQ 106
                  A   +   D  G   Y         GAA    AI+V          + ++ + 
Sbjct: 62  ----YETAKRHYSHVDCPGHADY---IKNMITGAAQMDGAILVVSAA-DGPMPQTREHIL 113

Query: 107 ELQAQGNPNMVMALAGNKADLLD 129
             +  G P +V+ +  NK D++D
Sbjct: 114 LARQVGVPYIVVFM--NKVDMVD 134

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 9/173 (5%)

Query: 7   KNINAKLVLLGDVGAGKSSLV--LRFVKG-----QFIEFQESTIGAAFFSQTLAVNDATV 59
           KNIN  L + G +  GK++L   L  +       +  E Q+  I          + +  +
Sbjct: 4   KNIN--LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRI 61

Query: 60  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA 119
                          ++       A  ++      +         +          +  +
Sbjct: 62  TLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKS 121

Query: 120 LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 172
                 ++     +     Q+         +  SAKT   V+++   I   L 
Sbjct: 122 DNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 174

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 20/140 (14%), Positives = 35/140 (25%), Gaps = 8/140 (5%)

Query: 12  KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV--KFEIWDTAGQ 69
            + + G+ G+GKSS +         E   +  G    +                WD  G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 70  ERYHSLAPMYYR--GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL 127
              +     Y              I+     +      + +         +     K D 
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVR---TKVD- 173

Query: 128 LDARKVTAEEAQAYAQENGL 147
            D       E Q + +E  L
Sbjct: 174 SDITNEADGEPQTFDKEKVL 193

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 23/193 (11%), Positives = 51/193 (26%), Gaps = 29/193 (15%)

Query: 7   KNINAKLVLLGDVGAGKSSLV--LRFVKG-QFIEFQESTIGAAFFSQTLAVNDATVKFEI 63
             +N  + ++G V  GK++L   L  V      E     I          +         
Sbjct: 4   AEVN--IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRY 61

Query: 64  WDTA------------------GQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV 105
             +                       + +L      GA+       +          +  
Sbjct: 62  STSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR 121

Query: 106 QE---LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF---FMETSAKTATN 159
           +    LQ  G  N+++A    +    +       + + + +         +  SA    N
Sbjct: 122 EHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGAN 181

Query: 160 VNDIFYEIAKRLP 172
           ++ +   I   +P
Sbjct: 182 IDVLVKAIEDFIP 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.82
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.75
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.72
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.68
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.67
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.62
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.57
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.45
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.33
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.33
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.16
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.11
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.95
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.95
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.82
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.41
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.36
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.34
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.31
d1okkd2	207	GTPase domain of the signal recognition particle r	98.28
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.23
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.18
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.15
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.13
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.04
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.91
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.81
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.75
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.75
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.67
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.67
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.67
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.65
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.65
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.6
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.59
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.56
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.55
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.54
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.53
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.53
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.52
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.52
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.46
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.44
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.42
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.4
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.38
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.37
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.36
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.36
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.35
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.34
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.33
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.33
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.33
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.32
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.3
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.3
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.29
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.28
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.26
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.21
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.21
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.2
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.19
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.19
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.18
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.18
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.17
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.17
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.16
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.15
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.15
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.14
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.12
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.08
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.08
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.07
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.06
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.04
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.03
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.01
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.99
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.98
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.98
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.98
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.82
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.74
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.72
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.71
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.68
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.66
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.66
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.58
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.57
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.56
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.55
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.55
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.53
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.49
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.48
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.48
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.45
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.43
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.42
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.41
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.4
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.38
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.31
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.19
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.15
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.14
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.07
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.05
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.04
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.95
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.95
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.89
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.88
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.85
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.85
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.83
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.81
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.8
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.77
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.74
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.66
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.51
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.49
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.47
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.46
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.46
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.4
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.34
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.29
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.24
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.22
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.22
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.21
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.2
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.08
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.03
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.95
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.86
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.84
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.78
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.7
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.62
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.45
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.27
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.23
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.22
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.18
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.07
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.65
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.44
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.43
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.39
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.02
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.77
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.34
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.28
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.86
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.82
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.13
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.54
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.47
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.32
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.28
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.89
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.71
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.7
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.94
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.72
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.31
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.07
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	85.81
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.6
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.59
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.9
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.83
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	83.48
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.21
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	82.55
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	82.11
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.06
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	81.78
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.17

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.7e-37  Score=215.39  Aligned_cols=165  Identities=36%  Similarity=0.626  Sum_probs=154.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      .-+||+|+|++|||||||+++|.++.+.....++.+.+............+.+++|||||++.+...+..+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999888888899989988899999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |||+++++++..+..|+..+........|+++++||.|+.+.+.+..++++.+++.+++++++|||++|.|++++|++|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            99999999999999999888877778899999999999988888899999999999999999999999999999999999


Q ss_pred             Hhccc
Q 029029          169 KRLPR  173 (200)
Q Consensus       169 ~~~~~  173 (200)
                      +.+.+
T Consensus       164 ~~i~e  168 (169)
T d3raba_         164 DVICE  168 (169)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            98765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-37  Score=216.03  Aligned_cols=162  Identities=37%  Similarity=0.631  Sum_probs=152.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.+.........+..+.+.+||++|++.+......+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999888889999889999999999999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      ||.+++++++.+..|+..+.... +++|+++|+||+|+.+.+++..++++.+++.++++|+++||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999987753 57899999999999888889999999999999999999999999999999999998


Q ss_pred             hcc
Q 029029          170 RLP  172 (200)
Q Consensus       170 ~~~  172 (200)
                      ++.
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-37  Score=216.36  Aligned_cols=165  Identities=41%  Similarity=0.750  Sum_probs=148.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+|+|.+|||||||++++.++.+...+.++.+..........++....+.+||++|++.+...+..++.++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            46899999999999999999999999999999999989989899999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |||++++++|+.+..|+..+........|+++++||+|+...+.++.++++.+++.++++|++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888776667889999999999988888999999999999999999999999999999999999


Q ss_pred             Hhccc
Q 029029          169 KRLPR  173 (200)
Q Consensus       169 ~~~~~  173 (200)
                      +++.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=214.73  Aligned_cols=171  Identities=28%  Similarity=0.494  Sum_probs=154.1

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      +.+.+.+||+|+|.+|||||||+++|+.+.+...+.++. .+.....+.+++..+.+.+||++|++++...+..++.++|
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence            356778999999999999999999999999888777665 4555677888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDI  163 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (200)
                      ++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+....+++..+++.++++|++|||++|.||+++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999999999987664 3468899999999999888888899999999999999999999999999999


Q ss_pred             HHHHHHhccccCC
Q 029029          164 FYEIAKRLPRVQP  176 (200)
Q Consensus       164 ~~~l~~~~~~~~~  176 (200)
                      |++|++.+.+.+.
T Consensus       160 f~~l~~~i~k~~~  172 (173)
T d2fn4a1         160 FEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-36  Score=211.45  Aligned_cols=165  Identities=51%  Similarity=0.855  Sum_probs=156.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+++||+|+|.+|||||||+++|..+.+...+.++.+..........+.....+.+||++|++.+...+..++..+|++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            46899999999999999999999999999988899988888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|||++++++++.+..|+..+........|+++|+||+|+.+.+.+..++++++++.++++|++|||++|.||+++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999988888777899999999999998888899999999999999999999999999999999999


Q ss_pred             HHhcc
Q 029029          168 AKRLP  172 (200)
Q Consensus       168 ~~~~~  172 (200)
                      ++++.
T Consensus       162 ~~~i~  166 (167)
T d1z0ja1         162 SRRIP  166 (167)
T ss_dssp             HHHCC
T ss_pred             HHhCC
Confidence            99874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=213.81  Aligned_cols=166  Identities=40%  Similarity=0.719  Sum_probs=154.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+|+|++|||||||+++|..+.+.....++.+.++....+.+++..+.+.+|||+|++.+...+..++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            46899999999999999999999999888888888888889999999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |+|.+++.++..+..|+..+........|+++|+||+|+.+..++..++++.+++.+++++++|||++|.||+++|.+|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~  163 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  163 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHH
Confidence            99999999999999999998887777899999999999988788889999999999999999999999999999999999


Q ss_pred             Hhcccc
Q 029029          169 KRLPRV  174 (200)
Q Consensus       169 ~~~~~~  174 (200)
                      +++...
T Consensus       164 ~~l~~~  169 (171)
T d2ew1a1         164 CRLISE  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            877543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=211.68  Aligned_cols=163  Identities=44%  Similarity=0.771  Sum_probs=153.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+|+|.+|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999888889888888888888899999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029           91 DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      |.+++.++..+..|+..+.....++.|+++|+||+|+.+.+....+++..+++.++++|++|||++|.||+++|.+|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888767789999999999998888888999999999999999999999999999999999998


Q ss_pred             ccc
Q 029029          171 LPR  173 (200)
Q Consensus       171 ~~~  173 (200)
                      +..
T Consensus       161 l~g  163 (164)
T d1yzqa1         161 LPG  163 (164)
T ss_dssp             SCC
T ss_pred             hCC
Confidence            763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-36  Score=210.52  Aligned_cols=167  Identities=71%  Similarity=1.080  Sum_probs=157.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      .-..+||+|+|.+|||||||+++|+.+.+...+.++.+..............+.+.+||++|++.+...+..+++++|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   82 (170)
T d1r2qa_           3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             ceeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceE
Confidence            34578999999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      ++++|.+++++++.+..|+..+.....++.|+++|+||+|+.+.+.++.++++.+++.++++|+++||++|.||+++|.+
T Consensus        83 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_          83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999999988877789999999999999888889999999999999999999999999999999999


Q ss_pred             HHHhccc
Q 029029          167 IAKRLPR  173 (200)
Q Consensus       167 l~~~~~~  173 (200)
                      |++++.+
T Consensus       163 l~~~i~~  169 (170)
T d1r2qa_         163 IAKKLPK  169 (170)
T ss_dssp             HHHTSCC
T ss_pred             HHHHHhh
Confidence            9998865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=210.02  Aligned_cols=163  Identities=45%  Similarity=0.776  Sum_probs=153.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      .-+||+|+|.+|+|||||+++|+++.+...+.++.+.++.......++..+.+.+||++|++.+...+..+++++|++|+
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            35899999999999999999999999988888888888888999999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |+|++++++++.+..|+..+........|+++++||+|+.+......++++.+++.+++++++|||++|.||+++|++|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887778899999999999988888888999999999999999999999999999999999


Q ss_pred             Hhc
Q 029029          169 KRL  171 (200)
Q Consensus       169 ~~~  171 (200)
                      +++
T Consensus       163 ~~i  165 (166)
T d1z0fa1         163 KKI  165 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-36  Score=209.32  Aligned_cols=165  Identities=30%  Similarity=0.513  Sum_probs=149.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|+|||||+++++++.+.+.+.++.+..+ ......++..+.+.+||++|.+.+......+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            3579999999999999999999999998888878776544 556778899999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFY  165 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~  165 (200)
                      +|||++++++|+.+..|+..+.+. ...+.|+++++||+|+.+.+.++.++++++++.++++|+++||+++. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999999999999999999988765 44689999999999999888899999999999999999999999876 9999999


Q ss_pred             HHHHhccc
Q 029029          166 EIAKRLPR  173 (200)
Q Consensus       166 ~l~~~~~~  173 (200)
                      .|++.+.+
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-36  Score=210.12  Aligned_cols=164  Identities=33%  Similarity=0.484  Sum_probs=149.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..+...++.++|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4578999999999999999999999998888888887664 566788999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+...+.++.++++.+++.++++|++|||++|.|++++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999888664 4568999999999999888889999999999999999999999999999999999


Q ss_pred             HHHhcc
Q 029029          167 IAKRLP  172 (200)
Q Consensus       167 l~~~~~  172 (200)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-36  Score=210.04  Aligned_cols=162  Identities=27%  Similarity=0.366  Sum_probs=132.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+|+|++|+|||||++++.+..... ..++. ...+...+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            699999999999999999999665433 33333 3344566778999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      |++++++++.+..|+..+.... ...+|+++|+||+|+.+.++++..+++.+++.++++|++|||++|.|++++|++|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999999987754 467899999999999888888999999999999999999999999999999999999


Q ss_pred             hcccc
Q 029029          170 RLPRV  174 (200)
Q Consensus       170 ~~~~~  174 (200)
                      .+..+
T Consensus       160 ~i~~~  164 (168)
T d2gjsa1         160 QIRLR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=8.5e-36  Score=209.15  Aligned_cols=164  Identities=32%  Similarity=0.561  Sum_probs=146.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +-+||+|+|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            457999999999999999999999999888888887654 4567789999999999999999998899999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |||.+++++++.+..|++.+.+. ..++.|+++|+||.|+.+.++++.++++.+++.++++|++|||++|.|++++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999988764 35789999999999998888899999999999999999999999999999999999


Q ss_pred             HHhccc
Q 029029          168 AKRLPR  173 (200)
Q Consensus       168 ~~~~~~  173 (200)
                      ++++..
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=210.75  Aligned_cols=164  Identities=33%  Similarity=0.473  Sum_probs=146.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+|+|.+|+|||||+++|+++.+.+.+.++.+..+ ......++..+.+.+||++|++.+......++..+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            68999999999999999999999988888888877544 45567788999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQ--GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      ||+++++++..+..|+..+...  ...++|+++|+||+|+.+.++++.++++++++.++++|++|||++|.||+++|..|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999998877653  23678999999999998888899999999999999999999999999999999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      ++.+.++
T Consensus       161 ~~~~~~~  167 (171)
T d2erxa1         161 LNLEKRR  167 (171)
T ss_dssp             HHTCCSS
T ss_pred             HHHHHHh
Confidence            9877654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=208.75  Aligned_cols=165  Identities=44%  Similarity=0.766  Sum_probs=150.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      -+||+|+|++|||||||+++++++.+...+.++.+...........+....+.+||++|++.+...+..++..+|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            47999999999999999999999998888888888888888888899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      ||++++++++.+..|+..+......++|+++|+||+|+...+....+++..+++.++++|+++||++|.||+++|.+|++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999999988877788999999999999888888999999999999999999999999999999999999


Q ss_pred             hcccc
Q 029029          170 RLPRV  174 (200)
Q Consensus       170 ~~~~~  174 (200)
                      .+.+.
T Consensus       163 ~i~~~  167 (173)
T d2a5ja1         163 EIYRK  167 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-35  Score=211.01  Aligned_cols=171  Identities=41%  Similarity=0.678  Sum_probs=159.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ..-+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            45689999999999999999999999999888999999988889999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|||.++++++..+..|+..+......+.|+++|+||.|+.+...+..++...++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l  163 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM  163 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHH
Confidence            99999999999999999888887777899999999999999888899999999999999999999999999999999999


Q ss_pred             HHhccccCCCC
Q 029029          168 AKRLPRVQPAP  178 (200)
Q Consensus       168 ~~~~~~~~~~~  178 (200)
                      ++.+.+.....
T Consensus       164 ~~~i~~~~~~~  174 (194)
T d2bcgy1         164 ARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHCCHH
T ss_pred             HHHHHHHhhhc
Confidence            99988765443

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-35  Score=205.47  Aligned_cols=163  Identities=57%  Similarity=0.957  Sum_probs=152.1

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      .+||+|+|++|+|||||+++++++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999999998999999888888999999999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC---CCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD---ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      ||.+++.+++.+..|+..+........|+++++||.|+.+   .+.+..++++++++.++++|+++||++|.||+++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888887777899999999999854   3677889999999999999999999999999999999


Q ss_pred             HHHhcc
Q 029029          167 IAKRLP  172 (200)
Q Consensus       167 l~~~~~  172 (200)
                      |+++|.
T Consensus       163 i~~~i~  168 (170)
T d1ek0a_         163 IGEKIP  168 (170)
T ss_dssp             HHTTSC
T ss_pred             HHHHhc
Confidence            998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=207.33  Aligned_cols=166  Identities=32%  Similarity=0.540  Sum_probs=145.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      .++||+|+|.+|||||||+++++++.+...+.++.+ ........+++..+.+.+||++|.+.+......++..+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            458999999999999999999999988888877765 4456677789999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |||.+++++++.+..|+..+... .....|+++|+||+|+.+.+.+..++++.+++.++++|++|||++|.||+++|.+|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999876653 34678999999999998888899999999999999999999999999999999999


Q ss_pred             HHhccccC
Q 029029          168 AKRLPRVQ  175 (200)
Q Consensus       168 ~~~~~~~~  175 (200)
                      ++.+.+.+
T Consensus       163 ~~~i~k~~  170 (171)
T d2erya1         163 VRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99886543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=207.85  Aligned_cols=167  Identities=41%  Similarity=0.692  Sum_probs=155.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+|+|.+|||||||+++|..+.+...+.++.+.+........++....+.+||++|++++...+..++..+|++|
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            34689999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      +|+|.++++++..+..|+..+......++|+++++||+|+.............+++.++++++++||++|.|++++|.++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            99999999999999999999888777889999999999998888888899999999999999999999999999999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      ++.+..+
T Consensus       163 ~~~i~~~  169 (174)
T d2bmea1         163 ARKILNK  169 (174)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-35  Score=209.70  Aligned_cols=169  Identities=30%  Similarity=0.492  Sum_probs=145.1

Q ss_pred             CCCCCCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q 029029            1 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   80 (200)
Q Consensus         1 ~~~~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   80 (200)
                      |++. .....+||+|+|.+|||||||+++|+.+.+...+.++.+. .........+..+.+.+||++|++.+...+..++
T Consensus         1 m~~~-~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~   78 (185)
T d2atxa1           1 MAHG-PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY   78 (185)
T ss_dssp             CSSC-CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred             CCCC-CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhcc
Confidence            4554 3577999999999999999999999999988888888764 4456666788899999999999999999999999


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcC-
Q 029029           81 RGAAAAIIVYDITNQASFERAKK-WVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENG-  146 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-  146 (200)
                      ..+|++++|||++++++|+.+.. |+..+... ..+.|+++|+||+|+.+            .+.+..+++.++++.++ 
T Consensus        79 ~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~  157 (185)
T d2atxa1          79 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA  157 (185)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred             cccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCC
Confidence            99999999999999999998755 44445444 56899999999999864            35678889999999887 


Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          147 LFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       147 ~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      ++|++|||++|.||+++|+.+++.+.
T Consensus       158 ~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         158 CCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            68999999999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=207.64  Aligned_cols=164  Identities=37%  Similarity=0.585  Sum_probs=149.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+++||+|+|++|||||||+++|+++.+...+.++.+ +........++..+.+.+||++|++.+......++.++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            3679999999999999999999999998888877776 445667778899999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      +|||.+++.++..+..|+..+.... .++.|+++|+||+|+.+.+....+++..+++.++++|++|||++|.|++++|++
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            9999999999999999998887643 468899999999999888888999999999999999999999999999999999


Q ss_pred             HHHhcc
Q 029029          167 IAKRLP  172 (200)
Q Consensus       167 l~~~~~  172 (200)
                      |++++.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=206.41  Aligned_cols=166  Identities=43%  Similarity=0.765  Sum_probs=151.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+|+|++|||||||+++++++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..+|++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            45899999999999999999999999888888888888888888999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |||.++++++..+..|+..+.....+++|+++|+||+|+.+.+....+....+...++.+++++||++|.|++++|++++
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988777888888899999999999999999999999999999


Q ss_pred             Hhcccc
Q 029029          169 KRLPRV  174 (200)
Q Consensus       169 ~~~~~~  174 (200)
                      +.+...
T Consensus       163 ~~i~~~  168 (175)
T d2f9la1         163 TEIYRI  168 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-35  Score=209.11  Aligned_cols=166  Identities=37%  Similarity=0.702  Sum_probs=125.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +-+||+|+|.+|||||||+++|+++.+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            45899999999999999999999888888888888888888999999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |||++++.++..+..|+..+......+.|+++|+||.|+...+....+++..++..++++|++|||++|.|++++|++|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887778899999999999988888888889999999999999999999999999999999


Q ss_pred             Hhcccc
Q 029029          169 KRLPRV  174 (200)
Q Consensus       169 ~~~~~~  174 (200)
                      +.+.+.
T Consensus       165 ~~i~~k  170 (173)
T d2fu5c1         165 RDIKAK  170 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=206.75  Aligned_cols=165  Identities=24%  Similarity=0.384  Sum_probs=142.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +.+||+++|++|+|||||+++|..+.+...+.++.+. ........++..+.+.+||++|++++...+..++..+|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            4689999999999999999999999998888888874 345666778889999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHc-CCcEEEecCC
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQEN-GLFFMETSAK  155 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~-~~~~~~~Sa~  155 (200)
                      |||++++++|+.+..|+.........+.|+++|+||+|+.+.            ..+..++++++++.+ +++|++|||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            999999999999976555544444578999999999998532            357888899999886 4799999999


Q ss_pred             CCCCHHHHHHHHHHhcccc
Q 029029          156 TATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       156 ~~~~i~~~~~~l~~~~~~~  174 (200)
                      +|.||+++|+.+++.+.+.
T Consensus       161 ~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTSC
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999876543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-35  Score=204.62  Aligned_cols=164  Identities=34%  Similarity=0.577  Sum_probs=147.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ++++||+|+|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++.++|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            3678999999999999999999999999888888877554 555677888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-cCCcEEEecCCCCCCHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      +|||++++++|+.+..|+..+.+. ..++.|+++|+||+|+........++...+++. .+++|++|||++|.|++++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999999999888764 346889999999999988888888888999877 478999999999999999999


Q ss_pred             HHHHhcc
Q 029029          166 EIAKRLP  172 (200)
Q Consensus       166 ~l~~~~~  172 (200)
                      +|++++.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=205.11  Aligned_cols=163  Identities=36%  Similarity=0.532  Sum_probs=143.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|++|||||||+++++++.+...+.|+.+..+. .....++..+.+.+||++|++.+. ....++.++|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            689999999999999999999999998888888877654 445668889999999999998764 556688999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEI  167 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l  167 (200)
                      ||+++++++..+..|+..... ....+.|+++|+||+|+.+.+.++.++++.+++.++++|++|||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999888766544 334689999999999998888899999999999999999999999998 599999999


Q ss_pred             HHhcccc
Q 029029          168 AKRLPRV  174 (200)
Q Consensus       168 ~~~~~~~  174 (200)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=204.31  Aligned_cols=162  Identities=30%  Similarity=0.448  Sum_probs=141.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      +.||+|+|++|+|||||++++..+.+...+.++.+ .........++..+.+.+||++|++.+...+..++.++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999998888878776 44456677788999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcCC-cEEEecCCC
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENGL-FFMETSAKT  156 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (200)
                      ||++++++|+.+..|+........++.|+++|+||+|+.+.            +.+..++++.+++.++. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999876655544444578999999999998642            45778889999999884 799999999


Q ss_pred             CCCHHHHHHHHHHhcc
Q 029029          157 ATNVNDIFYEIAKRLP  172 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~  172 (200)
                      |.||+++|+.+++.+.
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=201.88  Aligned_cols=165  Identities=42%  Similarity=0.710  Sum_probs=142.8

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCc-ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ...+||+|+|+++||||||+++++.+.+... ..++.+.+.....+..++..+.+.+|||+|++.+...+..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            4568999999999999999999998887544 455567788888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      ++|||.++++++..+..|+..+........|+++++||.|+.+...+..+++..+++.++++|+++||++|.|++++|.+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  163 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  163 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999988887776778899999999999888889999999999999999999999999999999999


Q ss_pred             HHHhcc
Q 029029          167 IAKRLP  172 (200)
Q Consensus       167 l~~~~~  172 (200)
                      |++.+.
T Consensus       164 l~~~i~  169 (170)
T d2g6ba1         164 IAKELK  169 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHcC
Confidence            998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-36  Score=210.16  Aligned_cols=163  Identities=31%  Similarity=0.571  Sum_probs=142.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      ..+||+++|++|+|||||+++|+++.+...+.++.+.++.......++..+.+.+||++|+..+...+..+++++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            46899999999999999999999999888888999988888888889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIA  168 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (200)
                      |||++++++|+.+..|+..+.... ++.|+++|+||+|+...+..  ++...++...+++|+++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999887753 57999999999999765433  345677888999999999999999999999999


Q ss_pred             Hhcccc
Q 029029          169 KRLPRV  174 (200)
Q Consensus       169 ~~~~~~  174 (200)
                      +.+...
T Consensus       159 ~~l~~~  164 (170)
T d1i2ma_         159 RKLIGD  164 (170)
T ss_dssp             HHHHTC
T ss_pred             HHHccC
Confidence            988653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=200.66  Aligned_cols=163  Identities=32%  Similarity=0.571  Sum_probs=146.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +++||+|+|++|||||||+++|+++.+...+.++.+..+.. .....+..+.+.+||++|.+.+......++..++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            57899999999999999999999999888888888766544 45678889999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI  167 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (200)
                      |+|.+++.+++.+..|+..+.... ..++|+++|+||+|+.. +....++++++++.++++|++|||++|.||+++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999987753 46789999999999864 5677889999999999999999999999999999999


Q ss_pred             HHhccc
Q 029029          168 AKRLPR  173 (200)
Q Consensus       168 ~~~~~~  173 (200)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-34  Score=201.47  Aligned_cols=164  Identities=43%  Similarity=0.742  Sum_probs=145.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      -+||+++|.+|+|||||+++|+.+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK  169 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (200)
                      ||.+++.+++.+..|+..+........|++++++|.|+.. +....++++.+++.+++++++|||++|.|++++|.+|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999888888778899999999999854 456788899999999999999999999999999999999


Q ss_pred             hcccc
Q 029029          170 RLPRV  174 (200)
Q Consensus       170 ~~~~~  174 (200)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            87653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-35  Score=207.52  Aligned_cols=166  Identities=34%  Similarity=0.584  Sum_probs=147.1

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECC----------eEEEEEEEeCCCccccccchhh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND----------ATVKFEIWDTAGQERYHSLAPM   78 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~~~~   78 (200)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++          ....+.+||++|++.+..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            458999999999999999999999888888777777776666655432          3578999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCC
Q 029029           79 YYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA  157 (200)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (200)
                      +++++|++|+|||++++.+++.+..|+..+.... ....|+++|+||.|+.+.+.+..+++..+++.++++|+++||++|
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~  163 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATG  163 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCC
Confidence            9999999999999999999999999988776543 367889999999999988889999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhcccc
Q 029029          158 TNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       158 ~~i~~~~~~l~~~~~~~  174 (200)
                      .|++++|++|++.+.++
T Consensus       164 ~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         164 QNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             BTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999988654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-34  Score=201.63  Aligned_cols=167  Identities=28%  Similarity=0.422  Sum_probs=142.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      .++.+||+|+|.+|||||||+++|+.+.+...+.++.+. .....+..++..+.+.+||++|++.+...+..++..+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            357899999999999999999999999988888888763 4456677889999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC------------CCCCHHHHHHHHHHcC-CcEEEec
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA------------RKVTAEEAQAYAQENG-LFFMETS  153 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  153 (200)
                      ++|||++++++|+.+..|+.........+.|+++|+||+|+.+.            ......+...+++.++ ++|++||
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999876444443333568999999999998543            2356677888888877 7899999


Q ss_pred             CCCCCCHHHHHHHHHHhcccc
Q 029029          154 AKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~  174 (200)
                      |++|.||+++|+.|++.+...
T Consensus       161 Ak~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCC
Confidence            999999999999999987643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=198.42  Aligned_cols=166  Identities=38%  Similarity=0.681  Sum_probs=152.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ...+||+|+|++|+|||||+++|.++.+...+.+..+.......+.+++..+.+.+|||+|++.+...+..++..+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45789999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG-NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE  166 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (200)
                      +|||++++.++..+..|+..+.... ....|+++++||.|.. .+.+...+++.+++.++++++++||++|.|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887643 4578999999999975 4678888999999999999999999999999999999


Q ss_pred             HHHhcccc
Q 029029          167 IAKRLPRV  174 (200)
Q Consensus       167 l~~~~~~~  174 (200)
                      +++.+.+.
T Consensus       164 l~~~l~~~  171 (177)
T d1x3sa1         164 LVEKIIQT  171 (177)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccC
Confidence            99988865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-33  Score=196.13  Aligned_cols=160  Identities=36%  Similarity=0.642  Sum_probs=144.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCcEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAAAAI   87 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i   87 (200)
                      +.+||+++|++|||||||+++|+.+.+...+.++.+................+.+||++|...... .+..++.++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999999988888888888888899999999999999999876654 5677899999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC---CCCHHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT---ATNVNDI  163 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~  163 (200)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.++++.++++++++.++++|++|||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            999999999999999999988775 346899999999999988888999999999999999999999997   5699999


Q ss_pred             HHHHH
Q 029029          164 FYEIA  168 (200)
Q Consensus       164 ~~~l~  168 (200)
                      |++|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99873

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=198.60  Aligned_cols=167  Identities=28%  Similarity=0.375  Sum_probs=140.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccC-cccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCcEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-HSLAPMYYRGAAAA   86 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~~   86 (200)
                      .-+||+++|++|+|||||+++|.+..... ...++.+.+.....+.+++....+.+||+++.... +.....++.++|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            45899999999999999999999766543 34456667778888889999999999998763211 22456678999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      |+|||++++.+++.+..|+..+... ..+++|+++|+||+|+.+.++++.++++.+++.++++|+++||++|.|++++|.
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~  161 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE  161 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHH
Confidence            9999999999999999999888764 346899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHhccccC
Q 029029          166 EIAKRLPRVQ  175 (200)
Q Consensus       166 ~l~~~~~~~~  175 (200)
                      +|++++..++
T Consensus       162 ~l~~~i~~rr  171 (172)
T d2g3ya1         162 GIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHcc
Confidence            9999887654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-33  Score=194.49  Aligned_cols=165  Identities=38%  Similarity=0.637  Sum_probs=145.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ..-+||+|+|++|||||||+++|+.+.+...+.++.+..........++..+.+.+||++|.......+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            45679999999999999999999999998888888888888888888999999999999999998889999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-CCcEEEecCCCCCCHHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-GLFFMETSAKTATNVND  162 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~  162 (200)
                      +++|.+++.+++.+..|++.+....    ..+.|+++|+||.|+.+ +.+..++++.+++.. .++|++|||++|.||++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            9999999999999999998876532    35789999999999865 578889999999876 58999999999999999


Q ss_pred             HHHHHHHhccc
Q 029029          163 IFYEIAKRLPR  173 (200)
Q Consensus       163 ~~~~l~~~~~~  173 (200)
                      +|++|++.+..
T Consensus       163 ~f~~l~~~il~  173 (174)
T d1wmsa_         163 AFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-33  Score=197.45  Aligned_cols=166  Identities=38%  Similarity=0.659  Sum_probs=131.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      -+||+|+|++|||||||+++|.++.+...+.++.+.......... +.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            379999999999999999999999988888787776666666554 3455779999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCC-CCCHHHHHHHHHHcC-CcEEEecCCCCCCHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDAR-KVTAEEAQAYAQENG-LFFMETSAKTATNVND  162 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  162 (200)
                      |||.+++.+++.+..|+..+....    ..++|+++++||+|+.+.+ .+..++++++++.++ ++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998876532    2578999999999997653 467788999998875 7899999999999999


Q ss_pred             HHHHHHHhccccC
Q 029029          163 IFYEIAKRLPRVQ  175 (200)
Q Consensus       163 ~~~~l~~~~~~~~  175 (200)
                      +|++|++.+.++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999876653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.1e-33  Score=197.62  Aligned_cols=163  Identities=39%  Similarity=0.688  Sum_probs=145.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+|+|.+|||||||+++|+++.+...+.++.+.++........+..+.+.+||++|...+...+..++..+|++++++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999888899999998999999999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQG----NPNMVMALAGNKADLLDARKVTAEEAQAYAQ-ENGLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~  165 (200)
                      |.+++.++..+..|+..+....    ...+|+++|+||+|+.+ +....++...++. ..++++++|||++|.||+++|+
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            9999999999999998876642    24689999999999866 4566666777765 4678999999999999999999


Q ss_pred             HHHHhcccc
Q 029029          166 EIAKRLPRV  174 (200)
Q Consensus       166 ~l~~~~~~~  174 (200)
                      +|++.+.++
T Consensus       162 ~l~~~i~~~  170 (184)
T d1vg8a_         162 TIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999887664

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.8e-33  Score=195.54  Aligned_cols=163  Identities=26%  Similarity=0.426  Sum_probs=140.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV   89 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   89 (200)
                      ++||+++|.+|||||||+++++.+.++..+.++.+. ........++..+.+.+||++|++.+...+..++..+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            689999999999999999999999998888887754 4445566788899999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC------------CCCCCHHHHHHHHHHcC-CcEEEecCCC
Q 029029           90 YDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD------------ARKVTAEEAQAYAQENG-LFFMETSAKT  156 (200)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (200)
                      ||++++++|+.+..|+........++.|+++|+||+|+..            .+.+..++...+++.++ ++|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999987665554444456899999999999853            34578889999998887 4799999999


Q ss_pred             CC-CHHHHHHHHHHhccc
Q 029029          157 AT-NVNDIFYEIAKRLPR  173 (200)
Q Consensus       157 ~~-~i~~~~~~l~~~~~~  173 (200)
                      |. +++++|+.+++.+..
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999887653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.7e-31  Score=184.17  Aligned_cols=162  Identities=25%  Similarity=0.385  Sum_probs=134.2

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   86 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   86 (200)
                      ..+.+||+++|++|||||||+++++++.+.. ..++.+. .+...+.+++..+.+.+||++|+..+     .+++.+|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCE-EEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccce-eEEEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence            4568999999999999999999999888754 3344433 44667788999999999999998753     478899999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEeCcCccC--CCCCCHHHHHHHHHH-cCCcEEEecCCCCCCH
Q 029029           87 IIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLD--ARKVTAEEAQAYAQE-NGLFFMETSAKTATNV  160 (200)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  160 (200)
                      |+|||++++++|+.+..|+..+....   ....|+++|+||.|+..  .+.+..+++..++.. ++++|++|||++|.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            99999999999999999988876542   36779999999888743  456778888888654 5789999999999999


Q ss_pred             HHHHHHHHHhccccC
Q 029029          161 NDIFYEIAKRLPRVQ  175 (200)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (200)
                      +++|..+++++....
T Consensus       155 ~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         155 DRVFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999886653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=8.8e-32  Score=187.79  Aligned_cols=157  Identities=25%  Similarity=0.352  Sum_probs=128.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      .++||+++|++|||||||+++|.++.+...+.++.+..+..  ..  ..++.+.+||+||++.+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--ee--eeeEEEEEeeccccccccccccccccccchhhc
Confidence            36899999999999999999999999888888887755432  33  345789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHHH
Q 029029           89 VYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVND  162 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      |+|++++++++....|+..+... ..+++|+++|+||.|+.+..  ...++.+..     +..+++++++||++|.|+++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            99999999999998888777554 34689999999999986532  233332222     23455799999999999999


Q ss_pred             HHHHHHHhc
Q 029029          163 IFYEIAKRL  171 (200)
Q Consensus       163 ~~~~l~~~~  171 (200)
                      +|+||++.+
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.7e-30  Score=181.29  Aligned_cols=158  Identities=21%  Similarity=0.281  Sum_probs=123.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +.+||+|+|++|||||||+++|.+..+ ....++.+....  .+  +...+.+.+||++|++.++..+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~--~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK--TL--EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE--EE--EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee--ec--cccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            468999999999999999999986554 445566654332  23  3345789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH-----HcCCcEEEecCCCCCCHHH
Q 029029           89 VYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ-----ENGLFFMETSAKTATNVND  162 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  162 (200)
                      ++|.++..++.....++..... ....+.|+++|+||+|+.+..  ...+......     ..++++++|||++|.|+++
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            9999999999888766655544 334789999999999986543  3333333321     2245789999999999999


Q ss_pred             HHHHHHHhccc
Q 029029          163 IFYEIAKRLPR  173 (200)
Q Consensus       163 ~~~~l~~~~~~  173 (200)
                      +|+||.+.+..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.1e-30  Score=182.62  Aligned_cols=160  Identities=23%  Similarity=0.315  Sum_probs=124.1

Q ss_pred             CCCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCc
Q 029029            5 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   84 (200)
Q Consensus         5 ~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   84 (200)
                      ....+++||+++|++|||||||+++|.++.+. ...++.+.+.  ..+..  .++.+.+||++|++.++..+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~--~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNI--KSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEE--EEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeE--EEecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            34467899999999999999999999876653 2334444332  23333  3578999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCC
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTAT  158 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~  158 (200)
                      ++|+|||++++.++..+..|+..+... ...++|+++++||.|+.+..  ......+..     +...+.+++|||++|.
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            999999999999999998877766553 33678999999999997543  222232222     2234579999999999


Q ss_pred             CHHHHHHHHHHhc
Q 029029          159 NVNDIFYEIAKRL  171 (200)
Q Consensus       159 ~i~~~~~~l~~~~  171 (200)
                      |++++|+||++.+
T Consensus       164 gv~e~~~~l~~~i  176 (176)
T d1fzqa_         164 GVQDGMNWVCKNV  176 (176)
T ss_dssp             THHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=5.9e-31  Score=186.53  Aligned_cols=162  Identities=22%  Similarity=0.338  Sum_probs=123.0

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      ...+.+||+++|++|||||||+++|.++.+. ...++.+.....  ..  .....+.+||++|++.+...+..++..+|+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET--LS--YKNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEE--EE--ETTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEE--Ee--eCCEEEEEEecccccccchhHHhhhcccee
Confidence            4567899999999999999999999866554 344555544322  22  235789999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHH-----HHHcCCcEEEecCCCCCC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAY-----AQENGLFFMETSAKTATN  159 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~  159 (200)
                      +++|+|++++.++.....|+...... ...+.|+++++||+|+.+.  .+..++...     +...++++++|||++|.|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            99999999999999988887665443 3467999999999998543  333333332     123455799999999999


Q ss_pred             HHHHHHHHHHhcccc
Q 029029          160 VNDIFYEIAKRLPRV  174 (200)
Q Consensus       160 i~~~~~~l~~~~~~~  174 (200)
                      ++++|+||.+.+.+.
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999988654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=2.6e-30  Score=181.77  Aligned_cols=157  Identities=22%  Similarity=0.408  Sum_probs=121.7

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+.+||+++|++|||||||+++|.++.... ..++.+...    .......+.+.+||+||+..++..+..++..++++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            457999999999999999999998666533 333333322    222234578999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHH-----HHHcCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAY-----AQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      +|+|.++++++..+..|+...... .....|+++++||+|+.+.  ....++...     +...++.+++|||++|+|++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999998877766543 3467999999999998643  233333222     22235578999999999999


Q ss_pred             HHHHHHHHhc
Q 029029          162 DIFYEIAKRL  171 (200)
Q Consensus       162 ~~~~~l~~~~  171 (200)
                      ++|+||.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=2.8e-28  Score=168.64  Aligned_cols=154  Identities=19%  Similarity=0.333  Sum_probs=121.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEE
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   90 (200)
                      +||+|+|++|||||||+++|.++.+.........     .....+...+.+.+||++|...+......++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999998776544332221     22334456788999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHH-----HHHHHcCCcEEEecCCCCCCHHHHH
Q 029029           91 DITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQ-----AYAQENGLFFMETSAKTATNVNDIF  164 (200)
Q Consensus        91 d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (200)
                      |..++.++..+..|+..+... .....|+++++||.|+.+..  ...+..     .+++..+++++++||++|.|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            999999999987777766553 34678999999999986532  222222     2233456689999999999999999


Q ss_pred             HHHHHhc
Q 029029          165 YEIAKRL  171 (200)
Q Consensus       165 ~~l~~~~  171 (200)
                      +||.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.2e-26  Score=162.21  Aligned_cols=166  Identities=16%  Similarity=0.127  Sum_probs=111.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccc--------hhhh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--------APMY   79 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   79 (200)
                      .+.-.|+|+|.+|+|||||+++|++.... ......+++...........+..+.+|||||.......        ....
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCce-eecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccc
Confidence            44568999999999999999999975432 22233333322222222233457999999997543222        2234


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCCCC
Q 029029           80 YRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTAT  158 (200)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  158 (200)
                      +..+|++++|+|.+++.... ...|+..++.. ..+.|+++|+||+|+....   .+....+.+..+ ..++++||++|.
T Consensus        82 ~~~ad~il~v~D~~~~~~~~-~~~i~~~l~~~-~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPE-DELVARALKPL-VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHH-HHHHHHHHGGG-TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccccceeeeechhhhhccc-ccchhhheecc-ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence            67899999999998864322 23344444433 4578999999999986532   233344444444 468899999999


Q ss_pred             CHHHHHHHHHHhccccCCCCCC
Q 029029          159 NVNDIFYEIAKRLPRVQPAPNP  180 (200)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~~~~~  180 (200)
                      |+++++++|.+.+.+ .|..+|
T Consensus       157 gi~~L~~~i~~~lpe-~p~~~p  177 (178)
T d1wf3a1         157 QVAELKADLLALMPE-GPFFYP  177 (178)
T ss_dssp             HHHHHHHHHHTTCCB-CCCSSC
T ss_pred             CHHHHHHHHHHhCCC-CCCCCC
Confidence            999999999998876 344444

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=8.4e-26  Score=158.78  Aligned_cols=158  Identities=20%  Similarity=0.338  Sum_probs=116.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      .+++||+|+|.+|||||||+++|.++.+.. ..++.+...  ....  .....+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNV--EEIV--INNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSC--EEEE--ETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeE--EEEe--ecceEEEEeccccccccccchhhhhccceeee
Confidence            567999999999999999999999876643 223333222  1222  23468999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEeCcCccCCCCCCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q 029029           88 IVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYA-----QENGLFFMETSAKTATNVN  161 (200)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (200)
                      +++|.++..++.....++...... .....|+++|+||+|+....  ...+.....     ...+++++++||++|.|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999998888776555544432 34689999999999986543  233333332     2244579999999999999


Q ss_pred             HHHHHHHHhcc
Q 029029          162 DIFYEIAKRLP  172 (200)
Q Consensus       162 ~~~~~l~~~~~  172 (200)
                      ++|+||.+++.
T Consensus       166 e~~~~L~~~lk  176 (177)
T d1zj6a1         166 QGLEWMMSRLK  176 (177)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=2.4e-25  Score=154.85  Aligned_cols=159  Identities=22%  Similarity=0.349  Sum_probs=120.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +++||+++|++|||||||++++.++.+.. ..++.+...    .........+.+||.+|...........+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV----ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE----EEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceee----eeeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            46899999999999999999999887654 233333222    2222335689999999999988898899999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHH-HHHhCCCCCeEEEEEeCcCccCCCCCCHHHHH-----HHHHHcCCcEEEecCCCCCCHHH
Q 029029           89 VYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQ-----AYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~-i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      ++|+.+..++.....++.. +........|+++++||.|+.+...  ..+..     .++...+++++++||++|.|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  156 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  156 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc--HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH
Confidence            9999988777777555444 3334456789999999999865432  22222     22344567899999999999999


Q ss_pred             HHHHHHHhcccc
Q 029029          163 IFYEIAKRLPRV  174 (200)
Q Consensus       163 ~~~~l~~~~~~~  174 (200)
                      +|++|++.+..+
T Consensus       157 ~~~~l~~~l~~k  168 (169)
T d1upta_         157 AMEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.1e-24  Score=153.59  Aligned_cols=166  Identities=17%  Similarity=0.133  Sum_probs=109.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc----cc---chhhhhcCCc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HS---LAPMYYRGAA   84 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~---~~~~~~~~~d   84 (200)
                      +|+|+|.+|||||||+|+|++...........+... ............+++|||||....    ..   .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCC-EEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceee-eeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            599999999999999999986543222112222222 222333344557899999994321    11   1223467899


Q ss_pred             EEEEEEeCCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           85 AAIIVYDITNQ--ASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        85 ~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      ++++++|....  ........|+...... ..++|+++|+||+|+.+.+.  .+...+.....+.+++++||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998753  2233333443332211 23578999999999876432  3345555566788999999999999999


Q ss_pred             HHHHHHHhccccCCCCCCC
Q 029029          163 IFYEIAKRLPRVQPAPNPS  181 (200)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~  181 (200)
                      +++.|.+.+....+...|.
T Consensus       159 L~~~i~~~l~~~~~~~~~~  177 (180)
T d1udxa2         159 LKEALHALVRSTPPPEMPK  177 (180)
T ss_dssp             HHHHHHHHHHTSCCCCCCC
T ss_pred             HHHHHHHHHhhcCCCcCCC
Confidence            9999999887665544443

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.2e-25  Score=155.74  Aligned_cols=152  Identities=20%  Similarity=0.221  Sum_probs=107.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYYRG   82 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   82 (200)
                      +||+++|++|||||||+++|++.... ......+++...........+..+.+||++|......        ....++..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce-EeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            79999999999999999999965542 2222233332222222323345788999999643322        12335688


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      +|++++++|..++.+++....|...+... ..+.|+++|+||+|+.......       .+..+.+++++||++|.|+++
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~~  152 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVDV  152 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHHH
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHHH
Confidence            99999999999877666666665555544 4578999999999986543211       123456899999999999999


Q ss_pred             HHHHHHHhc
Q 029029          163 IFYEIAKRL  171 (200)
Q Consensus       163 ~~~~l~~~~  171 (200)
                      ++++|.+.+
T Consensus       153 L~~~l~~~l  161 (161)
T d2gj8a1         153 LRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhC
Confidence            999999864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.2e-23  Score=145.50  Aligned_cols=151  Identities=19%  Similarity=0.247  Sum_probs=117.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEe
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYD   91 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   91 (200)
                      ||+++|++|||||||+++|.++.+. ...++.+...    .........+.+||++|..........++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS----EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEE----EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeE----EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            8999999999999999999987754 3455555333    2333445679999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHH------------HcCCcEEEecCCCCC
Q 029029           92 ITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQ------------ENGLFFMETSAKTAT  158 (200)
Q Consensus        92 ~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  158 (200)
                      .++...+.....|+..... ....+.|+++++||.|+...  ....+......            ...+.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999888887666655544 34478899999999998542  34444433321            123468999999999


Q ss_pred             CHHHHHHHHHH
Q 029029          159 NVNDIFYEIAK  169 (200)
Q Consensus       159 ~i~~~~~~l~~  169 (200)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.2e-24  Score=154.92  Aligned_cols=156  Identities=23%  Similarity=0.271  Sum_probs=113.3

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +++||+++|..|||||||+++|..+.++     +.+.    .+..+......+++||++|++.+...+..++..++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSE----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC-----CccE----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            4789999999999999999999865543     2332    223344456789999999999999999999999999999


Q ss_pred             EEeCCCHHHH-----------HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC---------------CCCHHHHHHHH
Q 029029           89 VYDITNQASF-----------ERAKKWVQELQAQGNPNMVMALAGNKADLLDAR---------------KVTAEEAQAYA  142 (200)
Q Consensus        89 v~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~---------------~~~~~~~~~~~  142 (200)
                      |+|.++.+++           +....|...+........|+++++||.|+...+               .....+.....
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999887654           223344444544445788999999999963211               11222222111


Q ss_pred             H----H-------cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          143 Q----E-------NGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       143 ~----~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      .    .       ..+.+++|||+++.||+++|+.+.+.+.+
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            1    1       12357799999999999999999887754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.2e-25  Score=156.64  Aligned_cols=160  Identities=18%  Similarity=0.201  Sum_probs=122.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +++||+++|..|||||||++++..+.+.  +.|+.|....    .+......+++||++|++.++..+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeE
Confidence            4789999999999999999999877763  5678776543    233456789999999999999999999999999999


Q ss_pred             EEeCCCHH-----------HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC----------------CCCHHHHHHH
Q 029029           89 VYDITNQA-----------SFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR----------------KVTAEEAQAY  141 (200)
Q Consensus        89 v~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~----------------~~~~~~~~~~  141 (200)
                      ++|.++.+           .++....|...+......+.|+++++||.|+.+..                .........+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998754           34455677777766666789999999999974321                1223333333


Q ss_pred             HHH----------cCCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          142 AQE----------NGLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       142 ~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                      ...          ..+.+++|||++|.||+++|+.+.+.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            221          123478999999999999999998887653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=5.3e-23  Score=144.97  Aligned_cols=159  Identities=18%  Similarity=0.220  Sum_probs=114.0

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   85 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   85 (200)
                      -.++..||+++|++|||||||+++|.++.+.. ..++.+.+..  ....++  ..+.+||+.+.......+..+....++
T Consensus         9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (186)
T d1f6ba_           9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING   83 (186)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eeccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccce
Confidence            34678999999999999999999999766543 3344433332  233333  468899999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHc-----------------CC
Q 029029           86 AIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN-----------------GL  147 (200)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~  147 (200)
                      +++++|.++...+.....++..... ....+.|+++++||.|+...  .....+.......                 ++
T Consensus        84 ~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (186)
T d1f6ba_          84 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPL  161 (186)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             eeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCC
Confidence            9999999998888777655444433 33478999999999997543  4455454444321                 23


Q ss_pred             cEEEecCCCCCCHHHHHHHHHHhc
Q 029029          148 FFMETSAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       148 ~~~~~Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ++++|||++|+|++++|+||.+.+
T Consensus       162 ~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         162 EVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHhh
Confidence            589999999999999999999876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=4.8e-24  Score=149.07  Aligned_cols=158  Identities=20%  Similarity=0.143  Sum_probs=101.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchhhhhcC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAPMYYRG   82 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~   82 (200)
                      +|+|+|++|||||||+++|++... .......+.+.......+......+.+||++|...         +......++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-ceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            699999999999999999995433 22333444444334444444556799999999422         12223334678


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029           83 AAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                      +|+++++.|.++.... ....++..+...   ++|+++|+||+|+.+..  ..+....+.+.....++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~-~~~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITK-EDESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCH-HHHHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeecccccccc-cccccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            9999999998865332 224445555544   57899999999985421  12222223223334678999999999999


Q ss_pred             HHHHHHHhccccCC
Q 029029          163 IFYEIAKRLPRVQP  176 (200)
Q Consensus       163 ~~~~l~~~~~~~~~  176 (200)
                      ++++|.+++.+...
T Consensus       155 L~~~i~~~l~e~~~  168 (171)
T d1mkya1         155 MLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCCC
Confidence            99999998876544

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=4.3e-23  Score=145.28  Aligned_cols=164  Identities=16%  Similarity=0.117  Sum_probs=106.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccC-----cceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-----TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR   81 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   81 (200)
                      ..+.++|+++|++++|||||+|+|++.........     ..+.+..............+.++|++|+..+.......+.
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence            45678999999999999999999985332111110     1111111111112223456899999999988888888899


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHHH----cCCcEEEecCC
Q 029029           82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQE----NGLFFMETSAK  155 (200)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~Sa~  155 (200)
                      .+|++++++|.++.... +....+..+..   .++|+++|+||+|+.+.....  .+..+.+.+.    .+.+++++||+
T Consensus        82 ~~d~~ilv~d~~~g~~~-~~~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKT-QTGEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hccccccccccccccch-hhhhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            99999999999975322 22223333333   468999999999986543211  1112222222    24589999999


Q ss_pred             CCCCHHHHHHHHHHhcccc
Q 029029          156 TATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       156 ~~~~i~~~~~~l~~~~~~~  174 (200)
                      +|.|++++++.|.+.+...
T Consensus       158 ~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhcCCcc
Confidence            9999999999999877643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.1e-22  Score=143.80  Aligned_cols=161  Identities=18%  Similarity=0.150  Sum_probs=104.0

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEE--EEEECCeEEEEEEEeCCCcccc-----------
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQ--TLAVNDATVKFEIWDTAGQERY-----------   72 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~-----------   72 (200)
                      .....+||+|+|++|+|||||+|+|++..... .....+++....  ....+  +..+.++|+||....           
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFID--GRKYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEE-ECCCC------CCEEEEET--TEEEEESSCSCC-----------CCS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCcce-eecccccccccceeeeccC--CceeeeeccCCccccccccccccccc
Confidence            33457999999999999999999999654321 111122222222  23333  356889999995321           


Q ss_pred             -ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH-----cC
Q 029029           73 -HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-----NG  146 (200)
Q Consensus        73 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~  146 (200)
                       .......+..+|++++++|.+.+.. .....++..+..   .+.|+++|+||+|+........++.......     ..
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             hhHHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence             1223334678999999999987532 222333344433   3679999999999876555555544444333     23


Q ss_pred             CcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          147 LFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       147 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      .+++++||++|.|+++++++|.+.+..
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            579999999999999999999776554

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=5.6e-23  Score=145.05  Aligned_cols=151  Identities=18%  Similarity=0.188  Sum_probs=98.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc---------------ccch
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------------HSLA   76 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------~~~~   76 (200)
                      .|+++|++|+|||||+|+|++....  .+...|++.........    .+.++||||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~--~~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce--eeCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            6999999999999999999976543  33444444333333333    3688999995211               1112


Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHH----------HHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERA----------KKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG  146 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~----------~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  146 (200)
                      ...++.+|++++++|...+......          ...++.+..   .++|+++|+||+|+.+..+   .....+.+...
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence            2345689999999999764322111          112233333   4689999999999764322   11222222222


Q ss_pred             -------CcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          147 -------LFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       147 -------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                             ..++++||++|.|+++++++|.+.+.++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                   2488999999999999999999987653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=3.2e-23  Score=143.17  Aligned_cols=150  Identities=19%  Similarity=0.177  Sum_probs=98.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc---------cchhhhhc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---------SLAPMYYR   81 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   81 (200)
                      +||+++|.+|+|||||+|+|++.... ......+.+...........+..+.+|||||.....         ......+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce-eeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            68999999999999999999965432 222333333222222232334678999999942110         11122357


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029           82 GAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      .+|++++|+|.+++.......-+ ..   .  ...++++++||+|+.+..  ..++.... ...+.+++++||++|.|++
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~~~-~~---~--~~~~~i~~~~k~d~~~~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi~  150 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRKIL-ER---I--KNKRYLVVINKVDVVEKI--NEEEIKNK-LGTDRHMVKISALKGEGLE  150 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHHHH-HH---H--TTSSEEEEEEECSSCCCC--CHHHHHHH-HTCSTTEEEEEGGGTCCHH
T ss_pred             hCCEEEEEEeCCCCcchhhhhhh-hh---c--ccccceeeeeeccccchh--hhHHHHHH-hCCCCcEEEEECCCCCCHH
Confidence            89999999999987554332211 11   1  346789999999987643  33333322 2345689999999999999


Q ss_pred             HHHHHHHHh
Q 029029          162 DIFYEIAKR  170 (200)
Q Consensus       162 ~~~~~l~~~  170 (200)
                      +++++|.++
T Consensus       151 ~L~~~I~ke  159 (160)
T d1xzpa2         151 KLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.8e-22  Score=144.23  Aligned_cols=158  Identities=19%  Similarity=0.261  Sum_probs=108.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   88 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   88 (200)
                      +.+||+++|.+|||||||++++.   +...+.|+.|....  .+  +.....+++||++|++.++..+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~--~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DF--EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EE--EETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EE--eeeeeeeeeecccceeeecccccccccccceeEE
Confidence            46899999999999999999993   44556778875432  23  3345789999999999999999999999999999


Q ss_pred             EEeCCCHH----------HHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCC----------------CCCHHHHHHH
Q 029029           89 VYDITNQA----------SFERAKKWVQELQA-QGNPNMVMALAGNKADLLDAR----------------KVTAEEAQAY  141 (200)
Q Consensus        89 v~d~~~~~----------s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~----------------~~~~~~~~~~  141 (200)
                      ++|.++..          .+.....++..+.. ....+.|+++++||.|+.+..                .-..+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            99998743          23444445555443 334689999999999984311                1122333333


Q ss_pred             HHH-----------cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          142 AQE-----------NGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       142 ~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ...           ..+.+++|||+++.||+++|+.+.+.+..
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            222           12446689999999999999998877654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=5e-22  Score=141.60  Aligned_cols=164  Identities=18%  Similarity=0.226  Sum_probs=109.6

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcc-cC----cceeeEEEEEE-------------------EECCeEEEEE
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ES----TIGAAFFSQTL-------------------AVNDATVKFE   62 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~-~~----~~~~~~~~~~~-------------------~~~~~~~~~~   62 (200)
                      +++.++|+++|+.++|||||+++|++....... ..    +....+.....                   ........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            567899999999999999999999864321110 00    11011111111                   0112346799


Q ss_pred             EEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHH
Q 029029           63 IWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQA  140 (200)
Q Consensus        63 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~  140 (200)
                      ++|+||+..|.......+..+|++++++|..+........+.+..+...+  ..++++++||+|+.+.....  .....+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999988888888889999999999987533333444555555542  24578899999987643211  222333


Q ss_pred             HHHHc---CCcEEEecCCCCCCHHHHHHHHHHhcc
Q 029029          141 YAQEN---GLFFMETSAKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       141 ~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (200)
                      +....   .++++++||++|.|++++++.+.+.+.
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            33322   357999999999999999999988764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.1e-20  Score=134.22  Aligned_cols=117  Identities=19%  Similarity=0.271  Sum_probs=86.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCcEEEEEE
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAIIVY   90 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~   90 (200)
                      +|+|+|++|||||||+++|+++.+... .++.+.+...... .......+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999998776543 3455444333222 24567789999999998775 56677889999999999


Q ss_pred             eCCCHHHH-HHHHHHHHHHHH---hCCCCCeEEEEEeCcCccCC
Q 029029           91 DITNQASF-ERAKKWVQELQA---QGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        91 d~~~~~s~-~~~~~~~~~i~~---~~~~~~~~ivv~nK~D~~~~  130 (200)
                      |.++..++ .....++..+..   .....+|+++++||+|+...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            99987653 344444444322   22356899999999999653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.85  E-value=9.1e-21  Score=135.97  Aligned_cols=166  Identities=14%  Similarity=0.161  Sum_probs=107.4

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCccc---C----cceeeEEEEEEE----------------------ECC
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE---S----TIGAAFFSQTLA----------------------VND   56 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~---~----~~~~~~~~~~~~----------------------~~~   56 (200)
                      +..+.++|+++|+.++|||||+++|++........   .    ..+.........                      ...
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            44667999999999999999999998522210000   0    001000000000                      011


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH-
Q 029029           57 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA-  135 (200)
Q Consensus        57 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~-  135 (200)
                      ....+.++|+||+..|...+...+..+|++|+|+|..+.-.....++.+......+  -.|++|++||+|+.+...... 
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~  161 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQ  161 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHH
Confidence            23579999999999988877778889999999999987532223334444444442  247899999999965432111 


Q ss_pred             -HHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          136 -EEAQAYAQEN---GLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       136 -~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                       .....+....   +++++++||++|.|++++++.|.+.+..
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence             1122222222   3679999999999999999999988764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=9.6e-22  Score=138.89  Aligned_cols=158  Identities=16%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc----ccchh---hhhcCC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----HSLAP---MYYRGA   83 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~~   83 (200)
                      .+|+|+|++|||||||+|+|++........+..+.......... .....+++|||||....    .....   ..+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC-SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEe-cCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            36999999999999999999865432111111111111112222 22346899999995321    11111   224568


Q ss_pred             cEEEEEEeCCCHHHHH---HHHHHH--HHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH--cCCcEEEecCCC
Q 029029           84 AAAIIVYDITNQASFE---RAKKWV--QELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE--NGLFFMETSAKT  156 (200)
Q Consensus        84 d~~i~v~d~~~~~s~~---~~~~~~--~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~  156 (200)
                      +.++++++........   ....+.  .........++|+++|+||+|+.+..    +....+.+.  .+.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            8888888776432221   111111  11111223578999999999986532    223334333  367899999999


Q ss_pred             CCCHHHHHHHHHHhccc
Q 029029          157 ATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~  173 (200)
                      |.|+++++++|.+.+..
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999998854

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=4.4e-21  Score=139.68  Aligned_cols=157  Identities=17%  Similarity=0.202  Sum_probs=101.3

Q ss_pred             EEEECCCCCCHHHHHHHHHhCcccCcccCcce--eeEEEEE--------------EEECCeEEEEEEEeCCCccccccch
Q 029029           13 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG--AAFFSQT--------------LAVNDATVKFEIWDTAGQERYHSLA   76 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~~i~D~~G~~~~~~~~   76 (200)
                      |+|+|++++|||||+++|++............  .......              ..++.....+.++||||+..+....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999986432211100000  0000000              1122344578999999999888887


Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC-------------HH-------
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT-------------AE-------  136 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~-------------~~-------  136 (200)
                      ...+..+|++|+|+|+.+.-.. .....+..+..   .++|+++++||+|+.......             ..       
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKP-QTQEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCccc-chhHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            7788999999999999874222 22344444444   367999999999986533211             00       


Q ss_pred             HHH----HHHHH--------------cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          137 EAQ----AYAQE--------------NGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       137 ~~~----~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ...    .+...              ..++++++||.+|.|++++++.|.....+
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            000    11110              01368999999999999999998876654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1e-20  Score=134.61  Aligned_cols=154  Identities=17%  Similarity=0.164  Sum_probs=93.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc-------------cchh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------------SLAP   77 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------------~~~~   77 (200)
                      .+|+|+|++|||||||+|+|++...........+.+..........   .+.+.|++|.....             ....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            3899999999999999999997554333334443333333333332   34556666632111             1111


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH----cCCcEEEec
Q 029029           78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE----NGLFFMETS  153 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~S  153 (200)
                      ..+..+|++++++|.+++.. .....+++.+...   ++|+++|+||+|+....... +......+.    ...+++++|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY---GIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhcccccc-ccccccccccccc---cCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEEe
Confidence            23456799999999986532 2223444555443   67899999999986543322 222323232    345789999


Q ss_pred             CCCCCCHHHHHHHHHHhcc
Q 029029          154 AKTATNVNDIFYEIAKRLP  172 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~  172 (200)
                      |++|.|+++++++|.+.+.
T Consensus       176 A~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHhC
Confidence            9999999999999988763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=8.1e-21  Score=134.85  Aligned_cols=161  Identities=16%  Similarity=0.153  Sum_probs=112.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcc--------------cCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQF--------------IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS   74 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   74 (200)
                      +.++|+++|+.++|||||+++|++...              ........|.+.......+......+.++|+||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            468999999999999999999985110              011122334555555566666677899999999999888


Q ss_pred             chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC---HHHHHHHHHHcC-----
Q 029029           75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT---AEEAQAYAQENG-----  146 (200)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~-----  146 (200)
                      .+...+..+|++|+|+|..+.. +.+.++.+......  ...|+|+++||+|+..+.+..   ..+++.+....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~-~~QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCC-chhHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            8888889999999999999753 23334445555554  235789999999986532211   123444444433     


Q ss_pred             CcEEEecCCCC----------CCHHHHHHHHHHhcc
Q 029029          147 LFFMETSAKTA----------TNVNDIFYEIAKRLP  172 (200)
Q Consensus       147 ~~~~~~Sa~~~----------~~i~~~~~~l~~~~~  172 (200)
                      ++++++||++|          .++.++++.+.+.+.
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            57999999988          488888888877654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.7e-20  Score=130.53  Aligned_cols=165  Identities=19%  Similarity=0.143  Sum_probs=103.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccC-cceeeEEEEEEEECCeEEEEEEEeCCCccc---------cccchh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES-TIGAAFFSQTLAVNDATVKFEIWDTAGQER---------YHSLAP   77 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~   77 (200)
                      +..-.|+|+|.+|+|||||+|+|++......... .............  ....+..+|++|...         ......
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeec--CCceeEeecCCCceecchhhhhhhhhhccc
Confidence            4556799999999999999999997554211111 1111111222222  233566788888432         122222


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcC-CcEEEecCCC
Q 029029           78 MYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKT  156 (200)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (200)
                      .....+++++++.|..+....  ...+...+..   ...|.++++||.|..............+....+ .+++++||++
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPD--DEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHH--HHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             cchhhcceeEEEEecCccchh--HHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            334568888889988764222  2222233322   456789999999976653333344455555555 4799999999


Q ss_pred             CCCHHHHHHHHHHhccccCCCCCC
Q 029029          157 ATNVNDIFYEIAKRLPRVQPAPNP  180 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~~~~~~  180 (200)
                      |.|+++++++|.+.+.+..+ ++|
T Consensus       156 g~gi~~L~~~i~~~lpe~~~-~yp  178 (179)
T d1egaa1         156 GLNVDTIAAIVRKHLPEATH-HFP  178 (179)
T ss_dssp             TTTHHHHHHHHHTTCCBCCC-SSC
T ss_pred             CCCHHHHHHHHHHhCCCCCC-CCC
Confidence            99999999999998876644 444

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=8.2e-21  Score=137.74  Aligned_cols=159  Identities=20%  Similarity=0.238  Sum_probs=112.1

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   87 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   87 (200)
                      ....||+++|+.|||||||++++..+.+    .|+.|...  ..+.++  ...+++||++|++.++..|..++..+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEEC--cEEEEEEecCccceeccchhhhcccccceE
Confidence            3568999999999999999999975543    36666443  334443  478999999999999999999999999999


Q ss_pred             EEEeCCCHH----------HHHHHHHHHHHHHH-hCCCCCeEEEEEeCcCccCCCC----C-------------------
Q 029029           88 IVYDITNQA----------SFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARK----V-------------------  133 (200)
Q Consensus        88 ~v~d~~~~~----------s~~~~~~~~~~i~~-~~~~~~~~ivv~nK~D~~~~~~----~-------------------  133 (200)
                      +++|.++..          .+.+...++..+.. ....++|++|++||+|+.+.+.    .                   
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            999998532          23333333444433 3346899999999999843210    0                   


Q ss_pred             -------CHHHHHHHH-----HHc--------CCcEEEecCCCCCCHHHHHHHHHHhcccc
Q 029029          134 -------TAEEAQAYA-----QEN--------GLFFMETSAKTATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       134 -------~~~~~~~~~-----~~~--------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (200)
                             ....+..+.     ..+        .+..+.|||.++.+|+.+|+.+.+.|...
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                   012222222     111        12356899999999999999887766543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=6.9e-19  Score=125.74  Aligned_cols=143  Identities=15%  Similarity=0.159  Sum_probs=93.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccC------------c---ccCcceeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIE------------F---QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   73 (200)
                      +.++|+++|+.++|||||+++|+...-..            .   ....-|.+.......+...+..+.++||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            46899999999999999999997421100            0   00011334333444444556789999999999998


Q ss_pred             cchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEeCcCccCCCCC---CHHHHHHHHHHcC---
Q 029029           74 SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKV---TAEEAQAYAQENG---  146 (200)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---  146 (200)
                      ..+...+..+|++|+|+|..+.... +..+.+......   ++| +++++||+|+.+....   -.++++.+....+   
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~-qt~~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            8888889999999999999875332 334445555554   444 7788999998653221   0122334343333   


Q ss_pred             --CcEEEecCC
Q 029029          147 --LFFMETSAK  155 (200)
Q Consensus       147 --~~~~~~Sa~  155 (200)
                        ++++..|+.
T Consensus       158 ~~i~~i~~sa~  168 (204)
T d2c78a3         158 DEVPVIRGSAL  168 (204)
T ss_dssp             TTSCEEECCHH
T ss_pred             ccceeeeeech
Confidence              457888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.74  E-value=1.4e-17  Score=120.05  Aligned_cols=155  Identities=22%  Similarity=0.201  Sum_probs=100.7

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHHhCcc--cCc-----------------------------ccCcceeeEEEEEE
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQF--IEF-----------------------------QESTIGAAFFSQTL   52 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~~-----------------------------~~~~~~~~~~~~~~   52 (200)
                      ...+...+||+++|+.++|||||+.+|+...-  ...                             .....+.+......
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            34566789999999999999999999974211  000                             00001111111222


Q ss_pred             EECCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC-CeEEEEEeCcCccCCC
Q 029029           53 AVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDAR  131 (200)
Q Consensus        53 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~ivv~nK~D~~~~~  131 (200)
                      ........+.++|+||+..+...+...+..+|++|+|+|..+... .+..+.+......   + ..+++++||+|+.+..
T Consensus        83 ~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~-~Qt~e~~~~~~~~---gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          83 YFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             EEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSC
T ss_pred             EEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcc-cchHHHHHHHHHc---CCCEEEEEEEcccccccc
Confidence            223345679999999999998888888899999999999987422 2233333444443   3 3488999999987643


Q ss_pred             CCCH----HHHHHHHHHcCC-----cEEEecCCCCCCHHH
Q 029029          132 KVTA----EEAQAYAQENGL-----FFMETSAKTATNVND  162 (200)
Q Consensus       132 ~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~  162 (200)
                      +...    .++..+.+..+.     +++++||.+|.|+.+
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            3222    234445555443     688999999998843

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=8.7e-18  Score=120.26  Aligned_cols=115  Identities=16%  Similarity=0.188  Sum_probs=80.8

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccccccchhhh----hcCCcE
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY----YRGAAA   85 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d~   85 (200)
                      ..+|+|+|++|||||||+|+|+++.+.+    +.+  .......+...+..+.+||+||++.+...+..+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVV--SQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC----BCC--CSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC----eEE--ecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4589999999999999999999876532    221  112233344555678999999998766555544    345688


Q ss_pred             EEEEEeCCC-HHHHHHHHHHHH----HHHHhCCCCCeEEEEEeCcCccCC
Q 029029           86 AIIVYDITN-QASFERAKKWVQ----ELQAQGNPNMVMALAGNKADLLDA  130 (200)
Q Consensus        86 ~i~v~d~~~-~~s~~~~~~~~~----~i~~~~~~~~~~ivv~nK~D~~~~  130 (200)
                      +++++|..+ ..+++....|+.    .+......++|+++++||+|+.+.
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            899999774 455555555543    334445578999999999998654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.1e-16  Score=112.31  Aligned_cols=161  Identities=13%  Similarity=0.103  Sum_probs=82.8

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc-------ch---
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-------LA---   76 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~---   76 (200)
                      ....++|+++|.+|+|||||+|+|++...........+................+..++.++......       ..   
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            34579999999999999999999986554322222222222222222222222222222222111111       11   


Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCH--HHHHHHHHHc--CCcEEEe
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTA--EEAQAYAQEN--GLFFMET  152 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~~--~~~~~~~  152 (200)
                      .......+.++.+.+...... .....++..+..   ...++++++||+|+.+......  +..++.....  ..+++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  168 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF  168 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred             hhhhhheeEEEEeecccccch-hHHHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence            111234455566666655322 222344444444   3567899999999865422211  1122222222  3478999


Q ss_pred             cCCCCCCHHHHHHHHHHhc
Q 029029          153 SAKTATNVNDIFYEIAKRL  171 (200)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~  171 (200)
                      ||++|.|++++++.|.+.+
T Consensus       169 SA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         169 SSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999987653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.5e-16  Score=117.58  Aligned_cols=115  Identities=16%  Similarity=0.116  Sum_probs=79.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCccc-Cc---------------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFI-EF---------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS   74 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   74 (200)
                      .+|+++|+.++|||||+.+|+...-. ..               ....-+.+.......+...+..+.++||||+..|..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            37999999999999999999752111 00               000111222222233333456899999999999999


Q ss_pred             chhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           75 LAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      .....+.-+|++|+|+|..+.-.... ...++....   .++|.++++||+|...
T Consensus        87 e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          87 EVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             THHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHT---TTCCEEEEEECTTSTT
T ss_pred             HHHHHHHhhhheEEeccccCCcchhH-HHHHHHHHH---cCCCEEEEEecccccc
Confidence            99999999999999999997533322 233344443   4789999999999744

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=7.7e-17  Score=116.70  Aligned_cols=152  Identities=19%  Similarity=0.212  Sum_probs=95.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCccc-----------------------------CcccCcceeeEEEEEEEECCeEE
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFI-----------------------------EFQESTIGAAFFSQTLAVNDATV   59 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   59 (200)
                      +.++|+++|+.++|||||+.+|+...-.                             .......|.+.......++....
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            4789999999999999999999641110                             00011123333333444455567


Q ss_pred             EEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH------HHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCC
Q 029029           60 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS------FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV  133 (200)
Q Consensus        60 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~  133 (200)
                      .+.++||||+..|...+...+.-+|++|+|+|..+...      +.+..+.+......  ...++++++||+|+......
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTC
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCcccc
Confidence            89999999999999999999999999999999997521      11223333333333  23458889999998643211


Q ss_pred             C--H----HHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q 029029          134 T--A----EEAQAYAQENG-----LFFMETSAKTATNVND  162 (200)
Q Consensus       134 ~--~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (200)
                      .  .    ..+..+...++     ++++++||..|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            1  1    22333333333     4689999999998854

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2.8e-16  Score=114.48  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=99.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhC--cccC---------------------------cccCcceeeEEEEEEEECCeE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKG--QFIE---------------------------FQESTIGAAFFSQTLAVNDAT   58 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   58 (200)
                      ...++|+++|+.++|||||+.+|+..  ....                           .....-|.+.......+....
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            45689999999999999999999741  1100                           000112333333333344455


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHH------HHHHHHHHHHHHHhCCCCC-eEEEEEeCcCccCCC
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS------FERAKKWVQELQAQGNPNM-VMALAGNKADLLDAR  131 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~-~~ivv~nK~D~~~~~  131 (200)
                      +++.|+|+||+..|...+..-+..+|++|+|+|..+..-      ..+..+.+......   ++ ++++++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCC
Confidence            789999999999999888888999999999999986421      01233333333333   34 488899999987643


Q ss_pred             CCCH----HHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q 029029          132 KVTA----EEAQAYAQENG-----LFFMETSAKTATNVND  162 (200)
Q Consensus       132 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (200)
                      ....    .++..+....+     ++++++|+..|.|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            2222    22344444443     4689999999988643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=1.3e-16  Score=116.76  Aligned_cols=156  Identities=19%  Similarity=0.148  Sum_probs=85.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcc--cC---------------------------cccCcceeeEEEEEEEECCeE
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQF--IE---------------------------FQESTIGAAFFSQTLAVNDAT   58 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   58 (200)
                      ...++|+++|+.++|||||+.+|+...-  ..                           ......|.+............
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            4578999999999999999999964111  00                           000011111111122222344


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHH------HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCC
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF------ERAKKWVQELQAQGNPNMVMALAGNKADLLDARK  132 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~  132 (200)
                      ..+.+.|+||+..+..........+|++++|+|..+...-      .+..+.+......+  -.++++++||+|+.....
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~--i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG--INHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT--CSSEEEEEECTTSTTCSS
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC--CCeEEEEEEcCCCCccch
Confidence            6799999999999988888888999999999999874211      12333344444432  224789999999864221


Q ss_pred             --CCHHH----HHHHHHHc-------CCcEEEecCCCCCCHHHHHH
Q 029029          133 --VTAEE----AQAYAQEN-------GLFFMETSAKTATNVNDIFY  165 (200)
Q Consensus       133 --~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~  165 (200)
                        ...++    +..+.+..       .++++++||++|+|+.++++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence              11111    22222222       24799999999999976543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=4.5e-16  Score=114.75  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccC-c-----------------ccCcceeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIE-F-----------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY   72 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   72 (200)
                      .+|+|+|+.++|||||+.+|+...... .                 .....+..........  .+.++.++||||+.+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~--~~~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc--cccceeEEccCchhhh
Confidence            369999999999999999997422110 0                 0011112222233333  3457999999999999


Q ss_pred             ccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           73 HSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      .......+.-+|++|+|+|..+.-.. .....++.....   ++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~-~t~~~~~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccc-hhHHHHHhhhhc---cccccccccccccc
Confidence            98888899999999999999875333 223334444443   68999999999964

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.3e-15  Score=117.54  Aligned_cols=159  Identities=14%  Similarity=0.125  Sum_probs=94.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHhCcccCcccCcce---eeEEEEEEEECCeEEEEEEEeCCCccccccchhh-----hh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIG---AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM-----YY   80 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~   80 (200)
                      .+++|+|+|.+|+|||||+|+|+|...........|   ++........ .....+.+|||||..........     .+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            479999999999999999999997544322221111   2222222222 22235889999996543322222     35


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCC-------CCCCHHH----HH----HHHHHc
Q 029029           81 RGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-------RKVTAEE----AQ----AYAQEN  145 (200)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~-------~~~~~~~----~~----~~~~~~  145 (200)
                      ..+|+++++.|..-.+   .-..++..+...   ++|+++|+||+|....       .....+.    ++    ...+..
T Consensus       134 ~~~d~~l~~~~~~~~~---~d~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK---NDIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCH---HHHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCH---HHHHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            5788888887754221   122344444443   6899999999996311       1112211    22    112233


Q ss_pred             CC---cEEEecCCC--CCCHHHHHHHHHHhcccc
Q 029029          146 GL---FFMETSAKT--ATNVNDIFYEIAKRLPRV  174 (200)
Q Consensus       146 ~~---~~~~~Sa~~--~~~i~~~~~~l~~~~~~~  174 (200)
                      ++   ++|.+|..+  ..++.++.+.+.+.+.+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            33   588888765  458999999998888764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.57  E-value=1e-14  Score=107.44  Aligned_cols=125  Identities=12%  Similarity=0.058  Sum_probs=75.0

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeE--EEEEEEECCeEEEEEEEeCCCccccccchh-------h
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAP-------M   78 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~   78 (200)
                      ..+++|+++|.+|+|||||+|.|++..... .++..+++.  .......+  +..+.++||||.........       .
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~-vs~~~~~T~~~~~~~~~~~--g~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCcee-ecCCCCcceeEEEEEEEec--cEEEEEEeeecccCCcchHHHHHHHHHH
Confidence            457999999999999999999999765432 222223332  23333344  35799999999543211111       1


Q ss_pred             --hhcCCcEEEEEEeCCCHH-HH--HHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHH
Q 029029           79 --YYRGAAAAIIVYDITNQA-SF--ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAE  136 (200)
Q Consensus        79 --~~~~~d~~i~v~d~~~~~-s~--~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~  136 (200)
                        .....|++++|++.+... +.  .....++..+... ....++++|+||.|.........+
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~-~~~~~~ivv~t~~D~~~~~~~~~e  168 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK-GIWNKAIVALTHAQFSPPDGLPYD  168 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch-hhhhCEEEEEECcccCCcCCCcHH
Confidence              123568889998886521 11  1122333333221 123578999999998765555543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=7.5e-15  Score=111.62  Aligned_cols=119  Identities=19%  Similarity=0.225  Sum_probs=80.2

Q ss_pred             CCccce-eEEEECCCCCCHHHHHHHHHhCccc----------------CcccCcceeeEEEEEEE--------------E
Q 029029            6 NKNINA-KLVLLGDVGAGKSSLVLRFVKGQFI----------------EFQESTIGAAFFSQTLA--------------V   54 (200)
Q Consensus         6 ~~~~~~-~i~vvG~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~   54 (200)
                      .+...+ +|+|+|+.++|||||+.+|+.....                .+.....+.........              .
T Consensus        12 ~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~   91 (341)
T d1n0ua2          12 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT   91 (341)
T ss_dssp             HCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred             cCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccc
Confidence            345566 4999999999999999999742110                00001111111111111              1


Q ss_pred             CCeEEEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCcc
Q 029029           55 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL  128 (200)
Q Consensus        55 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~  128 (200)
                      ++..+.+.++||||+.++.......++-+|++|+|+|..+.-.... ...++....   .+.|+++++||+|..
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT-~~~~~~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT-ETVLRQALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHH-HHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhH-HHHHHHHHH---cCCCeEEEEECcccc
Confidence            3457889999999999999999999999999999999998543333 233333333   368999999999974

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.45  E-value=2.4e-14  Score=104.24  Aligned_cols=109  Identities=16%  Similarity=0.062  Sum_probs=64.9

Q ss_pred             EEEEEeCCCccccccchhhh-----hcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           60 KFEIWDTAGQERYHSLAPMY-----YRGAAAAIIVYDITN---QASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        60 ~~~i~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      .+.+.|+||+..+.......     ....+.+++++|...   +..+.............  ...|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            48999999987543322221     124568889998763   43332222111111111  357899999999987532


Q ss_pred             CCCHH--------H---------------HHH---HHH--HcCCcEEEecCCCCCCHHHHHHHHHHh
Q 029029          132 KVTAE--------E---------------AQA---YAQ--ENGLFFMETSAKTATNVNDIFYEIAKR  170 (200)
Q Consensus       132 ~~~~~--------~---------------~~~---~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (200)
                      .....        .               ...   ..+  ...++++++||++|+|+++++.+|.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            11100        0               000   011  134689999999999999999998764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=5.3e-13  Score=100.99  Aligned_cols=102  Identities=15%  Similarity=0.020  Sum_probs=58.9

Q ss_pred             EEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHH
Q 029029           61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEA  138 (200)
Q Consensus        61 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~  138 (200)
                      +.+++|.|.....   ..+...+|.+++|.++...+   .++.....+...     +-++|+||+|+.......  ..+.
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd---~iq~~k~gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~  217 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGD---DLQGIKKGLMEV-----ADLIVINKDDGDNHTNVAIARHMY  217 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC---------CCCCHHHHHH-----CSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCch---hhhhhchhhhcc-----ccEEEEEeecccchHHHHHHHHHH
Confidence            6666776643222   23556799999998875543   333222333333     236788999975432111  1111


Q ss_pred             HHHHH-------HcCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          139 QAYAQ-------ENGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       139 ~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      .....       .+..+++.|||.+|.|++++++.|.+....
T Consensus       218 ~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         218 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence            22111       133479999999999999999999876543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.33  E-value=2.6e-12  Score=97.07  Aligned_cols=104  Identities=12%  Similarity=0.067  Sum_probs=64.1

Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHH
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEA  138 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  138 (200)
                      +.+.|++|.|.....   ......+|.+++|..+...+....   ....+...     +-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~---~k~gilE~-----aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQG---IKKGIFEL-----ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC---------CCTTHHHH-----CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhh---hhhhHhhh-----hheeeEeccccccchHHHHHHH
Confidence            457888888865433   234556999999999887643322   22222222     3478999999765432222211


Q ss_pred             HHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHhccc
Q 029029          139 QAYAQE----------NGLFFMETSAKTATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       139 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (200)
                      ..+...          +..+++.+||.++.|+++++++|.+....
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            122111          34579999999999999999999876554

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.17  E-value=2.9e-10  Score=84.14  Aligned_cols=83  Identities=18%  Similarity=0.061  Sum_probs=49.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQER---   71 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~---   71 (200)
                      .+||.+||.|+||||||+++|++........|..+.....-...+++.               ...+.+.|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999976543221122111100111212111               23588999999421   


Q ss_pred             ----cccchhhhhcCCcEEEEEEeC
Q 029029           72 ----YHSLAPMYYRGAAAAIIVYDI   92 (200)
Q Consensus        72 ----~~~~~~~~~~~~d~~i~v~d~   92 (200)
                          .....-..++.+|+++.|+|.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                122222346899999999975

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.3e-10  Score=86.83  Aligned_cols=122  Identities=17%  Similarity=0.180  Sum_probs=71.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcc-cCcccCcceeeEEEEEEE-----------------------------------
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLA-----------------------------------   53 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------------   53 (200)
                      ..+|+|+|..++|||||||+|++..+ +....+............                                   
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45799999999999999999998664 332222221111111000                                   


Q ss_pred             -------------EC-CeEEEEEEEeCCCcccc-------------ccchhhhhcCCc-EEEEEEeCCCHHHHHHHHHHH
Q 029029           54 -------------VN-DATVKFEIWDTAGQERY-------------HSLAPMYYRGAA-AAIIVYDITNQASFERAKKWV  105 (200)
Q Consensus        54 -------------~~-~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  105 (200)
                                   +. -....+.++|+||....             ......|+...+ ++++|.+.....+......+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                         00 00113899999995321             122344566666 455566666544444444555


Q ss_pred             HHHHHhCCCCCeEEEEEeCcCccCCCCCC
Q 029029          106 QELQAQGNPNMVMALAGNKADLLDARKVT  134 (200)
Q Consensus       106 ~~i~~~~~~~~~~ivv~nK~D~~~~~~~~  134 (200)
                      +.+..   ...++++|+||+|..+.....
T Consensus       186 ~~~~~---~~~r~i~Vltk~D~~~~~~~~  211 (299)
T d2akab1         186 KEVDP---QGQRTIGVITKLDLMDEGTDA  211 (299)
T ss_dssp             HHHCT---TCSSEEEEEECGGGSCTTCCC
T ss_pred             HHhCc---CCCceeeEEeccccccchhhH
Confidence            54433   346799999999987654433

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.11  E-value=1.3e-09  Score=81.31  Aligned_cols=87  Identities=18%  Similarity=0.093  Sum_probs=53.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcc--cCcccCcceeeEEEEEEEECC---------------eEEEEEEEeCCCc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQF--IEFQESTIGAAFFSQTLAVND---------------ATVKFEIWDTAGQ   69 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~   69 (200)
                      ....+||++||.|+||||||+++|++...  ...+ |..+.+-......+++               ....+++.|+||.
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~any-pftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGL   85 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANY-PYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   85 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC-SSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCC-CccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccc
Confidence            34578999999999999999999996533  2222 2211111111122222               1346899999984


Q ss_pred             cc----ccc---chhhhhcCCcEEEEEEeCCC
Q 029029           70 ER----YHS---LAPMYYRGAAAAIIVYDITN   94 (200)
Q Consensus        70 ~~----~~~---~~~~~~~~~d~~i~v~d~~~   94 (200)
                      -.    -..   ..-..++.+|+++.|+|..+
T Consensus        86 v~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          86 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            32    111   22234679999999998754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.95  E-value=6.6e-10  Score=83.25  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=40.9

Q ss_pred             EEEEEeCCCcccc-------------ccchhhhhcCCcEEEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCc
Q 029029           60 KFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVY-DITNQASFERAKKWVQELQAQGNPNMVMALAGNKA  125 (200)
Q Consensus        60 ~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~  125 (200)
                      .+.++|+||....             ......|+..++.+++++ +............+.+.+.   .....+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~---~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC---cCCCeEEEEEecc
Confidence            3889999995321             234555788888766655 4333222222233333332   2345799999999


Q ss_pred             CccCCC
Q 029029          126 DLLDAR  131 (200)
Q Consensus       126 D~~~~~  131 (200)
                      |.....
T Consensus       209 D~~~~~  214 (306)
T d1jwyb_         209 DLMDKG  214 (306)
T ss_dssp             TSSCSS
T ss_pred             ccccch
Confidence            986543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=8e-10  Score=83.31  Aligned_cols=83  Identities=19%  Similarity=0.096  Sum_probs=45.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccCcccC------cceeeEEEEEE----------------EECCeEEEEEEEeCCC
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQES------TIGAAFFSQTL----------------AVNDATVKFEIWDTAG   68 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G   68 (200)
                      ++|+++|.|+||||||+|+|++........|      ..|+.......                ........++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999996543211111      11222111100                0112346799999999


Q ss_pred             cccc-------ccchhhhhcCCcEEEEEEeCC
Q 029029           69 QERY-------HSLAPMYYRGAAAAIIVYDIT   93 (200)
Q Consensus        69 ~~~~-------~~~~~~~~~~~d~~i~v~d~~   93 (200)
                      .-..       ....-..++.+|++++|+|..
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            5321       111112356899999999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.82  E-value=2e-09  Score=79.34  Aligned_cols=59  Identities=27%  Similarity=0.349  Sum_probs=37.5

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCc
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ   69 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   69 (200)
                      ....++|+|+|.|+||||||+|+|.+.. ....++.+|+|.....+..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~-~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSC-CC------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccc-eEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            4567999999999999999999999544 445667778776655554433   4999999995

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.46  E-value=7.6e-07  Score=60.56  Aligned_cols=22  Identities=36%  Similarity=0.765  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +||+|+|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999985

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=5.1e-07  Score=63.79  Aligned_cols=89  Identities=16%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             hhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHH--cCCcEEEec
Q 029029           77 PMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE--NGLFFMETS  153 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~S  153 (200)
                      +....+.|.+++|+...+|+ +...+.+++-.....   +++.++|+||+|+.+...  .+....+...  .+.+++.+|
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEec
Confidence            34567899999999988764 344566666655554   789999999999975432  2223333332  346889999


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 029029          154 AKTATNVNDIFYEIAKR  170 (200)
Q Consensus       154 a~~~~~i~~~~~~l~~~  170 (200)
                      ++++.|++++..++..+
T Consensus        80 a~~~~g~~~L~~~l~~k   96 (225)
T d1u0la2          80 AKTGMGIEELKEYLKGK   96 (225)
T ss_dssp             TTTCTTHHHHHHHHSSS
T ss_pred             cccchhHhhHHHHhcCC
Confidence            99999999998877543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=1.8e-07  Score=66.19  Aligned_cols=60  Identities=22%  Similarity=0.154  Sum_probs=35.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcccC--cccCcc----eeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTI----GAAFFSQTLAVNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   73 (200)
                      -..+++|++|+|||||+|+|.+.....  ..+...    .++....-+.+++.   -.++||||...+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            467999999999999999998543211  111111    12233333444332   5788999975543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=3.4e-06  Score=59.70  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ++|.|.-|||||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            589999999999999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=4.1e-07  Score=63.76  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCcccccc----chhh---hhc-----CCcEEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCc
Q 029029           59 VKFEIWDTAGQERYHS----LAPM---YYR-----GAAAAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKA  125 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~----~~~~---~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~  125 (200)
                      +.+.++||+|......    ....   ..+     ..+-.++|+|.... +........+..+   .    +--+|+||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~---~----~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV---G----LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS---C----CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc---C----CceEEEeec
Confidence            4689999999532211    1111   122     25678889998753 3333333333322   1    234688999


Q ss_pred             CccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCH
Q 029029          126 DLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV  160 (200)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (200)
                      |...    ..-.+...+...++|+..++  .|.++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v  193 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERI  193 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCc
Confidence            9532    23446677778899877776  45444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.28  E-value=2.1e-06  Score=59.94  Aligned_cols=84  Identities=15%  Similarity=0.077  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCccccccc----hhhhh--------cCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCc
Q 029029           59 VKFEIWDTAGQERYHSL----APMYY--------RGAAAAIIVYDITN-QASFERAKKWVQELQAQGNPNMVMALAGNKA  125 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~----~~~~~--------~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~  125 (200)
                      ..+.++||+|.......    ...+.        ...+-.++|+|.+. .+........+..+.       +--+|+||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC-------CceEEEecc
Confidence            46899999995432211    11111        24577888999875 344444444444431       124588999


Q ss_pred             CccCCCCCCHHHHHHHHHHcCCcEEEec
Q 029029          126 DLLDARKVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                      |....    .-.+.......++|+..++
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~  185 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVG  185 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEE
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe
Confidence            95432    2235666777888876665

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=1.2e-06  Score=61.57  Aligned_cols=142  Identities=20%  Similarity=0.210  Sum_probs=76.2

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHhCcccCcccC----------------------cceeeEEEEEEEEC--------
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQES----------------------TIGAAFFSQTLAVN--------   55 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~----------------------~~~~~~~~~~~~~~--------   55 (200)
                      ....+.-|+++|++|+||||.+-+|... +......                      ..+..+......-+        
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~-~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~   85 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKM-FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA   85 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH-HHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence            3456778899999999999998887642 2111000                      01111110000000        


Q ss_pred             -----CeEEEEEEEeCCCccccccc----hhhh---hc-----CCcEEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCe
Q 029029           56 -----DATVKFEIWDTAGQERYHSL----APMY---YR-----GAAAAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMV  117 (200)
Q Consensus        56 -----~~~~~~~i~D~~G~~~~~~~----~~~~---~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~  117 (200)
                           ..++.+.++||+|.......    ...+   ..     ..+-.++|+|.+.. +.+..+...   .....    +
T Consensus        86 ~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~---~~~~~----~  158 (213)
T d1vmaa2          86 VAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIF---KEAVN----V  158 (213)
T ss_dssp             HHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHH---HHHSC----C
T ss_pred             HHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhh---ccccC----C
Confidence                 01345899999995332211    1111   11     24678889998753 333333332   22221    2


Q ss_pred             EEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q 029029          118 MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN  161 (200)
Q Consensus       118 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (200)
                      --+|+||.|...    ..-.+.......++|+..++  +|.+++
T Consensus       159 ~~lI~TKlDe~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~  196 (213)
T d1vmaa2         159 TGIILTKLDGTA----KGGITLAIARELGIPIKFIG--VGEKAE  196 (213)
T ss_dssp             CEEEEECGGGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             ceEEEecccCCC----cccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            346889999532    23446777778899877666  354453

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.18  E-value=1.8e-07  Score=66.38  Aligned_cols=60  Identities=18%  Similarity=0.162  Sum_probs=33.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccC--cccCcc----eeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIE--FQESTI----GAAFFSQTLAVNDATVKFEIWDTAGQERYH   73 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   73 (200)
                      .-..+++|++|+|||||+|+|++.....  ..+...    .++....-+..++    -.++||||...+.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g----g~iiDTPG~r~~~  162 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG----GLVADTPGFSSLE  162 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT----EEEESSCSCSSCC
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC----CEEEECCcccccc
Confidence            4467899999999999999998643211  111111    1222222233343    2477999986554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.15  E-value=2.3e-06  Score=59.93  Aligned_cols=91  Identities=19%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             EEEEEEeCCCcccccc------chhhh--hcCCcEEEEEEeCCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccC
Q 029029           59 VKFEIWDTAGQERYHS------LAPMY--YRGAAAAIIVYDITNQ-ASFERAKKWVQELQAQGNPNMVMALAGNKADLLD  129 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~  129 (200)
                      ..+.++||+|...+..      ....+  ....+-.++|++.+.. +..+.....+.   ..   + +--+|+||.|.. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~---~~---~-~~~lI~TKlDet-  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQ---AS---K-IGTIIITKMDGT-  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH---HC---T-TEEEEEECTTSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhc---cc---C-cceEEEecccCC-
Confidence            4699999999643321      11111  2246778888888754 23333222222   21   1 123679999943 


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q 029029          130 ARKVTAEEAQAYAQENGLFFMETSAKTATNVND  162 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (200)
                         ...-.+.......++|+..++  .|.++++
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               346667788888899977776  3555543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=1.4e-06  Score=63.67  Aligned_cols=89  Identities=15%  Similarity=0.098  Sum_probs=62.5

Q ss_pred             hhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCCHHHHHHHHHHcCCcEEEecCCC
Q 029029           77 PMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT  156 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (200)
                      ...++.+|++++|+|..+|.+...  ..+..+.    .++|.++|+||+|+.+..  ..+...++.+..+...+.+|+.+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa~~   81 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSVN   81 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeeccc
Confidence            446889999999999998755332  2222222    267999999999997643  12333444555677899999999


Q ss_pred             CCCHHHHHHHHHHhccc
Q 029029          157 ATNVNDIFYEIAKRLPR  173 (200)
Q Consensus       157 ~~~i~~~~~~l~~~~~~  173 (200)
                      +.+...+...+.+.+.+
T Consensus        82 ~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          82 GQGLNQIVPASKEILQE   98 (273)
T ss_dssp             CTTGGGHHHHHHHHHHH
T ss_pred             CCCccccchhhhhhhhh
Confidence            99998887776665543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=6.1e-07  Score=63.60  Aligned_cols=88  Identities=15%  Similarity=0.168  Sum_probs=61.4

Q ss_pred             hhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCCCCC--HHHHHHHHHHcCCcEEEec
Q 029029           77 PMYYRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVT--AEEAQAYAQENGLFFMETS  153 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~S  153 (200)
                      +....+.|.+++|+...+|+ .+..+.+++-....   .+++.++|+||+|+.++....  .+.........+.+++.+|
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeee
Confidence            34467999999999988764 34455666555443   478899999999997643211  1122333456789999999


Q ss_pred             CCCCCCHHHHHHHH
Q 029029          154 AKTATNVNDIFYEI  167 (200)
Q Consensus       154 a~~~~~i~~~~~~l  167 (200)
                      ++++.|++++..+|
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999998876554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.04  E-value=8.3e-06  Score=56.92  Aligned_cols=84  Identities=18%  Similarity=0.164  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCccccccc----hhhh--hcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEeCcCccCCC
Q 029029           59 VKFEIWDTAGQERYHSL----APMY--YRGAAAAIIVYDITNQA-SFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR  131 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ivv~nK~D~~~~~  131 (200)
                      ..+.++||+|.......    +..+  ....+-.++|.|....+ ..+....+++.+   .    +--+|+||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~---~----~~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV---G----VTGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT---C----CCEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC---C----CCeeEEeecCccc--
Confidence            46899999995432221    1111  23578889999987653 232222222222   1    1236889999432  


Q ss_pred             CCCHHHHHHHHHHcCCcEEEec
Q 029029          132 KVTAEEAQAYAQENGLFFMETS  153 (200)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (200)
                        ..-.+...+...+.|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              34456777788888876664

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.91  E-value=3.4e-06  Score=56.87  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=23.2

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++.++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=4.4e-06  Score=56.75  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999974

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=7.4e-06  Score=54.87  Aligned_cols=20  Identities=25%  Similarity=0.503  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|+|++|||||||+++|..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            79999999999999999984

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.75  E-value=7.1e-06  Score=55.08  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.+|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.67  E-value=1.4e-05  Score=54.87  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +.+||+|+|+|||||||+...|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            56899999999999999999886

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.67  E-value=1.7e-05  Score=54.53  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=23.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.+-++|+|+|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999998874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.67  E-value=1.5e-05  Score=54.81  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHHh
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +..++..|+|+|++||||||+.+.|..
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345567889999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.65  E-value=1.4e-05  Score=52.59  Aligned_cols=20  Identities=30%  Similarity=0.604  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |++.|++|||||||++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=1.4e-05  Score=54.21  Aligned_cols=21  Identities=43%  Similarity=0.613  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +||+|+|+|||||||+.+.|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.60  E-value=1.8e-05  Score=53.84  Aligned_cols=22  Identities=41%  Similarity=0.598  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988873

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.59  E-value=1.5e-05  Score=54.59  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=21.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+++|+|.|++||||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999988863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=2.2e-05  Score=53.40  Aligned_cols=23  Identities=30%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|+|++||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998863

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=2.4e-05  Score=53.16  Aligned_cols=22  Identities=32%  Similarity=0.678  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998863

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=2.3e-05  Score=52.46  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.5

Q ss_pred             eE-EEECCCCCCHHHHHHHHHh
Q 029029           12 KL-VLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i-~vvG~~~sGKSsli~~l~~   32 (200)
                      || .|+|.+|||||||+++|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 5999999999999999974

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.54  E-value=3.1e-05  Score=52.03  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=21.7

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHH
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...+-+-|.++|.+||||||+.+.|.
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34556789999999999999988876

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=5e-05  Score=55.30  Aligned_cols=61  Identities=18%  Similarity=0.119  Sum_probs=39.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcccCc-----ccCcceeeEEEEEEEECCeEEEEEEEeCCCccc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQFIEF-----QESTIGAAFFSQTLAVNDATVKFEIWDTAGQER   71 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   71 (200)
                      -.=|.|+|+.++|||+|+|.|++....-.     ...+.|+-.....+ ..+....+.++||.|...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            44678999999999999999996543211     12333432222222 234566799999999643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.4e-05  Score=53.10  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +||+|+|++||||||+.+.|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998885

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.2e-05  Score=54.87  Aligned_cols=20  Identities=35%  Similarity=0.640  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|+||+|+||+||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999984

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.52  E-value=2.5e-05  Score=52.16  Aligned_cols=20  Identities=30%  Similarity=0.564  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|.|++||||||+++.|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999873

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.1e-05  Score=51.16  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.4e-05  Score=54.97  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =+|+|+|++|||||||++.|.+
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999884

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=6.2e-05  Score=50.80  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHH
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ..+.=|+++|.+||||||++..+.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999986

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=4.4e-05  Score=52.83  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999873

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=4.3e-05  Score=51.08  Aligned_cols=21  Identities=43%  Similarity=0.597  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .||+++|++||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            379999999999999988775

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.38  E-value=4.3e-05  Score=52.95  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            478999999999999999984

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.8e-05  Score=51.70  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++.|+|+|++||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988863

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.36  E-value=4.9e-05  Score=54.20  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =.++|+|++|||||||++.|.+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=5.4e-05  Score=53.51  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|||||||++.+.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            479999999999999998875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.8e-05  Score=50.83  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.7e-05  Score=51.61  Aligned_cols=20  Identities=35%  Similarity=0.677  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|+||+|||||||++.|..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            79999999999999999974

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.34  E-value=4.7e-05  Score=54.68  Aligned_cols=21  Identities=29%  Similarity=0.582  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +++|+|++|||||||++.|.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999998874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=5.3e-05  Score=54.32  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =.++|+|++|||||||++.+.+
T Consensus        41 e~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            3689999999999999999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.33  E-value=5.4e-05  Score=51.47  Aligned_cols=20  Identities=35%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|+||+|||||||++.|..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999974

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.33  E-value=5.8e-05  Score=50.30  Aligned_cols=20  Identities=35%  Similarity=0.669  Sum_probs=18.1

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      +|+++|++||||||+...|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            68999999999999988875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=5.4e-05  Score=53.44  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            479999999999999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.30  E-value=6.8e-05  Score=53.16  Aligned_cols=21  Identities=43%  Similarity=0.517  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|||||||++.+.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            457999999999999999985

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.30  E-value=6.9e-05  Score=53.16  Aligned_cols=21  Identities=38%  Similarity=0.532  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|||||||++.+.+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            479999999999999999885

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.29  E-value=6.6e-05  Score=50.68  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=17.7

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      -|+|.|++||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999999885

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=6.6e-05  Score=54.73  Aligned_cols=21  Identities=33%  Similarity=0.645  Sum_probs=19.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|+|++|||||||++.+++
T Consensus        64 ~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            589999999999999999985

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=7.1e-05  Score=49.94  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=18.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =++|+|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=9.9e-05  Score=50.31  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=22.0

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...++=|+|.|++|||||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999863

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.24  E-value=0.00011  Score=52.69  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+.-|++.|+||+|||||++.|..
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3345699999999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=9.7e-05  Score=50.61  Aligned_cols=20  Identities=45%  Similarity=0.742  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|+||+|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.21  E-value=9.6e-05  Score=52.47  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        31 ~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            479999999999999999885

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.20  E-value=8.4e-05  Score=49.72  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998863

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.19  E-value=0.0001  Score=49.26  Aligned_cols=20  Identities=35%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56669999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.19  E-value=9e-05  Score=52.73  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|+|||||++.+.+
T Consensus        34 i~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            368999999999999999985

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.18  E-value=6.3e-05  Score=53.01  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|||||||++.+.+
T Consensus        28 ~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            379999999999999999985

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=8.2e-05  Score=52.82  Aligned_cols=21  Identities=33%  Similarity=0.406  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            469999999999999999874

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=7.5e-05  Score=52.87  Aligned_cols=21  Identities=48%  Similarity=0.664  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++++|++|||||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            368999999999999999985

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00011  Score=50.99  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      |+|+||+|||||||++.|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            688999999999999999853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.16  E-value=0.00016  Score=53.72  Aligned_cols=23  Identities=17%  Similarity=0.549  Sum_probs=20.7

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+|+|.|++|||||||++.|+.
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCCEEEEeeccccchHHHHHHhh
Confidence            35799999999999999999984

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00013  Score=51.89  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++++|++|+|||||++.+.+-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999853

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00012  Score=50.20  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      --|+|+|++||||||+...|..
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=8.2e-05  Score=50.71  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.0

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +.+.|.++|++||||||+.+.|.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45678899999999999999886

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.12  E-value=6.3e-05  Score=54.03  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =+++|+|++|||||||++.+.+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            3789999999999999998774

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=0.00014  Score=49.72  Aligned_cols=28  Identities=18%  Similarity=0.411  Sum_probs=24.8

Q ss_pred             CCCCccceeEEEECCCCCCHHHHHHHHH
Q 029029            4 TGNKNINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         4 ~~~~~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ..+..+++-|+|-|..||||||+++.|.
T Consensus         3 ~~~~~kp~~I~ieG~~GsGKTTl~~~L~   30 (197)
T d2vp4a1           3 YAEGTQPFTVLIEGNIGSGKTTYLNHFE   30 (197)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHH
Confidence            4566778899999999999999999886

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.08  E-value=0.00015  Score=48.51  Aligned_cols=20  Identities=15%  Similarity=0.423  Sum_probs=17.7

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37899999999999988875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.07  E-value=0.00014  Score=52.21  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 029029           13 LVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~~   33 (200)
                      ++++|++|||||||++.+.+-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999999853

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.06  E-value=0.00014  Score=52.17  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|+|++|||||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            479999999999999999974

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.04  E-value=0.00016  Score=49.54  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00022  Score=50.38  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.+++.||||+||||+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.01  E-value=0.0002  Score=49.88  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.++|+|-||+||||||+...|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999888863

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.00  E-value=0.00028  Score=50.28  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..+...|++.|++|+|||+|++.+..
T Consensus        37 ~~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          37 RTPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHhh
Confidence            34456799999999999999999874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.99  E-value=8.9e-05  Score=52.64  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            579999999999999999985

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00025  Score=49.20  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ++-|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5779999999999999999885

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.98  E-value=0.00018  Score=48.61  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=17.0

Q ss_pred             eEE-EECCCCCCHHHHHHHHH
Q 029029           12 KLV-LLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~-vvG~~~sGKSsli~~l~   31 (200)
                      ||+ |.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            554 57999999999999885

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00022  Score=50.35  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.+++.||||+||||+++.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3689999999999999998874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00042  Score=47.40  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=20.2

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-+++++|++|+|||++++.|..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            45789999999999999988874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.74  E-value=0.0013  Score=43.27  Aligned_cols=25  Identities=36%  Similarity=0.594  Sum_probs=20.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      ..-|++.|+-|||||||++.++.+-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3458899999999999999988643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.72  E-value=0.00046  Score=48.38  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+++.|++|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00054  Score=49.32  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..-++++||++|+|||++++.|..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345899999999999999998874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.00052  Score=50.56  Aligned_cols=24  Identities=25%  Similarity=0.610  Sum_probs=20.9

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.-.++++||||+|||.|.+++..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            346799999999999999999874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00053  Score=48.63  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.+++.||+|+||||+++.+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999984

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.66  E-value=0.00065  Score=47.07  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHH
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .++..-|.|.|.+|||||||.+.|.
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4566779999999999999999886

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.58  E-value=0.00081  Score=47.85  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=20.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ..-.++|.|++|+|||++++.+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00063  Score=47.12  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=17.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =|+|.||+||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367779999999999888863

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.56  E-value=0.00058  Score=48.74  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -|+|.|++|+|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00072  Score=45.89  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++=|+|.|.+||||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467789999999999999998754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00072  Score=48.13  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.|++.|++|+|||+|++.+..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4599999999999999999984

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.53  E-value=0.00063  Score=52.61  Aligned_cols=23  Identities=26%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +-+|+++||+|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            44899999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00081  Score=46.16  Aligned_cols=20  Identities=35%  Similarity=0.501  Sum_probs=18.3

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      -|+|-|..||||||+++.|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999886

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00097  Score=47.72  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +-.|++.||+|+|||+|++.+..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            45699999999999999999885

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00086  Score=46.95  Aligned_cols=21  Identities=33%  Similarity=0.673  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++|.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            489999999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00091  Score=46.60  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999988763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.42  E-value=0.00062  Score=48.77  Aligned_cols=20  Identities=40%  Similarity=0.483  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      +++.|++|+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            45569999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0012  Score=48.52  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=21.8

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHH
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ....++=|+|.|++||||||+.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34568899999999999999988774

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0012  Score=47.29  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +-.+++.||+|+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            44699999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00078  Score=47.63  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=19.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0011  Score=46.12  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+++.|++|+||||+++.+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            489999999999999999874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0015  Score=46.85  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...|++.|++|+|||+|++.+.+
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHH
Confidence            45699999999999999999974

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0013  Score=45.27  Aligned_cols=19  Identities=37%  Similarity=0.422  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 029029           13 LVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~   31 (200)
                      |+|-|..||||||+++.|.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999999876

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.14  E-value=0.085  Score=37.12  Aligned_cols=88  Identities=16%  Similarity=0.182  Sum_probs=50.8

Q ss_pred             EEEEEEeCCCccccccc-hhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCe-EEEEEeCcCccCCCCCCH
Q 029029           59 VKFEIWDTAGQERYHSL-APMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMV-MALAGNKADLLDARKVTA  135 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~-~ivv~nK~D~~~~~~~~~  135 (200)
                      +.+.++|+|+.-..... .......+|.++++... +..++......+..+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            45899999875432222 22233457888877766 45566655555555554332 2333 347789987543    24


Q ss_pred             HHHHHHHHHcCCcEEE
Q 029029          136 EEAQAYAQENGLFFME  151 (200)
Q Consensus       136 ~~~~~~~~~~~~~~~~  151 (200)
                      +..+.+.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            4566667777776543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0027  Score=45.93  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=21.3

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHH
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .+..++=|+|.|.+|||||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34457889999999999999887664

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.00032  Score=47.76  Aligned_cols=20  Identities=45%  Similarity=0.610  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+|+|+.|||||||+.+|..
T Consensus        27 tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999853

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.95  E-value=0.0029  Score=42.36  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCcc
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVKGQF   35 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~~~~   35 (200)
                      .-|++.|++|+||||+.-.|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999988886543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0021  Score=44.42  Aligned_cols=19  Identities=42%  Similarity=0.464  Sum_probs=16.5

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 029029           13 LVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~   31 (200)
                      |+|-|..||||||+++.|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999888775

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.88  E-value=0.0025  Score=47.86  Aligned_cols=23  Identities=22%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +.-+++++||+|||||-|.++|.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHH
Confidence            46679999999999999999885

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0027  Score=43.35  Aligned_cols=23  Identities=13%  Similarity=0.257  Sum_probs=19.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCc
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKGQ   34 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~~   34 (200)
                      =++|.|++|+|||+|...+....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999998887543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.85  E-value=0.0013  Score=47.88  Aligned_cols=19  Identities=26%  Similarity=0.459  Sum_probs=17.0

Q ss_pred             EEECCCCCCHHHHHHHHHh
Q 029029           14 VLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        14 ~vvG~~~sGKSsli~~l~~   32 (200)
                      +++|+.||||||+++++..
T Consensus        28 vlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            7999999999999998843

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0013  Score=46.08  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      -.|+|-|+.||||||+++.|.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~   23 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILK   23 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTG
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.002  Score=48.86  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=18.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .-++++||++|+|||++++.|.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHH
Confidence            4467999999999999987665

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.80  E-value=0.0026  Score=48.41  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -=|+|.|++||||||+++.++.
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhh
Confidence            4489999999999999999985

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.77  E-value=0.0032  Score=42.19  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=21.3

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQF   35 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~   35 (200)
                      ..-|+|.|++|+||||+.-.|....+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            34589999999999999988885443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.74  E-value=0.0038  Score=46.82  Aligned_cols=24  Identities=17%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.-.+++.||||+|||+|.+.+.+
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            344799999999999999998874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0032  Score=43.30  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +=|+|.|..||||||+.+.|-.
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            3478999999999999988754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.66  E-value=0.0033  Score=43.14  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      +=|+|.|..||||||+.+.|-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999998775

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0041  Score=43.48  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.-|+|-|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34689999999999999999873

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.49  E-value=0.0017  Score=48.03  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -.|+++|++|+|||+|++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3699999999999999998863

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.0036  Score=47.34  Aligned_cols=19  Identities=26%  Similarity=0.482  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 029029           13 LVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~   31 (200)
                      .+|+|+.|||||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3688999999999999974

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.0034  Score=43.74  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++|.|++|+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999888743

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.46  E-value=0.0051  Score=40.87  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=21.4

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhCcc
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKGQF   35 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~~~   35 (200)
                      ..-|++.|++|+||||+.-.|....+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            35689999999999999888876544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0065  Score=44.60  Aligned_cols=23  Identities=22%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHh
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-.++++||+|+|||.|...|..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHh
Confidence            33689999999999999998763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.0044  Score=42.85  Aligned_cols=20  Identities=15%  Similarity=0.144  Sum_probs=18.0

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      =|+|-|..||||||+++.|.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999998875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.29  E-value=0.0034  Score=46.44  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             CccceeEEEECCCCCCHHHHHHHHHh
Q 029029            7 KNINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         7 ~~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      +..-++|.|=|+-|+||||+++.|..
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.24  E-value=0.0051  Score=43.12  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++|.|++|+|||+|.-.++..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999998887643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.22  E-value=0.0059  Score=43.91  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .-|+|+|..|+|||||+..+..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999998874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.22  E-value=0.0021  Score=46.61  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=15.0

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      =|+|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            49999999999999998764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.21  E-value=0.0062  Score=45.05  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=21.2

Q ss_pred             cceeEEEECCCCCCHHHHHHHHH
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      .-++|.|=|+-|+||||+++.|.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~   27 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMA   27 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCccCCHHHHHHHHH
Confidence            46899999999999999999887

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.20  E-value=0.0063  Score=42.03  Aligned_cols=20  Identities=30%  Similarity=0.556  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.+.|++|+|||.|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999975

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.08  E-value=0.0062  Score=42.49  Aligned_cols=24  Identities=38%  Similarity=0.667  Sum_probs=19.9

Q ss_pred             ceeEEEECCCCCCHHHHHHHHHhC
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      .--++|.|++|+|||+|+..+...
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            335789999999999999888754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.03  E-value=0.0065  Score=44.81  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=20.0

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      -++|.|-|+-|+||||+++.|.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHT
T ss_pred             ceEEEEECCcCCCHHHHHHHHH
Confidence            4679999999999999999885

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.0083  Score=41.15  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999997764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.86  E-value=0.0082  Score=44.08  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      +++.|+||+|||.|.+.|.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.0088  Score=41.88  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=18.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999988753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0095  Score=41.60  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -++|.|++|+|||+|...++.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999988875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.70  E-value=0.0088  Score=41.55  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q 029029           12 KLVLLGDVGAGKSSLVLRFVKG   33 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~~   33 (200)
                      -++|.|++|+|||+|...+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999998888753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.62  E-value=0.01  Score=40.38  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=21.4

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .+.-.+++.||+++|||.|++.|+.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4556789999999999999998874

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.45  E-value=0.015  Score=36.13  Aligned_cols=26  Identities=12%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CCccceeEEEECCCCCCHHHHHHHHH
Q 029029            6 NKNINAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus         6 ~~~~~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ...+-+.|.+-|..|+|||+|.+.|.
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHH
Confidence            34567899999999999999999987

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.27  E-value=0.013  Score=40.40  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q 029029           11 AKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~   31 (200)
                      --++|.|++|+|||+|...++
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            346889999999999987665

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.23  E-value=0.014  Score=41.51  Aligned_cols=20  Identities=25%  Similarity=0.400  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999887763

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.22  E-value=0.015  Score=42.66  Aligned_cols=21  Identities=29%  Similarity=0.596  Sum_probs=18.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            678889999999999887753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.18  E-value=0.015  Score=40.57  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=18.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998853

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.015  Score=44.13  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...-.++|+|.+|+|||+++..++.
T Consensus        48 ~~~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          48 AEPRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cccceEEEEeCCCCcHHHHHHHHHH
Confidence            3345699999999999999887764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.65  E-value=0.014  Score=42.05  Aligned_cols=18  Identities=22%  Similarity=0.492  Sum_probs=14.4

Q ss_pred             eEEEECCCCCCHHHH-HHH
Q 029029           12 KLVLLGDVGAGKSSL-VLR   29 (200)
Q Consensus        12 ~i~vvG~~~sGKSsl-i~~   29 (200)
                      .++|+|.+|+||||. +++
T Consensus        16 ~~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHH
Confidence            368999999999975 444

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.44  E-value=0.016  Score=41.99  Aligned_cols=18  Identities=28%  Similarity=0.647  Sum_probs=14.6

Q ss_pred             eEEEECCCCCCHHHH-HHH
Q 029029           12 KLVLLGDVGAGKSSL-VLR   29 (200)
Q Consensus        12 ~i~vvG~~~sGKSsl-i~~   29 (200)
                      .++|.|.+||||||. +++
T Consensus        26 ~~lV~g~aGSGKTt~l~~r   44 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHR   44 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHH
Confidence            488999999999975 444

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.022  Score=40.36  Aligned_cols=19  Identities=42%  Similarity=0.513  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 029029           13 LVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~   31 (200)
                      ++|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5799999999999987765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.39  E-value=0.039  Score=39.31  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=21.5

Q ss_pred             ccceeEEEECCCCCCHHHHHHHHHh
Q 029029            8 NINAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         8 ~~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ...-.+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            5566789999999999999999874

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.03  Score=40.26  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =|++|+|++|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            3789999999999999988874

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.035  Score=41.33  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=15.9

Q ss_pred             eEEEECCCCCCHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRF   30 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l   30 (200)
                      -++|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4688999999999987554

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.067  Score=37.90  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=17.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =+.|.|++++|||+|+-.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            358999999999999877764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.067  Score=37.21  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            68999999999999998643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.86  E-value=0.075  Score=37.23  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             ceeEEEECCCCCCHHHHHHHHH
Q 029029           10 NAKLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        10 ~~~i~vvG~~~sGKSsli~~l~   31 (200)
                      ..-|+|.|++|+||+.+.+.+-
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHH
Confidence            3458999999999999988774

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.82  E-value=0.079  Score=36.58  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      ++|.|+..+||||+++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999998643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.13  E-value=0.099  Score=37.24  Aligned_cols=21  Identities=33%  Similarity=0.773  Sum_probs=18.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            689999999999999888764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.076  Score=38.46  Aligned_cols=14  Identities=43%  Similarity=0.762  Sum_probs=12.9

Q ss_pred             EEECCCCCCHHHHH
Q 029029           14 VLLGDVGAGKSSLV   27 (200)
Q Consensus        14 ~vvG~~~sGKSsli   27 (200)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999984

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.47  E-value=0.074  Score=33.26  Aligned_cols=20  Identities=30%  Similarity=0.222  Sum_probs=16.0

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      ..+|.+++|+|||+++-.++
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35789999999999876554

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.32  E-value=0.12  Score=32.77  Aligned_cols=18  Identities=33%  Similarity=0.525  Sum_probs=14.6

Q ss_pred             EEECCCCCCHHH-HHHHHH
Q 029029           14 VLLGDVGAGKSS-LVLRFV   31 (200)
Q Consensus        14 ~vvG~~~sGKSs-li~~l~   31 (200)
                      +++||-.||||| |++++-
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            678999999999 666653

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.28  E-value=0.75  Score=29.29  Aligned_cols=50  Identities=14%  Similarity=0.197  Sum_probs=28.3

Q ss_pred             hhhhcCCcEEEEEEeCCC-----HH-HH----HHHHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           77 PMYYRGAAAAIIVYDITN-----QA-SF----ERAKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~-----~~-s~----~~~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                      ...++++|++|+......     +. .+    ..++.+.+.+.++..++..++++.|-.|
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            345789999999876542     11 11    1123444555555434555666677766

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.89  E-value=1.8  Score=28.88  Aligned_cols=76  Identities=14%  Similarity=0.097  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCccccccchhhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEeCcCccCCCCCCHHH
Q 029029           59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKVTAEE  137 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i-vv~nK~D~~~~~~~~~~~  137 (200)
                      +.+.++|+++...  ......+..+|.++++...+ ..+.....+.+..+.+.   +.|++ +|+|+.+..+. ......
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~~-~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDR-DIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTT-CCCHHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhcccccccc-hhhhHH
Confidence            4599999987643  23344567899999998864 44555655666555543   45654 78999986543 344444


Q ss_pred             HHHH
Q 029029          138 AQAY  141 (200)
Q Consensus       138 ~~~~  141 (200)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4333

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.71  E-value=0.096  Score=38.07  Aligned_cols=15  Identities=40%  Similarity=0.682  Sum_probs=13.5

Q ss_pred             EEEECCCCCCHHHHH
Q 029029           13 LVLLGDVGAGKSSLV   27 (200)
Q Consensus        13 i~vvG~~~sGKSsli   27 (200)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            479999999999995

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.70  E-value=0.084  Score=38.34  Aligned_cols=15  Identities=40%  Similarity=0.685  Sum_probs=13.4

Q ss_pred             EEEECCCCCCHHHHH
Q 029029           13 LVLLGDVGAGKSSLV   27 (200)
Q Consensus        13 i~vvG~~~sGKSsli   27 (200)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999984

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.94  E-value=0.22  Score=35.29  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=17.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q 029029           12 KLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =+.|.|++++|||+|+-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            357999999999999877663

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.72  E-value=0.2  Score=35.40  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      +.+.|++++|||+|+..+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            57899999999999888774

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.31  E-value=0.18  Score=36.06  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q 029029           11 AKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        11 ~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      =|++++|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            3789999999999999877664

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.81  E-value=0.23  Score=32.86  Aligned_cols=20  Identities=20%  Similarity=0.378  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 029029           13 LVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l~~   32 (200)
                      |+|+|...||||.+...+..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            68999999999999999873

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.60  E-value=0.29  Score=32.79  Aligned_cols=24  Identities=8%  Similarity=0.092  Sum_probs=20.7

Q ss_pred             cceeEEEECCCCCCHHHHHHHHHh
Q 029029            9 INAKLVLLGDVGAGKSSLVLRFVK   32 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsli~~l~~   32 (200)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999888764

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.59  E-value=0.3  Score=32.34  Aligned_cols=15  Identities=20%  Similarity=0.401  Sum_probs=13.2

Q ss_pred             eEEEECCCCCCHHHH
Q 029029           12 KLVLLGDVGAGKSSL   26 (200)
Q Consensus        12 ~i~vvG~~~sGKSsl   26 (200)
                      ++++++++|+|||.+
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999964

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.90  E-value=0.33  Score=34.31  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             EEEEEEeCCCccccccchhhh-hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeE-EEEEeCcCccCCCCCCH
Q 029029           59 VKFEIWDTAGQERYHSLAPMY-YRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVM-ALAGNKADLLDARKVTA  135 (200)
Q Consensus        59 ~~~~i~D~~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~-ivv~nK~D~~~~~~~~~  135 (200)
                      +.+.++|+|+.-......... ...++.++++... +..+...+...++.+... ...+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            458899998754322222222 2356666666543 444555555555544432 2234444 37889876322    23


Q ss_pred             HHHHHHHHHcCCcEEEec---------CCC---------CCCHHHHHHHHHHhccccCCCCCC
Q 029029          136 EEAQAYAQENGLFFMETS---------AKT---------ATNVNDIFYEIAKRLPRVQPAPNP  180 (200)
Q Consensus       136 ~~~~~~~~~~~~~~~~~S---------a~~---------~~~i~~~~~~l~~~~~~~~~~~~~  180 (200)
                      +....+.+..+.+++.+-         ...         +......|..|++.+.+....-.|
T Consensus       194 ~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~~~p  256 (289)
T d2afhe1         194 ELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLVIP  256 (289)
T ss_dssp             HHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCCBCC
T ss_pred             HHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCCCCC
Confidence            345556666676655331         111         223334567777777665443333

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.83  E-value=0.35  Score=33.87  Aligned_cols=18  Identities=28%  Similarity=0.678  Sum_probs=13.8

Q ss_pred             EEEECCCCCCHHHHHHHH
Q 029029           13 LVLLGDVGAGKSSLVLRF   30 (200)
Q Consensus        13 i~vvG~~~sGKSsli~~l   30 (200)
                      |++.|.-|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            455599999999975544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=0.37  Score=33.96  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=23.9

Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEeCcC
Q 029029           85 AAIIVYDITNQASFERAKKWVQELQAQGNPNMVM-ALAGNKAD  126 (200)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-ivv~nK~D  126 (200)
                      .+++|... ++.+.....+.+..+...+   +|+ -+|+|+.-
T Consensus       200 ~~~lVt~p-e~~~~~~~~r~~~~l~~~g---i~~~~vVvN~v~  238 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEVARTHLELAAIG---LKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEES-CHHHHHHHHHHHHHHHHHT---CCCEEEEEEEEC
T ss_pred             eeeEecCc-chhHHHHHHHHHHHHHhcC---CCceEEEEcCCc
Confidence            45666544 4456677777777777763   333 56779963

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.21  E-value=0.27  Score=34.93  Aligned_cols=20  Identities=20%  Similarity=0.498  Sum_probs=17.3

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRFV   31 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l~   31 (200)
                      |++|+|.+|+|||+|+..+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHH
Confidence            68899999999999987654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=82.55  E-value=4.5  Score=26.13  Aligned_cols=101  Identities=10%  Similarity=0.116  Sum_probs=55.5

Q ss_pred             ccceeEEEECC-CCCCHHHHHHHHHhCcccCcccCcceeeEEEEEEEECCeEEEEEEEeCCCccc---------------
Q 029029            8 NINAKLVLLGD-VGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------------   71 (200)
Q Consensus         8 ~~~~~i~vvG~-~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------   71 (200)
                      .+.+||.|+|. .+.|=+ |+..|..+.....                 .....+.++|.+....               
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhcccccc
Confidence            46889999997 667755 4455654443221                 1233466667665211               


Q ss_pred             ------cccchhhhhcCCcEEEEEEeCCCH--HHHHH--------HHHHHHHHHHhCCCCCeEEEEEeCcC
Q 029029           72 ------YHSLAPMYYRGAAAAIIVYDITNQ--ASFER--------AKKWVQELQAQGNPNMVMALAGNKAD  126 (200)
Q Consensus        72 ------~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~--------~~~~~~~i~~~~~~~~~~ivv~nK~D  126 (200)
                            ........+.++|++|++......  ++-..        ...+.+.+..+..++..++++.|-.|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                  011122347789999998765421  11111        12334445555444666777778776

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=82.11  E-value=0.25  Score=30.34  Aligned_cols=18  Identities=33%  Similarity=0.207  Sum_probs=14.1

Q ss_pred             cceeEEEECCCCCCHHHH
Q 029029            9 INAKLVLLGDVGAGKSSL   26 (200)
Q Consensus         9 ~~~~i~vvG~~~sGKSsl   26 (200)
                      +.-++++.+++|+|||..
T Consensus         6 ~~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TTCEEEECCCTTSSTTTT
T ss_pred             cCCcEEEEcCCCCChhHH
Confidence            345678889999999943

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.06  E-value=6  Score=27.35  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=15.5

Q ss_pred             eEEEECCCCCCHHHHHHHH
Q 029029           12 KLVLLGDVGAGKSSLVLRF   30 (200)
Q Consensus        12 ~i~vvG~~~sGKSsli~~l   30 (200)
                      +|+|-|.-|+||||+.-.|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5788899999999975554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=81.78  E-value=0.45  Score=31.69  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=16.4

Q ss_pred             eeEEEECCC-CCCHHHHHHHHH
Q 029029           11 AKLVLLGDV-GAGKSSLVLRFV   31 (200)
Q Consensus        11 ~~i~vvG~~-~sGKSsli~~l~   31 (200)
                      -|+.|.|-. |+||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            478899995 999999755554

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.17  E-value=0.91  Score=28.87  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=17.8

Q ss_pred             cceeEEEECC-CCCCHHHHHHHHHhCc
Q 029029            9 INAKLVLLGD-VGAGKSSLVLRFVKGQ   34 (200)
Q Consensus         9 ~~~~i~vvG~-~~sGKSsli~~l~~~~   34 (200)
                      .++||.|+|. .++|.+... .|..+.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHH
Confidence            4789999996 788887554 455333