Citrus Sinensis ID: 029089

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVLQF
Secondary Structure (PSIPRED)
ccHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccHHHHHHHHHHHHHHHHHEccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEcc
Coil and Loop (DISEMBL)
mmgvamgmmlrsppLVICFIIWWIVGAaysldlpllrwkgsplMAAVTIIILNGLLLQFPYFVHFQkyvlgrpvvfpkqLLFAAAIMPIFNAAIAfskdlpdvegdkefglrtlpiilgrERVFSIAVNMLLTAYGagvvagatspflpcKIVAIIGHSALAALLWRKaqtvdltdppsmqsFYMFIFKASgstlvlqf
Flexible Loop (DISEMBL)
MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVLQF
Low Complexity Region (SEG)
MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYgagvvagaTSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVLQF
Disordered region (IsUnstruct)
********MLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTL****
Disordered Region (DISOPRED)
MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVLQF
Disordered Region (DISEMBL)
MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVLQF
Disordered Region (DISPRO)
MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVLQF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVLQF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.949	0.480	0.417	3e-42
B7FA90	404	Probable homogentisate ph	no	no	0.944	0.465	0.420	7e-41
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.949	0.460	0.423	1e-39
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.919	0.447	0.409	1e-36
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.562	0.290	0.339	1e-08
Q0D576	379	Probable homogentisate ph	no	no	0.804	0.422	0.278	2e-07
C5A1J7	276	Digeranylgeranylglyceryl	yes	no	0.316	0.228	0.394	0.0009

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  171 bits (433), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 127/189 (67%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           +M   +G ++ S PL     + +++G AYS++LPLLRWK   L+AA+ I+ +  +++Q  
Sbjct: 192 IMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIA 251

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
           +++H Q +V GRP++F + L+FA A M  F+  IA  KD+PD+EGDK FG+R+  + LG+
Sbjct: 252 FYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQ 311

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
           +RVF   V +L  AY   ++ GATSPF+  K+++++GH  LA  LW +A++VDL+    +
Sbjct: 312 KRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEI 371

Query: 181 QSFYMFIFK 189
            S YMFI+K
Sbjct: 372 TSCYMFIWK 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  166 bits (421), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 125/188 (66%)

Query: 2   MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPY 61
           M   +G  + S PL +   I +I+G AYS++LP LRWK S ++AA+ I+ +  +++Q  +
Sbjct: 204 MSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAF 263

Query: 62  FVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRE 121
           F+H Q +V  RP VF + L+FA A M  F+  IA  KD+PD+EGD+ FG+++  + LG++
Sbjct: 264 FLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQK 323

Query: 122 RVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQ 181
           +VF I V +L  AY   ++ GATS  L  K   ++GH+ LAA+LW +++++DLT   ++ 
Sbjct: 324 KVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAIT 383

Query: 182 SFYMFIFK 189
           SFYMFI+K
Sbjct: 384 SFYMFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/189 (42%), Positives = 122/189 (64%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           ++G+    ++ S PL     I  +V +AY++DLPLLRWK  P++ A+  I    +     
Sbjct: 209 ILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLG 268

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
           +F+H Q  V  RP  FP+ L+F  AI+ I+   IA  KD+PD+EGD++FG+++L + LG 
Sbjct: 269 FFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGP 328

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
           +RVF I V++L   YG  ++ GATSP L  KI+ ++GH+ LA++LW  A++VDLT    +
Sbjct: 329 KRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVL 388

Query: 181 QSFYMFIFK 189
            SFYMFI+K
Sbjct: 389 HSFYMFIWK 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 15/198 (7%)

Query: 7   GMMLRSPPLVICFIIWWIVGA---------------AYSLDLPLLRWKGSPLMAAVTIII 51
           G+++ +  L + F   WI G+               AYS+D+PLLRWK  P +AA+ +I 
Sbjct: 199 GVIISAAFLALSFGFTWITGSWPLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMIS 258

Query: 52  LNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGL 111
              L L   YF H Q  VL RP+ FP+ L F  A M  ++  +A SKD+PDVEGDKE G+
Sbjct: 259 TWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGI 318

Query: 112 RTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQT 171
            +  + LG++R F I V+    A+G G++AGA+      KI   +G++ LA++LW +A++
Sbjct: 319 DSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKS 378

Query: 172 VDLTDPPSMQSFYMFIFK 189
           VDL+D  S  SFYMFI+K
Sbjct: 379 VDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 25  VGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAA 84
           +G  YS+  P LR K  P+ A + I  + G LL F  + H  +  LG P  +   + F  
Sbjct: 211 LGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFIT 267

Query: 85  AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV 139
           + + +F   IA +KDLPDVEGD++F + TL   LG   +  +   +LL  Y + +
Sbjct: 268 SFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAI 322

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 25  VGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAA 84
           +G  YS+  P  R K  P+ A + I  + G LL F  + +  +  LG    +   + F  
Sbjct: 204 LGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPVAFIT 260

Query: 85  AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGAT 144
             + +F   IA +KDLPDVEGD+++ + TL   LG   +  +   +L+  Y A +     
Sbjct: 261 CFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFL 320

Query: 145 SPFLPCKIVAIIGHSALAALL----WRKAQTVDLTDPPSMQSFYMFIFK 189
            P    + V +  H+ALA  +    W   Q     D  ++  +Y FI+ 
Sbjct: 321 MPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKD--AISQYYRFIWN 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1764 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 91  NAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPC 150
           N A    KD+ DVEGD + G +TLPIILGR +   +A       +G   VA   + FLP 
Sbjct: 167 NVAREIVKDIEDVEGDLKKGAKTLPIILGRRKAAYVA-----AFFG---VATVIASFLPV 218

Query: 151 KIVAIIGHSAL 161
           K    +G+ A+
Sbjct: 219 KAGVGVGYYAM 229

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
296082088	398	unnamed protein product [Vitis vinifera]	0.969	0.484	0.481	2e-49
224143266	284	predicted protein [Populus trichocarpa]	0.929	0.651	0.497	9e-49
219842170	411	homogentisate geranylgeranyl transferase	0.949	0.459	0.492	1e-48
359476155	397	PREDICTED: probable homogentisate phytyl	0.949	0.476	0.476	5e-48
295656253	401	homogentisate geranylgeranyl transferase	0.949	0.471	0.460	1e-47
171190284	317	homogentisate geranylgeranyl transferase	0.949	0.596	0.455	5e-45
295656255	189	homogentisate geranylgeranyl transferase	0.914	0.962	0.445	2e-44
374461300	239	aromatic prenyltransferase, partial [Epi	0.929	0.774	0.464	3e-44
295656261	184	homogentisate geranylgeranyl transferase	0.874	0.945	0.454	6e-43
377657555	394	homogentisate phytyltransferase [Brassic	0.949	0.479	0.433	1e-41

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 137/193 (70%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           +M V MG+M +SPPL    +I +++G AYS+++PLLRWK  PL+AA  I+I+  +++Q  
Sbjct: 172 LMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLA 231

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
           +F H QK+VLGR +V+ K ++F  A M  F+  IA  KD+PDV+GD+EFG+++  + LG+
Sbjct: 232 FFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQ 291

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
           ++VF + VNMLL AYGA  V GA+S  +P K   +  H ALA +LW +AQ+VDL+   ++
Sbjct: 292 KKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAV 351

Query: 181 QSFYMFIFKASGS 193
            SFYMFI+KAS S
Sbjct: 352 TSFYMFIWKASES 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 132/185 (71%)

Query: 5   AMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVH 64
           AMG+M +SP L    +I  ++G+ YS++LP LRWK    +AA  I+I+  +++Q  +FVH
Sbjct: 100 AMGIMFQSPLLFSALLISCVLGSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVH 159

Query: 65  FQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVF 124
            QK+VLG+  V  + L+FA A M  F+A IA  KD+PDV+GD+++G+++  + LG+ERVF
Sbjct: 160 MQKFVLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVF 219

Query: 125 SIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFY 184
            + VNMLL AYGA VV GA+S FLP K + I+GH  LA +LW +A++VDLT   S+ SFY
Sbjct: 220 WLCVNMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFY 279

Query: 185 MFIFK 189
           MFI+K
Sbjct: 280 MFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 137/191 (71%), Gaps = 2/191 (1%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           ++ + MG+  +SPPL+   +I + +G+ YS++LP LRWK    +AA  I+I+  +++Q  
Sbjct: 208 LLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLA 267

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
           +FVH QK+VLG+ +  P+ L+FA A M  F+AAIA  KD+PDVEGD+++G+++  + LG+
Sbjct: 268 FFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQ 327

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSP--FLPCKIVAIIGHSALAALLWRKAQTVDLTDPP 178
           ERV  + VNMLL AYGA VV GA+SP   LP K++ +IGHS +A +LW KAQ VDLT   
Sbjct: 328 ERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQK 387

Query: 179 SMQSFYMFIFK 189
           S+ SFYMFI+K
Sbjct: 388 SITSFYMFIWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 134/189 (70%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           +M V MG+M +SPPL    +I +++G AYS+++PLLRWK  PL+AA  I+I+  +++Q  
Sbjct: 196 LMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLA 255

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
           +F H QK+VLGR +V+ K ++F  A M  F+  IA  KD+PDV+GD+EFG+++  + LG+
Sbjct: 256 FFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQ 315

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
           ++VF + VNMLL AYGA  V GA+S  +P K   +  H ALA +LW +AQ+VDL+   ++
Sbjct: 316 KKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAV 375

Query: 181 QSFYMFIFK 189
            SFYMFI+K
Sbjct: 376 TSFYMFIWK 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 135/189 (71%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           +M  AMG++ +SPP+    +I ++ G+AYS++LPLLRWK +  +AA +I+++  + +   
Sbjct: 200 LMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLA 259

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
           +F H QKYVLGRP+VFP+ L FA   + +F   IA  KD+PDV+GD++FG+++  + LG+
Sbjct: 260 FFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQ 319

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
           +RVF + + +LL AY + +V GA+S FL  K+V +IGH  LA++LWR+A +V+L D  SM
Sbjct: 320 KRVFWLCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRRANSVNLEDNSSM 379

Query: 181 QSFYMFIFK 189
            SFYM I+K
Sbjct: 380 TSFYMSIWK 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/189 (45%), Positives = 132/189 (69%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           +M + MG+M +SPP++ C ++ +  G AYS+D+PL RWK +  +AA+ I+I+  + +Q  
Sbjct: 116 LMSIIMGIMFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLT 175

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
            F H Q+YVLGRPV+F + L FA   M +F   IA  KD+PDV+GD++FG++T+ + LG+
Sbjct: 176 VFYHIQQYVLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGK 235

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
           +RVF + + +LL AYG+ VV G++S  L  K+V + GH  LA++LW +A +VDL    S+
Sbjct: 236 KRVFWLCITILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSI 295

Query: 181 QSFYMFIFK 189
            SFYMFI+K
Sbjct: 296 TSFYMFIWK 304

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656255|gb|ADG26668.1| homogentisate geranylgeranyl transferase, partial [Daucus carota]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 126/182 (69%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           +M + MG+M +SPP++ C ++ +  G AYS+D+PL RWK +  +AA+ I+I+  + +Q  
Sbjct: 8   LMSIIMGIMFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKRNAFLAAMCIVIVRAITVQLT 67

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
            F H Q+YVLGRPV+F + L FA   M +F   IA  KD+PDV+GD++FG++T+ + LG+
Sbjct: 68  VFYHIQQYVLGRPVLFSRSLAFAILCMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGK 127

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
           +RVF + + +LL AYG+ VV GA+S  L  K+V + GH  LA++LW +A +VDL    S+
Sbjct: 128 KRVFWLCITILLIAYGSAVVIGASSSILLSKLVTVTGHCILASILWSRALSVDLESSKSI 187

Query: 181 QS 182
           +S
Sbjct: 188 KS 189

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 130/185 (70%)

Query: 5   AMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVH 64
           AMG+M +SPPL+   +  +++  AYSL LP LRWK S ++ +V II +  L++   +F+H
Sbjct: 34  AMGIMFKSPPLLYSILTVFLLATAYSLHLPFLRWKKSAVLTSVCIISVRALVIPLGFFLH 93

Query: 65  FQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVF 124
            QKYVLGRP +  K ++FA A M I +  IA  KD+PDV+GD+ FGL++L I LG+E+VF
Sbjct: 94  MQKYVLGRPAIITKPVMFAVAFMAIISTVIAVIKDIPDVDGDEAFGLQSLTIRLGKEKVF 153

Query: 125 SIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFY 184
            + V+ LL AYG  V+ GA+S  +  KI+ ++GH  LA++LW +A+TV +++P S  SFY
Sbjct: 154 WLGVSTLLMAYGTAVIVGASSTLMSNKIITVLGHCILASILWTRARTVVISEPASTLSFY 213

Query: 185 MFIFK 189
           +F++K
Sbjct: 214 LFVWK 218

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656261|gb|ADG26671.1| homogentisate geranylgeranyl transferase, partial [Carum carvi]

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 122/174 (70%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           +M + MG+M +SPP++ C ++ +  G AYS+D+PL RWK +  +AA+ I+I+  + +Q  
Sbjct: 8   LMSIIMGIMFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKRNAFLAAMCIVIVRAITVQLT 67

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
            F H Q+YVLGRPV+F + L FA   M +F   IA  KD+PDV+GD++FG++T+ + LG+
Sbjct: 68  VFYHIQQYVLGRPVLFSRSLAFAILCMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGK 127

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDL 174
           +RVF + + +LL AYG+ VV GA+S  L  K+V + GH  LA++LW +A +VDL
Sbjct: 128 KRVFWLCITILLIAYGSAVVIGASSSILLSKLVTVTGHCILASILWSRALSVDL 181

Source: Carum carvi

Species: Carum carvi

Genus: Carum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 128/189 (67%)

Query: 1   MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
           +M   +G ++ S PL     + +I+G AYS++LPLLRWK   L+AA+ I+ +  +++Q  
Sbjct: 193 IMSFWLGWIVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIA 252

Query: 61  YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
           +++H Q +V GRPV+F + L+FA A M  F+  IA  KD+PD+EGDK FG+R+  + LG+
Sbjct: 253 FYLHIQTHVFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQ 312

Query: 121 ERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
           ERVF   V++L  AY   ++ GATSPF+  K+++++GH  LA  LW +A++VDL+    +
Sbjct: 313 ERVFWTCVSLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLSSKTEI 372

Query: 181 QSFYMFIFK 189
            S YMFI+K
Sbjct: 373 TSCYMFIWK 381

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.949	0.480	0.407	1.8e-39
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.949	0.464	0.412	2.7e-36
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.949	0.460	0.407	9.2e-36
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.869	0.440	0.275	7.4e-12

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 77/189 (40%), Positives = 123/189 (65%)

Query:     1 MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
             +M   +G ++ S PL     + +++G AYS++LPLLRWK   L+AA+ I+ +  +++Q  
Sbjct:   192 IMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIA 251

Query:    61 YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
             +++H Q +V GRP++F + L+FA A M  F+  IA  KD+PD+EGDK FG+R+  + LG+
Sbjct:   252 FYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQ 311

Query:   121 ERVFSIAVNMLLTAYXXXXXXXXTSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
             +RVF   V +L  AY        TSPF+  K+++++GH  LA  LW +A++VDL+    +
Sbjct:   312 KRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEI 371

Query:   181 QSFYMFIFK 189
              S YMFI+K
Sbjct:   372 TSCYMFIWK 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 78/189 (41%), Positives = 118/189 (62%)

Query:     1 MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
             ++G+    ++ S PL     I  +  AAY++DLPLLRWK  P++ A++ I    +     
Sbjct:   206 ILGLGFAWIVGSWPLFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLG 265

Query:    61 YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
             +F+H Q  V  RP  FP+ L+F  AI+ I+   IA  KD+PD+EGD++FG+++L + LG 
Sbjct:   266 FFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGP 325

Query:   121 ERVFSIAVNMLLTAYXXXXXXXXTSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
             +RVF I V++L  AY        TSP L  KI+ ++GH+ LA++LW  A++ DLT    +
Sbjct:   326 KRVFWICVSLLEMAYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVL 385

Query:   181 QSFYMFIFK 189
             QSFYMFI+K
Sbjct:   386 QSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 77/189 (40%), Positives = 117/189 (61%)

Query:     1 MMGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFP 60
             ++G+    ++ S PL     I  +V +AY++DLPLLRWK  P++ A+  I    +     
Sbjct:   209 ILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLG 268

Query:    61 YFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
             +F+H Q  V  RP  FP+ L+F  AI+ I+   IA  KD+PD+EGD++FG+++L + LG 
Sbjct:   269 FFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGP 328

Query:   121 ERVFSIAVNMLLTAYXXXXXXXXTSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSM 180
             +RVF I V++L   Y        TSP L  KI+ ++GH+ LA++LW  A++VDLT    +
Sbjct:   329 KRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVL 388

Query:   181 QSFYMFIFK 189
              SFYMFI+K
Sbjct:   389 HSFYMFIWK 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 7.4e-12, P = 7.4e-12
 Identities = 49/178 (27%), Positives = 82/178 (46%)

Query:    13 PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGR 72
             P +   + +   +G  YS+  P LR K  P+ A + I  + G LL F  + H  +  LG 
Sbjct:   206 PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGL 262

Query:    73 PVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLL 132
             P  +   + F  + + +F   IA +KDLPDVEGD++F + TL   LG   +  +   +LL
Sbjct:   263 PFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLL 322

Query:   133 TAYXXXXXXXXTSPFLPCKIVAIIGHSALAALLWRKAQTVDLTD--PPSMQSFYMFIF 188
               Y          P +    + I  H  LA+ L  +   ++  +    ++  +Y FI+
Sbjct:   323 VNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIW 380


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.144   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       191   0.00094  110 3  11 21  0.46    31
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.27u 0.09s 15.36t   Elapsed:  00:00:00
  Total cpu time:  15.27u 0.09s 15.36t   Elapsed:  00:00:00
  Start:  Fri May 10 05:32:59 2013   End:  Fri May 10 05:32:59 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032719001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032449001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa)	•		•			•	•		0.961
	GSVIVG00023813001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (340 aa)						•	•		0.905
	GSVIVG00020095001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (340 aa)						•	•		0.905
	GSVIVG00015688001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (196 aa)						•	•		0.902
	GSVIVG00016328001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa)			•			•	•		0.850
	GSVIVG00027948001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (420 aa)						•	•		0.810
	GSVIVG00017359001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa)						•	•		0.804
	GSVIVG00019306001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)			•						0.430
	GSVIVG00029773001	SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (142 aa)			•						0.429
	GSVIVG00013955001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa)	•					•	•		0.420

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	5e-66
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-27
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	5e-08
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	1e-05
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	1e-04
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	2e-04
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	4e-04
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  203 bits (519), Expect = 5e-66
 Identities = 87/188 (46%), Positives = 131/188 (69%)

Query: 2   MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPY 61
           M   MG ++ S PL     + +++G AYS++LPLLRWK S + AA  I+ +  +++Q  +
Sbjct: 80  MSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAF 139

Query: 62  FVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRE 121
           F+H Q +VLGRP VF + L+FA A M  F+  IA  KD+PDVEGD+ FG+R+  + LG++
Sbjct: 140 FLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQK 199

Query: 122 RVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQ 181
           RVF + VN+L  AY A ++ GA+S FL  KI+ ++GH  LA++LW++AQ+VDL+   ++ 
Sbjct: 200 RVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAIT 259

Query: 182 SFYMFIFK 189
           SFYMFI+K
Sbjct: 260 SFYMFIWK 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  104 bits (262), Expect = 3e-27
 Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 5/182 (2%)

Query: 9   MLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKY 68
            L  P L+I   I  ++G AYSL  P +R K  PL+AA+ I  + G+++    F+HFQ +
Sbjct: 116 ALLGPWLLITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-W 172

Query: 69  VLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAV 128
           +LG  V+ P  +      + +F  AIA  KD+PD+EGD+++ + T  + LG++ VF ++ 
Sbjct: 173 LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSC 232

Query: 129 NMLLTAYGAGVVAGATSPFLPCK-IVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFI 187
            +L   Y  G++A              I+ H  L ALLW ++Q VDL D  ++  FY FI
Sbjct: 233 WVLTACY-LGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFI 291

Query: 188 FK 189
           +K
Sbjct: 292 WK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 15/191 (7%)

Query: 5   AMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVH 64
            +  +L  P L++  ++  ++G  YS   P LR K  PL+  + + +  GLL+       
Sbjct: 84  LLLALLLGPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGA--- 137

Query: 65  FQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVF 124
              Y +G  +  P  LL  A  + + + AI  + D+ DVEGD++ G+RTLP+ LGR+R  
Sbjct: 138 ---YAVGGDIPSP--LLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRAL 192

Query: 125 SIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFY 184
           ++          A ++       L   ++ ++    LA  L   A+ +   +P      +
Sbjct: 193 AL----YALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTF 248

Query: 185 MFIFKASGSTL 195
           +FI    G  L
Sbjct: 249 LFIALLFGLLL 259

Length = 259

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 10/116 (8%)

Query: 8   MMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQK 67
            ++  P   + FII  I+G  YS+     R K  PL   + + +L  L        ++Q 
Sbjct: 99  AVIGGPKFALIFIIPLILGILYSVFFKR-RLKRIPLFKNLVVSLLWALSPLILGVYYYQ- 156

Query: 68  YVLGRPVVFPKQLLFAA-AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRER 122
                  +F   LL+A    +  F   I F  D+ D+EGD++ GL+TLPI+LG+ER
Sbjct: 157 -----LTIFSLLLLYAVFIFLKSFIREIVF--DIKDIEGDRKSGLKTLPIVLGKER 205

Length = 285

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 22  WWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81
           + +  AA  L L     K    +  + + +  GL                  +     LL
Sbjct: 119 FLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGS------LPLLAWLL 172

Query: 82  FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVA 141
             AAI+  +         + D+EGD++ GL++LP++ G ++  ++A+ +LL A    V+ 
Sbjct: 173 LLAAIL--WTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALAL-LLLLASALLVLL 229

Query: 142 GATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMF 186
           G  +  L   ++ ++G    A LL  +   VD+ DPP+  + +  
Sbjct: 230 GLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDV 272

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 20/147 (13%)

Query: 2   MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPY 61
           +G+    ++     ++  ++  ++G  Y+  L     K   L+  + +  L G+      
Sbjct: 94  LGLIAAYLISPLAFLVVILVS-VLGILYNWKL-----KEYGLIGNLYVAFLTGMT----- 142

Query: 62  FVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRE 121
           F+ F    +G      + ++  AA+  +        KD+ DVEGD+  G RTL I+ G +
Sbjct: 143 FI-FGGIAVGEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEK 198

Query: 122 RVFSIAVNMLLTAYGAGVVAGATSPFL 148
               IA  + + A     V  +  P+L
Sbjct: 199 IAGRIAAALFILA-----VLLSPLPYL 220

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 91  NAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAV 128
           N A    KD+ D+EGDK  G +TLPII+G++R   I  
Sbjct: 167 NVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGA 204

Length = 277

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 98  KDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGA 137
           KD+ D+EGD+  G RTLPI++G  +   +A   LL A  A
Sbjct: 177 KDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAA 216

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.92
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.92
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.91
PRK13595	292	ubiA prenyltransferase; Provisional	99.91
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.91
PLN02922	315	prenyltransferase	99.91
PRK05951	296	ubiA prenyltransferase; Reviewed	99.89
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.88
PRK12872	285	ubiA prenyltransferase; Reviewed	99.88
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.88
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.86
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.86
PRK13105	282	ubiA prenyltransferase; Reviewed	99.86
PRK13591	307	ubiA prenyltransferase; Provisional	99.85
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.83
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.83
PLN00012	375	chlorophyll synthetase; Provisional	99.8
PRK12884	279	ubiA prenyltransferase; Reviewed	99.78
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.76
PRK12882	276	ubiA prenyltransferase; Reviewed	99.75
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.7
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.69
PRK12875	282	ubiA prenyltransferase; Reviewed	99.69
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.69
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.68
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.67
PRK12888	284	ubiA prenyltransferase; Reviewed	99.64
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.64
PRK13106	300	ubiA prenyltransferase; Reviewed	99.6
PRK12886	291	ubiA prenyltransferase; Reviewed	99.59
PRK12874	291	ubiA prenyltransferase; Reviewed	99.56
PRK12895	286	ubiA prenyltransferase; Reviewed	99.56
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.55
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.54
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.54
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.53
PRK12876	300	ubiA prenyltransferase; Reviewed	99.48
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.48
PRK12871	297	ubiA prenyltransferase; Reviewed	99.47
PRK13592	299	ubiA prenyltransferase; Provisional	99.4
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.36
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.31
PRK12873	294	ubiA prenyltransferase; Reviewed	99.25
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.24
KOG4581	359	consensus Predicted membrane protein [Function unk	98.4
PLN02776	341	prenyltransferase	97.85
PRK08238	479	hypothetical protein; Validated	97.39
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	96.89
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	96.55
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	94.79
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	93.94
PRK12884	279	ubiA prenyltransferase; Reviewed	93.91
PRK13592	299	ubiA prenyltransferase; Provisional	93.49
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	93.0
PRK11383	145	hypothetical protein; Provisional	92.21
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	92.0
PRK13595	292	ubiA prenyltransferase; Provisional	91.96
PRK12882	276	ubiA prenyltransferase; Reviewed	91.53
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	91.51
PRK12872	285	ubiA prenyltransferase; Reviewed	90.54
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	89.76
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	89.25
PRK08238	479	hypothetical protein; Validated	89.08
PRK12875	282	ubiA prenyltransferase; Reviewed	88.47
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	88.27
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	87.57
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	87.41
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	87.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	85.9
PRK12392	331	bacteriochlorophyll c synthase; Provisional	84.62
PRK12873	294	ubiA prenyltransferase; Reviewed	84.43
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.38
PRK04375	296	protoheme IX farnesyltransferase; Provisional	84.26
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.18
PLN00012	375	chlorophyll synthetase; Provisional	83.82
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	83.32
PRK13591	307	ubiA prenyltransferase; Provisional	82.8
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	81.89
PRK13362	306	protoheme IX farnesyltransferase; Provisional	81.71
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	80.48
PRK12871	297	ubiA prenyltransferase; Reviewed	80.08
PRK05951	296	ubiA prenyltransferase; Reviewed	80.06

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=2.1e-47  Score=323.72  Aligned_cols=196  Identities=45%  Similarity=0.836  Sum_probs=184.8

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..|++++++....+++++++||.++||+|+||+|++++.|....++..+++|+|.|+++..++++..++.+++
T Consensus        80 lg~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~  159 (280)
T PLN02878         80 MSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLI  159 (280)
T ss_pred             HHHHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHH
Confidence            57888999998899998888889999999999999999999999999999999999999999999988887766777778


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      +...++++++.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+..++.++..+++..+.++|+++
T Consensus       160 ~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l  239 (280)
T PLN02878        160 FATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGIL  239 (280)
T ss_pred             HHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            88778899999999999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             HHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhhh
Q 029089          162 AALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVL  197 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~~~~~  197 (199)
                      +..+|+|++++|.++++++++|||||||+||+||++
T Consensus       240 ~~~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l  275 (280)
T PLN02878        240 ASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFL  275 (280)
T ss_pred             HHHHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999985

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.6e-41  Score=292.85  Aligned_cols=192  Identities=33%  Similarity=0.577  Sum_probs=171.5

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..| +..+..++++.+++++||.  ||+|+||+|+.++++++..+|..+++|.+.|.+... ..+..++..++
T Consensus       110 lal~la~~~~-~~~~~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~-~~~~~~~~~~~  185 (308)
T PRK12887        110 LALILAALLG-PWLLITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLL-GGSVLIPPTVW  185 (308)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCcHHHH
Confidence            5778888766 6777777899999999994  999999999999999999999988899888765332 33334556777


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      +..+++++++.++++.||+||+||||+.|+||+|+++|+|++.+++..+..++|+..+..++.+........+.++|+++
T Consensus       186 l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~  265 (308)
T PRK12887        186 LLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLIL  265 (308)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            77788889999999999999999999999999999999999999999999999999999988888877777788999999


Q ss_pred             HHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhhh
Q 029089          162 AALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVL  197 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~~~~~  197 (199)
                      +..+|+|.+++|.+|++++++|||||||+||+||++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~  301 (308)
T PRK12887        266 LALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLL  301 (308)
T ss_pred             HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999985

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.92  E-value=7e-24  Score=183.56  Aligned_cols=158  Identities=16%  Similarity=0.102  Sum_probs=128.7

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+++++..| |+++..+++|.+++++||.  ||+|+|++| +||+.+++.+|..++.|.++. |++.      ++...+
T Consensus       109 ~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yv-~t~~------~~~~~~  177 (304)
T PRK07419        109 GILAIALQSD-WTVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPLAVAAALYS-QTPS------WSLIPL  177 (304)
T ss_pred             HHHHHHHhhc-HHHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-hcCC------CCHHHH
Confidence            5778887755 8889899999999999996  999999999 699999999998888888763 4422      344556


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      .......+.+.+++..||+||+|+||++|+||+|+++|+|++.+++..+...+|++.+.....+..++. ..+.+...++
T Consensus       178 ~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~-~Ll~ll~lPl  256 (304)
T PRK07419        178 AASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWT-TLLSLLSLPF  256 (304)
T ss_pred             HHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHH
Confidence            666778888999999999999999999999999999999999999999999999999888777645443 3455555555


Q ss_pred             HHHHHHHhhh
Q 029089          162 AALLWRKAQT  171 (199)
Q Consensus       162 ~~~l~~~~~~  171 (199)
                      +....++.++
T Consensus       257 ~~~~~~~~~~  266 (304)
T PRK07419        257 AIKLIRLVRE  266 (304)
T ss_pred             HHHHHHHHHH
Confidence            5544554444

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.92  E-value=1.9e-23  Score=179.50  Aligned_cols=158  Identities=16%  Similarity=0.091  Sum_probs=128.0

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      .|+++.+..| |+++..++++.+++++||.  ||+|+|++| +||+++++.+|..++.|.++ .|++      .++...+
T Consensus        96 ~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~y-vqt~------~~~~~~~  164 (285)
T TIGR02235        96 GIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAALY-AQSQ------SFSLIPW  164 (285)
T ss_pred             HHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHHH-HhCC------cCcHHHH
Confidence            4777888766 8899999999999999996  999999999 69999999999877888776 3543      2344556


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      .......+.+.+++..||+||+|+||++|+||+|+++|+|++.+++..+...+|+..+.....+..++ .....+...+.
T Consensus       165 l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~-~~ll~ll~lPl  243 (285)
T TIGR02235       165 KASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPW-TTLLALASIPW  243 (285)
T ss_pred             HHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Confidence            66778888999999999999999999999999999999999999999999999999888877764443 33445555555


Q ss_pred             HHHHHHHhhh
Q 029089          162 AALLWRKAQT  171 (199)
Q Consensus       162 ~~~l~~~~~~  171 (199)
                      +....++.++
T Consensus       244 ~~~~~~~~~~  253 (285)
T TIGR02235       244 AVKLIRLVRQ  253 (285)
T ss_pred             HHHHHHHHHH
Confidence            5444444443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.91  E-value=1.2e-22  Score=176.90  Aligned_cols=164  Identities=15%  Similarity=0.083  Sum_probs=125.7

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCC--------
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRP--------   73 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~--------   73 (199)
                      +|+++++..| |.++..++++.+++++||.  ||+|+|++| +||+.++..+|..++.|.++. |++..+..        
T Consensus       104 ~Gl~L~~~~g-~~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~v~g~~yv-~t~~~~~~~~~~~~~~  178 (317)
T PRK13387        104 LGVYLCMNTS-WLLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGIFLLAVYI-NTNTITIESLLFQGEM  178 (317)
T ss_pred             HHHHHHHHhc-HHHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHHHHHHHHH-hcCCCchHHHHhcccc
Confidence            5788888766 8888889999999999996  999999999 799999999997777887663 44321110        


Q ss_pred             --CcchH----HHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcch
Q 029089           74 --VVFPK----QLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPF  147 (199)
Q Consensus        74 --~~~~~----~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~  147 (199)
                        .+++.    .+++......+.+.++++.||+||+|+||++|+||+|+++|+|++.+++..+...+|+..+..+..+..
T Consensus       179 ~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~l  258 (317)
T PRK13387        179 FTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYI  258 (317)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              00000    122356777888999999999999999999999999999999999999999999999998877777644


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Q 029089          148 LPCKIVAIIGHSALAALLWRKAQT  171 (199)
Q Consensus       148 ~~~~~~~~l~~~~~~~~l~~~~~~  171 (199)
                      ++. ..+.+...+++....++.++
T Consensus       259 p~~-~ll~ll~lP~~~~~~~~~~~  281 (317)
T PRK13387        259 SPW-ALLSFLTLRKPISNLQSFQK  281 (317)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHh
Confidence            433 34455555555544554444

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.91  E-value=5.2e-23  Score=176.45  Aligned_cols=170  Identities=20%  Similarity=0.269  Sum_probs=125.4

Q ss_pred             hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHH
Q 029089            3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLF   82 (199)
Q Consensus         3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~   82 (199)
                      |+++++..+ +.......++.+++++||.  ||+|+|++|++++++. ..+|.+...|...      .+.+  .+... +
T Consensus       109 ~l~la~~l~-~~~~~l~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~p~~~~~~~------~g~~--~~~~~-l  175 (292)
T PRK13595        109 LLYLALLLP-PAATLLLLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYALPLALPALA------LGAP--VPWPP-L  175 (292)
T ss_pred             HHHHHHHHh-HHHHHHHHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHHHHHHHHHH------cCCc--chHHH-H
Confidence            566777766 4444555678899999995  9999999999999997 6677766555321      1211  11221 1


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 029089           83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALA  162 (199)
Q Consensus        83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (199)
                        ....++..+++++||++|+||||+.|+||+|+++|+|++.+++..+++++-  .+ .....  .+.+....+.|...+
T Consensus       176 --~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~--~~-~~~~~--~~~~~~~~~~~~~~~  248 (292)
T PRK13595        176 --LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAG--AL-LWPVS--RLTALALWLICGGMA  248 (292)
T ss_pred             --HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHH--HH-HHHhc--chHHHHHHHHHHHHH
Confidence              334566799999999999999999999999999999999999998888862  22 22222  223334667777777


Q ss_pred             HHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhhh
Q 029089          163 ALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVL  197 (199)
Q Consensus       163 ~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~~~~~  197 (199)
                      .-+|     .|.+++++++.|..|+|.++.+..+.
T Consensus       249 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~  278 (292)
T PRK13595        249 LALW-----RRPTPETAHRLYPLSIVTPWIVGTVA  278 (292)
T ss_pred             HHHh-----cCCCHHHHhccchHHHHHhHHHHHHH
Confidence            5444     69999999999999999999887653

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.91  E-value=1.6e-22  Score=173.64  Aligned_cols=159  Identities=14%  Similarity=0.102  Sum_probs=124.2

Q ss_pred             chhhHHHHhcc-----HHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcc
Q 029089            2 MGVAMGMMLRS-----PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVF   76 (199)
Q Consensus         2 lgl~l~~~~g~-----~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~   76 (199)
                      +|+++.+..|.     ++++..++++.+++++||.  ||+|+|++| +||+.+++.+|...+.|.++. |++.      +
T Consensus        93 ~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g~~yv-q~~~------~  162 (284)
T TIGR00751        93 SGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLGTQYL-QAHR------V  162 (284)
T ss_pred             HHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHHHHHH-hcCC------C
Confidence            57777777663     2677888899999999996  999999999 699999999998888887763 4422      2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 029089           77 PKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAII  156 (199)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l  156 (199)
                      +...++......+.+.+++..||+||+|+|+++|+||+|+++|+|++.+++..+...+|+..+.....+..++. ..+.+
T Consensus       163 ~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~-~ll~l  241 (284)
T TIGR00751       163 DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWW-CVLFL  241 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHH-HHHHH
Confidence            34444555667788899999999999999999999999999999999999999999999888877666544433 34444


Q ss_pred             HHHHHHHHHHHHhhh
Q 029089          157 GHSALAALLWRKAQT  171 (199)
Q Consensus       157 ~~~~~~~~l~~~~~~  171 (199)
                      ...+++...+++.++
T Consensus       242 l~lPl~~~~~~~~~~  256 (284)
T TIGR00751       242 LAAPLLLKAAGPVRS  256 (284)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            444455444554444

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02922 prenyltransferase

Probab=99.91  E-value=4.2e-22  Score=173.27  Aligned_cols=156  Identities=14%  Similarity=0.163  Sum_probs=121.5

Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhC-CCC---cchHHHHHHHHH
Q 029089           11 RSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLG-RPV---VFPKQLLFAAAI   86 (199)
Q Consensus        11 g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~-~~~---~~~~~~~~~~~~   86 (199)
                      ++|++++.+++|++++++||.  ||+|+|++| +||+.+++.+|..++.|.|+ .|++..+ .+.   .++...+...++
T Consensus       121 ~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l~v~g~y~-~~~~~~~~~~~~~~~~~~~~~l~slp  196 (315)
T PLN02922        121 GNIRVILLLAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPLATTAFYL-ALASGAGGSEMAILPLTPTVLSASVL  196 (315)
T ss_pred             cChHHHHHHHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHHHHHHHHH-HhcccccccccccccccHHHHHHHHH
Confidence            568899999999999999996  999999999 69999999999777788765 3543111 001   234556677788


Q ss_pred             HHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 029089           87 MPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLW  166 (199)
Q Consensus        87 ~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  166 (199)
                      ..+.+.++++.||+||+|+||++|+||+|+++|+|++.+++..+...+|+..+.....+..++......+...++.....
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~  276 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVV  276 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999998888777555433233333333343333


Q ss_pred             HHhh
Q 029089          167 RKAQ  170 (199)
Q Consensus       167 ~~~~  170 (199)
                      ++.+
T Consensus       277 ~~~~  280 (315)
T PLN02922        277 DFVE  280 (315)
T ss_pred             HHHH
Confidence            4333

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.89  E-value=3.3e-21  Score=166.37  Aligned_cols=182  Identities=15%  Similarity=0.090  Sum_probs=130.9

Q ss_pred             hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHH
Q 029089            3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLF   82 (199)
Q Consensus         3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~   82 (199)
                      |+++....| +..+..++++.++++.||.  ||+|+|++| +||+.+++.+|..++.|.++. +++.      .+...+.
T Consensus       107 g~~l~~~~~-~~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~~~vlg~~~~-~~~~------~~~~~~~  175 (296)
T PRK05951        107 GWSLVLDRG-IGAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSHMLVMGLIYV-WLGN------LSSPNLL  175 (296)
T ss_pred             HHHHHHhcc-HHHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-HhCc------ccHHHHH
Confidence            344554434 6777777889999999996  999999988 799999999998888888764 4322      2234445


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 029089           83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALA  162 (199)
Q Consensus        83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (199)
                      ......+++.++.+.||+||+|+||++|+||+|+++|+|++ +++......+|+..+.....+..++......+......
T Consensus       176 ~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~  254 (296)
T PRK05951        176 AGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAY  254 (296)
T ss_pred             HHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            55677778899999999999999999999999999999999 88888888899888877777644433222222222222


Q ss_pred             HHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhh
Q 029089          163 ALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLV  196 (199)
Q Consensus       163 ~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~~~~  196 (199)
                      ....++.+..|.++.+.+.+.++..=.++...++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~  288 (296)
T PRK05951        255 ALCLWQLRKFPPDPDEATVQLFMLFGYLYILATL  288 (296)
T ss_pred             HHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHH
Confidence            2234444555666666777777665555554443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.88  E-value=5.4e-21  Score=163.84  Aligned_cols=134  Identities=20%  Similarity=0.270  Sum_probs=102.6

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..++|.....+.++.+.+++||.  ||+|+||++++|++.++..++.....+.+.. +    + +  .+...+
T Consensus        95 ~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~-~----~-~--~~~~~~  164 (283)
T TIGR01476        95 AGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAI-F----A-P--LTWQSV  164 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHHH-h----C-C--CCHHHH
Confidence            355666666766646666778889999996  9999999998999999998874333332221 1    1 1  233444


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhc
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATS  145 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~  145 (199)
                      +.....++++.+++..||+||+||||++|+||+|+++|+|++.+++..++..+|+..+......
T Consensus       165 ~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~  228 (283)
T TIGR01476       165 VVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIW  228 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456667789999999999999999999999999999999999999999888887776544443

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.88  E-value=6.1e-21  Score=163.22  Aligned_cols=178  Identities=22%  Similarity=0.259  Sum_probs=120.6

Q ss_pred             hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCc-cccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHH
Q 029089            3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLL-RWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQL   80 (199)
Q Consensus         3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lppl-rlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~   80 (199)
                      |+++.....++..+..++++.++++.||.  ||. |+||.|.+||++++..+| .+...+.+.+ +     .  .++...
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~-~-----~--~~~~~~  163 (285)
T PRK12872         94 GAYLLAVIGGPKFALIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY-Q-----L--TIFSLL  163 (285)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc-c-----c--ccchHH
Confidence            34443333457777777888999999995  555 689999999999999999 4444454432 1     1  123344


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 029089           81 LFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSA  160 (199)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~  160 (199)
                      +....+.++++++++++||+||+||||++|+||+|+++|+|++.+++..+...+++..+.....+..++......+.-..
T Consensus       164 ~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (285)
T PRK12872        164 LLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLAY  243 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence            45556777889999999999999999999999999999999999999999999988888666665433322222221111


Q ss_pred             HHHHHHHHhhhcCCCC---chHHHHHHHHHHHH
Q 029089          161 LAALLWRKAQTVDLTD---PPSMQSFYMFIFKA  190 (199)
Q Consensus       161 ~~~~l~~~~~~~d~~~---~~~~~~~y~~~w~l  190 (199)
                      .........++.|.++   .....+.+|+.+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  276 (285)
T PRK12872        244 VLYYIIKLFAADDKKDLLYLSLLDKEHMLLGLI  276 (285)
T ss_pred             HHHHHHHHHhcccccchhHHHHHhHHHHHHHHH
Confidence            1111122222333332   33567777777654

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.88  E-value=9.4e-21  Score=162.30  Aligned_cols=149  Identities=19%  Similarity=0.210  Sum_probs=122.9

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+++...++ |.++.++.+|.+.+++||.  +|.|+++.| +||+.+++.+|...+.|.|+ .|++.      ++...+
T Consensus       111 lg~~~~~~s~-~~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vffG~l~v~g~~y-iqt~~------~~~~~l  179 (303)
T COG1575         111 LGVILAALSD-WLVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFFGPLIVLGAYY-IQTGR------LSWAIL  179 (303)
T ss_pred             HHHHHHHHhh-hHHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHHHHHHHHHHHH-Hhccc------chHHHH
Confidence            4566666655 6688899999999999997  999999999 69999999999888888876 35432      334566


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      ...++..+.+.+++..||+||+|.|+++|++|+|+++|+|+++.+...++..+|+..++..+....++.. .+.+.-.++
T Consensus       180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~-ll~ll~~Pl  258 (303)
T COG1575         180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWG-LLFLLALPL  258 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHH
Confidence            6778888889999999999999999999999999999999999999999999999999887777666554 333333334


Q ss_pred             H
Q 029089          162 A  162 (199)
Q Consensus       162 ~  162 (199)
                      +
T Consensus       259 ~  259 (303)
T COG1575         259 A  259 (303)
T ss_pred             H
Confidence            4

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.86  E-value=1.8e-20  Score=162.51  Aligned_cols=128  Identities=20%  Similarity=0.198  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHH
Q 029089           13 PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNA   92 (199)
Q Consensus        13 ~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (199)
                      +..+..++++.+++++||.  ||+|+||++.+||+.++..++..+..+.+.  .+   +   .++...+......++++.
T Consensus       128 ~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a--~~---g---~~~~~~~l~~~~~~l~~~  197 (306)
T TIGR02056       128 PNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASYIALPWWAGHA--LF---G---ELNPDIAVLTLIYSIAGL  197 (306)
T ss_pred             hHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHHHHHHHHHHH--Hh---C---CCcHHHHHHHHHHHHHHH
Confidence            6677777889999999996  999999999899999998888544444332  11   1   123344455567778899


Q ss_pred             HHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 029089           93 AIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPC  150 (199)
Q Consensus        93 ~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~  150 (199)
                      ++++.||+||+|+|+++|+||+|+++|+|++.+++..+...+|...+........++.
T Consensus       198 ~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~  255 (306)
T TIGR02056       198 GIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLY  255 (306)
T ss_pred             HHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            9999999999999999999999999999999999998888887776665555444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.86  E-value=6.2e-20  Score=157.84  Aligned_cols=137  Identities=16%  Similarity=0.192  Sum_probs=111.9

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|++++...+ ++.+..++++.+++++||.  ||.|+|+++ +||+.++..+|...+.|.++. +++      ..+.+.+
T Consensus       103 ~g~~l~~~~~-~~~~~~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~~~~~~~~~-~~~------~~~~~~~  171 (293)
T PRK06080        103 LGLYLVAVSG-WWLLLLGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLVIVLGTYYL-QAG------TVDSAVF  171 (293)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHHHHHHHHHH-hcC------CCCHHHH
Confidence            3555665544 6777777889999999996  999999998 699999999997766666542 321      1234556


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLP  149 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~  149 (199)
                      +...+.++++.++++.||+||+|+||++|+||+|+++|+|++.+++..+..++|+..+.....+..++
T Consensus       172 ~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~  239 (293)
T PRK06080        172 LPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP  239 (293)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            66678888899999999999999999999999999999999999999999999998888877764443

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=6.7e-20  Score=157.19  Aligned_cols=127  Identities=20%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHH
Q 029089            3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLF   82 (199)
Q Consensus         3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~   82 (199)
                      |+.+... ++|..+..+.++++.++.||.  ||.|+|++|+.+++++++++..+.++|.++.  +    .  ..+...+.
T Consensus        96 ~l~l~~~-~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~--~----~--~~~~~~~l  164 (282)
T PRK13105         96 LVVLLAV-GSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLVLA--G----A--PFTAALWA  164 (282)
T ss_pred             HHHHHHH-hhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHHHh--h----c--cccHHHHH
Confidence            3444443 458888888899999999995  9999999999889888888876677787653  1    1  12334455


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHH
Q 029089           83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVV  140 (199)
Q Consensus        83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~  140 (199)
                      ....+.+++.+++++||+||+|+||++|+||+|+++|+|++.+++..+...+++..+.
T Consensus       165 ~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~  222 (282)
T PRK13105        165 VLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA  222 (282)
T ss_pred             HHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            6677788899999999999999999999999999999999999999999999877663

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.85  E-value=6.1e-20  Score=158.31  Aligned_cols=135  Identities=19%  Similarity=0.132  Sum_probs=98.8

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCC--CCCc--cccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcch
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLD--LPLL--RWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFP   77 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~--lppl--rlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~   77 (199)
                      +|+++++..| |.+  .++++.+.+++||.+  .+|.  |+|+.|.+||+.++..||.....+.-.+ +    +   .. 
T Consensus       111 lGl~La~~~g-~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~-~----~---~~-  178 (307)
T PRK13591        111 LGTYILAMDG-MLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSY-C----G---SL-  178 (307)
T ss_pred             HHHHHHHHHh-HHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhh-h----h---hH-
Confidence            6788888766 544  346788899999963  2244  8899999999999999996433221110 1    1   01 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchh
Q 029089           78 KQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFL  148 (199)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~  148 (199)
                      .+...+..+.....++++++||++|+||||++|+||+|+++|+|++.++...+..++|++.+.....+-.+
T Consensus       179 ~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~  249 (307)
T PRK13591        179 IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIA  249 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11112222233335788899999999999999999999999999999999999999999888777776443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.83  E-value=6.8e-19  Score=153.18  Aligned_cols=130  Identities=22%  Similarity=0.293  Sum_probs=100.8

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQL   80 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~   80 (199)
                      +|+.+++..| +.....++++.+++++||.  ||+|+||++.+||+.++..++ .++..|.+. .++    .  ..+...
T Consensus       122 ~~~~l~~~l~-~~~~~l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~-~~~----~--~~~~~~  191 (314)
T PRK07566        122 LGLAVAYLLG-PWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAA-FGA----G--LPSWPI  191 (314)
T ss_pred             HHHHHHHHHC-hHHHHHHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHHHHH-hcc----C--CCCHHH
Confidence            3556666666 5556666778889999997  999999999999999999987 444445432 221    1  123344


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHH
Q 029089           81 LFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVA  141 (199)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~  141 (199)
                      ++.....+++..+++..||++|+|+||++|+||+|+++|+|++.+++..++..+|+..+..
T Consensus       192 ~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~  252 (314)
T PRK07566        192 VILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIAL  252 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666677899999999999999999999999999999999999999888888776544

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.83  E-value=7.1e-19  Score=153.98  Aligned_cols=124  Identities=19%  Similarity=0.268  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHH
Q 029089           13 PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNA   92 (199)
Q Consensus        13 ~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (199)
                      +.++..++++.+++++||.  ||+|+||+++.|+..+++.++.....+.+.  .   .+.   .+...+......++++.
T Consensus       125 ~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~~~~a--~---~g~---~~~~~~~l~~~~~l~~~  194 (331)
T PRK12392        125 MVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFITFLSANA--L---FSD---IRPEVVWLAGLNFFMAI  194 (331)
T ss_pred             HHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHHHHHHHHHHH--H---hcC---CCHHHHHHHHHHHHHHH
Confidence            4455555678889999997  999999999999999999998544333321  1   121   23344455567788899


Q ss_pred             HHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 029089           93 AIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSP  146 (199)
Q Consensus        93 ~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~  146 (199)
                      +++++||++|+|||++.|+||+|+++|+|++.+++........++.+..+....
T Consensus       195 ~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~  248 (331)
T PRK12392        195 ALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWG  248 (331)
T ss_pred             HHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999887776566555555555444

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.80  E-value=6.9e-18  Score=149.88  Aligned_cols=117  Identities=20%  Similarity=0.223  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHH
Q 029089           13 PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNA   92 (199)
Q Consensus        13 ~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   92 (199)
                      +..+..++++++++++||.  ||+|+||++++||+..+..++..+..+.+.  .+   +   .++...+....+.++++.
T Consensus       197 ~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a--~~---g---~~s~~~illal~~~l~~l  266 (375)
T PLN00012        197 PIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAGQA--LF---G---TLTPDVVVLTLLYSIAGL  266 (375)
T ss_pred             HHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHHHHHHHHHHHH--Hc---C---CCCHHHHHHHHHHHHHHH
Confidence            5556666778889999996  999999999999999888887433332221  11   2   123344455567778899


Q ss_pred             HHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHH
Q 029089           93 AIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV  139 (199)
Q Consensus        93 ~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~  139 (199)
                      ++++.||+||+|||++.|++|+|+++|+|++.+++..+..+..+..+
T Consensus       267 ai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~  313 (375)
T PLN00012        267 GIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA  313 (375)
T ss_pred             HHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998765555544333

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.78  E-value=2.9e-17  Score=140.26  Aligned_cols=129  Identities=22%  Similarity=0.351  Sum_probs=98.3

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.++...| +......+++.+.++.||.     ++||+|..+|++++..++.++..|....      +..   +...+
T Consensus        94 ~~~~~~~~l~-~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~~------~~~---~~~~~  158 (279)
T PRK12884         94 LGLIAAYLIS-PLAFLVVILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIAV------GEL---NEAVI  158 (279)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHHh------CCC---chHHH
Confidence            4556666666 4555556778889999994     3599998899999999997777675431      111   11344


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhc
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATS  145 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~  145 (199)
                      ......++++.+++..||+||+|+||++|+||+|+++|+|++.+++.......++.....+..+
T Consensus       159 ~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12884        159 LLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG  222 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446677888899999999999999999999999999999999999888888776665544443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.76  E-value=2e-17  Score=138.10  Aligned_cols=112  Identities=29%  Similarity=0.576  Sum_probs=87.3

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+ +..+....++.+.+++||   ||+|+||+|+.++++++..++.....|.+..      +.  ..+.+.+
T Consensus        82 l~l~l~~~~~-~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~  149 (257)
T PF01040_consen   82 LGLLLALLLG-PWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA------GG--DPPPPPF  149 (257)
T ss_pred             HHHHHHHhcC-chhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc------CC--cccHHHH
Confidence            4556666666 444455567788889999   9999999999999999999997777776541      11  1133444


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFS  125 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~  125 (199)
                      ....+.+++.......+|++|+|+|++.|+||+|+++|+|++.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  150 LLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            44455567788889999999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.75  E-value=1.1e-16  Score=136.82  Aligned_cols=124  Identities=28%  Similarity=0.394  Sum_probs=90.6

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+ +.......++.++.+.||.     |+||+|.+||+.++...|.++..|....      +. .. ....+
T Consensus        95 ~g~~~~~~l~-~~~~~~~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~~------~~-~~-~~~~~  160 (276)
T PRK12882         95 AGVALAFLLP-PLCLAIALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAAV------GT-EG-LLALL  160 (276)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHHh------cc-cc-hHHHH
Confidence            4566666656 4445555677788999994     5599999999999999986666665331      11 11 11223


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV  139 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~  139 (199)
                      ......+++..+++++||+||+|+|+++|+||+|+++|+|++.+++........+...
T Consensus       161 ~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~  218 (276)
T PRK12882        161 VLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP  218 (276)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3345566778899999999999999999999999999999999988777666544333

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.70  E-value=1.4e-15  Score=130.10  Aligned_cols=122  Identities=21%  Similarity=0.262  Sum_probs=90.8

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+ +......+++.++++.||..     +||++.+||++++..+|..++.|.... +    +   .  ...+
T Consensus        94 ~~~~l~~~l~-~~~~~l~~~~~~~~~~Ys~~-----lKr~~~~~~~~vg~~~G~~~~~g~~~~-~----~---~--~~~~  157 (279)
T PRK09573         94 VGLILSIFIN-IYAFLIALLNSILLYLYAKD-----LKKTGLIGNLIVAYLTGLSFIFGGLAV-F----N---V--LRII  157 (279)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH-----HhcCCcHHHHHHHHHHHHHHHHHHHHH-c----c---c--hHHH
Confidence            3555666556 44444556778889999943     499998999999999997777776432 2    1   1  1223


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV  139 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~  139 (199)
                      ......++++.++++.||.||+|+|+++|+||+|+++|+|++.+++............
T Consensus       158 ~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~  215 (279)
T PRK09573        158 ILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP  215 (279)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3445566778899999999999999999999999999999999998777666544443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.69  E-value=2.5e-15  Score=128.50  Aligned_cols=115  Identities=25%  Similarity=0.388  Sum_probs=84.6

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..|. ........+.+.++.||.+     +||++.+||+.++..+|..++.|....      +.   .+...+
T Consensus        94 ~g~~l~~~~~~-~~~~~~~~~~~~~~~Y~~~-----~k~~~~lg~~~vg~~~g~~~~~g~~a~------~~---~~~~~~  158 (277)
T PRK12883         94 VGLALAYLINI-EAFLFALGAYVLMFLYAWK-----LKPLPFIGNVVVALLTGATPIYGAIAV------GR---IGLAGY  158 (277)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc-----ccCCcchhhHHHHHHHHHHHHHHHHHh------cc---ccHHHH
Confidence            46677777664 4444456778889999954     489888899999999996556665321      11   112222


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLL  132 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~  132 (199)
                      .. ...++++.++++.||+||+|+|+++|+||+|+++|+|++.+++.....
T Consensus       159 ~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~  208 (277)
T PRK12883        159 LA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGV  208 (277)
T ss_pred             HH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHH
Confidence            22 335666789999999999999999999999999999999998765543

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.69  E-value=1.2e-15  Score=130.97  Aligned_cols=107  Identities=22%  Similarity=0.324  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcC
Q 029089           20 IIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKD   99 (199)
Q Consensus        20 ~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   99 (199)
                      +..++.++.||.  ||+|+|++|+.+..+.+. +..+.. +.|+. +++      ..+...++.  ..++++.+++++||
T Consensus       120 l~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~-~~~~~~-~~y~~-~tg------~~~~~~l~~--a~~l~~~~~~~in~  186 (282)
T PRK12875        120 LAFLVLSVEYSA--PPLRFKTTPVLDSLSNGL-YILPGV-AAYAL-VSG------SLPPLLAVA--GGWLWAMGMHTFSA  186 (282)
T ss_pred             HHHHHHHHHHcC--CCccchhccHHHHHHHHH-HHHHHH-HHHHH-HcC------CCcHHHHHH--HHHHHHHHHHHHHh
Confidence            456889999996  999999999755443333 223333 43432 221      122232222  24677899999999


Q ss_pred             CCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHH
Q 029089          100 LPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV  139 (199)
Q Consensus       100 i~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~  139 (199)
                      +||+|+|++.|+||+|+++|+|++.+++..+...+-...+
T Consensus       187 i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~  226 (282)
T PRK12875        187 IPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA  226 (282)
T ss_pred             ccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888777643333

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.69  E-value=1.9e-15  Score=129.58  Aligned_cols=163  Identities=15%  Similarity=0.124  Sum_probs=110.4

Q ss_pred             hhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHH
Q 029089            4 VAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFA   83 (199)
Q Consensus         4 l~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   83 (199)
                      +.++...+.+... ....+.++.+.|+. +     ||+..++++..+...+.++..|...  ++   +. .+.....+..
T Consensus        97 ~~~~~~l~~~~~~-l~~~~~~~~~~Y~~-~-----Kr~~~~~~~~~g~~~~~~~~~g~~a--~~---g~-~~~~~~~~ll  163 (282)
T TIGR01475        97 LSASYFLNPLAFI-LSPLVLLVLIIYPY-T-----KRFTFLCHYVLGSTYGLAPLAGWVA--VI---GT-ISFFLVAWLL  163 (282)
T ss_pred             HHHHHHHhHHHHH-HHHHHHHHHHHHhh-H-----hccccccHHHHHHHHHHHHHHHHHH--Hh---CC-ccchHHHHHH
Confidence            3444444533333 33456667889983 3     9988899999999999777777543  21   11 1111233444


Q ss_pred             HHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 029089           84 AAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAA  163 (199)
Q Consensus        84 ~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~  163 (199)
                      ....++++.+.+.+||.||+|+|++.|+||+|+++|+|++.+.+......++......+......+...   ....+...
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~---~~~~~~~~  240 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIAL---LALILIGL  240 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH---HHHHHHHH
Confidence            566788899999999999999999999999999999999999988888887766666655543322221   22223334


Q ss_pred             HHHHHhhhcCCCCchHHHH
Q 029089          164 LLWRKAQTVDLTDPPSMQS  182 (199)
Q Consensus       164 ~l~~~~~~~d~~~~~~~~~  182 (199)
                      .+..+.+..|.+++++.++
T Consensus       241 ~l~~~~~~~~~~~~~~~~~  259 (282)
T TIGR01475       241 ILAYEHYIVDPGDQSKIQR  259 (282)
T ss_pred             HHHHHHHHcCCCCHHHHHH
Confidence            4566677788777665443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.68  E-value=2.3e-15  Score=129.32  Aligned_cols=168  Identities=11%  Similarity=0.107  Sum_probs=115.5

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+ +.....++++.++++.||. .     ||+..++++..++.++.++..|...  ++   +   ..+...+
T Consensus       104 ~~~~l~~~~~-~~~~~~~~~~~~~~~~Y~~-~-----Kr~~~~~~~~~g~~~~~~~l~~~~a--~~---g---~~~~~~~  168 (285)
T PRK12847        104 IALVILLLLN-KTTIYLSFIAVILIVLYPL-M-----KRFFYWPQLFLGFTFNMGILMAFAA--VQ---N---QLDIEAI  168 (285)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHHHhccc-c-----ccCCcccHHHHHHHHHHHHHHHHHH--Hc---C---CCcHHHH
Confidence            4556666665 5556666788888999983 3     8877789999999988666556433  21   1   1234445


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      +.....++++.+.+.++|++|+|+|+++|+||+|+++|+|++.+++.......++..+.....+..++.....    ++.
T Consensus       169 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~----~~~  244 (285)
T PRK12847        169 LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAI----LAA  244 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH----HHH
Confidence            5556778889999999999999999999999999999999999999888888777666555544333222211    122


Q ss_pred             HHHHHHHhhhcCCCCch-HHHHHHHHHH
Q 029089          162 AALLWRKAQTVDLTDPP-SMQSFYMFIF  188 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~-~~~~~y~~~w  188 (199)
                      ...++++.+.+|.++++ ..+.|+.-.+
T Consensus       245 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~  272 (285)
T PRK12847        245 AGIFYYQYKLLDFDNPANCMYAFKANHY  272 (285)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHhHH
Confidence            23445555677777654 3444444333

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.67  E-value=5.9e-15  Score=126.91  Aligned_cols=174  Identities=20%  Similarity=0.322  Sum_probs=123.6

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+.+.+. ....+.++.+.| ..+     ||.+.+++++.+.+++.....|.... .    +.   .+.+.+
T Consensus       106 ~~~~~a~~l~~~~~~-l~~~~~~l~~~Y-~~~-----Kr~~~~~~~~lg~~~~~~~~~g~~a~-~----~~---~~~~~~  170 (289)
T COG0382         106 LGLALALLLNPLAFL-LSLAALVLALAY-PFL-----KRFTFLPQLVLGLAFGLGALAGAAAV-G----GS---LPLLAW  170 (289)
T ss_pred             HHHHHHHHHhHHHHH-HHHHHHHHHHHH-HHh-----hcCCchHHHHHHHHHHHHHHHHHHHH-h----Cc---cchHHH
Confidence            467778777865544 456788899999 334     99999999999999998887786542 1    11   234555


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      +..+..++++.++++.||++|+|+||++|+||+|+.+|+|++..++........ .....+.......  ........+.
T Consensus       171 ~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~  247 (289)
T COG0382         171 LLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASA-LLVLLGLLAGLLG--LIYLLGLLVA  247 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHH-HHHHHHHHHhhch--HHHHHHHHHH
Confidence            666788889999999999999999999999999999999999999988874432 2222222221111  1333455555


Q ss_pred             HHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh
Q 029089          162 AALLWRKAQTVDLTDPPSMQSFYMFIFKASGS  193 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~  193 (199)
                      ...+.++....|.++++...+++..-...-.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (289)
T COG0382         248 ALLLLYQILIVDVRDPPACFALFDVNLLLGLL  279 (289)
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHhhHHHHH
Confidence            66667877888777777777766655544333

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.64  E-value=3.4e-14  Score=122.16  Aligned_cols=163  Identities=13%  Similarity=0.113  Sum_probs=108.4

Q ss_pred             hhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHH
Q 029089            4 VAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFA   83 (199)
Q Consensus         4 l~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   83 (199)
                      +.++...+..... ...++++....|+- .     ||...++++..++..+.++..|.+.  ++   + .  .+...++.
T Consensus       100 l~l~~~l~~~~~~-l~~~~~~~~~~Y~~-~-----Kr~t~~~~~~lg~~~~~~~l~g~~a--~~---g-~--~~~~~~ll  164 (284)
T PRK12888        100 LGAAALLNPLCLA-LAPLAVAPLVVYPY-A-----KRFTNFPHAILGLAQAVGPVGAWIA--VT---G-T--WSWPAVLL  164 (284)
T ss_pred             HHHHHHHhHHHHH-HHHHHHHHHHHHHH-h-----hcccchhhHHHHHHHHHHHHHHHHH--Hc---C-C--CCHHHHHH
Confidence            3344444533333 33455556677862 3     8888899999999998776667432  21   1 1  23344455


Q ss_pred             HHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 029089           84 AAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAA  163 (199)
Q Consensus        84 ~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~  163 (199)
                      ....++++.+.+++|+++|+|+|++.|+||+|+++|+|++.+++..+....++.....+......+...   .+-.+.+.
T Consensus       165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---~~~~~~~~  241 (284)
T PRK12888        165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---IGLAITAG  241 (284)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHH
Confidence            567788899999999999999999999999999999999998877777666655555555443322221   12224445


Q ss_pred             HHHHHhhhcCCCCch-HHHHHH
Q 029089          164 LLWRKAQTVDLTDPP-SMQSFY  184 (199)
Q Consensus       164 ~l~~~~~~~d~~~~~-~~~~~y  184 (199)
                      .+.++.+.+|.++++ ..++|+
T Consensus       242 ~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        242 AFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHHHHHHcCccCHHHHHHHHH
Confidence            556677778888754 445755

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.64  E-value=2e-14  Score=123.40  Aligned_cols=118  Identities=11%  Similarity=0.108  Sum_probs=87.7

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+ +......+++.++.+.||. .     ||+..++++..++.++.++..|.+.  .+   +   ..+...+
T Consensus        99 ~~~~l~~~l~-~~~~~l~~~~~~~~~~Y~~-~-----Kr~~~~~~~~~g~~~~~~~~~g~~a--~~---g---~~~~~~~  163 (281)
T TIGR01474        99 VALGVLLQLN-PLTILLGVASLALVATYPF-M-----KRITYWPQLVLGLAFGWGALMGWAA--VT---G---DLSTAAW  163 (281)
T ss_pred             HHHHHHHHhh-HHHHHHHHHHHHHHHHhch-h-----cccccccHHHHHHHHHHHHHHHHHH--Hc---C---CCcHHHH
Confidence            4667777666 4445556778889999983 4     8888899999999999777778542  21   2   1233334


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~  134 (199)
                      ......++++.+.+..||++|+|+|++.|+||+|+++|+|++...........
T Consensus       164 ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~  216 (281)
T TIGR01474       164 VLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMI  216 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHH
Confidence            44456778899999999999999999999999999999998766544444333

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.60  E-value=4.7e-14  Score=122.18  Aligned_cols=171  Identities=15%  Similarity=0.177  Sum_probs=109.9

Q ss_pred             hHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCC--cchHHHHH
Q 029089            5 AMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPV--VFPKQLLF   82 (199)
Q Consensus         5 ~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~--~~~~~~~~   82 (199)
                      .++...+....... ..+.+....|+. .     ||+..++++..+..++..+..|....  ++....+.  ..+...++
T Consensus       111 ~~~~~ln~~~~~l~-~~~~~~~~~Y~~-~-----KR~t~~~~~~lg~~~~~~~~~G~~a~--~g~~~~~~~~~l~~~~~~  181 (300)
T PRK13106        111 ASAYLVNRWALLLS-PIVALIAMSYPY-M-----KRYTAFANYHLASIQGLAVFSGAVAV--LGLYANSLIQVLLRVPWL  181 (300)
T ss_pred             HHHHHHhHHHHHHH-HHHHHHHHHHhH-H-----hcCCcchHHHHHHHHHHHHHHHHHHH--cCCcccchhhhhhHHHHH
Confidence            33444454444333 345556777873 4     99999999999999997777776432  11111000  11122233


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 029089           83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALA  162 (199)
Q Consensus        83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (199)
                      .....++++.+++++||.+|+|+|++.|+||+|+++| |++.+++..+...+.......+......+...   .+-.+..
T Consensus       182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~---~~~~~~~  257 (300)
T PRK13106        182 FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAI---AATILHG  257 (300)
T ss_pred             HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHH
Confidence            3445678899999999999999999999999999999 88999888777776555555544443322211   1112333


Q ss_pred             HHHHHHhhhcCCCCchHHHHHHHHHHH
Q 029089          163 ALLWRKAQTVDLTDPPSMQSFYMFIFK  189 (199)
Q Consensus       163 ~~l~~~~~~~d~~~~~~~~~~y~~~w~  189 (199)
                      ..+.++.+..|.+ ++..+.|.+..|.
T Consensus       258 ~~l~~~~~~~~~~-~~~~~~F~~n~~i  283 (300)
T PRK13106        258 LIMAYAYYLASKK-GDFGRAFYYNIYS  283 (300)
T ss_pred             HHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence            4445666677777 7777888776654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.59  E-value=1.5e-13  Score=118.55  Aligned_cols=128  Identities=19%  Similarity=0.140  Sum_probs=92.9

Q ss_pred             hhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHH
Q 029089            4 VAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFA   83 (199)
Q Consensus         4 l~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   83 (199)
                      +.++...+.+.... ..++.+....||. .     ||+..++++..++..+.++..|.+.  ++   + .  .+.+.++.
T Consensus       103 ~~l~~~~~~~~~~l-~~~~~~~~~~Y~~-~-----Kr~t~~~~~~~g~~~~~~~l~g~~a--~~---g-~--~~~~~~ll  167 (291)
T PRK12886        103 LFAAWFLNPLCLYL-SPPALFFLLLYSY-C-----KRFTALAHVVLGFCLALAPLGAWIA--IR---G-T--IELPAILL  167 (291)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHhh-h-----hccccccHHHHHHHHHHHHHHHHHH--Hc---C-C--CcHHHHHH
Confidence            33444456444443 3456667889994 4     9999899999999988776666432  22   1 1  22344455


Q ss_pred             HHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 029089           84 AAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSP  146 (199)
Q Consensus        84 ~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~  146 (199)
                      ....++++.+.++.++++|+|+|++.|+||+|+++|+|++.++........+...+..+..+.
T Consensus       168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (291)
T PRK12886        168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAG  230 (291)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566788889999999999999999999999999999999999887777777666666655543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.56  E-value=2.8e-13  Score=116.90  Aligned_cols=118  Identities=21%  Similarity=0.233  Sum_probs=86.9

Q ss_pred             hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHH
Q 029089            3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLF   82 (199)
Q Consensus         3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~   82 (199)
                      |+.+++.++....... +..++....||- .     ||+..++++..++..+.+++.|....  +   + .  .+...++
T Consensus       107 ~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~-~-----KR~t~~~~~~~g~~~~~~~l~G~~av--~---g-~--~~~~~~~  171 (291)
T PRK12874        107 FIGVSYFINPLAFKLS-FPFLIVLGGYSY-F-----KRFSSLAHLVLGLSLGLAPIAGVVAV--L---G-E--IPLWSVF  171 (291)
T ss_pred             HHHHHHHHhHHHHHHH-HHHHHHHHHHhh-h-----cccccccHHHHHHHHHHHHHHHHHHH--c---C-C--CcHHHHH
Confidence            4455555565544443 456667888983 4     99888999999999998888886532  1   1 1  2223334


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089           83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY  135 (199)
Q Consensus        83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y  135 (199)
                      .....++++.+.+.+++++|+|+|++.|++|+|+++|+|++.+..........
T Consensus       172 l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~  224 (291)
T PRK12874        172 LALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAV  224 (291)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHH
Confidence            44667889999999999999999999999999999999999987655554443

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.56  E-value=1.6e-13  Score=118.10  Aligned_cols=169  Identities=15%  Similarity=0.068  Sum_probs=108.9

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+...+... ..+.. ...|+..+     ||...++++..+...|.++..|... .     +.+..+....+
T Consensus        96 ~~~~~~~~ln~l~~~l~-~~~~~-l~~~yp~~-----KR~t~~~~~~lG~~~g~~~l~g~~A-v-----~g~~~~~~~~~  162 (286)
T PRK12895         96 IFEICTFLLNRLVFILS-PIVIF-LFIIDPFL-----KRYTAWRHIYMGSIIGLGVLAGYLA-V-----IPAFPYNLLIY  162 (286)
T ss_pred             HHHHHHHHHhHHHHHHH-HHHHH-HHHHHHHH-----HhCccccHHHHHHHHHhHHHHHHHH-H-----cCCCCchHHHH
Confidence            35556666665444432 33333 34455334     9999999999999999777777542 1     21122222333


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      +.....++++.+.+++++.+|+|+|++.|+||+|+++|+|++.++...+...+.......+.....+    ..-.+-.+.
T Consensus       163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~~~----~y~~~~~~~  238 (286)
T PRK12895        163 IIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIRTL----WYLAALIII  238 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHH
Confidence            4456678889999999999999999999999999999999999877666666544444444333211    111233344


Q ss_pred             HHHHHHHhhhcCCCCchHH-HH-HHHHH
Q 029089          162 AALLWRKAQTVDLTDPPSM-QS-FYMFI  187 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~~~-~~-~y~~~  187 (199)
                      +..+.++.+.+|++++++. .+ |.+.-
T Consensus       239 ~~~l~~q~~~~~~~~~~~~~~~~F~~N~  266 (286)
T PRK12895        239 YTLVIYQHLIIDPRNPINKRMSFFNANS  266 (286)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence            5555777788888886665 54 44433

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.55  E-value=3.7e-13  Score=116.01  Aligned_cols=169  Identities=15%  Similarity=0.096  Sum_probs=113.4

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+.+..++.... ...++.+....||.      .||+..++++..++..+.++..|...  .+   +. .+. ....
T Consensus       104 ~~~~~~~~l~~~~~~-l~~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~a--v~---g~-~~~-~~~~  169 (289)
T PLN02809        104 LGLGILLQLNNYSRI-LGASSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGALLGWAA--VK---GS-LDP-AVVL  169 (289)
T ss_pred             HHHHHHHHHhHHHHH-HHHHHHHHHHHHhH------HHhcCcchHHHHHHHHHHHHHHHHHH--Hh---CC-CCh-HHHH
Confidence            355566666654444 44567778889983      49999999999999988777777532  11   21 111 1222


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      ......++++.+.+.+.+.+|+|+||+.|+||+|+++|+|+..+++ .+...++......+......+.   .-.++...
T Consensus       170 ~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~  245 (289)
T PLN02809        170 PLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGWP---YYAGLAAA  245 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHH---HHHHHHHH
Confidence            2334456678888999999999999999999999999999777766 4555556555555544322211   12356667


Q ss_pred             HHHHHHHhhhcCCCCchHH-HHHHHHHH
Q 029089          162 AALLWRKAQTVDLTDPPSM-QSFYMFIF  188 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~~~-~~~y~~~w  188 (199)
                      +..++++.+.+|.+++++. +.|.+..|
T Consensus       246 ~~~l~~~~~~v~~~~~~~~~~~F~~n~~  273 (289)
T PLN02809        246 AGHLAWQIQTVDLSSRADCNRKFVSNKW  273 (289)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHhCCH
Confidence            7778899999999986655 44444443

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.54  E-value=4.4e-13  Score=116.84  Aligned_cols=163  Identities=13%  Similarity=0.067  Sum_probs=104.6

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+.+..| +.....++++.++.+.|+. .     ||+...++...++..+.++..|.+.  +++.      ++...+
T Consensus       131 ~g~~l~~~~~-~~~~~l~~~~~~~~~~Y~~-~-----KR~t~~~~~~~Gl~~~~~~l~g~~a--~~g~------~~~~~~  195 (314)
T PRK12878        131 VGLAVLLQFN-WFAIALGIASLAIVAAYPF-M-----KRITWWPQFFLGLAFSWGALMGWAA--HFGS------LSLAAV  195 (314)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-H-----HhcCCcchHHHHHHHHHHHHHHHHH--HhCC------CchHHH
Confidence            4566666655 5556666788888999983 3     7766678888888887766677432  3221      222334


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      ......++++.+.+.+++++|+|+|+++|+||+|+++|+|++.+++...........+.....+ ..+......+   ..
T Consensus       196 ~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~---~~  271 (314)
T PRK12878        196 LLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAG-VPLLALLGLL---AA  271 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH---HH
Confidence            4445667789999999999999999999999999999999999988655555543333322322 2222211111   11


Q ss_pred             HHHHHHHhhhcCCCCchHHHHH
Q 029089          162 AALLWRKAQTVDLTDPPSMQSF  183 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~~~~~~  183 (199)
                      ...+..+..++|.+++++.+++
T Consensus       272 ~~~l~~~~~~~~~~~~~~~~~~  293 (314)
T PRK12878        272 AAHLAWQIARLDIDDPDQCLRL  293 (314)
T ss_pred             HHHHHHHHHHcccCChHHHHHH
Confidence            2224556677776665554333

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.54  E-value=2.1e-13  Score=117.62  Aligned_cols=169  Identities=16%  Similarity=0.129  Sum_probs=104.9

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+..... ....+.+..+.|+. .     ||....+++..++.++.++..|...  ++   +   ..+...+
T Consensus       105 ~~~~l~~~l~~~~~~-l~~~~~~~~~~Y~~-~-----KR~t~~~~~~lg~~~~~~~l~g~~a--~~---g---~~~~~~~  169 (290)
T PRK12870        105 CAAGLAFFLNPLSFW-LCVAAVPVIFLYPL-A-----KRVFPVPQLVLAIAWGFAVLISWSA--VT---G---HLDLGTW  169 (290)
T ss_pred             HHHHHHHHHhHHHHH-HHHHHHHHHHHhhh-h-----hhccccceeeehHHHHhHHHHHHHH--Hc---C---CCCHHHH
Confidence            455666666644433 44567777889983 3     7777788999999998766666432  22   1   1223444


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      +.....++++.+.+..++++|+|+|+++|+||+|+++|+|++.++.........+.. ..+......+....   +-...
T Consensus       170 ~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~y~~---~~~~~  245 (290)
T PRK12870        170 LLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLA-ILGVLLELHLPFWI---GLAIA  245 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHH-HHHHHhCCcHHHHH---HHHHH
Confidence            555677889999999999999999999999999999999999887764333333222 23332222111111   11122


Q ss_pred             HHHHHHHhhhc--CCCCchHH-HHHHHHHHH
Q 029089          162 AALLWRKAQTV--DLTDPPSM-QSFYMFIFK  189 (199)
Q Consensus       162 ~~~l~~~~~~~--d~~~~~~~-~~~y~~~w~  189 (199)
                      ...+.++..++  |.++++.. +.|+...|.
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~  276 (290)
T PRK12870        246 AVLWARQYRRLRQANLPPLAYGQLFLQNVWI  276 (290)
T ss_pred             HHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence            33334455555  65666444 555555543

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.53  E-value=8.6e-13  Score=113.27  Aligned_cols=168  Identities=13%  Similarity=0.119  Sum_probs=105.3

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+. ......+.+.++.+.|+. .     ||+..++++..++.+|.++..|...  ++   +   ..+...+
T Consensus       101 ~~~~l~~~l~~-~~~~l~~~~~~~~~~Y~~-~-----Kr~~~~~~~~~g~~~g~~~~~g~~a--~~---~---~~~~~~~  165 (282)
T PRK12848        101 VAFLLVLTLNT-LTIWLSVAALALAWIYPF-M-----KRYTHLPQVVLGAAFGWGIPMAFAA--VQ---G---SVPLEAW  165 (282)
T ss_pred             HHHHHHHHHhH-HHHHHHHHHHHHHHHHHh-H-----HhcCcccHHHHHHHHHHHHHHHHHH--Hh---C---CCcHHHH
Confidence            34555665563 334445667778899962 3     7777789999999999766666542  22   1   1233444


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      +.....+++..+....++++|+|+|+++|+||+|+++|+|++.+.............+.....+ ..+...   ..-.+.
T Consensus       166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~---~~~~~~  241 (282)
T PRK12848        166 LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLG-LGWAYY---WGLLVA  241 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhc-CcHHHH---HHHHHH
Confidence            5556677788899999999999999999999999999999998876444433333322222222 111111   112234


Q ss_pred             HHHHHHHhhhcCCCCch-HHHHHHHHHH
Q 029089          162 AALLWRKAQTVDLTDPP-SMQSFYMFIF  188 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~-~~~~~y~~~w  188 (199)
                      ...+.++.+.+|.++++ ..+.|++..|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~F~~n~~  269 (282)
T PRK12848        242 AALFVYQQKLIRDREREACFKAFLNNNW  269 (282)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHhCcH
Confidence            44445666778877654 4455555444

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.48  E-value=3.6e-12  Score=110.19  Aligned_cols=170  Identities=14%  Similarity=0.164  Sum_probs=101.7

Q ss_pred             hhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchH--HHH
Q 029089            4 VAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPK--QLL   81 (199)
Q Consensus         4 l~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~--~~~   81 (199)
                      +.++...+...... ..+++++...||. .     ||+..++++.-++..+..+..|... ..    +.+..+..  ..+
T Consensus       108 ~~l~~~ln~l~~~l-~~~~~~~~~iY~~-~-----KR~t~~~~~vLGl~~~~~~l~~~~A-v~----~~~~~~~l~~~~~  175 (300)
T PRK12876        108 LSLCWLLNPLCFSL-AVLSTLLMIIYPY-T-----KRVTFLCHWILGLVYYLAILMNFFA-II----ETPLSFSLFCMAS  175 (300)
T ss_pred             HHHHHHHhHHHHHH-HHHHHHHHHHHHh-H-----hcCCchhHHHHHHHHHHHHHHHHHH-Hh----cCcccHHHHHHHH
Confidence            44455556444444 3566777789984 5     9999999999888888665556442 22    21111100  122


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL  161 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (199)
                      +.....++++.+.+++++.+|+|+||+.|+||+|+++|+|++.++......+..+..+..+......+..-..++.-...
T Consensus       176 lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~  255 (300)
T PRK12876        176 LWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTV  255 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            22345566778999999999999999999999999999999877776666655444444443332221111111111112


Q ss_pred             HHHHHHHhhhcCCCCchHHHHHHH
Q 029089          162 AALLWRKAQTVDLTDPPSMQSFYM  185 (199)
Q Consensus       162 ~~~l~~~~~~~d~~~~~~~~~~y~  185 (199)
                      .....++.+.+|.++++.+.++++
T Consensus       256 ~l~~~~~~~~~~~~~~~~~~~~F~  279 (300)
T PRK12876        256 ILKTIKHYSLIDKKKSTLEQKFFL  279 (300)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHH
Confidence            222345545556655555555443

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.48  E-value=9.1e-12  Score=106.80  Aligned_cols=119  Identities=15%  Similarity=0.243  Sum_probs=81.0

Q ss_pred             hhhHHHH-hccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            3 GVAMGMM-LRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         3 gl~l~~~-~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      |+.++.. .+............+..+.||.++     ||++. +|..++...|...++|.+.. ++   +   ..+...+
T Consensus        96 ~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~l-----Kr~~~-~~~~v~~~~g~~~~l~g~~a-~~---g---~~~~~~~  162 (279)
T PRK12869         96 GTALGFLLLGPLTALFIALGWFFYAVVYTIWL-----KPRTW-LNIVIGGFAGNAAALAGYAS-GT---G---SLDLEAV  162 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-----ccCCh-HHHHHHHHHHHHHHHHHHHH-Hh---C---CCCHHHH
Confidence            4444444 443332233334456778888544     99995 78888888884444454543 22   1   1233445


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~  134 (199)
                      +.....+++..+....++.+|+|.|+++|+||+|+++|+|++.+.+.....+.
T Consensus       163 ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~  215 (279)
T PRK12869        163 LLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALM  215 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHH
Confidence            55567778888888888999999999999999999999999998876665554

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.47  E-value=8.5e-12  Score=107.97  Aligned_cols=108  Identities=16%  Similarity=0.164  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccccCC----CchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHH
Q 029089           13 PPLVICFIIWWIVGAAYSLDLPLLRWKGS----PLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMP   88 (199)
Q Consensus        13 ~~ll~~~~~~~~~~~~YS~~lpplrlKr~----p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (199)
                      +..+..++.+.++++.|+.       ||+    | .+.+.-+...+.+++.|. .  ++   +   ..+...+....+.+
T Consensus       123 ~~~~~l~~~~~~~~~~Y~~-------~kr~~~~p-~~~l~G~~~~~~~~~~g~-~--~~---g---~~~~~~~ll~~~~~  185 (297)
T PRK12871        123 LYVFVIMLYSYGIEAFYQV-------KKRNQKYP-VAQLLGRTDFTLFPAAGY-L--CY---G---QPDMTALLYMVFFY  185 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhc-------cccccccc-HHHHHHHHHHHHHHHHHH-H--Hh---C---CCcHHHHHHHHHHH
Confidence            3455556677788889984       444    6 233222233344445552 2  21   2   12234445556778


Q ss_pred             HHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHH
Q 029089           89 IFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGA  137 (199)
Q Consensus        89 l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~  137 (199)
                      +++.+++..||++|+|+|+++|+||+|+++|+|++.+....+..+..+.
T Consensus       186 ~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~  234 (297)
T PRK12871        186 PWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLA  234 (297)
T ss_pred             HHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999998776666555433

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.40  E-value=9e-12  Score=107.16  Aligned_cols=111  Identities=11%  Similarity=0.141  Sum_probs=78.5

Q ss_pred             HHHHHHHHHh-----cCCCCCccccCCCchhHHHHHHHHHHHHHHHH--HHH-HHhhhhCCCCcchHHHHHHHHHHHHHH
Q 029089           20 IIWWIVGAAY-----SLDLPLLRWKGSPLMAAVTIIILNGLLLQFPY--FVH-FQKYVLGRPVVFPKQLLFAAAIMPIFN   91 (199)
Q Consensus        20 ~~~~~~~~~Y-----S~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~   91 (199)
                      +...++.+.|     +..+     ||.|+.||+.++...+.++..|.  +.. ......+.+ ......+...+..++.+
T Consensus       115 i~~~~i~~lY~~lm~a~~~-----K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~  188 (299)
T PRK13592        115 VGWFLFLYIYGTLMSFWFF-----KRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPS  188 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----cccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHH
Confidence            3456678888     7655     99999999999999997665551  110 011111211 11111134445677779


Q ss_pred             HHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHH
Q 029089           92 AAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAG  138 (199)
Q Consensus        92 ~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~  138 (199)
                      .+||+.||+|| |||++. .+|+|+++|+|++.++...+..++.+..
T Consensus       189 l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s  233 (299)
T PRK13592        189 LIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTN  233 (299)
T ss_pred             HHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHh
Confidence            99999999999 899865 9999999999999999999888765443

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.36  E-value=1.1e-10  Score=99.93  Aligned_cols=118  Identities=12%  Similarity=0.104  Sum_probs=72.9

Q ss_pred             hccHHHHHHHHHHHHH-HHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHH
Q 029089           10 LRSPPLVICFIIWWIV-GAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIM   87 (199)
Q Consensus        10 ~g~~~ll~~~~~~~~~-~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (199)
                      .+ +.......++.++ .+.||..+     ||++. .|..++...| .++..| |.. ++   +   ..+...++.....
T Consensus       103 ~~-~~~~~l~~~~~~~~~~~Yt~~l-----Kr~~~-~~~~v~~~~g~~~~l~g-~~a-~~---g---~~~~~~~~l~~~~  167 (280)
T TIGR01473       103 VN-PLAALLGLFGIFFYVIVYTIWL-----KRRTP-QNTVIGGFAGAVPPLIG-WAA-VT---G---SISLGAWLLFAII  167 (280)
T ss_pred             Hh-HHHHHHHHHHHHHHHhhcChhh-----ccCCc-hhHHHHHHHHHHHHHHH-HHH-hc---C---CCCHHHHHHHHHH
Confidence            45 4434444556654 78999544     99885 4667777777 444444 432 22   1   1223334444455


Q ss_pred             HHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHH
Q 029089           88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAG  142 (199)
Q Consensus        88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~  142 (199)
                      +++...-......+|+|.||++|+||+|+++|+|++.+................+
T Consensus       168 ~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (280)
T TIGR01473       168 FLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA  222 (280)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555543334457899999999999999999999998876655554433333333

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.31  E-value=2.6e-10  Score=98.63  Aligned_cols=97  Identities=12%  Similarity=0.089  Sum_probs=71.1

Q ss_pred             HHHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 029089           25 VGAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDV  103 (199)
Q Consensus        25 ~~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~Dv  103 (199)
                      ....||.+     +||++ .+|..++...+ .++..|.+.  ++   +   ..+...++.....+++..+....+.++|+
T Consensus       127 ~~~~Ys~~-----lKr~~-~~~~~v~~~~g~~~~l~g~~a--~~---g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~  192 (296)
T PRK04375        127 YVVVYTLW-----LKRRT-PQNIVIGGAAGAMPPLIGWAA--VT---G---SLSWEALILFLIIFLWTPPHFWALAIFRK  192 (296)
T ss_pred             HHHHhccc-----hhcCC-ccchHHHHHHHHhHHHHHHHH--hC---C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678843     49999 68988888877 666666543  21   1   12334445556778888888888889999


Q ss_pred             HhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089          104 EGDKEFGLRTLPIILGRERVFSIAVNMLLTAY  135 (199)
Q Consensus       104 egD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y  135 (199)
                      |.|+++|+||+|+++|+|++.+.+........
T Consensus       193 ~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~  224 (296)
T PRK04375        193 DDYAAAGIPMLPVVKGIRVTKRQILLYTVLLV  224 (296)
T ss_pred             hhHHHcCCCccceeeCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887655554443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.25  E-value=4.1e-10  Score=97.34  Aligned_cols=154  Identities=11%  Similarity=-0.011  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcC
Q 029089           20 IIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKD   99 (199)
Q Consensus        20 ~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   99 (199)
                      .++++....||- .     ||+-...++..++..+.++..|... . +   + ..++....++.....++++.+.+.+.+
T Consensus       124 ~~~~~~~~~Y~~-~-----KR~t~~~~~vlg~~~a~~~l~gw~A-v-~---g-~~~~~~~~l~l~~~~~~W~~~~d~iyA  191 (294)
T PRK12873        124 FLALPPILIYPS-A-----KRWFAYPQAILALCWGFAVLIPWAA-A-E---G-SLNGGWPLLFCWLATLLWTFGFDTVYA  191 (294)
T ss_pred             HHHHHHHHHHHH-H-----HhccccchHHHHHHHHhHHHHHHHH-H-h---C-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666788883 3     7777788999999999888777532 1 1   1 122222333434567888999999999


Q ss_pred             CCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCC---
Q 029089          100 LPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTD---  176 (199)
Q Consensus       100 i~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~d~~~---  176 (199)
                      ++|+|.|+++|++|+|+++|+ ++......+...........+......+...   .+-...+..+.++.+.+|.++   
T Consensus       192 ~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l~~~y~---~~~~~~~~~l~~~~~~~~~~~~~~  267 (294)
T PRK12873        192 MADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQVGFIFW---PFWLIASIGMQRDILKLFPEKQSI  267 (294)
T ss_pred             HHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHhCcCcccH
Confidence            999999999999999999997 4555555666555444444554443321111   111223344456666677665   


Q ss_pred             chHHHHHHHHHHH
Q 029089          177 PPSMQSFYMFIFK  189 (199)
Q Consensus       177 ~~~~~~~y~~~w~  189 (199)
                      ++..+.|++..|-
T Consensus       268 ~~c~~~F~~n~~~  280 (294)
T PRK12873        268 KTIGNHFSNQVIL  280 (294)
T ss_pred             HHHHHHHHhccHH
Confidence            4455778777764

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.24  E-value=1.2e-09  Score=94.90  Aligned_cols=94  Identities=14%  Similarity=0.171  Sum_probs=72.7

Q ss_pred             HHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCChH
Q 029089           25 VGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVE  104 (199)
Q Consensus        25 ~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~Dve  104 (199)
                      ....||..+     ||++..+++..++..+.++..|....      ++.  .+...++.....+++..+.....+++|+|
T Consensus       130 ~~~~Yt~~l-----Kr~t~~~~~vgg~~ga~p~l~G~~a~------~g~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~  196 (306)
T PRK13362        130 YVGVYSLYL-----KRNSVYGTLVGSLSGAMPPVVGYCAV------TGQ--FDAGALILLLMFSLWQMPHSYAIAIFRFN  196 (306)
T ss_pred             HHHHHhHHH-----hccCcHhHHHHHHHHHHHHHHHHHHH------cCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            467898445     99999999988888888888886532      111  23344555677888898888889999999


Q ss_pred             hhHHcCCcccceeechHhHHHHHHHHH
Q 029089          105 GDKEFGLRTLPIILGRERVFSIAVNML  131 (199)
Q Consensus       105 gD~~~G~~Tl~v~lG~~~a~~l~~~l~  131 (199)
                      .|+++|++|+|++.|+|++.+......
T Consensus       197 Dy~~aG~~~lpv~~G~~~t~~~~~~~~  223 (306)
T PRK13362        197 DYAAAGIPVLPVARGIAKTKLHIVLYI  223 (306)
T ss_pred             hHHHCCCeeeceecChHHHHHHHHHHH
Confidence            999999999999999999988544433

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=98.40  E-value=1.3e-07  Score=78.60  Aligned_cols=155  Identities=18%  Similarity=0.192  Sum_probs=99.7

Q ss_pred             HHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCChH
Q 029089           25 VGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVE  104 (199)
Q Consensus        25 ~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~Dve  104 (199)
                      ..++|+   ..+.+|... +|++.+-+.+|++.++-.|. .|++-..    +. +...+ .+..+-+-++...||.||.|
T Consensus       187 ~sflyt---ggigfkyia-lgdliili~fgpiavlfaf~-~q~g~l~----~~-~l~ya-iplalnteailhsnntrd~d  255 (359)
T KOG4581|consen  187 GSFLYT---GGIGFKYIA-LGDLIILILFGPIAVLFAFA-IQTGHLA----IF-PLGYA-IPLALNTEAILHSNNTRDAD  255 (359)
T ss_pred             cceeEe---cccceEEEe-ccCEEEEEeechHHHHHHHH-HhcCcee----EE-eehhe-eeeccchHHHhccCCCcccc
Confidence            445677   455778887 69999988998554444332 4543222    11 11122 33445577889999999999


Q ss_pred             hhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHH
Q 029089          105 GDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQT-VDLTDPPSMQSF  183 (199)
Q Consensus       105 gD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~d~~~~~~~~~~  183 (199)
                      .||++|+-|+++.+|+..+-.++..++..+|....+.+.-+...   ..+.+...+.+.-+=+|.|+ ...+.-++-+.-
T Consensus       256 ndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~---~~lplltip~afqiek~frneqa~~~lp~qtak  332 (359)
T KOG4581|consen  256 NDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSIS---FALPLLTIPMAFQIEKQFRNEQAFHKLPQQTAK  332 (359)
T ss_pred             cccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHhhchhHHhHHHHhhhHhhhhhcchhhhh
Confidence            99999999999999999999999999999998887766554322   22333444444444344332 112333344444


Q ss_pred             HHHHHHHHHh
Q 029089          184 YMFIFKASGS  193 (199)
Q Consensus       184 y~~~w~lf~~  193 (199)
                      -.|+..+||+
T Consensus       333 ln~~~gi~yv  342 (359)
T KOG4581|consen  333 LNFFFGIFYV  342 (359)
T ss_pred             HHHHHHHHHH
Confidence            5566666664

>PLN02776 prenyltransferase

Probab=97.85  E-value=0.0037  Score=55.32  Aligned_cols=95  Identities=13%  Similarity=0.050  Sum_probs=57.1

Q ss_pred             HHHHHH-HHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 029089           20 IIWWIV-GAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFS   97 (199)
Q Consensus        20 ~~~~~~-~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   97 (199)
                      ..+.++ ...||. +     ||+..+ |..++...| .++..|....      .+.  ++...+++...+++|...=-..
T Consensus       106 ~~~~~ly~~vYt~-l-----KR~t~~-~~~lG~~~Ga~ppL~Gw~Av------tg~--~~~~~~~Lf~~~~~Wq~pHf~~  170 (341)
T PLN02776        106 AGNILLYAFVYTP-L-----KQIHPA-NTWVGAVVGAIPPLMGWAAA------SGQ--LDAGAMVLAAALYFWQMPHFMA  170 (341)
T ss_pred             HHHHHHHHHHHHh-H-----ccCCch-hHHHHHHHHHHHHHHHHHHH------cCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence            333443 457883 4     998855 679999998 7777776432      111  2233344445556665422222


Q ss_pred             cCCCChHhhHHcCCcccceee--chHhHHHHHHH
Q 029089           98 KDLPDVEGDKEFGLRTLPIIL--GRERVFSIAVN  129 (199)
Q Consensus        98 ~di~DvegD~~~G~~Tl~v~l--G~~~a~~l~~~  129 (199)
                      =...|.|-|++.|++.+|+.-  |++.+..+...
T Consensus       171 la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~  204 (341)
T PLN02776        171 LAYMCRDDYAAGGYRMLSLADATGRRTALVALRN  204 (341)
T ss_pred             HHHHhHHHHHhCCCcccCccccchHHHHHHHHHH
Confidence            234566789999999999866  45555555433

>PRK08238 hypothetical protein; Validated

Probab=97.39  E-value=0.011  Score=54.70  Aligned_cols=93  Identities=23%  Similarity=0.334  Sum_probs=67.2

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL   81 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (199)
                      +|+.+++..+ +......+..++...+||.++     ||++.+++++.+..++..++.|....      +  .  +.+.|
T Consensus       285 ~~~~l~~~l~-~~~~~~~~~~~~~~~~Ys~~l-----Kr~~~~~~~~la~~~~lr~~~G~~a~------~--~--~~s~w  348 (479)
T PRK08238        285 AGLALALALG-PAFLLVLLAYLALTLAYSLRL-----KRKVLVDVLTLAALYTLRIIAGAAAI------G--V--ALSFW  348 (479)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHHHHhhHHh-----cCCccccchHHHHHHHHHHHHHHHHh------c--c--CHHHH
Confidence            4666777666 455555566777888999545     99999999999999998888885421      2  1  23334


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCC
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGL  111 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~  111 (199)
                      +. .+.+++...+++.|...|+++|++.|.
T Consensus       349 ll-~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        349 LL-AFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            43 233444778899999999999999986

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=96.89  E-value=0.0049  Score=53.51  Aligned_cols=55  Identities=22%  Similarity=0.346  Sum_probs=40.5

Q ss_pred             chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 029089            2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYF   62 (199)
Q Consensus         2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~   62 (199)
                      +|+.+++..+ +.........++..++||.++     ||+|.+++++++..++..+..|..
T Consensus       105 ~~l~la~~l~-~~~~~~~~~~~~~~~~Ys~~l-----K~~~~~d~l~va~~~~lr~~~G~~  159 (295)
T PRK12324        105 ASLALAYLLS-PKLALVLLVYLVLNLAYSFKL-----KHQPVLDVFCIASGFVLRAIAGGV  159 (295)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHh-----cCCchhhHHHHHHHHHHHHHHHHH
Confidence            3556666555 344444456777889999544     999999999999999988877764

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.043  Score=47.71  Aligned_cols=92  Identities=16%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             HHHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 029089           25 VGAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDV  103 (199)
Q Consensus        25 ~~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~Dv  103 (199)
                      =...||.++     ||+.. =|..++-.-| .|+.+|....      .+..+  ...+...+.+|+|.-.=--.=.+.-.
T Consensus       135 Yv~vYT~~l-----KR~T~-~NiviGg~aGa~PpliGwaAv------tg~~~--~~a~~Lf~IiF~WtPpHfwALAl~~~  200 (304)
T COG0109         135 YVVVYTLWL-----KRRTP-QNIVIGGFAGAMPPLIGWAAV------TGSIS--LGAILLFAIIFLWTPPHFWALALKYK  200 (304)
T ss_pred             Hhhhhhhhc-----cCCcc-cceeeeeccccccccceeeee------eCCCC--chHHHHHHHHHHhccHHHHHHHHHHH
Confidence            456799878     99884 5667777776 7888886431      11122  23333444556653111111112223


Q ss_pred             HhhHHcCCcccceeechHhHHHHHHHH
Q 029089          104 EGDKEFGLRTLPIILGRERVFSIAVNM  130 (199)
Q Consensus       104 egD~~~G~~Tl~v~lG~~~a~~l~~~l  130 (199)
                      |.=+++|+.-+|+.-|++.+.+-...-
T Consensus       201 ~DY~~AgiPMlPvv~G~~~t~~~I~~y  227 (304)
T COG0109         201 DDYKAAGIPMLPVVKGERRTKRQILLY  227 (304)
T ss_pred             HHHHHcCCCcccccccHHHHHHHHHHH
Confidence            344789999999999999999865433

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=94.79  E-value=0.14  Score=44.07  Aligned_cols=98  Identities=15%  Similarity=0.065  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 029089           88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWR  167 (199)
Q Consensus        88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  167 (199)
                      ..++..-..+-.=+|.+-|.+.|+++.+.|+|++.-.++.. +-..........+..+...+..  .+. -...+.-+.+
T Consensus       234 v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q~~py--y~~-lg~~~~~L~~  309 (353)
T KOG1381|consen  234 VCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQTWPY--YAA-LGAVAARLGS  309 (353)
T ss_pred             hhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCCCchH--HHH-HHHHHHHHHh
Confidence            34566666677789999999999999999999988777653 3333333444556665543321  111 2344555677


Q ss_pred             HhhhcCCCCch-HHHHHHHHHHH
Q 029089          168 KAQTVDLTDPP-SMQSFYMFIFK  189 (199)
Q Consensus       168 ~~~~~d~~~~~-~~~~~y~~~w~  189 (199)
                      +-..+|.++++ ..+.|....|-
T Consensus       310 ~i~~vdiDnp~dC~k~f~sN~nt  332 (353)
T KOG1381|consen  310 QIYKVDIDNPSDCWKKFKSNSNT  332 (353)
T ss_pred             heeeeecCChHHHHHHHHhcCcc
Confidence            88899998844 55666666654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=93.94  E-value=0.56  Score=40.27  Aligned_cols=52  Identities=25%  Similarity=0.144  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHhhHHcCC---cccceeec-hHhHHHHHHHHHHH
Q 029089           82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLPIILG-RERVFSIAVNMLLT  133 (199)
Q Consensus        82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~v~lG-~~~a~~l~~~l~~~  133 (199)
                      +.....+....+...+||+.|+|-||++-+   |.+|.--- +|.+..+...+..+
T Consensus        51 l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~  106 (289)
T COG0382          51 LAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLL  106 (289)
T ss_pred             HHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            333445556788899999999999999887   44554333 33344433333333

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=93.91  E-value=0.84  Score=38.81  Aligned_cols=49  Identities=18%  Similarity=0.154  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeec---hHhHHHHHHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILG---RERVFSIAVNMLLTA  134 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG---~~~a~~l~~~l~~~~  134 (199)
                      +..++...+-..+||+-|.|-|+++ +++=|..-|   +|.+......+..++
T Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~   95 (279)
T PRK12884         44 LTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILG   95 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3345556777899999999999998 677777767   455555554444443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=93.49  E-value=3.5  Score=35.99  Aligned_cols=55  Identities=11%  Similarity=0.086  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHH
Q 029089           79 QLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~  134 (199)
                      .........++...+-.++||..|+|-||.+. ..=|+   +.-+|.+......+...+
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~-P~RPLPsG~VS~~~A~~~si~L~~~~  104 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLF-PHRALPSGRVKKKDLAIALSFIVAVS  104 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC-CCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence            33333344555577788999999999997654 33343   344566665555554444

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=93.00  E-value=1.6  Score=37.80  Aligned_cols=44  Identities=20%  Similarity=0.095  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCC-cccceeec---hHhHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGL-RTLPIILG---RERVFSIAV  128 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v~lG---~~~a~~l~~  128 (199)
                      +..++...+-..+||+-|+|=|+++.+ ++=|..=|   ++.+..+..
T Consensus        52 ~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~   99 (289)
T PLN02809         52 CGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLG   99 (289)
T ss_pred             HHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence            344555777789999999999998765 45666666   444444333

>PRK11383 hypothetical protein; Provisional

Probab=92.21  E-value=1.7  Score=33.80  Aligned_cols=84  Identities=13%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCcccc--CCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHH
Q 029089           17 ICFIIWWIVGAAYSLDLPLLRWK--GSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAA   93 (199)
Q Consensus        17 ~~~~~~~~~~~~YS~~lpplrlK--r~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   93 (199)
                      ..++.+.+..+.|-   +-.|-|  ..| ..++..+..|. .+..++.+..   +..+.+..++.......++...+-.+
T Consensus        46 ~vl~lglF~avs~Q---K~vRD~~egi~-vt~~f~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLFga  118 (145)
T PRK11383         46 AVLVLGLFSAASYQ---KTVRDKYEGIP-TTSIYYMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLFGA  118 (145)
T ss_pred             HHHHHHHHHHHHHH---HHHhhcccCCC-hhHHHHHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHHHH
Confidence            33445555555555   333555  667 46678888776 4444444332   33455556666666666666555678


Q ss_pred             HHHHcCCCChHhhH
Q 029089           94 IAFSKDLPDVEGDK  107 (199)
Q Consensus        94 ~~~~~di~DvegD~  107 (199)
                      +.+-||+||.+.++
T Consensus       119 i~vQKn~RD~~~~~  132 (145)
T PRK11383        119 VAVQKNIRDAGINP  132 (145)
T ss_pred             HHHHhhhhhhhhcc
Confidence            89999999996554

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=92.00  E-value=0.92  Score=39.43  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089           87 MPIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        87 ~~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~  134 (199)
                      .++...+...+||+-|.|-||++-+   |.+| -++.++.+..+...+..++
T Consensus        55 ~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~  106 (295)
T PRK12324         55 FCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS  106 (295)
T ss_pred             HHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence            3445677889999999999999622   3333 3456666666665555554

>PRK13595 ubiA prenyltransferase; Provisional

Probab=91.96  E-value=4.8  Score=35.02  Aligned_cols=48  Identities=25%  Similarity=0.103  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLT  133 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~  133 (199)
                      .+..-.+.....+||+-|.|-|+++-++ =++   ++.++.+..+...+...
T Consensus        54 ~~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~~~~  104 (292)
T PRK13595         54 YLTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAVLLL  104 (292)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHHHHH
Confidence            3344457788999999999999877654 333   45556555544444433

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=91.53  E-value=5  Score=34.07  Aligned_cols=49  Identities=18%  Similarity=0.121  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeec---hHhHHHHHHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILG---RERVFSIAVNMLLTA  134 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG---~~~a~~l~~~l~~~~  134 (199)
                      +..++...+-..+||+-|.|-|+++. ++=|..-|   +|.+......+..++
T Consensus        45 l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g   96 (276)
T PRK12882         45 AAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG   96 (276)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence            33445567778999999999999754 55555444   566665555555544

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=91.51  E-value=1.9  Score=37.45  Aligned_cols=52  Identities=15%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHcCCCChHhhHHcCC-cccce-eechHhHHHHHHHHHHHHHHH
Q 029089           86 IMPIFNAAIAFSKDLPDVEGDKEFGL-RTLPI-ILGRERVFSIAVNMLLTAYGA  137 (199)
Q Consensus        86 ~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v-~lG~~~a~~l~~~l~~~~y~~  137 (199)
                      ...+...+....||+-|.|-|++++. |.+|. ++.+|.+......+..++.+.
T Consensus        62 ~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~l  115 (306)
T TIGR02056        62 SGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAI  115 (306)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence            33555777899999999999997763 22322 455677776666555555333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=90.54  E-value=2.7  Score=35.76  Aligned_cols=27  Identities=26%  Similarity=0.145  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCC
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGL  111 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~  111 (199)
                      +..++...+....||..|.|-|+.+..
T Consensus        43 ~~~~~~~~~~~~~N~~~D~~~D~~n~~   69 (285)
T PRK12872         43 LITFLIAAAVYIINYLTDLEEDIINKP   69 (285)
T ss_pred             HHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence            445566778899999999999997654

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=89.76  E-value=5.6  Score=32.61  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHcCCCChHhhHHc-CCcccceeechHh
Q 029089           87 MPIFNAAIAFSKDLPDVEGDKEF-GLRTLPIILGRER  122 (199)
Q Consensus        87 ~~l~~~~~~~~~di~DvegD~~~-G~~Tl~v~lG~~~  122 (199)
                      .++........||.-|.|-|+.+ +++.-|..-|+-+
T Consensus        32 ~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   32 VFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            34557788899999999999996 3344444344333

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=89.25  E-value=3.9  Score=34.84  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~  134 (199)
                      +..++...+-..+||+-|.|-|+++. ++=|.   ++.+|.+......+..++
T Consensus        44 l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~   95 (279)
T PRK09573         44 LVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVG   95 (279)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHH
Confidence            34455577778999999999999764 33333   455677766666555554

>PRK08238 hypothetical protein; Validated

Probab=89.08  E-value=3.6  Score=38.15  Aligned_cols=51  Identities=24%  Similarity=0.235  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCC-cccc---eeechHhHHHHHHHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGL-RTLP---IILGRERVFSIAVNMLLTAY  135 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~---v~lG~~~a~~l~~~l~~~~y  135 (199)
                      +..++...+..++||+-|+|-||++-+ +.=|   =++..+.+..+...+..++.
T Consensus       233 ~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~  287 (479)
T PRK08238        233 LAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGL  287 (479)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            334556788899999999999999732 3334   35566667666666555553

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=88.47  E-value=8.2  Score=33.28  Aligned_cols=19  Identities=16%  Similarity=0.011  Sum_probs=16.1

Q ss_pred             HHHcCCCChHhhHHcCCcc
Q 029089           95 AFSKDLPDVEGDKEFGLRT  113 (199)
Q Consensus        95 ~~~~di~DvegD~~~G~~T  113 (199)
                      -.+||+-|.|.||++.+|.
T Consensus        62 y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875         62 YGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hcchhhhhhhccccCCCcc
Confidence            3479999999999988775

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=88.27  E-value=6.6  Score=33.56  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~  134 (199)
                      +..++...+-..+||+-|.|-|+++.+   |.+| -++.+|.+......+..++
T Consensus        43 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~   96 (279)
T PRK12869         43 IGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG   96 (279)
T ss_pred             HHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence            334455777799999999999998653   4444 3456666666555444443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=87.57  E-value=13  Score=31.58  Aligned_cols=46  Identities=15%  Similarity=0.062  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHcCCCChHhhHHcCCccccee---echHhHHHHHHHHHHHH
Q 029089           88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPII---LGRERVFSIAVNMLLTA  134 (199)
Q Consensus        88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v~---lG~~~a~~l~~~l~~~~  134 (199)
                      ++...+-..+||+-|.|-|+.+. ++=|..   +-+|.+......+..++
T Consensus        47 ~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~~g   95 (277)
T PRK12883         47 YLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFAVG   95 (277)
T ss_pred             HHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHHHH
Confidence            33356778999999999999754 555555   44566666555444443

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=87.41  E-value=5.2  Score=34.87  Aligned_cols=38  Identities=24%  Similarity=0.191  Sum_probs=25.2

Q ss_pred             HHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHH
Q 029089           96 FSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        96 ~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~  134 (199)
                      -+||+.|+|-|+.+ +++-|+   ++-+|.+..+...+..++
T Consensus        71 ~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~~~~la  111 (308)
T PRK12887         71 GLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVIITGILA  111 (308)
T ss_pred             HHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHHHHHHH
Confidence            39999999999965 477765   444555555554444443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=87.00  E-value=3.2  Score=35.40  Aligned_cols=46  Identities=17%  Similarity=0.057  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHH
Q 029089           88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~  134 (199)
                      .+...+-..+||+-|.|.|++++ ++=|+   ++-+|.+..+...+..++
T Consensus        48 ~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~   96 (283)
T TIGR01476        48 PLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG   96 (283)
T ss_pred             HHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            34466778999999999999765 33333   455666666665555444

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=85.90  E-value=3.9  Score=34.87  Aligned_cols=45  Identities=11%  Similarity=0.003  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcC---Ccccce-eechHhHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFG---LRTLPI-ILGRERVFSIAVN  129 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G---~~Tl~v-~lG~~~a~~l~~~  129 (199)
                      +..++...+-...||+-|.|-|+++.   .|.+|. ++.+|.+..+...
T Consensus        43 l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~   91 (282)
T TIGR01475        43 IAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL   91 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHH
Confidence            44556678888999999999999873   244443 4566666665543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=84.62  E-value=9.7  Score=33.60  Aligned_cols=46  Identities=30%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             HHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHHHHHHH
Q 029089           93 AIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTAYGAGV  139 (199)
Q Consensus        93 ~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~y~~~~  139 (199)
                      +-..+||+-|.|-|+.+. ||=|.   ++-+|.+......+..++.+...
T Consensus        65 a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~  113 (331)
T PRK12392         65 FSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGV  113 (331)
T ss_pred             HHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999765 44444   44577777777766666543333

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=84.43  E-value=5.9  Score=34.44  Aligned_cols=49  Identities=18%  Similarity=0.200  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCC-cccce---eechHhHHHHHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGL-RTLPI---ILGRERVFSIAVNMLLT  133 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~  133 (199)
                      +..++...+-..+||+-|.|-|+++.+ |.=|.   ++.++.+..+...+..+
T Consensus        51 ~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~  103 (294)
T PRK12873         51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLL  103 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            444556778889999999999998776 35554   44555555555444444

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.38  E-value=14  Score=31.91  Aligned_cols=49  Identities=27%  Similarity=0.116  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCCChHhhHHcCCc-ccce---eechHhHHHHHHHHHHHH
Q 029089           86 IMPIFNAAIAFSKDLPDVEGDKEFGLR-TLPI---ILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        86 ~~~l~~~~~~~~~di~DvegD~~~G~~-Tl~v---~lG~~~a~~l~~~l~~~~  134 (199)
                      ...+...+-..+||+-|.|=|+++.+. .=|.   ++.++.+..+...+..++
T Consensus        54 g~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~  106 (290)
T PRK12870         54 GALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCA  106 (290)
T ss_pred             HHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            344556777899999999999865432 3333   445555555554444443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=84.26  E-value=20  Score=30.91  Aligned_cols=50  Identities=10%  Similarity=0.051  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089           85 AIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        85 ~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~  134 (199)
                      ....+...+-..+||+-|.|-|+++.+   |.+| -++.+|.+..+...+..++
T Consensus        51 l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g  104 (296)
T PRK04375         51 LGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLG  104 (296)
T ss_pred             HHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            334445677789999999999998543   3333 3556677766655555443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.18  E-value=6  Score=33.84  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHcCCCChHhhHHcCC-cccce---eechHhHHHHHHHHHHHH
Q 029089           87 MPIFNAAIAFSKDLPDVEGDKEFGL-RTLPI---ILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        87 ~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~  134 (199)
                      .++...+-..+||+-|.|-|+++.+ ++=|.   ++-+|.+..+...+..++
T Consensus        54 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~  105 (285)
T PRK12847         54 SVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIA  105 (285)
T ss_pred             HHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            3455667789999999999987554 23343   445566655554444443

>PLN00012 chlorophyll synthetase; Provisional

Probab=83.82  E-value=12  Score=33.65  Aligned_cols=46  Identities=22%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHH
Q 029089           87 MPIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLT  133 (199)
Q Consensus        87 ~~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~  133 (199)
                      ..+...+-.++||+-|.|-|++++ ++=|+   ++.++.+......+...
T Consensus       132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~~  180 (375)
T PLN00012        132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLG  180 (375)
T ss_pred             HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHHH
Confidence            334456678999999999998875 33343   34455565544344333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=83.32  E-value=6.9  Score=33.48  Aligned_cols=48  Identities=17%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHcCCCChHhhHHcCC-cccce---eechHhHHHHHHHHHHHH
Q 029089           87 MPIFNAAIAFSKDLPDVEGDKEFGL-RTLPI---ILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        87 ~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~  134 (199)
                      ..+...+-...||+-|.|-|+++.+ +.=|.   ++.++.+..+...+..++
T Consensus        49 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~  100 (281)
T TIGR01474        49 AILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVA  100 (281)
T ss_pred             HHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            3444677789999999999997654 23343   344566665555444443

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13591 ubiA prenyltransferase; Provisional

Probab=82.80  E-value=24  Score=31.01  Aligned_cols=28  Identities=14%  Similarity=-0.095  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHcCCCChHhhHHcCCcccce
Q 029089           88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPI  116 (199)
Q Consensus        88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v  116 (199)
                      .+.+.+....||.-|+|.|+.+ +...|.
T Consensus        68 ~L~~~s~~~iNd~~D~eiD~IN-~P~r~~   95 (307)
T PRK13591         68 GLIIYSVYTLDRALDSEEDAVN-RSELIG   95 (307)
T ss_pred             HHHHHHHHHHhhhccchhhhcc-Cccccc
Confidence            4446788999999999999875 444444

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=81.89  E-value=33  Score=29.55  Aligned_cols=57  Identities=14%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHcCCCChHh-----hHHcCCcccce-eechHhHHHHHHHHHHHHHHHHHHHH
Q 029089           86 IMPIFNAAIAFSKDLPDVEG-----DKEFGLRTLPI-ILGRERVFSIAVNMLLTAYGAGVVAG  142 (199)
Q Consensus        86 ~~~l~~~~~~~~~di~Dveg-----D~~~G~~Tl~v-~lG~~~a~~l~~~l~~~~y~~~~~~~  142 (199)
                      ...+...+..+.||.-|.+-     |+..+.|+++- .+-+|.+......++.++.+..+.+.
T Consensus        36 ~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~   98 (284)
T TIGR00751        36 TAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLA   98 (284)
T ss_pred             HHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445778889999999844     34334455443 34456777777666666544444443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=81.71  E-value=12  Score=32.58  Aligned_cols=49  Identities=8%  Similarity=0.003  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089           86 IMPIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        86 ~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~  134 (199)
                      ..++...+-..+||+-|.|-|+++.+   |.+| =++.++.+..+...+...+
T Consensus        55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g  107 (306)
T PRK13362         55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAG  107 (306)
T ss_pred             HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            44555778899999999999987654   3333 3455666666655454444

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=80.48  E-value=10  Score=33.01  Aligned_cols=45  Identities=16%  Similarity=0.099  Sum_probs=30.7

Q ss_pred             HHHHHHHHcCCCChHhhHHcC-Ccccc-eeechHhHHHHHHHHHHHH
Q 029089           90 FNAAIAFSKDLPDVEGDKEFG-LRTLP-IILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        90 ~~~~~~~~~di~DvegD~~~G-~~Tl~-v~lG~~~a~~l~~~l~~~~  134 (199)
                      ...+-..+||+-|.|.|++++ .|.+| -++.+|.+......+..++
T Consensus        77 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~  123 (314)
T PRK07566         77 LCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLG  123 (314)
T ss_pred             HHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHH
Confidence            456778999999999999754 22222 2566677777666655554

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=80.08  E-value=39  Score=29.28  Aligned_cols=44  Identities=16%  Similarity=0.138  Sum_probs=27.9

Q ss_pred             HHHHHHHcCCCChHhhHHc-----CC-----cccc---eeechHhHHHHHHHHHHHHH
Q 029089           91 NAAIAFSKDLPDVEGDKEF-----GL-----RTLP---IILGRERVFSIAVNMLLTAY  135 (199)
Q Consensus        91 ~~~~~~~~di~DvegD~~~-----G~-----~Tl~---v~lG~~~a~~l~~~l~~~~y  135 (199)
                      ..+ ..+||+-|.|-|+++     ++     ++=|   -++-+|.+..+...+..++.
T Consensus        55 ~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~  111 (297)
T PRK12871         55 EAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTS  111 (297)
T ss_pred             HHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHH
Confidence            444 599999999999753     21     2222   35666777776666665553

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=80.06  E-value=38  Score=29.16  Aligned_cols=49  Identities=14%  Similarity=0.093  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHcCCCChHhhHHcCCcc------cce-eechHhHHHHHHHHHHHH
Q 029089           86 IMPIFNAAIAFSKDLPDVEGDKEFGLRT------LPI-ILGRERVFSIAVNMLLTA  134 (199)
Q Consensus        86 ~~~l~~~~~~~~~di~DvegD~~~G~~T------l~v-~lG~~~a~~l~~~l~~~~  134 (199)
                      ...+...+-...||.-|.|-|+.+..||      ++. ++-+|++......+..++
T Consensus        48 ~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia  103 (296)
T PRK05951         48 GYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIA  103 (296)
T ss_pred             HHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHH
Confidence            3444567788999999966666554332      221 355677777766655554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00