Citrus Sinensis ID: 029099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccccccccccHHHHEEHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcc
Coil and Loop (DISEMBL)
MLLTCAVICGyiyqcppfrlsyqglgeplcfaafgpfATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFhqvegdrnvgkmsplvrlgtergsVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTkhipklvfq
Flexible Loop (DISEMBL)
MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHqvegdrnvgkmSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Low Complexity Region (SEG)
MLLTCAVICGYIYQCPPFRLSYQGLGEPLCfaafgpfattafYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered region (IsUnstruct)
*LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLV**
Disordered Region (DISOPRED)
MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered Region (DISEMBL)
MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered Region (DISPRO)
MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q0WUA3	382	1,4-dihydroxy-2-naphthoat	no	no	0.849	0.442	0.704	1e-68
P73962	307	Probable 1,4-dihydroxy-2-	N/A	no	0.859	0.557	0.397	8e-27

>sp|Q0WUA3|MENA_ARATH 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2

 Score =  259 bits (661), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 142/169 (84%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           +LL  A++CGY+YQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  
Sbjct: 197 LLLASAILCGYVYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGR 256

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           VLS+S+LVG TTSLILFCSHFHQV+GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L 
Sbjct: 257 VLSSSVLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLL 316

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVR 169
            +GL+R LPL C  +C +T P+G LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 317 VLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKDNGKIFMAKYYCVR 365

Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 1,4-dihydroxy-2-naphthoate (DHNA).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 4

>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA PE=3 SV=1

 Score =  120 bits (300), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 10/181 (5%)

Query: 2   LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATV 61
           L+  A+  GY YQ PPFRL Y GLGE +C   FGP A  A Y        +   S +  +
Sbjct: 129 LIGVAIFLGYTYQGPPFRLGYLGLGELICLITFGPLAIAAAYY-------SQSQSFSWNL 181

Query: 62  LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA 121
           L+ S+ VG++T++ILFCSHFHQVE D   GK SP+VRLGT+ GS V+  +V+ LY L+ A
Sbjct: 182 LTPSVFVGISTAIILFCSHFHQVEDDLAAGKKSPIVRLGTKLGSQVLTLSVVSLY-LITA 240

Query: 122 IG-LSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
           IG L    P   + + A + P    ++ +V + H    ++   K+  V  H   G  + A
Sbjct: 241 IGVLCHQAPWQTLLIIA-SLPWAVQLIRHVGQYHDQPEQVSNCKFIAVNLHFFSGMLMAA 299

Query: 181 G 181
           G
Sbjct: 300 G 300

Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side chain to DHNA. The conversion of DHNA to DMK proceeds in three stages: the removal of the carboxyl group of DHNA as CO(2), the attachment of the isoprenoid side chain, and a quinol-to-quinone oxidation, which is thought to be spontaneous.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
224141217	401	predicted protein [Populus trichocarpa]	0.944	0.468	0.765	1e-79
449438213	404	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.989	0.487	0.710	3e-78
357476309	359	hypothetical protein MTR_4g094100 [Medic	0.959	0.532	0.718	2e-75
388518453	203	unknown [Lotus japonicus]	0.954	0.935	0.710	3e-75
297837449	287	hypothetical protein ARALYDRAFT_475272 [	0.934	0.648	0.725	5e-75
356577827	416	PREDICTED: uncharacterized protein LOC10	0.934	0.447	0.725	2e-74
356533332	483	PREDICTED: uncharacterized protein LOC10	0.934	0.385	0.725	2e-74
356528024	398	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.934	0.467	0.725	4e-73
356551124	397	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.934	0.468	0.709	6e-72
296087485	386	unnamed protein product [Vitis vinifera]	0.849	0.437	0.763	5e-71

>gi|224141217|ref|XP_002323971.1| predicted protein [Populus trichocarpa] gi|118485902|gb|ABK94797.1| unknown [Populus trichocarpa] gi|222866973|gb|EEF04104.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/188 (76%), Positives = 164/188 (87%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           + L CA++CGY+YQCPPFRLSYQGLGEPLCFAAFGPFAT+AFYLLLGST E   L +T T
Sbjct: 209 LFLACAILCGYVYQCPPFRLSYQGLGEPLCFAAFGPFATSAFYLLLGSTSEMSILPLTGT 268

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           +LSASLLVG TT+LILFCSHFHQVE D+ VGK SPLVRLGTERGS VVK AV +LYSLLF
Sbjct: 269 ILSASLLVGFTTTLILFCSHFHQVEEDKAVGKFSPLVRLGTERGSGVVKVAVAMLYSLLF 328

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
           A GLSR LPL+CI LC++T P+GKLVV +VEEN+KDKGKIFMAKY+CVR HALFGAAL +
Sbjct: 329 ASGLSRTLPLACILLCSLTLPMGKLVVGFVEENYKDKGKIFMAKYFCVRLHALFGAALAS 388

Query: 181 GLITARIL 188
           GL+ AR+ 
Sbjct: 389 GLVAARVF 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438213|ref|XP_004136884.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Cucumis sativus] gi|449478849|ref|XP_004155434.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Cucumis sativus]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/197 (71%), Positives = 165/197 (83%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           + L  +++CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLL  + RE   L I+ T
Sbjct: 206 LFLAFSIVCGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLQSNAREMRYLPISNT 265

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           +LSAS+LVG TT+LILFCSHFHQVEGDR VGKMSPLVRLGTERGS VVK AV++LY LLF
Sbjct: 266 ILSASILVGTTTTLILFCSHFHQVEGDRAVGKMSPLVRLGTERGSKVVKVAVIMLYVLLF 325

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
           A+GLS+ LP +CI  C +T P+GKLVVS+VEENHKDK KIFMAKY+CVR HA+FG AL A
Sbjct: 326 ALGLSKNLPFTCILFCGLTIPVGKLVVSFVEENHKDKQKIFMAKYFCVRLHAIFGLALAA 385

Query: 181 GLITARILVTKHIPKLV 197
           GL+ AR++ T +  + +
Sbjct: 386 GLVVARLISTINTSRTI 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476309|ref|XP_003608440.1| hypothetical protein MTR_4g094100 [Medicago truncatula] gi|355509495|gb|AES90637.1| hypothetical protein MTR_4g094100 [Medicago truncatula]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/192 (71%), Positives = 161/192 (83%), Gaps = 1/192 (0%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRE-NLCLSITA 59
           + LTCA+ CGYIYQCPPFRLSYQGLGEPLCFAAFGPFAT AFYL+ GS         ++ 
Sbjct: 164 LFLTCAIFCGYIYQCPPFRLSYQGLGEPLCFAAFGPFATAAFYLVQGSASSVTNHFPLSG 223

Query: 60  TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL 119
           TVLSAS+LVG TTSLILFCSHFHQV+GD  VGK+SPLVRLGTERG+ VVK AV+ LY+LL
Sbjct: 224 TVLSASVLVGFTTSLILFCSHFHQVDGDEEVGKLSPLVRLGTERGAEVVKAAVLSLYALL 283

Query: 120 FAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALV 179
            A GLS+ALPL+CIFLCA+T PIG LV+ +V++NHKDK KIFMAKY+CVR HALFGAAL 
Sbjct: 284 VAFGLSKALPLTCIFLCALTLPIGNLVIKFVQDNHKDKDKIFMAKYFCVRLHALFGAALA 343

Query: 180 AGLITARILVTK 191
            GL+ AR++ +K
Sbjct: 344 FGLVLARMVNSK 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518453|gb|AFK47288.1| unknown [Lotus japonicus]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/190 (71%), Positives = 159/190 (83%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           + L+CA+ICGYIYQCPPFRLSYQGLGEPLCFAAFGPFAT+AFYLL GS        ++ T
Sbjct: 5   LFLSCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATSAFYLLQGSASVMTYFPLSGT 64

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           VLSAS+LVG TTSLILFCSHFHQVEGD+ VGKMSPLVRLGT RG+ VV+  V++LY+LLF
Sbjct: 65  VLSASILVGFTTSLILFCSHFHQVEGDKEVGKMSPLVRLGTNRGAEVVQVVVLMLYALLF 124

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
             GLS+ALPL+CI LC +T P+G LVV +V+ENHKDK KIFMAKY+CVR HALFG AL  
Sbjct: 125 TFGLSKALPLTCILLCTLTLPMGNLVVRFVQENHKDKSKIFMAKYFCVRLHALFGTALAF 184

Query: 181 GLITARILVT 190
           G++ AR++ T
Sbjct: 185 GMVLARVVNT 194

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837449|ref|XP_002886606.1| hypothetical protein ARALYDRAFT_475272 [Arabidopsis lyrata subsp. lyrata] gi|297332447|gb|EFH62865.1| hypothetical protein ARALYDRAFT_475272 [Arabidopsis lyrata subsp. lyrata]

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 156/186 (83%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           +LL  A++CGY+YQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  
Sbjct: 102 LLLASAILCGYVYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGR 161

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           VLS+SLLVG TTSLILFCSHFHQV+GD  VGK SPLVRLGTE+G+ VV+WA+ +LYS+L 
Sbjct: 162 VLSSSLLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAFVVRWAIRLLYSMLL 221

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
            +GLSR LPL C  +C +T PIG LV SYVE++HKD GKIFMAKYYCVR HALFGAAL  
Sbjct: 222 VLGLSRILPLPCTLMCFLTLPIGNLVSSYVEKHHKDNGKIFMAKYYCVRLHALFGAALSL 281

Query: 181 GLITAR 186
           GL+ AR
Sbjct: 282 GLVIAR 287

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577827|ref|XP_003557023.1| PREDICTED: uncharacterized protein LOC100813101, partial [Glycine max]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 156/186 (83%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           + L CA+ICGYIYQCPPFRLSYQGLGEPLCFAAFGPFAT AFYLL GS+       ++ T
Sbjct: 190 LFLVCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATCAFYLLHGSSSVMNHFPLSGT 249

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           VLSAS+LVG TTSLILFCSHFHQVEGDR VGKMSPLVRLGT++G+ VVK A+ +LY+LL 
Sbjct: 250 VLSASILVGFTTSLILFCSHFHQVEGDREVGKMSPLVRLGTKKGAEVVKGAIFMLYALLV 309

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
           A GL +ALPL+CIFLCA+T P+G LVV +VE+N+KDK KIFMAKY+CVR HALFG  L  
Sbjct: 310 AFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKDKNKIFMAKYFCVRLHALFGVTLAL 369

Query: 181 GLITAR 186
           GL+ AR
Sbjct: 370 GLVLAR 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533332|ref|XP_003535219.1| PREDICTED: uncharacterized protein LOC100788238 [Glycine max]

 Score =  283 bits (724), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 156/186 (83%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           + L CA+ICGYIYQCPPFRLSYQGLGEPL FAAFGPFAT AFYLL GS+       ++ T
Sbjct: 252 LFLVCAIICGYIYQCPPFRLSYQGLGEPLSFAAFGPFATCAFYLLHGSSSVMNHFPLSGT 311

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           VLSAS+LVG TTSLILFCSHFHQVEGDR VGKMSPLVRLGT++G+ VVK A+ +LY+LL 
Sbjct: 312 VLSASILVGFTTSLILFCSHFHQVEGDREVGKMSPLVRLGTKKGAEVVKGAIFMLYALLV 371

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
           A GL +ALPL+CIFLCA+T P+G LVV +VE+N+KDK KIFMAKY+CVR HALFG AL  
Sbjct: 372 AFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKDKNKIFMAKYFCVRLHALFGVALAL 431

Query: 181 GLITAR 186
           GL+ AR
Sbjct: 432 GLVLAR 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528024|ref|XP_003532605.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 157/186 (84%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           + L CA+ICGYIYQCPPFRLSYQGLGEPLCFAAFGPFAT AFYLL GS+       ++ T
Sbjct: 202 LFLVCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATCAFYLLHGSSSVMNHFPLSGT 261

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           VLSAS+LVG TTSLILFCSHFHQVEGD+ VGKMSPLVRLGT++G+ VVK AV +LY+LL 
Sbjct: 262 VLSASILVGFTTSLILFCSHFHQVEGDKEVGKMSPLVRLGTKKGAEVVKGAVFMLYALLV 321

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
           A GL +ALPL+CIFLCA+T P+G LVV +VE+N+K+K KIFMAKY+CVR HALFG AL  
Sbjct: 322 AFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKNKNKIFMAKYFCVRLHALFGVALAL 381

Query: 181 GLITAR 186
           GL+ AR
Sbjct: 382 GLVLAR 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551124|ref|XP_003543928.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 132/186 (70%), Positives = 153/186 (82%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           + L CA+ICGYIYQCPPFRLSYQGLGEPLCFAAFGPFAT AFYLL  S R      ++ T
Sbjct: 201 LFLVCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATCAFYLLHASARVKNHFPLSGT 260

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           VLSAS+LVG TTSLILFCSHFHQVEGD+ VGKMSPLVRLG ++G+ VVK AV +LY+LL 
Sbjct: 261 VLSASILVGFTTSLILFCSHFHQVEGDKEVGKMSPLVRLGNKKGAEVVKGAVFMLYALLV 320

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
           A GL +ALPL+CI LC +T P+G LVV +VE+N+KDK KIFMAKY+CVR HA+FG AL  
Sbjct: 321 AFGLIKALPLTCISLCTLTLPLGNLVVRFVEDNYKDKNKIFMAKYFCVRLHAMFGVALAL 380

Query: 181 GLITAR 186
           GL+ AR
Sbjct: 381 GLVLAR 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087485|emb|CBI34074.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/169 (76%), Positives = 145/169 (85%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           +LL CAV CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYL+  +T E +   +TAT
Sbjct: 196 LLLACAVTCGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLMQTATSEMISPLVTAT 255

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           VLSASLLVG TT+LILFCSHFHQVEGDR VGKMSPLVRL TE+GS +VK A+ +LYSLL 
Sbjct: 256 VLSASLLVGFTTTLILFCSHFHQVEGDRAVGKMSPLVRLDTEKGSRIVKMAMAMLYSLLL 315

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVR 169
           A GL++ LP +CIF CA+T P+ KLVVSYVE+NHKD  KIFMAKYYCVR
Sbjct: 316 AFGLAKTLPFTCIFSCALTIPMAKLVVSYVEDNHKDNSKIFMAKYYCVR 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2036484	382	ABC4 "ABERRANT CHLOROPLAST DEV	0.934	0.486	0.634	1.1e-62
TIGR_CMR|DET_0401	306	DET_0401 "1,4-dihydroxy-2-naph	0.824	0.535	0.224	0.00021

TAIR|locus:2036484 ABC4 "ABERRANT CHLOROPLAST DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 118/186 (63%), Positives = 142/186 (76%)

Query:     1 MLLTCAVICGYIYQCPPFRLSYQGLGEPLCXXXXXXXXXXXXYLLLGSTRENLCLSITAT 60
             +LL  A++CGY+YQCPPFRLSYQGLGEPLC            YLLLGS+ E   L ++  
Sbjct:   197 LLLASAILCGYVYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGR 256

Query:    61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
             VLS+S+LVG TTSLILFCSHFHQV+GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L 
Sbjct:   257 VLSSSVLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLL 316

Query:   121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
              +GL+R LPL C  +C +T P+G LV SYVE++HKD GKIFMAKYYCVR HAL GAAL  
Sbjct:   317 VLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKDNGKIFMAKYYCVRLHALLGAALSL 376

Query:   181 GLITAR 186
             GL+ AR
Sbjct:   377 GLVIAR 382

GO:0004659 "prenyltransferase activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009772 "photosynthetic electron transport in photosystem II" evidence=IMP

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0042372 "phylloquinone biosynthetic process" evidence=IMP

GO:0046428 "1,4-dihydroxy-2-naphthoate octaprenyltransferase activity" evidence=ISS

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TIGR_CMR|DET_0401 DET_0401 "1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 111 (44.1 bits), Expect = 0.00021, P = 0.00021
 Identities = 39/174 (22%), Positives = 71/174 (40%)

Query:    12 IYQCPPFRLSYQGLGEPLCXXXXXXXXXXXXYLLLGSTRENLCLSITATVLSASLLVGLT 71
             +Y   P RL+Y GLGE +             Y +           +   VL   ++ GL 
Sbjct:   142 LYSAKPMRLAYHGLGELMMLIGYGPVLTAWGYFVHTGM-------VNRDVLLIGVIPGLC 194

Query:    72 TSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP-L 130
                ++  +     + DR  GK +   RLG +    +   ++  LY+ + A+  +  +P L
Sbjct:   195 MWAMILINEIPDYQEDRAAGKRNLTYRLGPKNAKNLFSISLAGLYTYILALVFTGVMPPL 254

Query:   131 SCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLIT 184
             S I L  +  P+  + V      + D  K+ MA    V  +++  A +  G++T
Sbjct:   255 SAISLGGI--PLAVMAVRIAHRYYNDPIKVAMANKLMVIIYSVTTATVAIGMLT 306


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.143   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       187   0.00085  110 3  11 22  0.47    31
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.29u 0.23s 15.52t   Elapsed:  00:00:01
  Total cpu time:  15.29u 0.23s 15.52t   Elapsed:  00:00:01
  Start:  Fri May 10 05:45:47 2013   End:  Fri May 10 05:45:48 2013

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.2__402__AT1G60600.1	annotation not avaliable (287 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_502237.1	annotation not avaliable (387 aa)			•	•			•		0.710
	fgenesh2_kg.1__2552__AT1G23360.1	annotation not avaliable (262 aa)	•					•	•		0.689
	fgenesh2_kg.2__407__AT1G60550.1	annotation not avaliable (337 aa)	•			•			•		0.661
	fgenesh2_kg.2__1712__AT1G74470.1	annotation not avaliable (467 aa)				•		•			0.583
	fgenesh2_kg.7__8__AT4G38160.2	annotation not avaliable (339 aa)				•			•		0.504
	scaffold_201744.1	annotation not avaliable (1716 aa)				•			•		0.482
	fgenesh2_kg.7__863__AT4G32770.1	annotation not avaliable (482 aa)							•		0.469
	fgenesh2_kg.1__2880__AT1G27300.1	annotation not avaliable (193 aa)					•				0.464
	scaffold_500326.1	annotation not avaliable (175 aa)				•					0.440
	fgenesh2_kg.7__1935__AT4G23660.1	annotation not avaliable (405 aa)							•		0.440

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
PLN02922	315	PLN02922, PLN02922, prenyltransferase	1e-106
PRK07419	304	PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate oct	9e-55
TIGR02235	285	TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphth	3e-45
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	2e-16
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	8e-06
PRK06080	293	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate oct	2e-04
PRK05951	296	PRK05951, ubiA, prenyltransferase; Reviewed	3e-04
TIGR00751	284	TIGR00751, menA, 1,4-dihydroxy-2-naphthoate octapr	0.002
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	0.004

>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase

 Score =  306 bits (785), Expect = e-106
 Identities = 137/188 (72%), Positives = 157/188 (83%), Gaps = 3/188 (1%)

Query: 2   LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS---TRENLCLSIT 58
           LL  A++CGY+YQCPPFRLSY+GLGEPLCFAAFGP ATTAFYL L S     E   L +T
Sbjct: 128 LLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLT 187

Query: 59  ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSL 118
            TVLSAS+LVGLTT+LILFCSHFHQ++GDR VGKMSPLVRLGTE+GS VV+WAV++LYSL
Sbjct: 188 PTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSL 247

Query: 119 LFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL 178
           L A+GL +ALPL C  LC +T P+GKLVV +VE+NHKD  KIFMAKYYCVR HALFGAAL
Sbjct: 248 LAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAAL 307

Query: 179 VAGLITAR 186
             GL+ AR
Sbjct: 308 ALGLVLAR 315

Length = 315

>gnl|CDD|236015 PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

 Score =  175 bits (447), Expect = 9e-55
 Identities = 84/187 (44%), Positives = 110/187 (58%), Gaps = 10/187 (5%)

Query: 2   LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATV 61
           LL C +  GY+YQ PPFRL YQGLGEPLCF AFGP A  A       +        +   
Sbjct: 126 LLCCFL--GYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPSW-------SLIP 176

Query: 62  LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA 121
           L+AS+++GL TSLILFCSHFHQVE D   GK SP+VRLGT+RG+ ++ W V ++Y+L   
Sbjct: 177 LAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELL 236

Query: 122 IGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 181
             L    P + + L  ++ P    ++  V ENH    K+  +K+  VRFH   G  L  G
Sbjct: 237 PVLLGFWPWTTL-LSLLSLPFAIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLG 295

Query: 182 LITARIL 188
           LI A +L
Sbjct: 296 LILAYLL 302

Length = 304

>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate phytyltransferase

 Score =  150 bits (381), Expect = 3e-45
 Identities = 76/182 (41%), Positives = 99/182 (54%), Gaps = 10/182 (5%)

Query: 2   LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATV 61
            L C +  GY+YQ PPFRL YQGLGEP+C+  FGP A  A       +            
Sbjct: 113 GLCCFL--GYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFS-------LIP 163

Query: 62  LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA 121
             AS+LVGL T+LILFCSHFHQVE D   GK SP+VRLGT+  + +V W + + Y +L  
Sbjct: 164 WKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLI 223

Query: 122 IGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 181
             +   LP + +   A      KL +  V +NH +  +I   K+  VRFH L G  L  G
Sbjct: 224 AVIGGFLPWTTLLALASIPWAVKL-IRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLG 282

Query: 182 LI 183
           L+
Sbjct: 283 LL 284

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 285

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 6   AVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATT-AFYLLLGSTRENLCLSITATVLSA 64
            +  G +Y   PF L Y GLGE      FGP     A+Y+  G         ++  +L  
Sbjct: 130 CIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGR--------LSWAILLP 181

Query: 65  SLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 124
           SL VG+  + IL  ++   +E D   GK +  VRLG +    +  +A +++ + L  +  
Sbjct: 182 SLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKL--YAALLVVAYLAIVIF 239

Query: 125 SRALPLSCIFL 135
                     L
Sbjct: 240 VILGLFPVWGL 250

Length = 303

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 8/163 (4%)

Query: 1   MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
           +L    ++ G +Y  PP RL  + L   L                +G         I + 
Sbjct: 96  LLGLLGLLLGLLYS-PPLRLKRRPLLGELVVGLAFGLLILLGAYAVGGD-------IPSP 147

Query: 61  VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
           +L  +L V L +  IL  +    VEGDR  G  +  VRLG +R   +    +     LL 
Sbjct: 148 LLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYALLLAAALLLLL 207

Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMA 163
            + L  A  L  + +  +   +          N ++  + F+ 
Sbjct: 208 LLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLF 250

Length = 259

>gnl|CDD|235695 PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 6   AVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATT-AFYLLLGSTRENLCLSITATVLSA 64
            +    +Y   P    Y GLGE      FG       +YL  G+        + + V   
Sbjct: 122 CIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGT--------VDSAVFLP 173

Query: 65  SLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 124
           +L  GL    +L  ++   +E DR  GK +  VRLG +    +   A ++  + L  + L
Sbjct: 174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRL--HAALLALAYLCIVLL 231

Length = 293

>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 5   CAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATT-AFYLLLGSTRENLCLSITATVLS 63
             V     Y  PPF L Y+ LGE L F A+         Y+ LG        ++++  L 
Sbjct: 124 LGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLG--------NLSSPNLL 175

Query: 64  ASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG 123
           A + +GL  +L+L  ++   +E D   G  +  V  G  RG+ +  +A++  Y +L  + 
Sbjct: 176 AGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGR-RGAALYIFALLSPYVILQILL 234

Query: 124 LSRALPL 130
           ++   PL
Sbjct: 235 IAILTPL 241

Length = 296

>gnl|CDD|129834 TIGR00751, menA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 22  YQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81
           Y GLG+      FGP A      L           +    +  ++  GL    +L  ++ 
Sbjct: 134 YAGLGDISVLVFFGPLAVLGTQYLQA-------HRVDWVGILPAVATGLLACAVLNINNL 186

Query: 82  HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSC-IFLCAM 138
             +  D   GK +  VRLG  R  +  +  + +     F   L+  +   C +FL A 
Sbjct: 187 RDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWCVLFLLAA 244

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 284

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 7   VICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSAS 65
           ++   IY  PP +L   G LG P    ++      A + +           +T   +  +
Sbjct: 116 IVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAP--------LTWQSVVVA 167

Query: 66  LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVV 108
           L+  L    I+  + F  VEGDR +G  S  V +G +R ++V 
Sbjct: 168 LIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVA 210

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	100.0
PLN02922	315	prenyltransferase	100.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13105	282	ubiA prenyltransferase; Reviewed	99.95
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.95
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.95
KOG4581	359	consensus Predicted membrane protein [Function unk	99.9
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.9
PLN00012	375	chlorophyll synthetase; Provisional	99.9
PRK12872	285	ubiA prenyltransferase; Reviewed	99.87
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.86
PRK12875	282	ubiA prenyltransferase; Reviewed	99.82
PRK13591	307	ubiA prenyltransferase; Provisional	99.81
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.81
PRK12884	279	ubiA prenyltransferase; Reviewed	99.73
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.72
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.7
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.67
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.66
PLN02878	280	homogentisate phytyltransferase	99.66
PRK12888	284	ubiA prenyltransferase; Reviewed	99.66
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.61
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.58
PRK12886	291	ubiA prenyltransferase; Reviewed	99.58
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.57
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.57
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.57
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.57
PRK12871	297	ubiA prenyltransferase; Reviewed	99.56
PRK13595	292	ubiA prenyltransferase; Provisional	99.55
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.54
PRK12874	291	ubiA prenyltransferase; Reviewed	99.53
PRK12882	276	ubiA prenyltransferase; Reviewed	99.52
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.5
PRK13106	300	ubiA prenyltransferase; Reviewed	99.29
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.14
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.11
PRK12895	286	ubiA prenyltransferase; Reviewed	99.11
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.1
PRK12876	300	ubiA prenyltransferase; Reviewed	99.08
PRK12873	294	ubiA prenyltransferase; Reviewed	98.66
PRK13592	299	ubiA prenyltransferase; Provisional	98.37
PLN02776	341	prenyltransferase	98.25
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	96.09
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	95.94
PRK12873	294	ubiA prenyltransferase; Reviewed	95.21
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	94.76
PRK12884	279	ubiA prenyltransferase; Reviewed	93.87
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	93.48
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	93.47
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	93.46
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	93.33
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	93.21
PRK08238	479	hypothetical protein; Validated	92.72
PLN02776	341	prenyltransferase	92.6
PRK12882	276	ubiA prenyltransferase; Reviewed	92.51
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	92.33
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	92.14
PRK13362	306	protoheme IX farnesyltransferase; Provisional	92.08
PRK04375	296	protoheme IX farnesyltransferase; Provisional	91.51
PRK12875	282	ubiA prenyltransferase; Reviewed	91.38
PRK12876	300	ubiA prenyltransferase; Reviewed	90.91
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	90.79
PRK12895	286	ubiA prenyltransferase; Reviewed	90.68
PRK12872	285	ubiA prenyltransferase; Reviewed	90.6
PRK13592	299	ubiA prenyltransferase; Provisional	90.18
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	90.07
PRK08238	479	hypothetical protein; Validated	90.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	89.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	87.69
PRK13595	292	ubiA prenyltransferase; Provisional	87.6
PRK05951	296	ubiA prenyltransferase; Reviewed	87.52
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	87.42
PRK12886	291	ubiA prenyltransferase; Reviewed	87.38
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	87.26
PLN00012	375	chlorophyll synthetase; Provisional	86.97
PRK13105	282	ubiA prenyltransferase; Reviewed	86.94
PRK12392	331	bacteriochlorophyll c synthase; Provisional	86.69
PRK13591	307	ubiA prenyltransferase; Provisional	86.43
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	86.27
PRK13106	300	ubiA prenyltransferase; Reviewed	86.09
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	85.68
PRK12871	297	ubiA prenyltransferase; Reviewed	85.01
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.44
PRK12874	291	ubiA prenyltransferase; Reviewed	82.75
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	81.76
PRK12888	284	ubiA prenyltransferase; Reviewed	81.72

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=1e-42  Score=303.11  Aligned_cols=180  Identities=46%  Similarity=0.760  Sum_probs=169.3

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      +.++|++++|+||+||+|+||||+||++++++||++++.|+||+|+++       +++..++.|+|.++.++++|++||+
T Consensus       124 ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~-------~~~~~~~~sl~~gll~~~IL~~Nn~  196 (304)
T PRK07419        124 LVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPS-------WSLIPLAASIILGLATSLILFCSHF  196 (304)
T ss_pred             HHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            457889999999999999999999999999999999999999999998       6789999999999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      ||+|+||++||||++|++|+|+|+++|..+...+|++.+..+..|..|+++ +++++++|++.+.+|.+++++++++++.
T Consensus       197 rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~-Ll~ll~lPl~~~~~~~~~~~~~~~~~l~  275 (304)
T PRK07419        197 HQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTT-LLSLLSLPFAIKLIRLVRENHDQPEKVS  275 (304)
T ss_pred             cchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999987 7999999999999999988765677777


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029099          162 MAKYYCVRFHALFGAALVAGLITARILV  189 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~glll~~~~~  189 (199)
                      .++++|++.++++++++++|++++..++
T Consensus       276 ~~l~~t~~~~~l~g~l~~l~~~l~~~~~  303 (304)
T PRK07419        276 NSKFIAVRFHFWSGLLLSLGLILAYLLP  303 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            8888999999999999999999988743

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=100.00  E-value=5e-42  Score=296.58  Aligned_cols=175  Identities=42%  Similarity=0.747  Sum_probs=164.7

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      +.++|++++|+||+||+|+||+|+||++++++||++++.++||+|+++       +++..++.|+|.++.+.+++++||+
T Consensus       111 lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~-------~~~~~~l~sl~~gl~~~~iL~~Nn~  183 (285)
T TIGR02235       111 LVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS-------FSLIPWKASILVGLATTLILFCSHF  183 (285)
T ss_pred             HHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc-------CcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            456799999999999999999999999999999999999999999998       6799999999999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      ||+|+||++||||++||+|+|+|+++|..+...+|++.+..+..|..||++ +++++++|++.+++|+++++++++++..
T Consensus       184 rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~-ll~ll~lPl~~~~~~~~~~~~~~~~~l~  262 (285)
T TIGR02235       184 HQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTT-LLALASIPWAVKLIRLVRQNHNNPEQIS  262 (285)
T ss_pred             ccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999987 7999999999999999988765677777


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALVAGLIT  184 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~glll  184 (199)
                      +++++|++.++++++++++|+++
T Consensus       263 ~~l~~t~~~~~~~g~l~~~g~~~  285 (285)
T TIGR02235       263 NCKFIAVRFHFLSGILLTLGLLL  285 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            88889999999999999999863

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02922 prenyltransferase

Probab=100.00  E-value=1.8e-40  Score=290.44  Aligned_cols=184  Identities=74%  Similarity=1.281  Sum_probs=165.0

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCc---cccccccchHHHHHHHHHHHHHHHHHHHh
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGST---RENLCLSITATVLSASLLVGLTTSLILFC   78 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~---~~~~~~~~~~~~l~~slp~~l~~~~il~~   78 (199)
                      +.++|++++|+||+||+|+||+|+||++++++||++++.++||+|++.   .++...+++++.++.|+|.+++++++|++
T Consensus       128 iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~  207 (315)
T PLN02922        128 LLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFC  207 (315)
T ss_pred             HHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999883   11112236788999999999999999999


Q ss_pred             cCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 029099           79 SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKG  158 (199)
Q Consensus        79 nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~  158 (199)
                      ||+||+|+||++||||++|++|+|+++++|..+...+|++++..+..|..|+++.+++++++|++.+..+.++++++++.
T Consensus       208 Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~~~~~~~~~~~~  287 (315)
T PLN02922        208 SHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNHKDNA  287 (315)
T ss_pred             ccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence            99999999999999999999999999999999999999999999999999987656888999999999888887655566


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHH
Q 029099          159 KIFMAKYYCVRFHALFGAALVAGLITA  185 (199)
Q Consensus       159 ~~~~~~~~t~~~~~l~~~ll~~glll~  185 (199)
                      ++...++.|++.++++++++++|++++
T Consensus       288 ~l~~~~~~t~~~~~l~g~ll~~g~~l~  314 (315)
T PLN02922        288 KIFMAKYYCVRLHALFGAALALGLVLA  314 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            777788889999999999999999864

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.3e-40  Score=285.32  Aligned_cols=177  Identities=23%  Similarity=0.370  Sum_probs=166.0

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      +..+|+++|++||+||+|++|.|+||++++++||++.+.|+||+|+++       +++..++.|+|+++.+++++++||+
T Consensus       126 lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~-------~~~~~ll~slp~gil~~~Il~aNNi  198 (303)
T COG1575         126 LGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGR-------LSWAILLPSLPVGILIANILLANNL  198 (303)
T ss_pred             HHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHHhccc
Confidence            567899999999999999999999999999999999999999999998       6799999999999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      ||+|+|+++||+|+|||+|+++++.+|..++..+|++.+++.+.+..|+|. ++.++++|+++|.+|++++++..+ +..
T Consensus       199 rDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~-ll~ll~~Pl~ir~~r~v~~~~~~~-~~~  276 (303)
T COG1575         199 RDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWG-LLFLLALPLAIRAARPVRQNQVPA-TLV  276 (303)
T ss_pred             ccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhccCch-HHH
Confidence            999999999999999999999999999999999999999999999999988 789999999999999999986444 555


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                      +..+.+.+.+..+++++.+|++++.+
T Consensus       277 p~l~~~~~~~~~~~~l~~~~i~~~~l  302 (303)
T COG1575         277 PMLKNTVKANLLWNLLLAVGILLSQL  302 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78889999999999999999988754

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=100.00  E-value=5.5e-40  Score=283.72  Aligned_cols=171  Identities=18%  Similarity=0.224  Sum_probs=158.4

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      +.++|++++++||+||+|+||+|+||++++++||++++.|+||+|+++       ++++.++.++|.++++++++++||+
T Consensus       114 lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~-------~~~~~ll~sl~~g~l~~~il~~Nn~  186 (284)
T TIGR00751       114 LGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHR-------VDWVGILPAVATGLLACAVLNINNL  186 (284)
T ss_pred             HHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHcCc
Confidence            456788899999999999999999999999999999999999999998       6788999999999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      ||+|+|+++||||++||+|+|+|+++|..++..+|++.+.++..+..|+|+ +++++++|++.+.+|.+++++ +++++.
T Consensus       187 ~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~-ll~ll~lPl~~~~~~~~~~~~-~~~~l~  264 (284)
T TIGR00751       187 RDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWC-VLFLLAAPLLLKAAGPVRSGR-GPRELR  264 (284)
T ss_pred             ccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            999999999999999999999999999999999999999988888889987 689999999999999998753 456676


Q ss_pred             chHHHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALVAG  181 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~g  181 (199)
                      +..++|++.++++++++++|
T Consensus       265 ~~l~~t~~~~~l~~~l~~ig  284 (284)
T TIGR00751       265 PVLRDTGLAMLLWNLLFALG  284 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            77888999999999999875

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=3.1e-39  Score=282.93  Aligned_cols=185  Identities=18%  Similarity=0.153  Sum_probs=162.7

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccc-----cc----h----HHHHHHHHHH
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCL-----SI----T----ATVLSASLLV   68 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~-----~~----~----~~~l~~slp~   68 (199)
                      +.++|++++++||+||+|+||+|+||++++++||++++.|+||+|++..++...     .+    +    .+.++.|+|+
T Consensus       119 igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~  198 (317)
T PRK13387        119 IGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPI  198 (317)
T ss_pred             HHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999988431100     00    0    0223489999


Q ss_pred             HHHHHHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q 029099           69 GLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVS  148 (199)
Q Consensus        69 ~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~  148 (199)
                      ++.+++++++||+||+|+||++||||+|+++|+|+|+++|..+...+|++.+..+..|..|+++ +++++++|++.+.+|
T Consensus       199 g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~-ll~ll~lP~~~~~~~  277 (317)
T PRK13387        199 IFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWA-LLSFLTLRKPISNLQ  277 (317)
T ss_pred             HHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987 799999999999999


Q ss_pred             HHHhhccccchhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          149 YVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                      .++++++++++.....+.+++.+..+++++++|++++.+
T Consensus       278 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll~~~  316 (317)
T PRK13387        278 SFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLIQYL  316 (317)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            998876666666677778999999999999999998653

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4e-34  Score=248.39  Aligned_cols=172  Identities=20%  Similarity=0.305  Sum_probs=155.7

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      +.++|+++++.||+||+++||||+||+.++++||++++.|+||+|++.       +++..+..++|.++++.+++++||+
T Consensus       121 l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~-------~~~~~~~~sl~~~l~~~~il~~n~~  193 (296)
T PRK05951        121 LALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGN-------LSSPNLLAGVPLGLLMALVLLSNNL  193 (296)
T ss_pred             HHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHHHHHHHHCCC
Confidence            356788999999999999999999999999999999999999999998       5688999999999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      ||+|+||++||||+|+++|+|++ ++|..+...+|++++.++..|..|+++ +++++++|++.+..+..+++. +.++  
T Consensus       194 ~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~ll~lp~~~~~~~~~~~~~-~~~~--  268 (296)
T PRK05951        194 RDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLIS-LWALLSLLVAYALCLWQLRKF-PPDP--  268 (296)
T ss_pred             ccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHhhC-cccc--
Confidence            99999999999999999999999 889899999999999999999999987 688999999999888877653 2222  


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                      ..  .+++.+..+++++++|++++..
T Consensus       269 ~~--~~~~~~~~~g~l~~~~~~l~~~  292 (296)
T PRK05951        269 DE--ATVQLFMLFGYLYILATLLSAL  292 (296)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            22  4999999999999999998764

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=2.6e-33  Score=242.31  Aligned_cols=174  Identities=21%  Similarity=0.296  Sum_probs=159.7

Q ss_pred             hHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH   82 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~   82 (199)
                      .+++++++++||.||+++||+|+||+.+++++|++++.+++|.|+++       +++++++.++|.++++.+++++||+|
T Consensus       119 ~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~n~~~  191 (293)
T PRK06080        119 GLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGT-------VDSAVFLPALPCGLLIGAVLLANNIR  191 (293)
T ss_pred             HHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45677889999999999999999999999999999999999999988       56889999999999999999999999


Q ss_pred             ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 029099           83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM  162 (199)
Q Consensus        83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~  162 (199)
                      |+|+||++||||+|+++|+|++++++..+..++|++.+.....|..|++. +++++++|.+.+.++.+++++ ++++...
T Consensus       192 D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~-ll~ll~~p~~~~~~~~~~~~~-~~~~~~~  269 (293)
T PRK06080        192 DIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWG-LLFLLSLPLAVKAARPVLRKQ-KPETLIP  269 (293)
T ss_pred             cchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence            99999999999999999999999999999999999999999999899987 689999999999999988765 4444556


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 029099          163 AKYYCVRFHALFGAALVAGLITA  185 (199)
Q Consensus       163 ~~~~t~~~~~l~~~ll~~glll~  185 (199)
                      ..+.+++.+..+++++++|++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~  292 (293)
T PRK06080        270 ALKATGKTNLLFGLLFAIGLLLS  292 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            66689999999999999999874

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=3.2e-27  Score=203.89  Aligned_cols=164  Identities=16%  Similarity=0.115  Sum_probs=141.2

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHH--HHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEP--LCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCS   79 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~--~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~n   79 (199)
                      +..++++.++.||+||.|+||+|+||.  .++.++|. .+.|+++. ++.       +++..++.+.++++++.++...|
T Consensus       110 l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~-~v~G~~~~-~~~-------~~~~~~l~~~~~~~~~~a~~ii~  180 (282)
T PRK13105        110 VLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSP-ALYGLVLA-GAP-------FTAALWAVLAAFFLWGMASHAFG  180 (282)
T ss_pred             HHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHH-HHHHHHHh-hcc-------ccHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999  67777787 88888888 555       56778889999999999999999


Q ss_pred             CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH-hhccccc
Q 029099           80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVE-ENHKDKG  158 (199)
Q Consensus        80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~-~~~~~~~  158 (199)
                      |+||+|+||++||||+|+++|+|++.+++..+...++++.+..   + .+. . ++.++++|++.+..|.+. ++ +++.
T Consensus       181 ~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~---~-~~~-~-~l~ll~~p~~~~~~~~~~~~~-~~~~  253 (282)
T PRK13105        181 AVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLAL---P-WPG-W-LAAVLALPYVVNTARFWSVTD-ADCE  253 (282)
T ss_pred             hCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHH---H-hHH-H-HHHHHHHHHHHHHHHHHhhcC-CCHH
Confidence            9999999999999999999999999999999999999888732   2 222 3 578899999999998877 44 3566


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHH
Q 029099          159 KIFMAKYYCVRFHALFGAALVAG  181 (199)
Q Consensus       159 ~~~~~~~~t~~~~~l~~~ll~~g  181 (199)
                      +.+++.+.+++.++++++++++.
T Consensus       254 ~l~~~l~~~~~~~~~~~~l~~~~  276 (282)
T PRK13105        254 RANRGWRRFLWLNYVSGFLVTML  276 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888999999999999984

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.95  E-value=1.7e-26  Score=199.12  Aligned_cols=166  Identities=17%  Similarity=0.251  Sum_probs=135.9

Q ss_pred             hhHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH   80 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn   80 (199)
                      +.+++++.++.||.||+++||+| +||+.+++++|..+..+++..+. .       +++..++.+++.++++.++++.||
T Consensus       111 l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~l~~~~i~~~nd  182 (283)
T TIGR01476       111 FTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA-P-------LTWQSVVVALIYSLGAHGIMTLND  182 (283)
T ss_pred             HHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhC-C-------CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567888999999999999998 79999999998888777776653 3       467888899999999999999999


Q ss_pred             CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 029099           81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKI  160 (199)
Q Consensus        81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~  160 (199)
                      +||+|+||++||||+|+++|+|++++++..+...+|++.+........|+++.++.++..|...+..|.+++++++.+  
T Consensus       183 ~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~p~~~~~~~~~~~~~~~~~--  260 (283)
T TIGR01476       183 FKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVATIVFLLLVAQIYNQIKLFLRDPQQNY--  260 (283)
T ss_pred             ccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhChHHhh--
Confidence            999999999999999999999999999999999899877765444446665446777888988888888876532222  


Q ss_pred             cchHHHHHHHHHHHHHHH
Q 029099          161 FMAKYYCVRFHALFGAAL  178 (199)
Q Consensus       161 ~~~~~~t~~~~~l~~~ll  178 (199)
                       ...+.|++.++.++.+.
T Consensus       261 -~~~~~~~~~~~~~~~~~  277 (283)
T TIGR01476       261 -VRYNATANPFYVLGMLA  277 (283)
T ss_pred             -HHhhhhcHHHHHHHHHH
Confidence             33446999999998765

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.95  E-value=3.5e-26  Score=199.54  Aligned_cols=162  Identities=22%  Similarity=0.228  Sum_probs=131.8

Q ss_pred             hhHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH   80 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn   80 (199)
                      +.++|++++++||+||+|+||+| +||+.++..++..++.+++ .++++       +++..++.+++.++++.++.+.||
T Consensus       133 l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~-a~~g~-------~~~~~~l~~~~~~l~~~~i~~~n~  204 (306)
T TIGR02056       133 LALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGH-ALFGE-------LNPDIAVLTLIYSIAGLGIAIVND  204 (306)
T ss_pred             HHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHHHHHHHH-HHhCC-------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999999999998 7999998888877776655 55666       568888999999999999999999


Q ss_pred             CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 029099           81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGK  159 (199)
Q Consensus        81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~-g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~  159 (199)
                      +||+|+|+++||||+||++|+|++++++..+...+|.+.+..... +..|++. ++.++++|.+.+..|.+++++   .+
T Consensus       205 ~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-ll~ll~~p~~~~~~~~~~~~~---~~  280 (306)
T TIGR02056       205 FKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAA-ALVALIIPQITFQDKYFLKDP---LK  280 (306)
T ss_pred             ccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHHHHHHHHhCh---Hh
Confidence            999999999999999999999999999999988888877665544 4455544 678899999999999887643   22


Q ss_pred             hcchHHHHHHHHHHHH
Q 029099          160 IFMAKYYCVRFHALFG  175 (199)
Q Consensus       160 ~~~~~~~t~~~~~l~~  175 (199)
                      .....+.+++.....+
T Consensus       281 ~~~~~~~~~~~~~~~~  296 (306)
T TIGR02056       281 NDVKYQASAQPFLVLG  296 (306)
T ss_pred             hCcchhhhhhHHHHHH
Confidence            3233334776666555

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.90  E-value=7.7e-25  Score=182.24  Aligned_cols=175  Identities=19%  Similarity=0.304  Sum_probs=153.8

Q ss_pred             HHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChH
Q 029099            6 AVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVE   85 (199)
Q Consensus         6 ~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die   85 (199)
                      |+-.++.||+| +.+||..+||+...+.||++.++..|..|+|+.       .|..+..++|.++-+-+|+++||.||.|
T Consensus       184 gls~sflytgg-igfkyialgdliili~fgpiavlfaf~~q~g~l-------~~~~l~yaiplalnteailhsnntrd~d  255 (359)
T KOG4581|consen  184 GLSGSFLYTGG-IGFKYIALGDLIILILFGPIAVLFAFAIQTGHL-------AIFPLGYAIPLALNTEAILHSNNTRDAD  255 (359)
T ss_pred             CcccceeEecc-cceEEEeccCEEEEEeechHHHHHHHHHhcCce-------eEEeehheeeeccchHHHhccCCCcccc
Confidence            34467899998 599999999999999999999999999999994       4667789999999999999999999999


Q ss_pred             hhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcchHH
Q 029099           86 GDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKY  165 (199)
Q Consensus        86 ~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~~~~  165 (199)
                      .||++|+.|+++.+|+..+..+|..+.+++|.+..++..-  ...|. +++++++|.++.+.|++|++| .-+++ +.  
T Consensus       256 ndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~--~si~~-~lplltip~afqiek~frneq-a~~~l-p~--  328 (359)
T KOG4581|consen  256 NDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALH--CSISF-ALPLLTIPMAFQIEKQFRNEQ-AFHKL-PQ--  328 (359)
T ss_pred             cccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HhHHhhchhHHhHHHHhhhHh-hhhhc-ch--
Confidence            9999999999999999999999999999999998777543  35544 799999999999999999875 23333 44  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 029099          166 YCVRFHALFGAALVAGLITARILVTKHIPK  195 (199)
Q Consensus       166 ~t~~~~~l~~~ll~~glll~~~~~~~~~~~  195 (199)
                      +|+|+++.+|++++.++.++.-+++--.||
T Consensus       329 qtakln~~~gi~yv~~~~~ahqlpa~~l~k  358 (359)
T KOG4581|consen  329 QTAKLNFFFGIFYVFACCCAHQLPAFGLPK  358 (359)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccCCcCCCCC
Confidence            599999999999999999998777777776

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.90  E-value=8.1e-23  Score=178.95  Aligned_cols=164  Identities=19%  Similarity=0.221  Sum_probs=124.3

Q ss_pred             hhHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHH-HHhcCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFY-LLLGSTRENLCLSITATVLSASLLVGLTTSLILFCS   79 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y-~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~n   79 (199)
                      +.++++++++.||+||+++||++ +||+.+++++|..+..+++ +.+++.       .++..++.+++.+++..+++..|
T Consensus       137 l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~-------~~~~~~l~~~~~~l~~~~~~~~~  209 (314)
T PRK07566        137 AALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGL-------PSWPIVILALLYSLGAHGIMTLN  209 (314)
T ss_pred             HHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHhccCC-------CCHHHHHHHHHHHHHHHHHHHHH
Confidence            34577888999999999999999 6999999999887765544 444334       56888999999999999999999


Q ss_pred             CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 029099           80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGK  159 (199)
Q Consensus        80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~  159 (199)
                      |+||+|+||++|+||+|+++|++++++++..++..+|++.+........+++..++.++..|.+....+..++. ++.+ 
T Consensus       210 d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~-  287 (314)
T PRK07566        210 DFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDP-LERD-  287 (314)
T ss_pred             HHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCh-hhcC-
Confidence            99999999999999999999999999999999999988875553332233333345667788887776664332 2222 


Q ss_pred             hcchHHHHHHHHHHHHH
Q 029099          160 IFMAKYYCVRFHALFGA  176 (199)
Q Consensus       160 ~~~~~~~t~~~~~l~~~  176 (199)
                        ...+.+.+.+.+++.
T Consensus       288 --~~~~~~~~~~~~~~l  302 (314)
T PRK07566        288 --VWYNASAQPFYVLGM  302 (314)
T ss_pred             --hhhhhhhhHHHHHHH
Confidence              222346666666543

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.90  E-value=1.6e-22  Score=180.81  Aligned_cols=166  Identities=22%  Similarity=0.218  Sum_probs=129.2

Q ss_pred             hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      .++|+++++.||+||+++||+++ |++..+..+|.++.++++ ..++.       +++..++.+++.+++..++.+.||+
T Consensus       203 ~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a~~g~-------~s~~~illal~~~l~~lai~ivnd~  274 (375)
T PLN00012        203 ALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQ-ALFGT-------LTPDVVVLTLLYSIAGLGIAIVNDF  274 (375)
T ss_pred             HHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHH-HHcCC-------CCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            35677889999999999999997 999888888887776665 55666       5688889999999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      ||+|+||++|+||+||++|++++++++..+.....++.+........+++..++.++.+|......+.+.++   +.+.+
T Consensus       275 ~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~~~y~~~~~~l~l~~l~~~~~~~~~~---p~~~~  351 (375)
T PLN00012        275 KSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQFKYFLPD---PVKND  351 (375)
T ss_pred             cchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHH
Confidence            999999999999999999999999998766666655554443322222322356677888888888877653   44444


Q ss_pred             chHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALV  179 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~  179 (199)
                      ...+.+++.+++++.+.+
T Consensus       352 ~~~~~~a~~~~~~~~l~~  369 (375)
T PLN00012        352 VKYQASAQPFLVFGLLVT  369 (375)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555568899888886543

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=1.3e-20  Score=162.17  Aligned_cols=144  Identities=16%  Similarity=0.117  Sum_probs=122.3

Q ss_pred             hhHHHHHHhhccCCCCc-cccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 029099            2 LLTCAVICGYIYQCPPF-RLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCS   79 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~-~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~n   79 (199)
                      +.+++.++++.||.||. ++|+.| +||+.++..+|..++.+.++.+++.       ++...++.++...+.+......|
T Consensus       109 ~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~fl~~~~~~~~~  181 (285)
T PRK12872        109 IFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLT-------IFSLLLLYAVFIFLKSFIREIVF  181 (285)
T ss_pred             HHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccc-------cchHHHHHHHHHHHHHHHHHHHH
Confidence            35677788999999887 589876 7999999999999999998887765       45677888888888888888999


Q ss_pred             CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 029099           80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEEN  153 (199)
Q Consensus        80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~  153 (199)
                      |+||+|+||++|+||+|+++|+|++++++..+...+++..+.....|..|++. +..++..|......+.+.++
T Consensus       182 d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  254 (285)
T PRK12872        182 DIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLL-LVLLLLLAYVLYYIIKLFAA  254 (285)
T ss_pred             hcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999998888888876 45566667766655555544

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.86  E-value=1.8e-20  Score=163.84  Aligned_cols=128  Identities=24%  Similarity=0.323  Sum_probs=103.6

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHH-HHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLC-FAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH   80 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~-~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn   80 (199)
                      +.+++.++++.||.||+|+||+|++|..+ +...|.....|.|+...+... ....++...++.+++..+++.++.+.||
T Consensus       125 ~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~d  203 (308)
T PRK12887        125 TVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLG-GSVLIPPTVWLLTLFVLVFTFAIAIFKD  203 (308)
T ss_pred             HHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            45688899999999999999999988654 445566666776553221100 0112567788899999999999999999


Q ss_pred             CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099           81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL  130 (199)
Q Consensus        81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~  130 (199)
                      +||+|+||++|+||+|+++|++++.+++..+...+|+..+.....+..++
T Consensus       204 i~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~  253 (308)
T PRK12887        204 IPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTV  253 (308)
T ss_pred             ccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999888876665444

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.82  E-value=1.4e-18  Score=150.33  Aligned_cols=108  Identities=18%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             HHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099            4 TCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ   83 (199)
Q Consensus         4 ~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D   83 (199)
                      +..++.++.||+||+|+||+|++|..++..+ .+++.++|++|+++       .++..+..+  .++++.++...||+||
T Consensus       120 l~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~-~~~~~~~y~~~tg~-------~~~~~l~~a--~~l~~~~~~~in~i~D  189 (282)
T PRK12875        120 LAFLVLSVEYSAPPLRFKTTPVLDSLSNGLY-ILPGVAAYALVSGS-------LPPLLAVAG--GWLWAMGMHTFSAIPD  189 (282)
T ss_pred             HHHHHHHHHHcCCCccchhccHHHHHHHHHH-HHHHHHHHHHHcCC-------CcHHHHHHH--HHHHHHHHHHHHhccC
Confidence            4567899999999999999999998763333 46778999999987       445544444  4789999999999999


Q ss_pred             hHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHH
Q 029099           84 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA  121 (199)
Q Consensus        84 ie~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~  121 (199)
                      +|+||++||||+|+++|+++++++...+...+-.+...
T Consensus       190 ie~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~  227 (282)
T PRK12875        190 IEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAA  227 (282)
T ss_pred             HHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887777666655444

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.81  E-value=2.5e-19  Score=155.85  Aligned_cols=137  Identities=17%  Similarity=0.139  Sum_probs=100.6

Q ss_pred             hhHHHHHHhhccCCC----Cccc---ccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH--
Q 029099            2 LLTCAVICGYIYQCP----PFRL---SYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT--   72 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~----P~~l---~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~--   72 (199)
                      +.+++.++++.||.|    |.++   +|.|+||+++++++|.+.+.+.... ++.            +..+.+.++..  
T Consensus       124 l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~-~~~------------~~~~~~i~l~~~~  190 (307)
T PRK13591        124 LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSY-CGS------------LIPVGLIFLFFGV  190 (307)
T ss_pred             HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhh-hhh------------HHHHHHHHHHHHH
Confidence            457788899999998    8888   6677999999999998776432111 111            11222333333  


Q ss_pred             --HHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 029099           73 --SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYV  150 (199)
Q Consensus        73 --~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~  150 (199)
                        ......||+||+|+||++||||+|+++|++++++++..+..++|++++..+..|..|+.+ ...+-+++.-+--.+..
T Consensus       191 ~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~-~~~~~s~~~~l~~~~~~  269 (307)
T PRK13591        191 KLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEP-IILLYSFVCGLICIQVY  269 (307)
T ss_pred             HHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhhHHHHHHHHHHHHHH
Confidence              333478999999999999999999999999999999999999999999999999888644 23333454444444444


Q ss_pred             Hh
Q 029099          151 EE  152 (199)
Q Consensus       151 ~~  152 (199)
                      ++
T Consensus       270 ~~  271 (307)
T PRK13591        270 SS  271 (307)
T ss_pred             cC
Confidence            44

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.81  E-value=5.6e-19  Score=155.83  Aligned_cols=141  Identities=18%  Similarity=0.233  Sum_probs=105.2

Q ss_pred             HHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099            4 TCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH   82 (199)
Q Consensus         4 ~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~   82 (199)
                      ++++++++.||.||+++||+++ ||+.++++||...+.+. +++.++       +++..++.+.+.++++.+....||++
T Consensus       132 ~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~-~a~~g~-------~~~~~~~l~~~~~l~~~~~~~i~d~~  203 (331)
T PRK12392        132 LAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSA-NALFSD-------IRPEVVWLAGLNFFMAIALIIMNDFK  203 (331)
T ss_pred             HHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHH-HHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            4568899999999999999985 99999999997666544 444455       56778888999999999999999999


Q ss_pred             ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 029099           83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE  152 (199)
Q Consensus        83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~  152 (199)
                      |+|+||+.|+||+|+++|++++.++.........++.......-..++......++..|......+..|+
T Consensus       204 D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~r~  273 (331)
T PRK12392        204 SVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVLMYFILVGLVLNIVIQIQLYRD  273 (331)
T ss_pred             chhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999988766664555555444333222332323334444555555555544

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.73  E-value=2.9e-16  Score=134.92  Aligned_cols=133  Identities=15%  Similarity=0.052  Sum_probs=102.5

Q ss_pred             hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      .+++++.++.||.   ++|++++ ||+.+++.+|.....|.++++. .        +...+..+....+++......||+
T Consensus       110 ~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--------~~~~~~l~~~~~~~~~~~~~~~~~  177 (279)
T PRK12884        110 VILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGIAVGE-L--------NEAVILLAAMAFLMTLGREIMKDI  177 (279)
T ss_pred             HHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHHHhCC-C--------chHHHHHHHHHHHHHHHHHHHHHh
Confidence            4667788999984   7899986 9999999888766666665532 2        236677778888888888999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVV  147 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~  147 (199)
                      +|+|+||++|+||+|+++|+|++++++.......+++.......|..+++.....++..+......
T Consensus       178 ~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~  243 (279)
T PRK12884        178 EDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLVADLIFLYSA  243 (279)
T ss_pred             hhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888888766665566555544344445555555444

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.72  E-value=7.4e-17  Score=135.21  Aligned_cols=95  Identities=26%  Similarity=0.453  Sum_probs=83.5

Q ss_pred             hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      .+++.+.++.|| +|+++|++++ +|+.+++++|.....+.+. +++.       .+.+.++.+.+.+++..++...||+
T Consensus        98 ~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  168 (257)
T PF01040_consen   98 LLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGGD-------PPPPPFLLAIFFFLLIFAIMFFNDI  168 (257)
T ss_pred             HHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCCc-------ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456677789999 8999999999 9999999998777766655 4554       4578889999999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHH
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSV  106 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~  106 (199)
                      ||+|+|+++|+||+|+++|+++++.
T Consensus       169 ~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  169 RDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             hhHHHHHHcCCcchHHHHHHHHHHH
Confidence            9999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.70  E-value=7.3e-16  Score=133.19  Aligned_cols=165  Identities=12%  Similarity=0.076  Sum_probs=119.6

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      +.+++.++++.||..   -++++++|+..+++++. .++++|++++++       ++++.++.+++..+++.+....|++
T Consensus       119 ~~~~~~~~~~~Y~~~---Kr~~~~~~~~~g~~~~~-~~l~~~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~~a~  187 (285)
T PRK12847        119 LSFIAVILIVLYPLM---KRFFYWPQLFLGFTFNM-GILMAFAAVQNQ-------LDIEAILLYIGCIFWTIGYDTIYAY  187 (285)
T ss_pred             HHHHHHHHHHhcccc---ccCCcccHHHHHHHHHH-HHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677788999852   23567899999988884 677788888887       5688889999999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      +|+|+|+++|++|+|+++|++++.+++.......+++.......|..+++. +...+.  ......+...-+.+|++   
T Consensus       188 ~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~--~~~l~~~~~~~~~~~~~---  261 (285)
T PRK12847        188 QDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFY-LAILAA--AGIFYYQYKLLDFDNPA---  261 (285)
T ss_pred             ccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHH--HHHHHHHHHHhCCCCHH---
Confidence            999999999999999999999999999998888888887777777766644 222222  22222222211112222   


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALVAGLIT  184 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~glll  184 (199)
                      ..+ +.-+.+...+.++.+++++
T Consensus       262 ~~~-~~f~~~~~~~~l~~~~~~~  283 (285)
T PRK12847        262 NCM-YAFKANHYVGLLLFLGAVL  283 (285)
T ss_pred             HHH-HHHHHhHHHHHHHHHHHHh
Confidence            122 2455666666666666654

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.67  E-value=3.4e-15  Score=128.82  Aligned_cols=170  Identities=15%  Similarity=0.101  Sum_probs=115.1

Q ss_pred             hHHHHHHhhccCCCCcccccc-cchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~-glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      ...+.++.+.|+    .+||+ +++++..++++|. ++.+++.+++++.+     .....++.+++..+++.+..+.||+
T Consensus       111 ~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~~~g~~a~~g~~~-----~~~~~~ll~~~~~~w~~~~~~i~~~  180 (282)
T TIGR01475       111 SPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGL-APLAGWVAVIGTIS-----FFLVAWLLGIGVGFWIAGFDLIYAI  180 (282)
T ss_pred             HHHHHHHHHHHh----hHhccccccHHHHHHHHHH-HHHHHHHHHhCCcc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666788897    36765 5799999988885 55666777777731     1266778899999999999999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      +|+|+|+++|+||+|+++|+|++++.+.......+.+.......+...+..+....+.........+..+.  +|++   
T Consensus       181 ~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~l~~~~~~~~~--~~~~---  255 (282)
T TIGR01475       181 QDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIGLILAYEHYIVDP--GDQS---  255 (282)
T ss_pred             hhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHcCC--CCHH---
Confidence            99999999999999999999999999988887777776655544433332222222223333333332221  1222   


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                      ..++.--..+...++++.+|++++.+
T Consensus       256 ~~~~~ff~~~~~l~~~~~~g~~~~~~  281 (282)
T TIGR01475       256 KIQRAFFYANGFLSITFLIGVIIDVL  281 (282)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            12222345556677778888877654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.66  E-value=5.7e-15  Score=127.42  Aligned_cols=102  Identities=14%  Similarity=0.056  Sum_probs=90.2

Q ss_pred             HHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHh
Q 029099            7 VICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEG   86 (199)
Q Consensus         7 ~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~   86 (199)
                      +..++.||.   ++||+++++..++...|.++++++|++++++       +++..++.+++..+++.+..++++++|+|+
T Consensus       117 ~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~-------~~~~~~ll~~~~~~w~~~~~~~l~~~d~ed  186 (279)
T PRK12869        117 FFYAVVYTI---WLKPRTWLNIVIGGFAGNAAALAGYASGTGS-------LDLEAVLLSFLIYLWTPGHIWSLALKYRED  186 (279)
T ss_pred             HHHHhhhCc---ccccCChHHHHHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            456788993   7999999999999999999999999999988       568889999999999999999999999999


Q ss_pred             hHhcCCcccccccChhhHHHHHHHHHHHHHHH
Q 029099           87 DRNVGKMSPLVRLGTERGSVVVKWAVMILYSL  118 (199)
Q Consensus        87 D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~  118 (199)
                      |+++|+||+|++.|++++++....+.......
T Consensus       187 d~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~  218 (279)
T PRK12869        187 YRRAGVPMLPAVVGEKTSVRAISISNALMIPY  218 (279)
T ss_pred             HHHcCCeecceeecHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998876665544333

>PLN02878 homogentisate phytyltransferase

Probab=99.66  E-value=4.5e-15  Score=127.64  Aligned_cols=120  Identities=20%  Similarity=0.258  Sum_probs=90.0

Q ss_pred             HHHHHHhhccCC--CCcccccccchHHHHHHhHhHHHHHHHHHHh--cCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 029099            4 TCAVICGYIYQC--PPFRLSYQGLGEPLCFAAFGPFATTAFYLLL--GSTRENLCLSITATVLSASLLVGLTTSLILFCS   79 (199)
Q Consensus         4 ~~~~~~~~~YS~--~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~--~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~n   79 (199)
                      ..++++++.||.  ||+|+|++++-...++++-+.+.+-.++|.+  +..++ .+..++.+.+...+...++..++...|
T Consensus        98 ~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g-~~~~~~~~~~~~~~f~~~f~~~i~i~K  176 (280)
T PLN02878         98 FVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLG-RPAVFTRPLIFATAFMCFFSVVIALFK  176 (280)
T ss_pred             HHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhC-CccccchhHHHHHHHHHHHHHHHHHHh
Confidence            456688999997  9999999998666666554444443333332  21111 111244455566667888899999999


Q ss_pred             CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHH
Q 029099           80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL  124 (199)
Q Consensus        80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~  124 (199)
                      |+||+|+||+.|+||+|+++|++++.++...+...+|...+....
T Consensus       177 Di~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~  221 (280)
T PLN02878        177 DIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGA  221 (280)
T ss_pred             hCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999996555433

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.66  E-value=6.7e-15  Score=127.44  Aligned_cols=168  Identities=15%  Similarity=0.117  Sum_probs=113.7

Q ss_pred             HHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099            4 TCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ   83 (199)
Q Consensus         4 ~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D   83 (199)
                      .++++..+.|+   +.-+++.++++..+++++. .++++|++++++       ++++.++.+++.++++....+.|+++|
T Consensus       115 ~~~~~~~~~Y~---~~Kr~t~~~~~~lg~~~~~-~~l~g~~a~~g~-------~~~~~~ll~~~~~~w~~~~~~i~a~~D  183 (284)
T PRK12888        115 PLAVAPLVVYP---YAKRFTNFPHAILGLAQAV-GPVGAWIAVTGT-------WSWPAVLLGLAVGLWIGGFDLIYACQD  183 (284)
T ss_pred             HHHHHHHHHHH---HhhcccchhhHHHHHHHHH-HHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34555666784   3345567899999888765 556778898887       568888999999999999999999999


Q ss_pred             hHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcch
Q 029099           84 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMA  163 (199)
Q Consensus        84 ie~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~~  163 (199)
                      +|+||++|+||+|+++|+|++.+++..+....+++.......+...+..+....++....  .+++..-+.+|+++. ..
T Consensus       184 ~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~~~~~~~~~l--~~~~~~~~~~~~~~~-~~  260 (284)
T PRK12888        184 AEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWIGLAITAGAF--AYEHAIVSPTDLSRV-NR  260 (284)
T ss_pred             HHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH--HHHHHHcCccCHHHH-HH
Confidence            999999999999999999999988877777777665555444433332211222222222  223222222233333 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          164 KYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       164 ~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                        .--+.+...|+++.+|++++.+
T Consensus       261 --~ff~~n~~ig~~~~~~~~~~~~  282 (284)
T PRK12888        261 --AFFTANGFVGIALFGFALLDLL  282 (284)
T ss_pred             --HHHHHhhHHHHHHHHHHHHHHH
Confidence              1134556677888888887764

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.61  E-value=5.5e-14  Score=120.91  Aligned_cols=136  Identities=13%  Similarity=0.065  Sum_probs=88.8

Q ss_pred             hHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      .+.+...++.||.   ++|+++ +||+.++..+|..++.|.+.+  ++       +++..+... ...++..+..+.||+
T Consensus       110 ~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g~~a~--~~-------~~~~~~~~~-~~fl~~~~~~~~~~~  176 (277)
T PRK12883        110 ALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYGAIAV--GR-------IGLAGYLAI-CAFLVNVAREIMKDI  176 (277)
T ss_pred             HHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHHHHHh--cc-------ccHHHHHHH-HHHHHHHHHHHHhhh
Confidence            4566778999996   556666 699999999998887666543  44       334444333 345666788899999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE  152 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~  152 (199)
                      ||+|+||++|+||+|+++|++++++..........+........+. ++......++..+......+..++
T Consensus       177 ~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~~~-~~~y~~~~~~~~~~l~~~~~~~~~  246 (277)
T PRK12883        177 EDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKAGI-GLGYLPIIIVDAIILYAAYLVLRN  246 (277)
T ss_pred             hhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999876654332222222222232 221111223445555555555543

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.58  E-value=1.1e-13  Score=119.16  Aligned_cols=137  Identities=12%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      .+++++..+.||.   ++|+++. ||+.++..+|..++.|.++.++ .         ...+.......+++.+....||+
T Consensus       110 ~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~-~---------~~~~~l~~~~f~~~~~~~~~~~~  176 (279)
T PRK09573        110 ALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGGLAVFN-V---------LRIIILFLCAFFSTWSREIVKDI  176 (279)
T ss_pred             HHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHHHHHcc-c---------hHHHHHHHHHHHHHHHHHHHhhh
Confidence            4567778899984   6788875 9999999999998888777754 2         22334455556777788889999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHHh
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF-LCAMTSPIGKLVVSYVEE  152 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~l-l~ll~lP~a~~~~~~~~~  152 (199)
                      +|+|+|+++|+||+|+++|+|++.++.........++.......|...+..+. ...+..+......+..++
T Consensus       177 ~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~  248 (279)
T PRK09573        177 EDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILLKN  248 (279)
T ss_pred             hhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence            99999999999999999999999999877766655554444333432332211 112234444444555543

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.58  E-value=1.9e-13  Score=118.74  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=91.8

Q ss_pred             HHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099            4 TCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ   83 (199)
Q Consensus         4 ~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D   83 (199)
                      ++++...+.||.   .-+++++|++..+++++ .+++++|++++++       +++..++.+++..+|+...-+.++++|
T Consensus       118 ~~~~~~~~~Y~~---~Kr~t~~~~~~~g~~~~-~~~l~g~~a~~g~-------~~~~~~ll~~~~~lw~~~~~~~~a~~D  186 (291)
T PRK12886        118 PPALFFLLLYSY---CKRFTALAHVVLGFCLA-LAPLGAWIAIRGT-------IELPAILLGLAVLFWVAGFDILYALQD  186 (291)
T ss_pred             HHHHHHHHHHhh---hhccccccHHHHHHHHH-HHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            345666778883   23445789999888866 4567889999887       567888899999999998878889999


Q ss_pred             hHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099           84 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL  130 (199)
Q Consensus        84 ie~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~  130 (199)
                      +|+|+++|+||+|+++|++++++.........+.+.......+..++
T Consensus       187 ~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (291)
T PRK12886        187 LEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP  233 (291)
T ss_pred             HHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            99999999999999999999999987777777776666555444343

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.57  E-value=2e-13  Score=117.68  Aligned_cols=117  Identities=9%  Similarity=-0.000  Sum_probs=90.9

Q ss_pred             HHHHHH-hhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099            4 TCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH   82 (199)
Q Consensus         4 ~~~~~~-~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~   82 (199)
                      +++++. ++.||.   ++||+++++..++...|.++++++|++++++       +++..++.+++..+++..-.....++
T Consensus       112 ~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~  181 (280)
T TIGR01473       112 LFGIFFYVIVYTI---WLKRRTPQNTVIGGFAGAVPPLIGWAAVTGS-------ISLGAWLLFAIIFLWQPPHFWALALK  181 (280)
T ss_pred             HHHHHHHHhhcCh---hhccCCchhHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445544 789995   6899999999998899999999999999988       56778888888888888866666789


Q ss_pred             ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099           83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL  130 (199)
Q Consensus        83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~  130 (199)
                      |+|+||++|+||+|+++|+|++.+...................+..++
T Consensus       182 ~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (280)
T TIGR01473       182 YKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW  229 (280)
T ss_pred             hhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence            999999999999999999999987665554444444333333444444

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.57  E-value=1.8e-13  Score=120.06  Aligned_cols=167  Identities=13%  Similarity=0.008  Sum_probs=112.0

Q ss_pred             hhHHHHHHhhccCCCCccccc-ccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099            2 LLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH   80 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y-~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn   80 (199)
                      +.+++++..+.||.    .|| ++++....++.++..+.. +|++++++       +++..+...+...++....-.++|
T Consensus       146 l~~~~~~~~~~Y~~----~KR~t~~~~~~~Gl~~~~~~l~-g~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~~a  213 (314)
T PRK12878        146 LGIASLAIVAAYPF----MKRITWWPQFFLGLAFSWGALM-GWAAHFGS-------LSLAAVLLYAGSIAWTIGYDTIYA  213 (314)
T ss_pred             HHHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHH-HHHHHhCC-------CchHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788999973    454 355665556665544444 48999988       557777777788888888888899


Q ss_pred             CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 029099           81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKI  160 (199)
Q Consensus        81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~  160 (199)
                      ++|+|+|+++|+||+|+++|++++++++........++.+.....+. +++. +++.+..+.. ...+..+.+.++++  
T Consensus       214 ~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~~~-l~~~~~~~~~~~~~--  288 (314)
T PRK12878        214 HQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAGV-PLLA-LLGLLAAAAH-LAWQIARLDIDDPD--  288 (314)
T ss_pred             hhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhcC-cHHH-HHHHHHHHHH-HHHHHHHcccCChH--
Confidence            99999999999999999999999999986666666555444445553 6644 4555555543 22232221112222  


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          161 FMAKYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       161 ~~~~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                       .. ++..+.+..++.++.++++++.+
T Consensus       289 -~~-~~~F~~n~~~~~ll~~~l~~~~~  313 (314)
T PRK12878        289 -QC-LRLFKSNRDAGLLIFLGLVVGGL  313 (314)
T ss_pred             -HH-HHHHHHhHHHHHHHHHHHHHHhh
Confidence             11 24667777788888888777653

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.57  E-value=1e-13  Score=119.73  Aligned_cols=117  Identities=18%  Similarity=0.054  Sum_probs=89.6

Q ss_pred             hHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH   82 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~   82 (199)
                      .+++++..+.|+   +.-++.+++++..++++|+. +..+|++++++       +++..++++++..+++....+.|+++
T Consensus       117 ~~~~~~~~~~Y~---~~Kr~~~~~~~~~g~~~g~~-~~~g~~a~~~~-------~~~~~~~l~~~~~~w~~~~~~~~a~~  185 (282)
T PRK12848        117 SVAALALAWIYP---FMKRYTHLPQVVLGAAFGWG-IPMAFAAVQGS-------VPLEAWLLFLANILWTVAYDTQYAMV  185 (282)
T ss_pred             HHHHHHHHHHHH---hHHhcCcccHHHHHHHHHHH-HHHHHHHHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455677788994   45667789999988888864 45678888887       56788889999999999999999999


Q ss_pred             ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099           83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL  130 (199)
Q Consensus        83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~  130 (199)
                      |+|+|+++|++|+|+++|++++.+...........+.......+..++
T Consensus       186 D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (282)
T PRK12848        186 DRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWA  233 (282)
T ss_pred             cHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            999999999999999999999887764444333333333333444333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.57  E-value=1.7e-13  Score=118.34  Aligned_cols=165  Identities=15%  Similarity=0.062  Sum_probs=107.5

Q ss_pred             hhHHHHHHhhccCCCCccccc-ccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099            2 LLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH   80 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y-~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn   80 (199)
                      +.++++++++.||.    .|+ .+++++..++.++..++.| |++++++       +++..++..+...+++.....+||
T Consensus       114 l~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~~~~~g-~~a~~g~-------~~~~~~ll~~~~~lw~~~~~~~~a  181 (281)
T TIGR01474       114 LGVASLALVATYPF----MKRITYWPQLVLGLAFGWGALMG-WAAVTGD-------LSTAAWVLYLANILWTLGYDTIYA  181 (281)
T ss_pred             HHHHHHHHHHHhch----hcccccccHHHHHHHHHHHHHHH-HHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999973    444 5679999888888655554 7777877       457777778888999999999999


Q ss_pred             CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 029099           81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKI  160 (199)
Q Consensus        81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~  160 (199)
                      ++|+|+|+++|+||+|+++|+++++..........+++.......+..++.. +...+..-........+++  +|+++ 
T Consensus       182 ~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~~~~~~~~~~~~~~~~--~~~~~-  257 (281)
T TIGR01474       182 MQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYY-LGLAAAALLLIRQIATLDI--RDPEN-  257 (281)
T ss_pred             HhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHHHHhCC--CCHHH-
Confidence            9999999999999999999999976665555554554444443444333322 2222222222222233221  22222 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHH
Q 029099          161 FMAKYYCVRFHALFGAALVAGLITA  185 (199)
Q Consensus       161 ~~~~~~t~~~~~l~~~ll~~glll~  185 (199)
                        .+ +.-+.+...+.++.++++++
T Consensus       258 --~~-~~F~~~~~~~~~l~~~~~~~  279 (281)
T TIGR01474       258 --CL-KLFKANNYVGLLLFAGIALG  279 (281)
T ss_pred             --HH-HHHHHhhHHHHHHHHHHHHH
Confidence              22 35566666777777676654

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.56  E-value=2.4e-13  Score=118.49  Aligned_cols=165  Identities=15%  Similarity=0.001  Sum_probs=105.3

Q ss_pred             hHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH   82 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~   82 (199)
                      .+.+.++++.|+.+|.. .+.+.+++.-++.++..++.|  +++++.       +++..++.+++..+++.+...+||++
T Consensus       129 ~~~~~~~~~~Y~~~kr~-~~~p~~~l~G~~~~~~~~~~g--~~~~g~-------~~~~~~ll~~~~~~w~~~~~~~~a~~  198 (297)
T PRK12871        129 MLYSYGIEAFYQVKKRN-QKYPVAQLLGRTDFTLFPAAG--YLCYGQ-------PDMTALLYMVFFYPWTMAHLGLNDFI  198 (297)
T ss_pred             HHHHHHHHHHHhccccc-ccccHHHHHHHHHHHHHHHHH--HHHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35667788999988754 556777754445555533333  356666       56778888999999999999999999


Q ss_pred             ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 029099           83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM  162 (199)
Q Consensus        83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~  162 (199)
                      |+|+|+++|+||+|+++|++++++....+..+..+..+.... +..+.....+.+...|......+..+++  |+++- .
T Consensus       199 D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~  274 (297)
T PRK12871        199 DLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAIFFLR-ELGPIALYGFLAGFVLLAGANLYLWKEK--SQDAG-M  274 (297)
T ss_pred             hhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHH-H
Confidence            999999999999999999999998777666666544443322 3322211112234445555555555443  22211 2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 029099          163 AKYYCVRFHALFGAALVAGLIT  184 (199)
Q Consensus       163 ~~~~t~~~~~l~~~ll~~glll  184 (199)
                      .   .-+..-.+...+...+.+
T Consensus       275 ~---~f~~~~~~~~~~~~~~~~  293 (297)
T PRK12871        275 K---ILPLYHASLVIYAVSIIL  293 (297)
T ss_pred             H---HHHHHHHHHHHHHHHHHh
Confidence            2   334444455555554443

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.55  E-value=2.3e-13  Score=118.01  Aligned_cols=158  Identities=15%  Similarity=0.070  Sum_probs=101.1

Q ss_pred             hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      +.+++.+++++||.||+|+|+||+.|-.+...+|.-.  +...+..+..      ..+..+   +...++..+.-...++
T Consensus       123 l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~--~~~~~~~g~~------~~~~~l---~a~~~w~~g~dii~ai  191 (292)
T PRK13595        123 LLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPL--ALPALALGAP------VPWPPL---LALMAWSVGKHAFDAA  191 (292)
T ss_pred             HHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHH--HHHHHHcCCc------chHHHH---HHHHHHHHHHHHHHhc
Confidence            3456778999999999999999998877766666522  2223444441      223322   3335666777889999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      +|+|+||+.|.||+|+++|++++.++...+..++-++.....    .|.+   +. +.+|.+....+..+|.  ++++-.
T Consensus       192 ~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~----~~~~---~~-~~~~~~~~~~~~~~~~--~~~~~~  261 (292)
T PRK13595        192 QDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS----RLTA---LA-LWLICGGMALALWRRP--TPETAH  261 (292)
T ss_pred             cChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc----chHH---HH-HHHHHHHHHHHHhcCC--CHHHHh
Confidence            999999999999999999999999998877766555433322    2331   22 5666666666644332  233332


Q ss_pred             chHHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALVA  180 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~  180 (199)
                      -.-++..-++.+.|.+.++
T Consensus       262 ~~~~~~~~~~~~~g~~~~~  280 (292)
T PRK13595        262 RLYPLSIVTPWIVGTVAGV  280 (292)
T ss_pred             ccchHHHHHhHHHHHHHHH
Confidence            2222344455555544443

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.54  E-value=2.2e-13  Score=118.24  Aligned_cols=169  Identities=12%  Similarity=-0.015  Sum_probs=112.6

Q ss_pred             hHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH   82 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~   82 (199)
                      .+.+.+..+.||.   .-++++++++..++++|. .+.++|++++++       +++..++.+++..+++...-.+++++
T Consensus       121 ~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~~~-~~l~g~~a~~g~-------~~~~~~~l~~~~~lw~~~~d~~~a~~  189 (290)
T PRK12870        121 CVAAVPVIFLYPL---AKRVFPVPQLVLAIAWGF-AVLISWSAVTGH-------LDLGTWLLWAATVFWTLGFDTVYAMS  189 (290)
T ss_pred             HHHHHHHHHHhhh---hhhccccceeeehHHHHh-HHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556677888973   455667889988888885 678888888888       55778888999999999999999999


Q ss_pred             ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 029099           83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM  162 (199)
Q Consensus        83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~  162 (199)
                      |+|+|+++|.+|+|+++|++++.++..........+.......|..++.. ....+..-......+.++++  +.++. .
T Consensus       190 D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~-~~~~~~~~~l~~~~~~~~~~--~~~~~-~  265 (290)
T PRK12870        190 DREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFW-IGLAIAAVLWARQYRRLRQA--NLPPL-A  265 (290)
T ss_pred             hHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHHHHhccc--CCChH-H
Confidence            99999999999999999999998776643333333333333445444422 22222222222222333222  12221 1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          163 AKYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       163 ~~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                      . +..-+.+...+.++.+|++++.+
T Consensus       266 ~-~~~F~~n~~~g~~~~~~~~~~~~  289 (290)
T PRK12870        266 Y-GQLFLQNVWIGFLLLAGMILGSL  289 (290)
T ss_pred             H-HHHHHHhhHHHHHHHHHHHHHhh
Confidence            1 13567777788888888777654

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.53  E-value=7.9e-13  Score=114.92  Aligned_cols=166  Identities=12%  Similarity=0.025  Sum_probs=105.6

Q ss_pred             HHHHHHhhccCCCCccccc-ccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099            4 TCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH   82 (199)
Q Consensus         4 ~~~~~~~~~YS~~P~~l~y-~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~   82 (199)
                      +.++.....||.    .|+ .++|++..++++|..++.| +.+.+|+       +++..++.+++..+|+......|+++
T Consensus       123 ~~~~~~~~~Y~~----~KR~t~~~~~~~g~~~~~~~l~G-~~av~g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~  190 (291)
T PRK12874        123 FPFLIVLGGYSY----FKRFSSLAHLVLGLSLGLAPIAG-VVAVLGE-------IPLWSVFLALGVMFWVAGFDLLYSLQ  190 (291)
T ss_pred             HHHHHHHHHHhh----hcccccccHHHHHHHHHHHHHHH-HHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345556778883    455 4679999999988665555 4444666       45667788899999999999999999


Q ss_pred             ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 029099           83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM  162 (199)
Q Consensus        83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~  162 (199)
                      |+|+||++|++|+|+++|++++.+..........++...........++.+....+..-......+..++  +++ +.  
T Consensus       191 D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~-~~--  265 (291)
T PRK12874        191 DMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAYLGVIVSALILLYEHYLVRK--DFK-KI--  265 (291)
T ss_pred             cHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcC--CCh-HH--
Confidence            9999999999999999999999987766555444444433222222222211111222222233333321  111 11  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          163 AKYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       163 ~~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                       ++..-..+...++++.++.+++.+
T Consensus       266 -~~~ff~sn~~l~~l~~~~~~~~~~  289 (291)
T PRK12874        266 -DKAFFTLNGYLGIVFFIFIVLDVL  289 (291)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHh
Confidence             222345556677777777777765

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.52  E-value=6.2e-13  Score=114.34  Aligned_cols=108  Identities=15%  Similarity=0.039  Sum_probs=83.2

Q ss_pred             hHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      ..++.+.++.||.   ++|+++ +||+.++...|.....|..+... .       .....+..+++..+++.+....||+
T Consensus       111 ~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~-~-------~~~~~~~l~~~~fl~~~~~~~~~~~  179 (276)
T PRK12882        111 ALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVGT-E-------GLLALLVLFALAALATLAREIIKDV  179 (276)
T ss_pred             HHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhcc-c-------chHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4566777899984   899987 59999988888776666544422 1       1244556677777888888999999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHH
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA  121 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~  121 (199)
                      +|+|+||++|+||+|+++|+|++.++.........+....
T Consensus       180 ~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~  219 (276)
T PRK12882        180 EDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL  219 (276)
T ss_pred             hhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999877776655544443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.50  E-value=1.3e-12  Score=113.72  Aligned_cols=112  Identities=13%  Similarity=0.020  Sum_probs=89.1

Q ss_pred             HhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhH
Q 029099            9 CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDR   88 (199)
Q Consensus         9 ~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~   88 (199)
                      ..+.||.   ++||++.|+..++...|..+++++|++++++       +++..++.+++..++...-.++++++|+|+|+
T Consensus       127 ~~~~Ys~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~-------~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~  196 (296)
T PRK04375        127 YVVVYTL---WLKRRTPQNIVIGGAAGAMPPLIGWAAVTGS-------LSWEALILFLIIFLWTPPHFWALAIFRKDDYA  196 (296)
T ss_pred             HHHHhcc---chhcCCccchHHHHHHHHhHHHHHHHHhCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4568883   7999999999988778888888899999887       56888889999999999989999999999999


Q ss_pred             hcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099           89 NVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL  130 (199)
Q Consensus        89 ~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~  130 (199)
                      ++|.||+|+++|++++++.........-...+.....|..++
T Consensus       197 ~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (296)
T PRK04375        197 AAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL  238 (296)
T ss_pred             HcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence            999999999999999887665444433333333344443344

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.29  E-value=1.8e-10  Score=100.59  Aligned_cols=171  Identities=14%  Similarity=0.051  Sum_probs=99.4

Q ss_pred             HHHHHHhhccCCCCccccc-ccchHHHHHHhHhHHHHHHHHHHhcCccccc-cccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099            4 TCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENL-CLSITATVLSASLLVGLTTSLILFCSHF   81 (199)
Q Consensus         4 ~~~~~~~~~YS~~P~~l~y-~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~-~~~~~~~~l~~slp~~l~~~~il~~nn~   81 (199)
                      ..+++..+.|+    ..|+ +.++++..++++|..+..| +.+.++..... ...++..++...+...+++...-..|++
T Consensus       125 ~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~~~~~G-~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~  199 (300)
T PRK13106        125 PIVALIAMSYP----YMKRYTAFANYHLASIQGLAVFSG-AVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHI  199 (300)
T ss_pred             HHHHHHHHHHh----HHhcCCcchHHHHHHHHHHHHHHH-HHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34445566786    2455 5679999999999765554 45555542100 0001223333444455566666677999


Q ss_pred             CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099           82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF  161 (199)
Q Consensus        82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~  161 (199)
                      +|+|+|+++|+||+|+++| |++.++...+...+-++.........+.+..+....+..  ..-..+...-+ .+ ++. 
T Consensus       200 ~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~~~~~~~--~~l~~~~~~~~-~~-~~~-  273 (300)
T PRK13106        200 PDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIAATILHG--LIMAYAYYLAS-KK-GDF-  273 (300)
T ss_pred             cchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHHHhC-Cc-hHH-
Confidence            9999999999999999999 888888877777666665555433333332211111111  11122222111 12 222 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          162 MAKYYCVRFHALFGAALVAGLITARIL  188 (199)
Q Consensus       162 ~~~~~t~~~~~l~~~ll~~glll~~~~  188 (199)
                      ..   .-+.+...|+++.+|++++.++
T Consensus       274 ~~---~F~~n~~ig~~~~~~~~~~~~~  297 (300)
T PRK13106        274 GR---AFYYNIYSSIVLGLGIIIDVLL  297 (300)
T ss_pred             HH---HHHHccHHHHHHHHHHHHHHHH
Confidence            22   3366777888888888877763

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.14  E-value=3.7e-09  Score=91.53  Aligned_cols=116  Identities=22%  Similarity=0.139  Sum_probs=89.5

Q ss_pred             hhHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099            2 LLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH   80 (199)
Q Consensus         2 ~~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn   80 (199)
                      +..++.++.+.|   | .+|+.+ ++....+..+|.....|.. +..++       .+...+++.+...+++.+.-..++
T Consensus       121 l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~~~g~~-a~~~~-------~~~~~~~l~~~~~l~~~~~~~i~~  188 (289)
T COG0382         121 LSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGALAGAA-AVGGS-------LPLLAWLLLLAAILWTLGYDIIYA  188 (289)
T ss_pred             HHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHHHHHHH-HHhCc-------cchHHHHHHHHHHHHHHHHHHHHh
Confidence            456677888999   4 777765 5899999999876666554 44443       346777888889999999999999


Q ss_pred             CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccch
Q 029099           81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP  129 (199)
Q Consensus        81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p  129 (199)
                      ++|+|+||+.|.+|+|+.+|++++..+........-+........+..+
T Consensus       189 ~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~  237 (289)
T COG0382         189 IQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLG  237 (289)
T ss_pred             ccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            9999999999999999999999999998887744444444444444443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.11  E-value=5.5e-09  Score=90.85  Aligned_cols=164  Identities=11%  Similarity=0.001  Sum_probs=94.0

Q ss_pred             hHHHHHHhhccCCCCcccccc-cchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHH-HHHHHHHHHHHHHHhcC
Q 029099            3 LTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLS-ASLLVGLTTSLILFCSH   80 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~-glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~-~slp~~l~~~~il~~nn   80 (199)
                      ..++++..+.||    ..||+ .++++..+++++. ....+|.+++++.       ++.... ......+|+..--....
T Consensus       120 ~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l~g~~av~g~~-------~~~~~~~l~~~~~~W~~~~d~~ya  187 (289)
T PLN02809        120 GASSLLLVFTYP----LMKRFTFWPQAFLGLTFNW-GALLGWAAVKGSL-------DPAVVLPLYASGVCWTLVYDTIYA  187 (289)
T ss_pred             HHHHHHHHHHHh----HHHhcCcchHHHHHHHHHH-HHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788997    26665 5799988888774 4455667777763       333332 33444455533334445


Q ss_pred             CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHhh-ccccc
Q 029099           81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-SRALPLSCIFLCAMTSPIGKLVVSYVEEN-HKDKG  158 (199)
Q Consensus        81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~-~g~~p~~~~ll~ll~lP~a~~~~~~~~~~-~~~~~  158 (199)
                      ++|+|+||++|.+|+|+++|++...++. .+....+.+...... .+..++..  +. .... +.....+.+.- .+|++
T Consensus       188 ~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~~~~--~~-~~~~-~~~l~~~~~~v~~~~~~  262 (289)
T PLN02809        188 HQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGWPYY--AG-LAAA-AGHLAWQIQTVDLSSRA  262 (289)
T ss_pred             HhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHH--HH-HHHH-HHHHHHHHHHcCCCCHH
Confidence            5799999999999999999999666555 455556666544433 33322211  21 1111 11222222221 12333


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          159 KIFMAKYYCVRFHALFGAALVAGLITARI  187 (199)
Q Consensus       159 ~~~~~~~~t~~~~~l~~~ll~~glll~~~  187 (199)
                      +.   . +.-+.+...|.++.+|++++..
T Consensus       263 ~~---~-~~F~~n~~~g~~~~~~~~~~~~  287 (289)
T PLN02809        263 DC---N-RKFVSNKWFGAIVFAGIVLGKL  287 (289)
T ss_pred             HH---H-HHHHhCCHHHHHHHHHHHHHHh
Confidence            22   2 1345555677777777777654

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.11  E-value=3.6e-09  Score=91.93  Aligned_cols=161  Identities=10%  Similarity=0.028  Sum_probs=102.3

Q ss_pred             cccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCccccc
Q 029099           19 RLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLV   97 (199)
Q Consensus        19 ~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav   97 (199)
                      ..||+. ++.+..++.+| ..+++++.+.+++.+     ..+..++..+...+|+..-=....+.|+|+|++.|.||+|+
T Consensus       124 ~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~g~~~-----~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~  197 (286)
T PRK12895        124 FLKRYTAWRHIYMGSIIG-LGVLAGYLAVIPAFP-----YNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMN  197 (286)
T ss_pred             HHHhCccccHHHHHHHHH-hHHHHHHHHHcCCCC-----chHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHH
Confidence            577775 68888899999 577777778777632     22334566777888888888999999999999999999999


Q ss_pred             ccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcchHHHHHHHHHHHHHH
Q 029099           98 RLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAA  177 (199)
Q Consensus        98 ~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~l  177 (199)
                      ++|++++.++...+...+..+..........++ . .+.. .+....-.+++..-+++|+++.   ....-+.+...|.+
T Consensus       198 ~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-y-~~~~-~~~~~~l~~q~~~~~~~~~~~~---~~~~F~~N~~ig~~  271 (286)
T PRK12895        198 TYGIKNGLYISDIFHISSLILFWISGIYIRTLW-Y-LAAL-IIIYTLVIYQHLIIDPRNPINK---RMSFFNANSFIGFV  271 (286)
T ss_pred             HHCCccHHHHHHHHHHHHHHHHHHHHHHHhhHH-H-HHHH-HHHHHHHHHHHHHhcCCCHHHH---HHHHHHHcCHHHHH
Confidence            999999987765555554444433333222222 1 1221 1222222223222222233322   11235566677888


Q ss_pred             HHHHHHHHHHHhhc
Q 029099          178 LVAGLITARILVTK  191 (199)
Q Consensus       178 l~~glll~~~~~~~  191 (199)
                      +.+|.+++.+++-+
T Consensus       272 ~~~~~~~~~~~~~~  285 (286)
T PRK12895        272 FLIGIILSLRFPIR  285 (286)
T ss_pred             HHHHHHHHhccccc
Confidence            88888888887643

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.10  E-value=1e-08  Score=89.92  Aligned_cols=92  Identities=13%  Similarity=0.072  Sum_probs=77.6

Q ss_pred             HhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhH
Q 029099            9 CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDR   88 (199)
Q Consensus         9 ~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~   88 (199)
                      ..+.||   .++||++..+..++-..|.+++++++++++++       +++..+.+.....+|+..-.++-.+.|+|+|+
T Consensus       130 ~~~~Yt---~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~-------~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~  199 (306)
T PRK13362        130 YVGVYS---LYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQ-------FDAGALILLLMFSLWQMPHSYAIAIFRFNDYA  199 (306)
T ss_pred             HHHHHh---HHHhccCcHhHHHHHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence            367898   38999999777776666788899999999988       56778888888889998888888899999999


Q ss_pred             hcCCcccccccChhhHHHHHHH
Q 029099           89 NVGKMSPLVRLGTERGSVVVKW  110 (199)
Q Consensus        89 ~~Gk~Tlav~lG~~~a~~l~~~  110 (199)
                      ++|.+|+|++.|++++++....
T Consensus       200 ~aG~~~lpv~~G~~~t~~~~~~  221 (306)
T PRK13362        200 AAGIPVLPVARGIAKTKLHIVL  221 (306)
T ss_pred             HCCCeeeceecChHHHHHHHHH
Confidence            9999999999999988875433

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.08  E-value=1.1e-08  Score=89.39  Aligned_cols=169  Identities=10%  Similarity=0.020  Sum_probs=97.5

Q ss_pred             hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchH----HHHHHHHHHHHHHHHHHH
Q 029099            3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITA----TVLSASLLVGLTTSLILF   77 (199)
Q Consensus         3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~----~~l~~slp~~l~~~~il~   77 (199)
                      ..++++..+.||    ..||+.. +.+..++.++. .+.+++.+.+++.      .++    ..++.+++..+++..-=.
T Consensus       122 ~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~~-~~l~~~~Av~~~~------~~~~l~~~~~lw~~~~~~~~~g~Di  190 (300)
T PRK12876        122 AVLSTLLMIIYP----YTKRVTFLCHWILGLVYYL-AILMNFFAIIETP------LSFSLFCMASLWGISFGMIIAANDI  190 (300)
T ss_pred             HHHHHHHHHHHH----hHhcCCchhHHHHHHHHHH-HHHHHHHHHhcCc------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667778896    4899876 88877777775 5555555655441      233    334445555566655555


Q ss_pred             hcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029099           78 CSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-SRALPLSCIFLCAMTSPIGKLVVSYVEENHKD  156 (199)
Q Consensus        78 ~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~-~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~  156 (199)
                      ...+.|+|+||+.|.||+|+++|++++.+....+.....++...... .+..++.. +..++..-......++.+.-++|
T Consensus       191 iYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y-~~~~~~~~~~l~~~~~~~~~~~~  269 (300)
T PRK12876        191 IYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFY-LCSLVPLTVILKTIKHYSLIDKK  269 (300)
T ss_pred             HHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            66799999999999999999999999877766555554444433332 33332312 23333223333334442221122


Q ss_pred             cchhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 029099          157 KGKIFMAKYYCVRFHALFGAALVAGLITAR  186 (199)
Q Consensus       157 ~~~~~~~~~~t~~~~~l~~~ll~~glll~~  186 (199)
                      ..+. ..  ..-+.+...++.+.+|++...
T Consensus       270 ~~~~-~~--~~F~~N~~ig~~~~~~~~~~~  296 (300)
T PRK12876        270 KSTL-EQ--KFFLGNIYLALSFFVNMIGLF  296 (300)
T ss_pred             chHH-HH--HHHHhcCHHHHHHHHHHHHHH
Confidence            2222 11  244555566666666665544

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.66  E-value=1.3e-06  Score=76.32  Aligned_cols=107  Identities=16%  Similarity=0.050  Sum_probs=67.9

Q ss_pred             HHHHHhhccCCCCcccccc-cchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099            5 CAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ   83 (199)
Q Consensus         5 ~~~~~~~~YS~~P~~l~y~-glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D   83 (199)
                      ++++....||.    .||+ .+..+..+++++ .+++++|.+.+++.+     .....+.+.....+|+..-=..-.+.|
T Consensus       125 ~~~~~~~~Y~~----~KR~t~~~~~vlg~~~a-~~~l~gw~Av~g~~~-----~~~~~l~l~~~~~~W~~~~d~iyA~qD  194 (294)
T PRK12873        125 LALPPILIYPS----AKRWFAYPQAILALCWG-FAVLIPWAAAEGSLN-----GGWPLLFCWLATLLWTFGFDTVYAMAD  194 (294)
T ss_pred             HHHHHHHHHHH----HHhccccchHHHHHHHH-hHHHHHHHHHhCCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555677872    4543 345666666655 566677777777732     112333444566777766655667789


Q ss_pred             hHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHH
Q 029099           84 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI  122 (199)
Q Consensus        84 ie~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~  122 (199)
                      +|+|+++|.+++|++.|+ ++.+....+.....++....
T Consensus       195 ~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~  232 (294)
T PRK12873        195 RRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALA  232 (294)
T ss_pred             HhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999997 45555445554444444333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=98.37  E-value=9.8e-06  Score=70.72  Aligned_cols=106  Identities=6%  Similarity=0.003  Sum_probs=69.2

Q ss_pred             HHHHHhhcc-----CCCCcccccccc-hHHHHHHhHhHHHHHH------HHHHhcCccccccccchHHHHHHHHHHHHHH
Q 029099            5 CAVICGYIY-----QCPPFRLSYQGL-GEPLCFAAFGPFATTA------FYLLLGSTRENLCLSITATVLSASLLVGLTT   72 (199)
Q Consensus         5 ~~~~~~~~Y-----S~~P~~l~y~gl-Ge~~~~~~~G~l~~~g------~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~   72 (199)
                      ...++.+.|     +.   ++|..++ |.+.+...-|.....+      .+........    ......+..++-..+..
T Consensus       116 ~~~~i~~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~----~~~~~~~~l~l~afl~~  188 (299)
T PRK13592        116 GWFLFLYIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP----LLSLPTVLLAFTMYFPS  188 (299)
T ss_pred             HHHHHHHHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHH
Confidence            344567788     65   8888887 8888877666444322      2211111100    01111234455555666


Q ss_pred             HHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHH
Q 029099           73 SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL  119 (199)
Q Consensus        73 ~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~  119 (199)
                      .+--.++|++| |+|++ |.+|+|+++|+|+|.++...+.....+.-
T Consensus       189 l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s  233 (299)
T PRK13592        189 LIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTN  233 (299)
T ss_pred             HHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHh
Confidence            67779999999 88885 59999999999999999988877666553

>PLN02776 prenyltransferase

Probab=98.25  E-value=0.00016  Score=64.40  Aligned_cols=96  Identities=8%  Similarity=0.029  Sum_probs=71.9

Q ss_pred             hhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHh
Q 029099           10 GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRN   89 (199)
Q Consensus        10 ~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~~   89 (199)
                      ...||    .+|++......++...|.++++++|.+.+++       +++..+++.....+|+..=-+.=-+.|.|+|++
T Consensus       113 ~~vYt----~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~-------~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~  181 (341)
T PLN02776        113 AFVYT----PLKQIHPANTWVGAVVGAIPPLMGWAAASGQ-------LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAA  181 (341)
T ss_pred             HHHHH----hHccCCchhHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            45788    4899988888888889989999999999988       567777777778888773233334567789999


Q ss_pred             cCCccccccc--ChhhHHHHHHHHHHHHH
Q 029099           90 VGKMSPLVRL--GTERGSVVVKWAVMILY  116 (199)
Q Consensus        90 ~Gk~Tlav~l--G~~~a~~l~~~l~~~~y  116 (199)
                      +|.+.+++.-  |+++++..........-
T Consensus       182 ag~pmlpv~~~~g~~ta~~i~~~~~~l~~  210 (341)
T PLN02776        182 GGYRMLSLADATGRRTALVALRNCLYLAP  210 (341)
T ss_pred             CCCcccCccccchHHHHHHHHHHHHHHHH
Confidence            9999999865  57777766655444433

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.075  Score=46.67  Aligned_cols=133  Identities=11%  Similarity=0.018  Sum_probs=87.0

Q ss_pred             hhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHh
Q 029099           10 GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRN   89 (199)
Q Consensus        10 ~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~~   89 (199)
                      ...||.   .+|||-.-.++.+-.=|-.+++.+|.+.+|+       +++..+++...+.+|+-.=-++=-++-.|+=++
T Consensus       136 v~vYT~---~lKR~T~~NiviGg~aGa~PpliGwaAvtg~-------~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~  205 (304)
T COG0109         136 VVVYTL---WLKRRTPQNIVIGGFAGAMPPLIGWAAVTGS-------ISLGAILLFAIIFLWTPPHFWALALKYKDDYKA  205 (304)
T ss_pred             hhhhhh---hccCCcccceeeeeccccccccceeeeeeCC-------CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            567895   7999988777776666889999999999988       456666555555555433222333344566789


Q ss_pred             cCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHh
Q 029099           90 VGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP-LSCIFLCAMTSPIGKLVVSYVEE  152 (199)
Q Consensus        90 ~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p-~~~~ll~ll~lP~a~~~~~~~~~  152 (199)
                      +|.--+|+.-|++..++-......+-....+.....|... ........+........+|..++
T Consensus       206 AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~  269 (304)
T COG0109         206 AGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRK  269 (304)
T ss_pred             cCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999998876554444444434444455432 22223444556666666666665

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=95.94  E-value=0.2  Score=43.35  Aligned_cols=39  Identities=21%  Similarity=-0.012  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---ccccc
Q 029099           59 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV   97 (199)
Q Consensus        59 ~~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk---~Tlav   97 (199)
                      ....+..+...+..++....||+.|+|.||++-+   |-+|.
T Consensus        47 ~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~s   88 (289)
T COG0382          47 KLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPS   88 (289)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCC
Confidence            4566667777888889999999999999999887   44444

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=95.21  E-value=0.37  Score=42.25  Aligned_cols=42  Identities=14%  Similarity=0.003  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccChh
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE  102 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~~  102 (199)
                      .+...+-..+...+-+..||+-|+|-|+++.| ++=|.-=|+-
T Consensus        46 ~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~i   88 (294)
T PRK12873         46 LLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKI   88 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCC
Confidence            44555566677888899999999999998877 4666555543

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=94.76  E-value=2.3  Score=37.22  Aligned_cols=81  Identities=12%  Similarity=0.038  Sum_probs=46.8

Q ss_pred             HHHHHHhhccCCCCcccccccchH-HHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099            4 TCAVICGYIYQCPPFRLSYQGLGE-PLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH   82 (199)
Q Consensus         4 ~~~~~~~~~YS~~P~~l~y~glGe-~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~   82 (199)
                      ...++..+.||.   ++|++++-+ +.+..+|+.-...|+... ...       .+...+..+...+++....-=.+|..
T Consensus       122 ~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~lr~~~G~~a~-~~~-------~s~wll~~~~~~~lfla~~kR~~E~~  190 (295)
T PRK12324        122 LVYLVLNLAYSF---KLKHQPVLDVFCIASGFVLRAIAGGVAI-GVP-------LSPWLLLCTALLSLFLAAGKRKAELR  190 (295)
T ss_pred             HHHHHHHHHhhH---HhcCCchhhHHHHHHHHHHHHHHHHHHh-CCC-------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567789994   899999754 444556665444444322 222       33344444445555555555666777


Q ss_pred             ChHhhHhcCCccc
Q 029099           83 QVEGDRNVGKMSP   95 (199)
Q Consensus        83 Die~D~~~Gk~Tl   95 (199)
                      +.++|.+..|+++
T Consensus       191 ~~~~~~~~~r~~~  203 (295)
T PRK12324        191 LLEDTGAKHRKVL  203 (295)
T ss_pred             HHhhccccccccc
Confidence            7666655555554

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=93.87  E-value=1.2  Score=38.12  Aligned_cols=41  Identities=15%  Similarity=0.058  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccCh
Q 029099           60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGT  101 (199)
Q Consensus        60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~  101 (199)
                      ..++..+...+...+....||+-|+|.|+++ |++=|..-|+
T Consensus        38 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         38 EALLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            3444445555666777889999999999998 6666766664

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=93.48  E-value=0.96  Score=39.64  Aligned_cols=55  Identities=20%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhc-CCccccc---ccChhhHHHHHHHHHHHH
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNV-GKMSPLV---RLGTERGSVVVKWAVMIL  115 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~-Gk~Tlav---~lG~~~a~~l~~~l~~~~  115 (199)
                      .++..+..++...+....||+-|+|.||++ .|+.=|.   ++.++.+..+...+..++
T Consensus        48 ~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~  106 (295)
T PRK12324         48 VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS  106 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence            344444566677788899999999999996 3333333   345555555544444444

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=93.47  E-value=1.3  Score=36.68  Aligned_cols=36  Identities=19%  Similarity=0.149  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhcCCCChHhhHhc-CCcccccccChhh
Q 029099           68 VGLTTSLILFCSHFHQVEGDRNV-GKMSPLVRLGTER  103 (199)
Q Consensus        68 ~~l~~~~il~~nn~~Die~D~~~-Gk~Tlav~lG~~~  103 (199)
                      ..+...++...||.-|.|.|+.+ +|..-|..-|+-+
T Consensus        32 ~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   32 VFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            34666677789999999999996 3344444344433

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=93.46  E-value=1.1  Score=39.11  Aligned_cols=51  Identities=8%  Similarity=-0.039  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhcCCCChHhhHhcCCccccc---ccChhhHHHHHHHHHHHHHHHHH
Q 029099           69 GLTTSLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSLLF  120 (199)
Q Consensus        69 ~l~~~~il~~nn~~Die~D~~~Gk~Tlav---~lG~~~a~~l~~~l~~~~y~~~~  120 (199)
                      .+...+.-..||+-|.|.|++.++ +=|+   ++.++.+......+..++.++..
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~  117 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIAGIAIAF  117 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            455566678999999999998764 3333   35555555555444444444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=93.33  E-value=3.4  Score=35.51  Aligned_cols=50  Identities=4%  Similarity=-0.018  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcC---Cccccc-ccChhhHHHHHH
Q 029099           60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVG---KMSPLV-RLGTERGSVVVK  109 (199)
Q Consensus        60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~G---k~Tlav-~lG~~~a~~l~~  109 (199)
                      ..++..+...+...+....||+-|+|.|+++.   .|.+|. ++.++.+.....
T Consensus        37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~   90 (282)
T TIGR01475        37 TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII   90 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence            34555566677788888999999999999873   234433 445555554443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=93.21  E-value=2.4  Score=36.94  Aligned_cols=42  Identities=10%  Similarity=-0.101  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccChhh
Q 029099           62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTER  103 (199)
Q Consensus        62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~~~  103 (199)
                      ++..+-..+..++-...||+-|+|-|++..| ++-|..=|+-.
T Consensus        48 ~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is   90 (289)
T PLN02809         48 ALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALT   90 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCC
Confidence            3444555677777789999999999998766 46666667543

>PRK08238 hypothetical protein; Validated

Probab=92.72  E-value=7.4  Score=36.38  Aligned_cols=74  Identities=9%  Similarity=0.065  Sum_probs=45.8

Q ss_pred             HHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099            5 CAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ   83 (199)
Q Consensus         5 ~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D   83 (199)
                      ..++....||   +++|++++ +-+...+.|+.=...|+ .+. +        ++.+.+++.. ..++...+.+.+-..|
T Consensus       303 ~~~~~~~~Ys---~~lKr~~~~~~~~la~~~~lr~~~G~-~a~-~--------~~~s~wll~~-~~~~~l~la~~KR~~E  368 (479)
T PRK08238        303 AYLALTLAYS---LRLKRKVLVDVLTLAALYTLRIIAGA-AAI-G--------VALSFWLLAF-SMFFFLSLALVKRYTE  368 (479)
T ss_pred             HHHHHHHHhh---HHhcCCccccchHHHHHHHHHHHHHH-HHh-c--------cCHHHHHHHH-HHHHHHHHHHHHhHHH
Confidence            3445567899   48999996 55555666665444454 332 2        2344444432 2244556667888889


Q ss_pred             hHhhHhcCC
Q 029099           84 VEGDRNVGK   92 (199)
Q Consensus        84 ie~D~~~Gk   92 (199)
                      .+.|+..|+
T Consensus       369 l~~~~~~~~  377 (479)
T PRK08238        369 LRRALQRGK  377 (479)
T ss_pred             HHHHHhcCC
Confidence            998888887

>PLN02776 prenyltransferase

Probab=92.60  E-value=7.4  Score=34.88  Aligned_cols=52  Identities=10%  Similarity=-0.005  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-ccccc---ccChhhHHHHHHHHH
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV---RLGTERGSVVVKWAV  112 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav---~lG~~~a~~l~~~l~  112 (199)
                      ..+..+-..+...+-...||+-|+|-|++..| +.=|.   ++.++.+......+.
T Consensus        31 l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~   86 (341)
T PLN02776         31 LGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVG   86 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            34455566677777889999999999988655 33344   344444444433333

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=92.51  E-value=3.7  Score=35.12  Aligned_cols=53  Identities=15%  Similarity=-0.117  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccC---hhhHHHHHHHHHHHH
Q 029099           62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLG---TERGSVVVKWAVMIL  115 (199)
Q Consensus        62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG---~~~a~~l~~~l~~~~  115 (199)
                      ++..+...+...+....||+-|+|.|+.+. ++=|..-|   ++.+......+..++
T Consensus        41 ~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g   96 (276)
T PRK12882         41 GLAFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG   96 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence            344445556667778899999999999644 44455444   455554444444444

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=92.33  E-value=6.2  Score=34.02  Aligned_cols=41  Identities=12%  Similarity=-0.072  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccChh
Q 029099           62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE  102 (199)
Q Consensus        62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~~  102 (199)
                      ++..+...+...+-...||+-|+|-|++..| +.=|.-=|+-
T Consensus        43 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i   84 (281)
T TIGR01474        43 GLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAV   84 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCc
Confidence            3344444556677779999999999997654 2334434543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=92.14  E-value=5.9  Score=34.12  Aligned_cols=56  Identities=9%  Similarity=-0.063  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---ccccc-ccChhhHHHHHHHHHHHHH
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMILY  116 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk---~Tlav-~lG~~~a~~l~~~l~~~~y  116 (199)
                      .+...+...+...+-...||+-|+|-|++..|   |.+|. ++.++.+......+..++.
T Consensus        38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~   97 (279)
T PRK12869         38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGT   97 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence            34445555666777889999999999998654   44433 3455555544444434333

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=92.08  E-value=7.9  Score=33.99  Aligned_cols=53  Identities=6%  Similarity=-0.093  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCChHhhHhcCC-ccccc---ccChhhHHHHHHHHHHHHH
Q 029099           64 ASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV---RLGTERGSVVVKWAVMILY  116 (199)
Q Consensus        64 ~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav---~lG~~~a~~l~~~l~~~~y  116 (199)
                      ..+...+...+-...||+-|+|-|++..| +.=|.   ++.++.+..+...+..++.
T Consensus        52 ~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~  108 (306)
T PRK13362         52 AVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGF  108 (306)
T ss_pred             HHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            33456677778889999999999997654 23333   3444555444444444443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=91.51  E-value=8.5  Score=33.40  Aligned_cols=57  Identities=11%  Similarity=0.053  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccc-cccChhhHHHHHHHHHHHHHHH
Q 029099           62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPL-VRLGTERGSVVVKWAVMILYSL  118 (199)
Q Consensus        62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk---~Tla-v~lG~~~a~~l~~~l~~~~y~~  118 (199)
                      ++..+...+...+-...||+-|+|-|++..|   |.+| =++.++.+..+...+...+.+.
T Consensus        47 ~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l  107 (296)
T PRK04375         47 LLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLL  107 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            3444445566677789999999999998643   3333 2445555555554444444433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=91.38  E-value=2.9  Score=36.31  Aligned_cols=19  Identities=11%  Similarity=-0.025  Sum_probs=16.4

Q ss_pred             HhcCCCChHhhHhcCCccc
Q 029099           77 FCSHFHQVEGDRNVGKMSP   95 (199)
Q Consensus        77 ~~nn~~Die~D~~~Gk~Tl   95 (199)
                      ..||+.|.|.||++.||..
T Consensus        63 ~iND~~D~D~Dr~~prk~~   81 (282)
T PRK12875         63 GVNDVFDADTDELNPKKDR   81 (282)
T ss_pred             cchhhhhhhccccCCCccC
Confidence            4799999999999888763

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=90.91  E-value=6.1  Score=34.76  Aligned_cols=42  Identities=7%  Similarity=-0.007  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccCh
Q 029099           60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGT  101 (199)
Q Consensus        60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~  101 (199)
                      ...+..+.+...-++=+..||+-|+|-|+++-| ++=|.--|+
T Consensus        48 ~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~   90 (300)
T PRK12876         48 TISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL   90 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence            355677777788888899999999999999885 344444454

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=90.79  E-value=3.6  Score=35.42  Aligned_cols=49  Identities=10%  Similarity=0.064  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccC---hhhHHHHHH
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLG---TERGSVVVK  109 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG---~~~a~~l~~  109 (199)
                      .++..+...+...+....||+-|+|-|++..| ++=|..-|   ++.+..+..
T Consensus        47 ~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~   99 (285)
T PRK12847         47 LVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLF   99 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHH
Confidence            34444455567777789999999999997554 23444344   444444333

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=90.68  E-value=11  Score=32.91  Aligned_cols=54  Identities=6%  Similarity=-0.078  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-ccc---cccChhhHHHHHHHHHH
Q 029099           60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKM-SPL---VRLGTERGSVVVKWAVM  113 (199)
Q Consensus        60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~-Tla---v~lG~~~a~~l~~~l~~  113 (199)
                      ..++..+...+..++-...||+-|+|-|+++-|. .=|   =++.++.|......+..
T Consensus        38 ~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~   95 (286)
T PRK12895         38 KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIA   95 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            3444445556777788899999999999988433 222   23444445444443333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=90.60  E-value=6.1  Score=33.74  Aligned_cols=31  Identities=13%  Similarity=0.044  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 029099           62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK   92 (199)
Q Consensus        62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk   92 (199)
                      +...+...+...+....||+-|.|.|+.+.+
T Consensus        39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~   69 (285)
T PRK12872         39 WLLLLITFLIAAAVYIINYLTDLEEDIINKP   69 (285)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence            3444455666777888999999999997654

>PRK13592 ubiA prenyltransferase; Provisional

Probab=90.18  E-value=8.1  Score=34.05  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=36.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-ccccc-ccChhhHHHHHHHHHHHHHHH
Q 029099           57 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMILYSL  118 (199)
Q Consensus        57 ~~~~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav-~lG~~~a~~l~~~l~~~~y~~  118 (199)
                      ...+.++..+-..+.+.+.-.+||+.|+|-||.+.- |-+|- ++-++.++.+...+...+..+
T Consensus        44 ~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L  107 (299)
T PRK13592         44 IGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLL  107 (299)
T ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            333445545555566677789999999999986542 22222 445566665554554444443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=90.07  E-value=11  Score=32.35  Aligned_cols=56  Identities=13%  Similarity=0.044  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC-Cccccc-ccChhhHHHHHHHHHHHHH
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG-KMSPLV-RLGTERGSVVVKWAVMILY  116 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~G-k~Tlav-~lG~~~a~~l~~~l~~~~y  116 (199)
                      .++..+...+...+....||+-|+|.|+... .|.+|. ++.++.+......+...+.
T Consensus        39 ~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~   96 (279)
T PRK09573         39 IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGL   96 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence            3444555667777778999999999999764 233332 4555666555555544444

>PRK08238 hypothetical protein; Validated

Probab=90.00  E-value=4.4  Score=37.90  Aligned_cols=56  Identities=20%  Similarity=0.143  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC-Cccccc---ccChhhHHHHHHHHHHHHH
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG-KMSPLV---RLGTERGSVVVKWAVMILY  116 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~G-k~Tlav---~lG~~~a~~l~~~l~~~~y  116 (199)
                      .++..+..++..++....||+-|+|.||++- ||.=|.   ++.++.+..+...+..++.
T Consensus       228 ~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~  287 (479)
T PRK08238        228 ALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGL  287 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4455556778888999999999999999984 344444   3445555555544444443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=89.00  E-value=7.2  Score=33.34  Aligned_cols=45  Identities=11%  Similarity=-0.084  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHhcCCCChHhhHhcCCcccccc---cChhhHHHHHHHHH
Q 029099           67 LVGLTTSLILFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKWAV  112 (199)
Q Consensus        67 p~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~---lG~~~a~~l~~~l~  112 (199)
                      ...+...+....||+-|+|.|+.++ ++=|..   +-++.+......+.
T Consensus        45 ~~~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~   92 (277)
T PRK12883         45 VVYLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLF   92 (277)
T ss_pred             HHHHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHH
Confidence            3334446677899999999999754 444444   44555555444333

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=87.69  E-value=4.1  Score=35.77  Aligned_cols=47  Identities=6%  Similarity=-0.123  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCCChHhhHhcCC-cccc-cccChhhHHHHHHHHHHHHH
Q 029099           70 LTTSLILFCSHFHQVEGDRNVGK-MSPL-VRLGTERGSVVVKWAVMILY  116 (199)
Q Consensus        70 l~~~~il~~nn~~Die~D~~~Gk-~Tla-v~lG~~~a~~l~~~l~~~~y  116 (199)
                      +...+.-..||+-|.|.|+++++ |.++ =++.++.+......+..++.
T Consensus        76 l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~  124 (314)
T PRK07566         76 LLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL  124 (314)
T ss_pred             HHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence            34456678999999999997643 2222 24555666665555444433

>PRK13595 ubiA prenyltransferase; Provisional

Probab=87.60  E-value=17  Score=31.83  Aligned_cols=34  Identities=18%  Similarity=0.083  Sum_probs=22.5

Q ss_pred             HHHHhcCCCChHhhHhcCCccccc---ccChhhHHHHH
Q 029099           74 LILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVV  108 (199)
Q Consensus        74 ~il~~nn~~Die~D~~~Gk~Tlav---~lG~~~a~~l~  108 (199)
                      .+--.||+-|.|.|+++.|+- ++   ++.++.++.+.
T Consensus        62 ~~~giND~fD~eiDa~Npr~~-~i~~G~is~~~~~~~~   98 (292)
T PRK13595         62 LIYGLNDLADRETDAASPRKG-GWQGARLSPGEVRPLL   98 (292)
T ss_pred             HHHHHHhhhhhhhhccCCCCC-CCCcCccCHHHHHHHH
Confidence            445799999999999877653 33   34444444433

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=87.52  E-value=11  Score=32.65  Aligned_cols=62  Identities=10%  Similarity=-0.101  Sum_probs=34.5

Q ss_pred             chHHHHHHHH-HHHHHHHHHHHhcCCCChHhhHhcCCcc------ccc-ccChhhHHHHHHHHHHHHHHH
Q 029099           57 ITATVLSASL-LVGLTTSLILFCSHFHQVEGDRNVGKMS------PLV-RLGTERGSVVVKWAVMILYSL  118 (199)
Q Consensus        57 ~~~~~l~~sl-p~~l~~~~il~~nn~~Die~D~~~Gk~T------lav-~lG~~~a~~l~~~l~~~~y~~  118 (199)
                      +++...+... ...+...+.-..||.-|.|.|+...+||      ++- ++-++.+......+..++...
T Consensus        37 f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~  106 (296)
T PRK05951         37 FDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQL  106 (296)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHH
Confidence            4555444443 4445556667899999977766665443      221 244566665555544444333

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=87.42  E-value=18  Score=31.14  Aligned_cols=50  Identities=12%  Similarity=0.043  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHhhHhcCC---ccccc-ccChhhHHHHHHHHHHHH
Q 029099           66 LLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMIL  115 (199)
Q Consensus        66 lp~~l~~~~il~~nn~~Die~D~~~Gk---~Tlav-~lG~~~a~~l~~~l~~~~  115 (199)
                      +...+...+-...||+-|.|-|++..|   |.+|- ++.++.+......+..++
T Consensus        49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~  102 (282)
T PRK12848         49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA  102 (282)
T ss_pred             HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            333455677789999999999986554   33332 334444444444443333

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=87.38  E-value=19  Score=31.32  Aligned_cols=41  Identities=7%  Similarity=-0.059  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccCh
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGT  101 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~  101 (199)
                      ..+..+...+...+-...||+-|+|-|++..| +.=|..=|+
T Consensus        44 l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~   85 (291)
T PRK12886         44 LDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGL   85 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCC
Confidence            44455555566666778899999999998753 123444553

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=87.26  E-value=4.8  Score=35.37  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=21.2

Q ss_pred             HhcCCCChHhhHhcCCcccccc---cChhhHHHHHH
Q 029099           77 FCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVK  109 (199)
Q Consensus        77 ~~nn~~Die~D~~~Gk~Tlav~---lG~~~a~~l~~  109 (199)
                      -.||+-|+|.||.+ |++.|+-   +-++.++.+..
T Consensus        71 ~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~  105 (308)
T PRK12887         71 GLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVI  105 (308)
T ss_pred             HHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHH
Confidence            39999999999964 5666654   44444444443

>PLN00012 chlorophyll synthetase; Provisional

Probab=86.97  E-value=12  Score=33.89  Aligned_cols=50  Identities=8%  Similarity=-0.124  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhcCCCChHhhHhcCCccccc---ccChhhHHHHHHHHHHHHHHH
Q 029099           68 VGLTTSLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSL  118 (199)
Q Consensus        68 ~~l~~~~il~~nn~~Die~D~~~Gk~Tlav---~lG~~~a~~l~~~l~~~~y~~  118 (199)
                      ..+...+.-..||+-|.|.|++.+ ++=|+   ++.++.+......+...+..+
T Consensus       132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~~~l~l  184 (375)
T PLN00012        132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLGGLGL  184 (375)
T ss_pred             HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHHHHHHH
Confidence            334455566899999999998875 23333   344555555444444434333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=86.94  E-value=12  Score=32.67  Aligned_cols=21  Identities=10%  Similarity=-0.032  Sum_probs=17.1

Q ss_pred             HhcCCCChHhhHhcCCccccc
Q 029099           77 FCSHFHQVEGDRNVGKMSPLV   97 (199)
Q Consensus        77 ~~nn~~Die~D~~~Gk~Tlav   97 (199)
                      -.||+-|.|.|+.+.||.=+.
T Consensus        52 ~~Ndy~D~~~d~dn~r~~g~~   72 (282)
T PRK13105         52 GINDVFDYESDLRNPRKGGVE   72 (282)
T ss_pred             hhhhhhhhhcCCCCcccCCCC
Confidence            569999999999988775543

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=86.69  E-value=6.1  Score=35.14  Aligned_cols=44  Identities=14%  Similarity=0.127  Sum_probs=28.5

Q ss_pred             HHHHhcCCCChHhhHhcCCccccc---ccChhhHHHHHHHHHHHHHHH
Q 029099           74 LILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSL  118 (199)
Q Consensus        74 ~il~~nn~~Die~D~~~Gk~Tlav---~lG~~~a~~l~~~l~~~~y~~  118 (199)
                      +-...||+-|.|.|+.++ ||=|.   ++.++.+......+..++.++
T Consensus        65 a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~l  111 (331)
T PRK12392         65 FSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGL  111 (331)
T ss_pred             HHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHH
Confidence            346799999999999764 44443   344666666666555544433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=86.43  E-value=6.7  Score=34.68  Aligned_cols=27  Identities=15%  Similarity=0.041  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCChHhhHhc
Q 029099           64 ASLLVGLTTSLILFCSHFHQVEGDRNV   90 (199)
Q Consensus        64 ~slp~~l~~~~il~~nn~~Die~D~~~   90 (199)
                      .++..++.+.+....||.-|+|.|+-+
T Consensus        63 ~~~~~~L~~~s~~~iNd~~D~eiD~IN   89 (307)
T PRK13591         63 TCIAGGLIIYSVYTLDRALDSEEDAVN   89 (307)
T ss_pred             HHHHHHHHHHHHHHHhhhccchhhhcc
Confidence            455667778888899999999999875

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=86.27  E-value=20  Score=30.64  Aligned_cols=56  Identities=9%  Similarity=0.020  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---ccccc-ccChhhHHHHHHHHHHHHH
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMILY  116 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk---~Tlav-~lG~~~a~~l~~~l~~~~y  116 (199)
                      .++..+...+...+-...||+-|+|-|++..|   |.+|- ++.++.+..+...+...+.
T Consensus        37 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~   96 (280)
T TIGR01473        37 LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGV   96 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            34445556677777789999999999997543   43333 4445555555544444433

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=86.09  E-value=23  Score=31.05  Aligned_cols=31  Identities=10%  Similarity=-0.006  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG   91 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~G   91 (199)
                      .++..+...+..++-...||+-|+|-|++..
T Consensus        51 l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~   81 (300)
T PRK13106         51 LILIFLALFFLRTAGMTNDNLADLEIDAKNP   81 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            3445555667777778899999999999874

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=85.68  E-value=17  Score=31.51  Aligned_cols=40  Identities=10%  Similarity=-0.130  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-ccccccCh
Q 029099           62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKM-SPLVRLGT  101 (199)
Q Consensus        62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~-Tlav~lG~  101 (199)
                      ++..+...+..++-...||+-|+|-|++..|. .=|.-=|+
T Consensus        49 ~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~   89 (290)
T PRK12870         49 GIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRR   89 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence            34444455667777899999999999865542 33433343

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=85.01  E-value=18  Score=31.61  Aligned_cols=54  Identities=9%  Similarity=0.034  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhcCCCChHhhHhc-----CC-----cccc---cccChhhHHHHHHHHHHHHHHH
Q 029099           65 SLLVGLTTSLILFCSHFHQVEGDRNV-----GK-----MSPL---VRLGTERGSVVVKWAVMILYSL  118 (199)
Q Consensus        65 slp~~l~~~~il~~nn~~Die~D~~~-----Gk-----~Tla---v~lG~~~a~~l~~~l~~~~y~~  118 (199)
                      .+...+...+-...||+-|.|.|+.+     +|     ++=|   =++-++.+..+...+..++..+
T Consensus        47 ~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l  113 (297)
T PRK12871         47 ALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL  113 (297)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            33333334444599999999999753     11     1222   2456666666666655555444

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.44  E-value=28  Score=30.63  Aligned_cols=31  Identities=6%  Similarity=-0.166  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG   91 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~G   91 (199)
                      .++..+...+...+-...||+-|.|-|++..
T Consensus        74 ~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~  104 (314)
T PRK12878         74 LFLFFVGAIAMRGAGCTYNDIVDRDIDAKVA  104 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            3444444556666778999999999998754

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=82.75  E-value=31  Score=29.94  Aligned_cols=30  Identities=7%  Similarity=0.040  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 029099           63 SASLLVGLTTSLILFCSHFHQVEGDRNVGK   92 (199)
Q Consensus        63 ~~slp~~l~~~~il~~nn~~Die~D~~~Gk   92 (199)
                      +..+...+...+-...||+-|+|-|++..|
T Consensus        51 l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R   80 (291)
T PRK12874         51 LGILAAVSARNFAMAFNRLVDRDIDKDNPR   80 (291)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence            333344455556678899999999998853

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=81.76  E-value=10  Score=32.57  Aligned_cols=46  Identities=7%  Similarity=-0.174  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCChHhhHhcCC-ccccc-ccChhhHHHHHHHHHHHH
Q 029099           70 LTTSLILFCSHFHQVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMIL  115 (199)
Q Consensus        70 l~~~~il~~nn~~Die~D~~~Gk-~Tlav-~lG~~~a~~l~~~l~~~~  115 (199)
                      +...+.-..||+-|.|.|+++++ |.++. ++-++.+..+...+..++
T Consensus        49 l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~   96 (283)
T TIGR01476        49 LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAG   96 (283)
T ss_pred             HHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            34445558999999999998653 32222 445566666554444433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=81.72  E-value=34  Score=29.62  Aligned_cols=32  Identities=9%  Similarity=0.060  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 029099           61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK   92 (199)
Q Consensus        61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk   92 (199)
                      .++..+...+...+-...||+-|+|-|+++.|
T Consensus        41 ~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~R   72 (284)
T PRK12888         41 LLLVTVAMVGARTFAMAANRIIDREIDARNPR   72 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCC
Confidence            44555566677778889999999999998853

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00