Citrus Sinensis ID: 029156

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLTSFSLIVTLFL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccEEEEEEccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEEccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
migvgkikqysnvldkplskgkqeVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHrdkgnrreTRLLGILSFVHSTVWKVLFGKVADslekgtehedeYMISEKELLVNRFisipkdmgtfncgAFVAGIVRGvldsagfpavvtahfvpvegqqrprtTILIKFAEEVLTSFSLIVTLFL
Flexible Loop (DISEMBL)
migvgkikqysnvldkplskGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLchrdkgnrreTRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAhfvpvegqqrpRTTILIKFAEEVLTSFSLIVTLFL
Low Complexity Region (SEG)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLTSFSLIVTLFL
Disordered region (IsUnstruct)
************************VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLTSFSLIVTLF*
Disordered Region (DISOPRED)
*****************************FAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLTSFSLIVTLFL
Disordered Region (DISEMBL)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLTSFSLIVTLFL
Disordered Region (DISPRO)
****************PLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLTSFSLIVTLFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLTSFSLIVTLFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q54YG5	186	Trafficking protein parti	yes	no	0.888	0.946	0.613	2e-62
Q9P7N9	209	Transport protein particl	yes	no	0.828	0.784	0.527	6e-46
Q8IUR0	188	Trafficking protein parti	yes	no	0.858	0.904	0.508	5e-43
Q2NL13	188	Trafficking protein parti	yes	no	0.858	0.904	0.508	7e-43
Q9CQA1	188	Trafficking protein parti	yes	no	0.858	0.904	0.508	1e-42
Q5F359	188	Trafficking protein parti	yes	no	0.863	0.909	0.483	2e-42
P15847	184	Trafficking protein parti	yes	no	0.863	0.929	0.442	4e-32
Q7KQM2	184	Trafficking protein parti	yes	no	0.863	0.929	0.442	4e-32
Q03337	283	Trafficking protein parti	yes	no	0.545	0.381	0.424	1e-17
Q8SU25	155	Putative trafficking prot	yes	no	0.686	0.877	0.281	5e-09

>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 144/176 (81%)

Query: 12  NVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
           N++D+PLSKGK E+++S+FAFLFSE++QY Q ++    ELE++L D GY++G R+LELLC
Sbjct: 7   NIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66

Query: 72  HRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI 131
            R+K ++RET+LLGILSF+H+TVWK LFGK ADSLEK TE +DEYMIS+  ++VN+FIS+
Sbjct: 67  VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126

Query: 132 PKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF  EV+
Sbjct: 127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVI 182

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1

 Score =  183 bits (465), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 117/165 (70%), Gaps = 1/165 (0%)

Query: 24  EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRL 83
           +V+LS+FAF+FSEL+Q  Q+QV  I E E +L + GY VG +++EL+  R++  +RETR+
Sbjct: 40  DVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRI 99

Query: 84  LGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAF 143
           LGIL ++HS+VWK LFGK ADSLEK  E  DEYMI +   L+N+FIS+PK+M   NC A+
Sbjct: 100 LGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 144 VAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLT 188
           +AGI+ G LDSA FP   +AH VP+  Q   RT ILIK    V+ 
Sbjct: 160 LAGIIEGFLDSAQFPCKASAHSVPL-SQYPYRTVILIKLDPSVIA 203

TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1

 Score =  174 bits (440), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 120/177 (67%), Gaps = 7/177 (3%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVI 179

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1

 Score =  173 bits (438), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 119/177 (67%), Gaps = 7/177 (3%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V  +AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVI 179

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1

 Score =  172 bits (436), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 119/177 (67%), Gaps = 7/177 (3%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L + + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVI 179

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 120/178 (67%), Gaps = 7/178 (3%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++PL + + EVSLSAFA LF ELVQY Q +V ++AEL+ +L   G+ VG R+L+ L
Sbjct: 10  SPLLERPLGRPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R++G RRET++L +L FV   VW+ LFGK AD LE+  + +  Y + E+E LVN FIS
Sbjct: 70  VSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLT 188
           +P++  T NC AF AG+V  VL ++GFPA VTAH+          TT++IKF E V+ 
Sbjct: 130 VPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHW-------HKGTTLMIKFEEGVIA 180

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Gallus gallus (taxid: 9031)

>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1

 Score =  137 bits (346), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 108/174 (62%), Gaps = 3/174 (1%)

Query: 14  LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
           ++K L++ KQ+VSLSAF+ LFSE+VQY   +      +E  L + G  VG ++ E L ++
Sbjct: 8   IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYK 67

Query: 74  DKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK 133
           +K  +R   ++ IL+F+   VWK LF   +D L K  +   EYMI +K +L+N+FI++PK
Sbjct: 68  NKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPK 125

Query: 134 DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           D G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  EV+
Sbjct: 126 DYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPEVV 178

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (taxid: 5833)

>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1

 Score =  137 bits (346), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 108/174 (62%), Gaps = 3/174 (1%)

Query: 14  LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
           ++K L++ KQ+VSLSAF+ LFSE+VQY   +      +E  L + G  VG ++ E L ++
Sbjct: 8   IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYK 67

Query: 74  DKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK 133
           +K  +R   ++ IL+F+   VWK LF   +D L K  +   EYMI +K +L+N+FI++PK
Sbjct: 68  NKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPK 125

Query: 134 DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           D G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  EV+
Sbjct: 126 DYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPEVV 178

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 5/113 (4%)

Query: 75  KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
           K  RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +F  IP +
Sbjct: 168 KMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQF--IPGE 225

Query: 135 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
               +C  FV GI++G L +AGFP  VTAH +P +G    RT  LI+F  +VL
Sbjct: 226 --NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMP-QGGHSQRTVYLIQFDRQVL 275

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 17/153 (11%)

Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K+EV +S  ++L   +++Y   Q  +I   E  L+  GY VG ++LEL C+ ++  R  T
Sbjct: 2   KREVPVSTMSYLVCGMIEYLMEQRSDI---EADLKSIGYEVGIKLLEL-CNFEREVRIST 57

Query: 82  RL----LGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT 137
            L      +LS V  +  +V         EK  + +  Y++++ + L +RFIS+P +   
Sbjct: 58  LLYRATFDLLSLVSDSDRRV---------EKARDVDRTYLLTDSDGLFSRFISVPDEWNG 108

Query: 138 FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEG 170
            +  + V G+++  L ++G+ + VTA   P E 
Sbjct: 109 LSADSIVCGMIQAALMASGYDSEVTAFPEPSEN 141

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
224088250	194	predicted protein [Populus trichocarpa]	0.944	0.963	0.989	1e-104
225445877	194	PREDICTED: trafficking protein particle	0.944	0.963	0.989	1e-104
255565009	194	Transport protein particle subunit trs31	0.944	0.963	0.983	1e-103
388508112	194	unknown [Lotus japonicus]	0.944	0.963	0.967	1e-102
449445664	194	PREDICTED: trafficking protein particle	0.949	0.969	0.962	1e-102
224143977	194	predicted protein [Populus trichocarpa]	0.944	0.963	0.973	1e-102
297796721	195	transport protein particle component Bet	0.944	0.958	0.957	1e-102
351721839	194	uncharacterized protein LOC100527008 [Gl	0.944	0.963	0.967	1e-101
388496864	194	unknown [Lotus japonicus]	0.944	0.963	0.957	1e-101
351722761	194	uncharacterized protein LOC100500147 [Gl	0.944	0.963	0.962	1e-101

>gi|224088250|ref|XP_002308390.1| predicted protein [Populus trichocarpa] gi|118483059|gb|ABK93439.1| unknown [Populus trichocarpa] gi|222854366|gb|EEE91913.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/187 (98%), Positives = 187/187 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVL+KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLEKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVL 187
           KFAEEVL
Sbjct: 181 KFAEEVL 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445877|ref|XP_002279200.1| PREDICTED: trafficking protein particle complex subunit 5 [Vitis vinifera] gi|297743638|emb|CBI36521.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/187 (98%), Positives = 186/187 (99%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQ QVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQAQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVL 187
           KFAEEVL
Sbjct: 181 KFAEEVL 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565009|ref|XP_002523497.1| Transport protein particle subunit trs31, putative [Ricinus communis] gi|223537204|gb|EEF38836.1| Transport protein particle subunit trs31, putative [Ricinus communis]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/187 (98%), Positives = 187/187 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVH+TVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHTTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVL 187
           KFAEEVL
Sbjct: 181 KFAEEVL 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508112|gb|AFK42122.1| unknown [Lotus japonicus]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/187 (96%), Positives = 186/187 (99%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSNVLDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVL 187
           KFAEEVL
Sbjct: 181 KFAEEVL 187

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445664|ref|XP_004140592.1| PREDICTED: trafficking protein particle complex subunit 5-like [Cucumis sativus] gi|449521790|ref|XP_004167912.1| PREDICTED: trafficking protein particle complex subunit 5-like [Cucumis sativus]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/188 (96%), Positives = 185/188 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVL+KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLEKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLEL CHR+KGNRRETRLLGILSFVHST+WKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELFCHREKGNRRETRLLGILSFVHSTIWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMG FNCGAFVAGIVRGVLD+AGFPAVVTAHFVPVEGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPVEGQQRPRTTILI 180

Query: 181 KFAEEVLT 188
           KFAEEVL 
Sbjct: 181 KFAEEVLA 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143977|ref|XP_002325144.1| predicted protein [Populus trichocarpa] gi|118489123|gb|ABK96368.1| unknown [Populus trichocarpa x Populus deltoides] gi|222866578|gb|EEF03709.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/187 (97%), Positives = 183/187 (97%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVS SAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSSSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQ RPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQHRPRTTILI 180

Query: 181 KFAEEVL 187
           KF EEVL
Sbjct: 181 KFGEEVL 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796721|ref|XP_002866245.1| transport protein particle component Bet3 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312080|gb|EFH42504.1| transport protein particle component Bet3 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/187 (95%), Positives = 187/187 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSNVLDKPLSKGKQEVSL+AFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVG+RVLELLC+R+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILI 180

Query: 181 KFAEEVL 187
           KFAEEVL
Sbjct: 181 KFAEEVL 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721839|ref|NP_001237223.1| uncharacterized protein LOC100527008 [Glycine max] gi|255631356|gb|ACU16045.1| unknown [Glycine max]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/187 (96%), Positives = 184/187 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLC RDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCRRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVL 187
           KFAEEVL
Sbjct: 181 KFAEEVL 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496864|gb|AFK36498.1| unknown [Lotus japonicus]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/187 (95%), Positives = 185/187 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSN+LDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNILDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPR TILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRMTILI 180

Query: 181 KFAEEVL 187
           KFAEEVL
Sbjct: 181 KFAEEVL 187

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722761|ref|NP_001237511.1| uncharacterized protein LOC100500147 [Glycine max] gi|255629460|gb|ACU15076.1| unknown [Glycine max]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/187 (96%), Positives = 184/187 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPL++GKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLTRGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLL ILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLNILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEEVL 187
           KFAEEVL
Sbjct: 181 KFAEEVL 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2147770	195	AT5G58030 "AT5G58030" [Arabido	0.944	0.958	0.951	8.1e-92
DICTYBASE|DDB_G0278643	186	trappc5 "trafficking protein p	0.888	0.946	0.613	3.3e-56
POMBASE|SPBC1718.05	209	trs31 "TRAPP complex subunit T	0.883	0.837	0.508	5.2e-42
UNIPROTKB|Q5F359	188	TRAPPC5 "Trafficking protein p	0.858	0.904	0.491	1.8e-39
UNIPROTKB|F1MSD6	188	TRAPPC5 "Trafficking protein p	0.858	0.904	0.514	2.3e-39
UNIPROTKB|Q8IUR0	188	TRAPPC5 "Trafficking protein p	0.858	0.904	0.514	2.3e-39
UNIPROTKB|F1SCJ1	188	TRAPPC5 "Uncharacterized prote	0.858	0.904	0.514	2.3e-39
UNIPROTKB|Q2NL13	188	TRAPPC5 "Trafficking protein p	0.858	0.904	0.514	2.9e-39
ZFIN|ZDB-GENE-040718-185	188	trappc5 "trafficking protein p	0.858	0.904	0.485	2.9e-39
UNIPROTKB|E2RBU4	188	TRAPPC5 "Uncharacterized prote	0.858	0.904	0.514	4.8e-39

TAIR|locus:2147770 AT5G58030 "AT5G58030" [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 178/187 (95%), Positives = 187/187 (100%)

Query:     1 MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
             MIGVGK+KQYSNVLDKPLSKGKQEVSL+AFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct:     1 MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query:    61 AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
             AVG+RVLELLC+R+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct:    61 AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query:   121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
             KELLVNRFISIPKDMGTFNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct:   121 KELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILI 180

Query:   181 KFAEEVL 187
             KFA+EVL
Sbjct:   181 KFADEVL 187

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0278643 trappc5 "trafficking protein particle complex subunit 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 108/176 (61%), Positives = 144/176 (81%)

Query:    12 NVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
             N++D+PLSKGK E+++S+FAFLFSE++QY Q ++    ELE++L D GY++G R+LELLC
Sbjct:     7 NIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66

Query:    72 HRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI 131
              R+K ++RET+LLGILSF+H+TVWK LFGK ADSLEK TE +DEYMIS+  ++VN+FIS+
Sbjct:    67 VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126

Query:   132 PKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF  EV+
Sbjct:   127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVI 182

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC1718.05 trs31 "TRAPP complex subunit Trs31 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 90/177 (50%), Positives = 125/177 (70%)

Query:    12 NVLDKPLSKGKQ-EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             +V ++ L+K +  +V+LS+FAF+FSEL+Q  Q+QV  I E E +L + GY VG +++EL+
Sbjct:    27 SVYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELV 86

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R++  +RETR+LGIL ++HS+VWK LFGK ADSLEK  E  DEYMI +   L+N+FIS
Sbjct:    87 VWRERNPKRETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFIS 146

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             +PK+M   NC A++AGI+ G LDSA FP   +AH VP+  Q   RT ILIK    V+
Sbjct:   147 VPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPLS-QYPYRTVILIKLDPSVI 202

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0032313 "regulation of Rab GTPase activity" evidence=IC

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

UNIPROTKB|Q5F359 TRAPPC5 "Trafficking protein particle complex subunit 5" [Gallus gallus (taxid:9031)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 87/177 (49%), Positives = 122/177 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++PL + + EVSLSAFA LF ELVQY Q +V ++AEL+ +L   G+ VG R+L+ L
Sbjct:    10 SPLLERPLGRPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R++G RRET++L +L FV   VW+ LFGK AD LE+  + +  Y + E+E LVN FIS
Sbjct:    70 VSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             +P++  T NC AF AG+V  VL ++GFPA VTAH+   +G     TT++IKF E V+
Sbjct:   130 VPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHWH--KG-----TTLMIKFEEGVI 179

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1MSD6 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 91/177 (51%), Positives = 122/177 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVI 179

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|Q8IUR0 TRAPPC5 "Trafficking protein particle complex subunit 5" [Homo sapiens (taxid:9606)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 91/177 (51%), Positives = 122/177 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVI 179

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1SCJ1 TRAPPC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 91/177 (51%), Positives = 122/177 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVI 179

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|Q2NL13 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 91/177 (51%), Positives = 121/177 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V  +AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVI 179

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

ZFIN|ZDB-GENE-040718-185 trappc5 "trafficking protein particle complex 5" [Danio rerio (taxid:7955)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 86/177 (48%), Positives = 121/177 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L
Sbjct:    10 SAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS
Sbjct:    70 VMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             +PK+  T NC AF  GIV  +L  +GFPA VT H+   +G     TT++IKF E V+
Sbjct:   130 VPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH--KG-----TTLMIKFDESVI 179

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2RBU4 TRAPPC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 91/177 (51%), Positives = 121/177 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L + + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINAYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E V+
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEEAVI 179

GO:0030008 "TRAPP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54YG5	TPPC5_DICDI	No assigned EC number	0.6136	0.8888	0.9462	yes	no
Q2NL13	TPPC5_BOVIN	No assigned EC number	0.5084	0.8585	0.9042	yes	no
Q8IUR0	TPPC5_HUMAN	No assigned EC number	0.5084	0.8585	0.9042	yes	no
Q7KQM2	TPPC5_PLAF7	No assigned EC number	0.4425	0.8636	0.9293	yes	no
Q9CQA1	TPPC5_MOUSE	No assigned EC number	0.5084	0.8585	0.9042	yes	no
Q9P7N9	TRS31_SCHPO	No assigned EC number	0.5272	0.8282	0.7846	yes	no
Q5F359	TPPC5_CHICK	No assigned EC number	0.4831	0.8636	0.9095	yes	no
P15847	TPPC5_PLAFA	No assigned EC number	0.4425	0.8636	0.9293	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
PTZ00391	168	PTZ00391, PTZ00391, transport protein particle com	1e-69
COG5128	208	COG5128, COG5128, Transport protein particle (TRAP	2e-57
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	2e-51

>gnl|CDD|240398 PTZ00391, PTZ00391, transport protein particle component (TRAPP) superfamily; Provisional

 Score =  208 bits (532), Expect = 1e-69
 Identities = 86/163 (52%), Positives = 113/163 (69%), Gaps = 2/163 (1%)

Query: 25  VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLL 84
           VSLS+FAFLFSE+VQY  ++      LE +L + G  VG ++ ELL +R+K  +RET++L
Sbjct: 1   VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKIL 60

Query: 85  GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFV 144
            IL+F+   VWK LFG  +D L K  + +DEYMI++K LL+N+FIS+PKD+G  NC AF 
Sbjct: 61  SILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFA 119

Query: 145 AGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           AGIV G+L SA FPA VTAH V     +   TTILIKF  EV+
Sbjct: 120 AGIVEGILCSAEFPANVTAHTVEDTP-KNFSTTILIKFYPEVI 161

Length = 168

>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score =  179 bits (456), Expect = 2e-57
 Identities = 72/177 (40%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
            +V ++ L   K+EV LS  AFLF E+++Y   Q   I + E +L+  GY VG ++LEL 
Sbjct: 26  KSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELC 85

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R +  +RE R+L IL  +H  +W  LFG   D LEK  E + EYMI + + L++RFIS
Sbjct: 86  NFRRRNPKREVRILTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFIS 145

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           +P +    +C + V GI++G L +AGFP  VTAH  P E     RT  LI+  + V+
Sbjct: 146 VPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSENLPN-RTVFLIRIDDLVI 201

Length = 208

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  161 bits (411), Expect = 2e-51
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 9/157 (5%)

Query: 29  AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILS 88
            FA L+ ELV Y    V+   ++  RLE  GY +G R++E L  R    +R T LL +L 
Sbjct: 1   LFALLYGELVSYLLRDVE---DVNARLEKMGYNIGQRLIERLLARSGS-KRCTDLLEVLK 56

Query: 89  FVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIV 148
           F+   +WK+LFGK AD LE  T H+ EY++ + +  +++F+ +P D    N   F+ GI+
Sbjct: 57  FICKDLWKMLFGKQADVLE--TSHDGEYVLIDNDNPLSQFVELPPDYSGLNYLNFLCGII 114

Query: 149 RGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
           RG L S GFPA VTAH  P+ G   P T   IKF + 
Sbjct: 115 RGALSSLGFPAKVTAHSDPLRG---PGTVFEIKFEKS 148

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PTZ00391	168	transport protein particle component (TRAPP) super	100.0
KOG3315	191	consensus Transport protein particle (TRAPP) compl	100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
COG5128	208	Transport protein particle (TRAPP) complex subunit	100.0
KOG3316	163	consensus Transport protein particle (TRAPP) compl	100.0
KOG3330	183	consensus Transport protein particle (TRAPP) compl	100.0
COG1719	158	Predicted hydrocarbon binding protein (contains V4	95.29
TIGR02019	188	BchJ bacteriochlorophyll 4-vinyl reductase. This m	89.18

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=100.00  E-value=6.6e-60  Score=384.22  Aligned_cols=166  Identities=52%  Similarity=0.805  Sum_probs=159.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccc
Q 029156           25 VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVAD  104 (198)
Q Consensus        25 Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D  104 (198)
                      ||+|+|+|||+|||+|+++++++.+|++++|+.+||+||.||+|++..|++..+|+++++++|+|||+++|+.+||||+|
T Consensus         1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD   80 (168)
T PTZ00391          1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD   80 (168)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence            79999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             cccccc-CCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEec
Q 029156          105 SLEKGT-EHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFA  183 (198)
Q Consensus       105 ~Le~~t-n~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~  183 (198)
                      +|  +| +|+|+|||+|++|++++++|+|+++++++|++|+||||||||+++||+|+||||+++++..+. +|+|.|||+
T Consensus        81 ~L--kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~-~t~~likf~  157 (168)
T PTZ00391         81 LL--KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNF-STTILIKFY  157 (168)
T ss_pred             hh--cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCC-ceEEEEEec
Confidence            99  56 588999999999999999999999999999999999999999999999999999998776533 999999999


Q ss_pred             hHHHhhhhhh
Q 029156          184 EEVLTSFSLI  193 (198)
Q Consensus       184 ~~v~~re~~~  193 (198)
                      ++|++||+++
T Consensus       158 ~~v~~Re~~~  167 (168)
T PTZ00391        158 PEVIEREKSI  167 (168)
T ss_pred             HHHHHHHhhc
Confidence            9999999975

>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-57  Score=363.92  Aligned_cols=186  Identities=59%  Similarity=0.942  Sum_probs=178.5

Q ss_pred             ccCCCCCCCccccccCccCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccc
Q 029156            3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR   82 (198)
Q Consensus         3 ~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~   82 (198)
                      ..+....+++|||+||.+++.|||.|+|+|||+|||+|+++++.++.|++.+|.+.||+||.||+|.+..|+|.++|+++
T Consensus         5 ~~s~~~~~s~il~~~L~~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREtk   84 (191)
T KOG3315|consen    5 KASTMRIPSNILDKSLSKGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRETK   84 (191)
T ss_pred             cccccccccchhhhhhhccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHHH
Confidence            34455668899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEE
Q 029156           83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVT  162 (198)
Q Consensus        83 ~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vt  162 (198)
                      ++++|.||+.++||.+|||.+|+|||.+++..+|+|+|++|++++|||+|++++.+||++|+||||+|+|.+.||||.||
T Consensus        85 ilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVT  164 (191)
T KOG3315|consen   85 ILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVT  164 (191)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCceEEEEEechHHHhhhhhhh
Q 029156          163 AHFVPVEGQQRPRTTILIKFAEEVLTSFSLIV  194 (198)
Q Consensus       163 a~~~~~~~~~~p~~~f~Ik~~~~v~~re~~~~  194 (198)
                      ||+.|      .+|++.|||+++|++||++++
T Consensus       165 Ah~~P------~gt~~~IkF~~~Viare~~l~  190 (191)
T KOG3315|consen  165 AHWHP------EGTTYLIKFDESVIAREGLLE  190 (191)
T ss_pred             eeecC------CCCeEEEEecHHHHhhhhhhc
Confidence            99985      269999999999999999875

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=9.4e-50  Score=319.76  Aligned_cols=151  Identities=46%  Similarity=0.785  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 029156           29 AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEK  108 (198)
Q Consensus        29 ~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~  108 (198)
                      +|+|||+|||+|++++. +.++++++|++|||+||.||+|+++.+.+..+|+++++|+++||||++|+++||||+|+|  
T Consensus         1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l--   77 (152)
T PF04051_consen    1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNL--   77 (152)
T ss_dssp             HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEE--
T ss_pred             CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccc--
Confidence            69999999999999944 899999999999999999999999999667899999999999999999999999999999  


Q ss_pred             ccCC-CCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechH
Q 029156          109 GTEH-EDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE  185 (198)
Q Consensus       109 ~tn~-~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~  185 (198)
                      ++|| +|+|+|+|++|+|++++++|++++.++|++|+||||||||+++||+|+|||+..+.   ..|+|+|+|||++.
T Consensus        78 ~~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~---~~~~~~f~Ik~~~~  152 (152)
T PF04051_consen   78 KTNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPL---NGPQTTFQIKFEKQ  152 (152)
T ss_dssp             EEETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCC---GTTEEEEEEEEEHH
T ss_pred             cccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEecc---CCCCeEEEEEEecC
Confidence            7888 99999999999999999999988899999999999999999999999999999854   24799999999864

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-49  Score=320.63  Aligned_cols=182  Identities=40%  Similarity=0.685  Sum_probs=174.9

Q ss_pred             CCccccccCccCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHH
Q 029156           10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSF   89 (198)
Q Consensus        10 ~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkf   89 (198)
                      ...||+++|.-.+.+||.|+|+|||.||++|+++..+...|+|.+|.++||+||.||+|++..|.++.+|+.+++++++|
T Consensus        25 ~~~vy~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq~  104 (208)
T COG5128          25 GKSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQR  104 (208)
T ss_pred             chhHHHHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHHH
Confidence            56789999966679999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             HHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCC
Q 029156           90 VHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVE  169 (198)
Q Consensus        90 I~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~  169 (198)
                      |+.++|+++||+..|.|||..+..++|+|+||+|++++|||+|+++++++|.+|+||||+|+|.+.||+|.||||..|.+
T Consensus       105 ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~~  184 (208)
T COG5128         105 IHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSE  184 (208)
T ss_pred             HHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCceEEEEEechHHHhhhhh
Q 029156          170 GQQRPRTTILIKFAEEVLTSFSL  192 (198)
Q Consensus       170 ~~~~p~~~f~Ik~~~~v~~re~~  192 (198)
                      ..++ +|+|+|++++.|++||..
T Consensus       185 ~~p~-Rtv~lI~~d~~vi~re~v  206 (208)
T COG5128         185 NLPN-RTVFLIRIDDLVIAREEV  206 (208)
T ss_pred             CCCc-ceEEEEEecHHHHhhhhh
Confidence            7666 999999999999999976

>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-45  Score=289.30  Aligned_cols=148  Identities=26%  Similarity=0.415  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCC---------hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH
Q 029156           27 LSAFAFLFSELVQYNQTQVDN---------IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV   97 (198)
Q Consensus        27 ~s~f~~L~~EiV~y~~~~~~~---------~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~   97 (198)
                      .-+|++|+.|||.++.+..+|         ..+..++||.|||+||++|.|+++   ++++|+.|.+|+|||||||+|+.
T Consensus         4 ~v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~---~e~~rf~deLeimKFiCkDfW~~   80 (163)
T KOG3316|consen    4 EVLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT---RERNRFKDELEIMKFICKDFWSI   80 (163)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHH
Confidence            346999999999998886443         234779999999999999999999   56889999999999999999999


Q ss_pred             hhcccccccccccCCCCeEEEEeCCcccccccccCCCCCC--ccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCc
Q 029156           98 LFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT--FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPR  175 (198)
Q Consensus        98 lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~--l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~  175 (198)
                      +|+||+|||  +|||+|+||++|+.|+|++.+|...++..  ..|++|+||+|||+|.+||++|.|||++.     ..|.
T Consensus        81 VF~KQiDNL--rTNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~-----slPt  153 (163)
T KOG3316|consen   81 VFKKQIDNL--RTNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS-----SLPT  153 (163)
T ss_pred             HHhhhhhhc--cccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC-----CCCc
Confidence            999999999  99999999999999999998886665532  36999999999999999999999999997     6899


Q ss_pred             eEEEEEech
Q 029156          176 TTILIKFAE  184 (198)
Q Consensus       176 ~~f~Ik~~~  184 (198)
                      |.|+|++.+
T Consensus       154 ckFhV~v~~  162 (163)
T KOG3316|consen  154 CKFHVQVQP  162 (163)
T ss_pred             eEEEEEecC
Confidence            999999875

>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=236.03  Aligned_cols=165  Identities=15%  Similarity=0.295  Sum_probs=150.1

Q ss_pred             cCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156           20 KGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (198)
Q Consensus        20 ~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF   99 (198)
                      +...++|+++|.++|++||.++++++++.++++++|++|||+||.||+|.+++|+ .-+||.|+.++...|||..+|+++
T Consensus        11 ~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks-~vpRC~dfretaevlak~afkmyL   89 (183)
T KOG3330|consen   11 KKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKS-NVPRCVDFRETAEVLAKVAFKMYL   89 (183)
T ss_pred             HHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhc-CCchhhhHHHHHHHHHHhhhheee
Confidence            3457899999999999999999999999999999999999999999999999997 789999999999999999999999


Q ss_pred             cccccccccccCCCCeEEEEeCCcccccccccCC-CCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEE
Q 029156          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPK-DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTI  178 (198)
Q Consensus       100 gk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~-~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f  178 (198)
                      |.++..- .|+.+.++|.|+=.++|+..||+.|+ ..+.|+|++++||+|||||+++.++|+|+  |..|-++++..|.+
T Consensus        90 gitpsit-swss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~--f~~d~lrGd~~tEI  166 (183)
T KOG3330|consen   90 GITPSIT-SWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVV--FLSDTLRGDSVTEI  166 (183)
T ss_pred             eccccee-eecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheee--eeeehhcCCCceee
Confidence            9988766 37888899998766666689996665 45679999999999999999999999998  89999999999999


Q ss_pred             EEEechHHHh
Q 029156          179 LIKFAEEVLT  188 (198)
Q Consensus       179 ~Ik~~~~v~~  188 (198)
                      +|+|.+.+-+
T Consensus       167 rv~f~r~lkd  176 (183)
T KOG3330|consen  167 RVRFLRILKD  176 (183)
T ss_pred             eeeHHHHHhh
Confidence            9999987754

>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]

Probab=95.29  E-value=0.53  Score=38.03  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCccccccc
Q 029156           50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFI  129 (198)
Q Consensus        50 e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~v  129 (198)
                      .....+.++|+.+|..++.           .....++..|+..  |....+.-.+.-   .+...+..+.|..+.    -
T Consensus        46 ~~~~~~y~~G~~~G~~l~~-----------~~~~~~~~~f~~~--~~~~~~~v~~~~---~~~~~~v~v~~c~~c----~  105 (158)
T COG1719          46 GAEPVLYEAGKEIGKALIK-----------EKLIEELENFLEF--WEEVGGGVLEVE---EEEPLVVEVYDCIEC----A  105 (158)
T ss_pred             CcHHHHHHHHHHHHHHhcc-----------hhchHHHHHHHHH--HHhhcceEEEcc---cCCCceEEEEcCchh----h
Confidence            4567788899999999886           1122334444433  888777655433   222455555555543    1


Q ss_pred             ccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029156          130 SIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE  184 (198)
Q Consensus       130 s~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~  184 (198)
                      -+|.  .+-+-+.|.+|+|.|+|+...=+-. .++=+.....+.+.|.|.|+...
T Consensus       106 ~~p~--~~ePvC~~~aG~iag~l~~~~~k~~-~v~Et~C~~~G~~~C~F~i~~~~  157 (158)
T COG1719         106 GLPG--IGEPVCHLEAGFIAGFLEEILGKKV-EVEETECAAEGDDRCVFEIRLKD  157 (158)
T ss_pred             cCCC--CCCcchhHHhhHHHHHHHHHhCCCe-EEEEEEEeecCCCceEEEEEecC
Confidence            2444  2346788999999999998743322 22233344557889999998753

>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase

Probab=89.18  E-value=2.2  Score=35.74  Aligned_cols=132  Identities=14%  Similarity=0.094  Sum_probs=72.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHH-HHHhhhhcCCCCCccchHHHH-------HHHHHHH
Q 029156           23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV-LELLCHRDKGNRRETRLLGIL-------SFVHSTV   94 (198)
Q Consensus        23 ~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rL-iE~l~~r~k~~~r~~~~ld~l-------kfI~k~~   94 (198)
                      .=|+++.|.-|+..+=..+     ..+....-|.+.|.+.|.++ ..++-.   ...+..+.++..       .-|.|++
T Consensus        42 ~mv~E~~~~aL~~aL~~el-----G~~aa~~vl~~~G~~ta~y~l~~rIp~---~~q~~Lr~lp~~~~~r~l~~aI~k~a  113 (188)
T TIGR02019        42 GMLPESQFSTLHRWLRDTL-----GETAAARLLRESGLATADYILANRIPP---PAQRLIRALPAGLAARVLLTAIAKHA  113 (188)
T ss_pred             hcCCHHHHHHHHHHHHHHh-----CHHHHHHHHHHHhHHHHHHHHHHHhhH---HHHHHHHHCChHHHHHHHHHHHHHHH
Confidence            4477777777766553221     22345566777787777777 444331   112333444433       3458899


Q ss_pred             HHHhhcccccccccccCCCCeEEEEeCCccccccc------ccCCCCCCccchhhhHHHHHHHhhhC-CCCeEEEEEEcc
Q 029156           95 WKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFI------SIPKDMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFVP  167 (198)
Q Consensus        95 Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~v------s~p~~~~~l~y~af~~GiIrGaL~~l-g~~~~Vta~~~~  167 (198)
                      |+.-             .-|.|-.....|+..+--      ..|.   +..-++|-+|+++|.++.+ +=++.|.  =+.
T Consensus       114 Wtf~-------------G~G~fs~~~~~~l~i~I~ds~~a~~~~~---~~P~C~~~aGife~lFs~lv~~~~~v~--Et~  175 (188)
T TIGR02019       114 WTFA-------------GSGKFRYVSGPPLSFEIARNPVVAGESS---DTPVCHWYAAVFERLLRRLVWPHVAVR--ETA  175 (188)
T ss_pred             Hhhc-------------ccceEEEeeCCCeEEEEecChhhhcCCC---CCceeeeeHHHHHHHHHHHhCCCceEE--eeh
Confidence            9432             123333333333321100      1111   3345779999999999876 6666654  233


Q ss_pred             CCCCCCCceEEEE
Q 029156          168 VEGQQRPRTTILI  180 (198)
Q Consensus       168 ~~~~~~p~~~f~I  180 (198)
                      ..-.+.+.|.|.|
T Consensus       176 C~a~G~~~C~F~~  188 (188)
T TIGR02019       176 CCAKGAPRCRFEL  188 (188)
T ss_pred             HhhcCCCcceeeC
Confidence            4445778999864

This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2j3w_B	188	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		1e-43
2j3r_B	157	The Crystal Structure Of The Bet3-Trs31 Heterodimer		4e-41
3cue_B	283	Crystal Structure Of A Trapp Subassembly Activating		8e-19
2cfh_C	158	Structure Of The Bet3-Tpc6b Core Of Trapp Length =		4e-04
3kxc_C	158	Mutant Transport Protein Length = 158		4e-04
2bjn_A	160	X-Ray Structure Of Human Tpc6 Length = 160		4e-04

>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 188

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 7/177 (3%)
Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L
Sbjct: 10  SAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVL 69
Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS
Sbjct: 70  VMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYIS 129
Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           +PK+  T NC AF  GIV  +L  +GFPA VT H+          TT++IKF E V+
Sbjct: 130 VPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDESVI 179

>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer Length = 157

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 109/163 (66%), Gaps = 7/163 (4%)
Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L  R+K  +RET
Sbjct: 2   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 61
Query: 82  RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCG 141
           ++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS+PK+  T NC 
Sbjct: 62  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 121
Query: 142 AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
           AF  GIV  +L  +GFPA VT H+          TT++IKF E
Sbjct: 122 AFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDE 157

>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 283

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 75  KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
           K  RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +F  IP +
Sbjct: 168 KMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQF--IPGE 225
Query: 135 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
               +C  FV GI++G L +AGFP  VTAH +P +G    RT  LI+F  +VL
Sbjct: 226 --NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMP-QGGHSQRTVYLIQFDRQVL 275

>pdb|2CFH|C Chain C, Structure Of The Bet3-Tpc6b Core Of Trapp Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54  RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
           +LE+ G+ VG  ++E      K   R    L I+ F+    W  +F K  D+L   T H+
Sbjct: 35  KLENMGFRVGQGLIERFT---KDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 89
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
             Y++ + +  +   +S  K          AF  G++RG L + G  ++VTA
Sbjct: 90  GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141

>pdb|3KXC|C Chain C, Mutant Transport Protein Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54  RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
           +LE+ G+ VG  ++E      K   R    L I+ F+    W  +F K  D+L   T H+
Sbjct: 35  KLENMGFRVGQGLIERF---TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 89
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
             Y++ + +  +   +S  K          AF  G++RG L + G  ++VTA
Sbjct: 90  GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141

>pdb|2BJN|A Chain A, X-Ray Structure Of Human Tpc6 Length = 160

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 30  FAFLFSELVQ-----YNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLL 84
           F  L +E+V        Q +V+N      +LE+ G+ VG  ++E      K   R    L
Sbjct: 9   FLLLHNEMVSGVYKSAEQGEVEN-GRCITKLENMGFRVGQGLIERF---TKDTARFKDEL 64
Query: 85  GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCG--A 142
            I+ F+    W  +F K  D+L   T H+  Y++ + +  +   +S  K          A
Sbjct: 65  DIMKFICKDFWTTVFKKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLA 122
Query: 143 FVAGIVRGVLDSAGFPAVVTA 163
           F  G++RG L + G  ++VTA
Sbjct: 123 FTCGLIRGGLSNLGIKSIVTA 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	3e-75
1sz7_A	200	BET3 homolog, trafficking protein particle complex	3e-57
2bjn_A	160	TPC6, trafficking protein particle complex subunit	1e-53
3cue_B	283	Transport protein particle 31 kDa subunit; membran	1e-50
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	1e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score =  223 bits (570), Expect = 3e-75
 Identities = 86/186 (46%), Positives = 122/186 (65%), Gaps = 7/186 (3%)

Query: 2   IGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYA 61
           + V   +  S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  
Sbjct: 1   MEVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQG 60

Query: 62  VGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEK 121
           VGA +L++L  R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EK
Sbjct: 61  VGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEK 120

Query: 122 ELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK 181
           E L+N +IS+PK+  T NC AF  GIV  +L  +GFPA VT H+          TT++IK
Sbjct: 121 EPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH-------KGTTLMIK 173

Query: 182 FAEEVL 187
           F E V+
Sbjct: 174 FDESVI 179

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score =  178 bits (452), Expect = 3e-57
 Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 6/180 (3%)

Query: 9   QYSNVLDKPLSKGKQE--VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV 66
            + +   +  ++G +   +S   F   +  LV       +N  ++ ++L+  G+ +G R+
Sbjct: 5   HHHHGSSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRL 64

Query: 67  LELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVN 126
           +E    R     R          +    +K+  G            ++  +I E   LV+
Sbjct: 65  IEDFLARSNV-GRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVD 123

Query: 127 RFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV 186
            F+ +P +  +      + G++RG L+       V A FV    +    T I ++F   +
Sbjct: 124 -FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIRMRFIRRI 180

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score =  167 bits (425), Expect = 1e-53
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 16/167 (9%)

Query: 24  EVSLSAFAFLFSELVQYNQTQVDNI----AELERRLEDAGYAVGARVLELLCHRDKGNRR 79
               + F  L +E+V       +           +LE+ G+ VG  ++E      K   R
Sbjct: 3   MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT---KDTAR 59

Query: 80  ETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 139
               L I+ F+    W  +F K  D+L   T H+  Y++ + +  +   +S  K      
Sbjct: 60  FKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHA 117

Query: 140 CG--AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
               AF  G++RG L + G  ++VTA    +     P     +   +
Sbjct: 118 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM-----PACKFQVMIQK 159

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283

 Score =  163 bits (414), Expect = 1e-50
 Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 5/172 (2%)

Query: 16  KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK 75
            P S  +    LS            N   +   +               +   L  +  K
Sbjct: 109 SPSSLPRASAFLSQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITK 168

Query: 76  GNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDM 135
             RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +FI      
Sbjct: 169 MRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGE--- 225

Query: 136 GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
              +C  FV GI++G L +AGFP  VTAH +P  G    RT  LI+F  +VL
Sbjct: 226 -NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQVL 275

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160

 Score =  155 bits (392), Expect = 1e-48
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 17/168 (10%)

Query: 24  EVSLSAFAFLFSELVQYNQTQVDNIAELER-----RLEDAGYAVGARVLELLCHRDKGNR 78
                 F FL +E+V        +     +      LE  G+ VG  + E L        
Sbjct: 2   MADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLPRE---TL 58

Query: 79  RETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDM--G 136
                L +L F+   +W  +F K  DSL   T H+  Y++ +    +   ++        
Sbjct: 59  AFREELDVLKFLCKDLWVAVFQKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEE 116

Query: 137 TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
                AF  G++RG L + G  +VVTA          P     +   +
Sbjct: 117 APKFLAFTCGLLRGALYTLGIESVVTASV-----AALPVCKFQVVIPK 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 43/168 (25%)

Query: 1   MIGVGK-------IKQYSNVLDKP-----LSKGKQ---EVSLSAFAFLFSELVQYNQTQV 45
           ++G GK          Y            L+       E  L     L  ++     ++ 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 46  DNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFV-HSTVW-------KV 97
           D+ + ++ R+      + A +  LL  +   N     LL +L  V ++  W       K+
Sbjct: 218 DHSSNIKLRIHS----IQAELRRLLKSKPYEN----CLL-VLLNVQNAKAWNAFNLSCKI 268

Query: 98  LF----GKVADSLEKGT-------EHEDEYMISEKELLVNRFISIPKD 134
           L      +V D L   T        H       E + L+ +++     
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 51  LERRLEDAGYAVGAR--VLELLCH--------RDKGNRRETRLLGILSFVHSTVWKVLFG 100
           LE+++     A  A   +L  L           D   + E  +  IL F+      ++  
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 101 KVADSLEKGTEHEDEYMISEKELLVNR 127
           K  D L      EDE +  E    V R
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
3cue_D	193	Transport protein particle 22 kDa subunit; membran	100.0
2oso_A	163	Hypothetical protein MJ1460; structural genomics,	96.25
3tfg_A	189	ALR2278 protein; heme-based sensor domain, GAS bin	84.6
2kii_A	181	Putative uncharacterized protein; H-NOX, unknown f	83.45

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=2.1e-64  Score=416.79  Aligned_cols=185  Identities=46%  Similarity=0.775  Sum_probs=159.9

Q ss_pred             ccCCCCCCCccccccCccCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccc
Q 029156            3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR   82 (198)
Q Consensus         3 ~~~~~~~~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~   82 (198)
                      +++.+++..+|+||||+|++++||+|+|+|||+|||+|++++.++.+|++++|++|||+||.||+|++++|++..+||++
T Consensus         2 ~~~~~~~~~~i~~~~l~~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d   81 (188)
T 2j3w_B            2 EVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETK   81 (188)
T ss_dssp             -------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCS
T ss_pred             CcccCCCCCccccCccccchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCC
Confidence            56778888999999999999999999999999999999999999999999999999999999999999999876699999


Q ss_pred             hHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEE
Q 029156           83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVT  162 (198)
Q Consensus        83 ~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vt  162 (198)
                      ++|+++||||++|+++||||+|+|++.|||+|+|+|+|++|++++|||+|+++++++|++|+||||||||+++||+|+||
T Consensus        82 ~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vt  161 (188)
T 2j3w_B           82 VLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVT  161 (188)
T ss_dssp             HHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEE
Confidence            99999999999999999999999975599999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCceEEEEEechHHHhhhhhhh
Q 029156          163 AHFVPVEGQQRPRTTILIKFAEEVLTSFSLIV  194 (198)
Q Consensus       163 a~~~~~~~~~~p~~~f~Ik~~~~v~~re~~~~  194 (198)
                      ||+       +|+|+|+|||+++|++||+++.
T Consensus       162 a~~-------~~~t~f~Ikf~~~v~~re~~~~  186 (188)
T 2j3w_B          162 VHW-------HKGTTLMIKFDESVIARDKALD  186 (188)
T ss_dssp             EEE-------SSSEEEEEEECHHHHHHHHHTC
T ss_pred             EEe-------CCCEEEEEEecHHHHHHHHhhc
Confidence            999       3699999999999999999873

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-56  Score=387.93  Aligned_cols=180  Identities=39%  Similarity=0.647  Sum_probs=151.2

Q ss_pred             CCccccccCccCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcC--------------
Q 029156           10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK--------------   75 (198)
Q Consensus        10 ~~~i~~~~~~~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k--------------   75 (198)
                      +.+||||+|.+.+.+||+|+|+|||+|||+|+++++++.+|++++|+.|||+||.||+|++.+|++              
T Consensus        42 ~~~i~~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~  121 (283)
T 3cue_B           42 PSRIYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS  121 (283)
T ss_dssp             -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred             CCcccccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence            579999999999999999999999999999999999999999999999999999999999999864              


Q ss_pred             -----------------------------------------------CCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 029156           76 -----------------------------------------------GNRRETRLLGILSFVHSTVWKVLFGKVADSLEK  108 (198)
Q Consensus        76 -----------------------------------------------~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~  108 (198)
                                                                     +++||.+++|+++||||++|+++||||+|+||+
T Consensus       122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek  201 (283)
T 3cue_B          122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK  201 (283)
T ss_dssp             -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence                                                           258999999999999999999999999999985


Q ss_pred             ccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHHHh
Q 029156          109 GTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLT  188 (198)
Q Consensus       109 ~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v~~  188 (198)
                      .+++.|+|+|+|+++++.+|++++    +++|++|+||||||||+++||+|+||||+.+... ..++|+|+|||+++|++
T Consensus       202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~-~~~~T~~~IkF~~~v~~  276 (283)
T 3cue_B          202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQVLD  276 (283)
T ss_dssp             CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSS-CTTCEEEECCCCHHHHH
T ss_pred             ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEccccc-CCCceEEEEEecHHHHh
Confidence            555669999999999999999973    5899999999999999999999999999876432 34699999999999999


Q ss_pred             hhhhhh
Q 029156          189 SFSLIV  194 (198)
Q Consensus       189 re~~~~  194 (198)
                      ||++++
T Consensus       277 Re~~r~  282 (283)
T 3cue_B          277 REGLRF  282 (283)
T ss_dssp             HHHHCC
T ss_pred             hhhhhc
Confidence            999876

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=6.2e-54  Score=346.32  Aligned_cols=150  Identities=25%  Similarity=0.329  Sum_probs=133.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156           25 VSLSAFAFLFSELVQYNQTQVDN-----IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (198)
Q Consensus        25 Vs~s~f~~L~~EiV~y~~~~~~~-----~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF   99 (198)
                      ||+|+|+|||+|||+|++++.++     .++++++|++|||+||.||+|+++ |  +.+||++++|+++||||++|+++|
T Consensus         3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r--~~~r~~d~ld~l~fI~k~~Wk~~f   79 (160)
T 2c0j_B            3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R--ETLAFREELDVLKFLCKDLWVAVF   79 (160)
T ss_dssp             CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G--GGGTTCCHHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence            79999999999999999998774     457799999999999999999999 5  579999999999999999999999


Q ss_pred             cccccccccccCCCCeEEEEeCCcccccccccCCCCC--CccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029156          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (198)
Q Consensus       100 gk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~--~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~  177 (198)
                      |||+|+|  +|||+|+|+|+|++|+|++|+|+|+++.  .++|++|+||||||||+++||+|+||||++     +.|+|+
T Consensus        80 gk~~d~L--~t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~-----~~p~~~  152 (160)
T 2c0j_B           80 QKQMDSL--RTNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVA-----ALPVCK  152 (160)
T ss_dssp             SSCCSEE--EECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEES-----STTCEE
T ss_pred             CCcCccc--eeCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeec-----CCCceE
Confidence            9999999  6999999999999999999999999988  789999999999999999999999999997     578999


Q ss_pred             EEEEech
Q 029156          178 ILIKFAE  184 (198)
Q Consensus       178 f~Ik~~~  184 (198)
                      |+|||.+
T Consensus       153 f~i~~~~  159 (160)
T 2c0j_B          153 FQVVIPK  159 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEEeec
Confidence            9999976

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=100.00  E-value=1.2e-53  Score=355.28  Aligned_cols=163  Identities=20%  Similarity=0.373  Sum_probs=151.4

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhc
Q 029156           21 GKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFG  100 (198)
Q Consensus        21 ~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFg  100 (198)
                      ...+||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|+ ..+||++++|+++||||++||++||
T Consensus        19 ~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~d~le~l~fI~k~~Wk~lFg   97 (200)
T 1sz7_A           19 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLG   97 (200)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCSCCCHHHHHHHHHHTHHHHHHS
T ss_pred             ccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhC
Confidence            458999999999999999999999999999999999999999999999999997 5799999999999999999999999


Q ss_pred             ccccccccccCCCCeEEE-EeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEE
Q 029156          101 KVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTIL  179 (198)
Q Consensus       101 k~~D~Le~~tn~~~~Y~l-~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~  179 (198)
                      ||+|+|+ +||++|+|+| .|++|+.. |+++|++++.++|++|+||||||||+++||+  ||||+++++++++++|+|+
T Consensus        98 k~ad~L~-~t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vta~~~~d~l~g~~~t~~~  173 (200)
T 1sz7_A           98 ITPSITN-WSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIR  173 (200)
T ss_dssp             CCCEEEC-CCTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EEEEEEECGGGTCSSEEEE
T ss_pred             CCCccce-ecCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EEEEEEecccCCCCCEEEE
Confidence            9999995 5999999999 79988755 9999999999999999999999999999999  8899999999888999999


Q ss_pred             EEechHHHh
Q 029156          180 IKFAEEVLT  188 (198)
Q Consensus       180 Ik~~~~v~~  188 (198)
                      |||.++|.+
T Consensus       174 Ikf~~~v~~  182 (200)
T 1sz7_A          174 MRFIRRIED  182 (200)
T ss_dssp             EEEEEEC--
T ss_pred             EEEhhhhhh
Confidence            999998865

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=1.4e-52  Score=338.35  Aligned_cols=151  Identities=23%  Similarity=0.389  Sum_probs=128.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhcCChH----HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156           24 EVSLSAFAFLFSELVQYNQTQVDNIA----ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (198)
Q Consensus        24 ~Vs~s~f~~L~~EiV~y~~~~~~~~~----e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF   99 (198)
                      -||.++|+|||+|||+|++++.++.+    +++++|++|||+||.||+|+++ |  +.+||++++|+++||||++|+++|
T Consensus         3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r--~~~r~~~~ld~lkfI~k~~Wk~~f   79 (160)
T 2bjn_A            3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-K--DTARFKDELDIMKFICKDFWTTVF   79 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999987654    6899999999999999999999 5  479999999999999999999999


Q ss_pred             cccccccccccCCCCeEEEEeCCcccccccccCCCCC--CccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029156          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (198)
Q Consensus       100 gk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~--~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~  177 (198)
                      |||+|+|  +|||+|+|+|+|++|+|++|+|+|+++.  .++|++|+||||||||+++||+|+||||+.     +.|+|+
T Consensus        80 gk~~d~L--~t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~-----~~p~~~  152 (160)
T 2bjn_A           80 KKQIDNL--RTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVS-----SMPACK  152 (160)
T ss_dssp             SSCCSEE--EEEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEES-----STTCEE
T ss_pred             CCCCccc--ccCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEec-----CCCceE
Confidence            9999999  6999999999999999999999999884  689999999999999999999999999996     578999


Q ss_pred             EEEEech
Q 029156          178 ILIKFAE  184 (198)
Q Consensus       178 f~Ik~~~  184 (198)
                      |+|++.+
T Consensus       153 F~i~~~~  159 (160)
T 2bjn_A          153 FQVMIQK  159 (160)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9999976

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-52  Score=345.48  Aligned_cols=163  Identities=16%  Similarity=0.327  Sum_probs=150.6

Q ss_pred             CccchhHHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156           21 GKQEVSLSAFAFLFSELVQ-YNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (198)
Q Consensus        21 ~~~~Vs~s~f~~L~~EiV~-y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF   99 (198)
                      ...+||+|+|+|||+|||+ |+++..++.++++++|++|||+||.||+|++++|+ +.+||.+++|+++||||++||++|
T Consensus        21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~~~le~l~fI~k~~Wk~lf   99 (193)
T 3cue_D           21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLART-ALPRCENLVKTSEVLSKCAFKIFL   99 (193)
T ss_dssp             SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred             chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999 55555566899999999999999999999999997 589999999999999999999999


Q ss_pred             cccccccccccCCCCeEEE-EeCCcccccccccCCCC-CCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 029156          100 GKVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDM-GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (198)
Q Consensus       100 gk~~D~Le~~tn~~~~Y~l-~D~~~~~~~~vs~p~~~-~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~  177 (198)
                      |||+|+|+ +|||+|+|+| .|++|+.. |+++|+++ ..++|++|+||||||||+++||  .||||+++|+++++++|+
T Consensus       100 gk~~d~L~-~t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~Vta~~~~d~l~g~~~t~  175 (193)
T 3cue_D          100 NITPNITN-WSHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DCDVWFVSDILRGDSQTE  175 (193)
T ss_dssp             SCCCCCBC-CCTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CCEEEECCCSSSSSSCBC
T ss_pred             CCCCccce-ecCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EEEEEEeeccCCCCCCEE
Confidence            99999996 5999999999 89998755 99999998 7899999999999999999999  788889999999899999


Q ss_pred             EEEEechHHHh
Q 029156          178 ILIKFAEEVLT  188 (198)
Q Consensus       178 f~Ik~~~~v~~  188 (198)
                      |+|||.++|.+
T Consensus       176 ~~Ikf~~~v~d  186 (193)
T 3cue_D          176 IKVKLNRILKD  186 (193)
T ss_dssp             EEEECCCCCSC
T ss_pred             EEEEEhhhhhc
Confidence            99999998865

>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*

Probab=96.25  E-value=0.0055  Score=48.52  Aligned_cols=133  Identities=17%  Similarity=0.196  Sum_probs=78.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH-hhc
Q 029156           22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV-LFG  100 (198)
Q Consensus        22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~-lFg  100 (198)
                      ...|+.+.|.+|+..+-..+.....+..     |.+.||..|..+.+.+             ++.+    +++|+. =+|
T Consensus        25 ~~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~-------------~~~l----~~~~~~~G~G   82 (163)
T 2oso_A           25 SKKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKN-------------IEEL----KKIFKLMNFG   82 (163)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSS-------------HHHH----HHHHHHHTCC
T ss_pred             cCcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHH-------------HHHH----HHHHHHcCce
Confidence            4789999999999987766544332222     9999999999886542             2222    466765 222


Q ss_pred             c-cccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhC-CCCeEEEEEEccCCCCCCCceEE
Q 029156          101 K-VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVEGQQRPRTTI  178 (198)
Q Consensus       101 k-~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~l-g~~~~Vta~~~~~~~~~~p~~~f  178 (198)
                      . .++..+ ....++.+.|.-.+...-.   .   ..+-.-+.|.+|++.|+++.+ |=+..  +.=+.....+++.|.|
T Consensus        83 ~l~i~~~~-~~~~~~~~~i~v~~s~e~~---~---~~~~pvC~~~~G~~aG~~s~~~g~~~~--~~E~~C~a~G~~~C~F  153 (163)
T 2oso_A           83 DLEIDENK-ILLKNPPYKIKLSNPPYQW---V---SKEEPIHDFIAGILAGCLEEIFYYYFV--VNEVECVSQGKDKCVF  153 (163)
T ss_dssp             EEECCHHH-HHHSCSCEEEEEESCSCTT---C---CCSSCCCHHHHHHHHHHHHHHHCSEEE--EEEEECGGGTCSSEEE
T ss_pred             EEEEEecc-ccccCCcEEEEEEeCceee---c---CCCCceeHHHHHHHHHHHHHHhCCCeE--EEEeEeEcCCCCeEEE
Confidence            2 111110 0013345655433322111   1   123467889999999999886 44433  3344455668899999


Q ss_pred             EEEechH
Q 029156          179 LIKFAEE  185 (198)
Q Consensus       179 ~Ik~~~~  185 (198)
                      .++..+.
T Consensus       154 ~~~~~~~  160 (163)
T 2oso_A          154 EVKEVDE  160 (163)
T ss_dssp             EEEEEC-
T ss_pred             EEEEHHH
Confidence            9998653

>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*

Probab=84.60  E-value=1.4  Score=35.02  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             chhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHH
Q 029156          140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV  186 (198)
Q Consensus       140 y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v  186 (198)
                      ++.+..|+|+|+-+-.|-+.+|+  ..+....+.+.|.|.|++.++-
T Consensus       141 l~~~~~Gli~~~A~~f~~~v~i~--~~~~~~~~~~h~~f~i~~~~~~  185 (189)
T 3tfg_A          141 LAPMVLGLLHGLGKRFQTKVEVT--QTAFRETGEDHDIFSIKYEDSN  185 (189)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEE--EEECTTTTSSSEEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEE--EEeccCCCCCeEEEEEEECCCC
Confidence            67899999999999866555555  5554444566899999998753

>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*

Probab=83.45  E-value=9.4  Score=29.92  Aligned_cols=43  Identities=7%  Similarity=0.084  Sum_probs=33.4

Q ss_pred             chhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEech
Q 029156          140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE  184 (198)
Q Consensus       140 y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~  184 (198)
                      ...|..|+|+|+-+.+|-+.+|+-.  +...++...+.|.|+++.
T Consensus       138 l~~~~~Gli~~~A~~f~~~v~i~~~--~~~~~~~~h~~f~i~~~~  180 (181)
T 2kii_A          138 LCFCAEGLLFGAAQHFQQKIQISHD--TCMHTGADHCMLIIELQN  180 (181)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEEE--ECGGGTCSSEEEEEEECC
T ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEE--eeccCCCCEEEEEEEecC
Confidence            7789999999999999988888732  222234569999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	2e-68
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	7e-48

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  204 bits (520), Expect = 2e-68
 Identities = 82/166 (49%), Positives = 111/166 (66%), Gaps = 7/166 (4%)

Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L  R+K  +RET
Sbjct: 1   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 60

Query: 82  RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCG 141
           ++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS+PK+  T NC 
Sbjct: 61  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 120

Query: 142 AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVL 187
           AF  GIV  +L  +GFPA VT H+          TT++IKF E V+
Sbjct: 121 AFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDESVI 159

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  151 bits (384), Expect = 7e-48
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 4/164 (2%)

Query: 23  QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR 82
           +++S   F   +  LV       +N  ++ ++L+  GY +G R++E    R     R   
Sbjct: 1   KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARS-NVGRCHD 59

Query: 83  LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGA 142
                  +    +K+  G             DE+ +  +   +  F+ +P +        
Sbjct: 60  FRETADVIAKVAFKMYLGITPSITNWSPAG-DEFSLILENNPLVDFVELPDNHSALIYSN 118

Query: 143 FVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV 186
            + G++RG L+       V A FV    +    T I ++F   +
Sbjct: 119 LLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIRMRFIRRI 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	100.0
d2osoa1	152	Hypothetical protein MJ1460 {Methanococcus jannasc	95.64
d1u55a_	188	Methyl-accepting chemotaxis protein {Thermoanaerob	89.47

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.2e-60  Score=386.34  Aligned_cols=166  Identities=49%  Similarity=0.821  Sum_probs=160.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcc
Q 029156           22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGK  101 (198)
Q Consensus        22 ~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk  101 (198)
                      |++||+|+|+|||+|||+|+++++++.+|++++|++|||+||.||+|++++|++..+||++++++++||||++|+++|||
T Consensus         1 k~~Vs~s~f~~L~~ElV~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfgk   80 (168)
T d2j3wb1           1 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGK   80 (168)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSS
T ss_pred             CchhCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcCc
Confidence            57999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             cccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEE
Q 029156          102 VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK  181 (198)
Q Consensus       102 ~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik  181 (198)
                      |+|+|++.++|+|+|+|+|++|+|++|||+|+++++++|++|+||||||||+++||+|+||||+.       |+|+|+||
T Consensus        81 ~~d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~~-------~~~~f~ik  153 (168)
T d2j3wb1          81 EADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH-------KGTTLMIK  153 (168)
T ss_dssp             CCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEES-------SSEEEEEE
T ss_pred             CcccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEeeC-------CCeEEEEE
Confidence            99999766889999999999999999999999999999999999999999999999999999984       58999999


Q ss_pred             echHHHhhhhhhh
Q 029156          182 FAEEVLTSFSLIV  194 (198)
Q Consensus       182 ~~~~v~~re~~~~  194 (198)
                      |+++|++||+++.
T Consensus       154 f~~~v~~Re~~l~  166 (168)
T d2j3wb1         154 FDESVIARDKALD  166 (168)
T ss_dssp             ECHHHHHHHHHTC
T ss_pred             ccHHHHHHHHhhc
Confidence            9999999999874

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-51  Score=328.58  Aligned_cols=159  Identities=16%  Similarity=0.324  Sum_probs=147.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccc
Q 029156           23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKV  102 (198)
Q Consensus        23 ~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~  102 (198)
                      .|||+++|++||+|||+|++++.++.++++++|++|||+||.||+|++++|+ +.+||++++|+++||||++|+++||||
T Consensus         1 ~kv~~elfal~yg~iV~~~~~d~e~~~e~~~~Le~~G~~IG~RLiE~~~~r~-~~~R~~~~l~~l~fI~~~~wk~~fgk~   79 (161)
T d1wc9a_           1 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLGIT   79 (161)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCCSCCCHHHHHHHHHHTHHHHHHSCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhCcchhHHHHHHHHhhc-CCCccccHHHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999999999999999999999999999999997 689999999999999999999999999


Q ss_pred             ccccccccCCCCe-EEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEE
Q 029156          103 ADSLEKGTEHEDE-YMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK  181 (198)
Q Consensus       103 ~D~Le~~tn~~~~-Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik  181 (198)
                      +|+|  ++|++++ |+++++++|+.+|+++|++++.++|++|+||||||||+++||+|+||  +++|.++++|.|.+.||
T Consensus        80 ~d~l--~~~~~~~~~~~i~~~npl~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V~--~~~d~l~gd~~~~i~v~  155 (161)
T d1wc9a_          80 PSIT--NWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAK--FVQDTLKGDGVTEIRMR  155 (161)
T ss_dssp             CEEE--CCCTTSCEEEEEESCCGGGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEEE--EEECGGGTCSSEEEEEE
T ss_pred             cccc--eecCCCCeEEEEecCCCccceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEEE--EEecccCCCCceEEEEE
Confidence            9999  5777765 66766677789999999999999999999999999999999999998  67788899999999999


Q ss_pred             echHH
Q 029156          182 FAEEV  186 (198)
Q Consensus       182 ~~~~v  186 (198)
                      |.+.+
T Consensus       156 ~~~~~  160 (161)
T d1wc9a_         156 FIRRI  160 (161)
T ss_dssp             EEEEC
T ss_pred             Eeeec
Confidence            98754

>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: MJ1460-like
domain: Hypothetical protein MJ1460
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.64  E-value=0.0037  Score=47.12  Aligned_cols=133  Identities=16%  Similarity=0.133  Sum_probs=76.0

Q ss_pred             cCccchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 029156           20 KGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (198)
Q Consensus        20 ~~~~~Vs~s~f~~L~~EiV~y~~~~~~~~~e~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lF   99 (198)
                      +....|+.+.|.++..+|..-+....     ...-|-..||++|.++.++.            ..++.+|..+.-|=.+-
T Consensus        18 ~~~~~ip~~~f~l~~~~l~d~l~~~~-----~~~iLY~aGk~lGr~~~~k~------------~eel~~ff~~~g~G~L~   80 (152)
T d2osoa1          18 KESKKIPMPYFGLFALVIFDKVKELG-----SETSLYEIGEEFGKMLSPKN------------IEELKKIFKLMNFGDLE   80 (152)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHC--C-----CCCCHHHHHHHHHHHHCCSS------------HHHHHHHHHHHTCCEEE
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHcCCceEE
Confidence            34466899999999987765443322     22346667888888776543            34566666665553321


Q ss_pred             cccccccccccCCCCeEEEEeCCcccccccccCCCCCCccchhhhHHHHHHHhhhC-CCCeEEEEEEccCCCCCCCceEE
Q 029156          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVEGQQRPRTTI  178 (198)
Q Consensus       100 gk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs~p~~~~~l~y~af~~GiIrGaL~~l-g~~~~Vta~~~~~~~~~~p~~~f  178 (198)
                      =...+-.    ..++.+.+.-.+++.-...      .+-.-+.|.+|++.|+++.+ |-+..|. + +.....+++.|.|
T Consensus        81 I~~~~~~----~~~~~~~~e~~~~~~~~g~------~~~pvC~~~~G~lag~~~~~~g~~~~v~-E-~~C~a~G~~~C~F  148 (152)
T d2osoa1          81 IDENKIL----LKNPPYKIKLSNPPYQWVS------KEEPIHDFIAGILAGCLEEIFYYYFVVN-E-VECVSQGKDKCVF  148 (152)
T ss_dssp             CCHHHHH----HSCSCEEEEEESCSCTTCC------CSSCCCHHHHHHHHHHHHHHHCSEEEEE-E-EECGGGTCSSEEE
T ss_pred             EEecccc----cccceEEEEEccChhhhCC------CCCCcchhhHHHHHHHHHHHhCCceEEE-E-eehhhCCCCceEE
Confidence            1111111    1234455555554422211      12245678899999999886 4444432 2 2344457889999


Q ss_pred             EEE
Q 029156          179 LIK  181 (198)
Q Consensus       179 ~Ik  181 (198)
                      .|+
T Consensus       149 ~v~  151 (152)
T d2osoa1         149 EVK  151 (152)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            986

>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: H-NOX domain
domain: Methyl-accepting chemotaxis protein
species: Thermoanaerobacter tengcongensis [TaxId: 119072]

Probab=89.47  E-value=0.95  Score=34.30  Aligned_cols=120  Identities=18%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             HHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEeCCcccccccc
Q 029156           51 LERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS  130 (198)
Q Consensus        51 ~~~~Le~mGy~VG~rLiE~l~~r~k~~~r~~~~ld~lkfI~k~~Wk~lFgk~~D~Le~~tn~~~~Y~l~D~~~~~~~~vs  130 (198)
                      ...-|+..|...=.++.+.+...-+ .....++|..|.-|+..+=+.+=+-..-..+        +.=.+.+-..+.+-|
T Consensus        63 ~~~ll~~fG~~~~~~~~~~y~~~~~-g~~~~dFL~~ld~iH~~v~~~yp~~~~P~f~--------~~~~~~~~l~l~Y~S  133 (188)
T d1u55a_          63 VNEIWREVGRQNIKTFSEWFPSYFA-GRRLVNFLMMMDEVHLQLTKMIKGATPPRLI--------AKPVAKDAIEMEYVS  133 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSGGGTT-TCCHHHHHHHHHHHHHHHHTTSTTCCCCBCC--------EEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhc-CCCHHHHHHhhhhHHHHHHHhCCCCCCCeEE--------EEECCCCEEEEEEEe
Confidence            4566777887655566664432222 3456777777777777753322121111111        111112212222333


Q ss_pred             cCCCCCCccchhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEechHH
Q 029156          131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV  186 (198)
Q Consensus       131 ~p~~~~~l~y~af~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~p~~~f~Ik~~~~v  186 (198)
                       ++     ..+.|+.|+|+|+-+-.|-+..|...- .....+.+.|.|+|+|+..+
T Consensus       134 -~R-----~l~~~~~Gli~g~A~~f~~~i~I~~~~-~~~~~~~~~~~~~i~f~n~~  182 (188)
T d1u55a_         134 -KR-----KMYDYFLGLIEGSSKFFKEEISVEEVE-RGEKDGFSRLKVRIKFKNPV  182 (188)
T ss_dssp             -TT-----CCHHHHHHHHHHHHHHHTCCEEEEEEE-EEEETTEEEEEEEEEESSCC
T ss_pred             -CC-----ChHHHHHHHHHHHHHHhCCceEEEEee-ccccCCccEEEEEEEEEchh
Confidence             22     356899999999999999988887422 12233556899999998654