Citrus Sinensis ID: 029242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYYCLAVDK
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHcccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHccccEHEEccccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHccHHHHccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgkvfasnplslnvpdpafeswlrdsgylEILDtatttsanavttastketttaTTITHSLLHYLYTFISLLtvnpfaklttddfsaktpswTREFIGalgsysfpssphtlklRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKfcsdkwnwdrypvIRQVLVRIAQCVFPLYYCLAVDK
Flexible Loop (DISEMBL)
mgkvfasnplslnvpdpAFESWLRDSGYLEILDTatttsanavttastketttaTTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYYCLAVDK
Low Complexity Region (SEG)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDtatttsanavttastketttattitHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYYCLAVDK
Disordered region (IsUnstruct)
*****************AFESWLRDSGYLEILDTA************************SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYYCLAV**
Disordered Region (DISOPRED)
******SNPLSLNVPDPAFESWLRDSGYLE******************************LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYYCLAVD*
Disordered Region (DISEMBL)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYYCLAVDK
Disordered Region (DISPRO)
********PLSLNVPDPAFESWLRDSGYLEILDT*********************TITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYYCLAVDK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYYCLAVDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q8LFP1	241	PRA1 family protein H OS=	yes	no	0.918	0.746	0.567	2e-56

>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1

 Score =  218 bits (555), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 143/194 (73%), Gaps = 14/194 (7%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query: 171 YPVIRQVLVRIAQC 184
           +P +R++ + I QC
Sbjct: 183 HPSMRKLSIGIGQC 196

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
255584403	235	conserved hypothetical protein [Ricinus	0.923	0.770	0.650	3e-63
224128244	232	predicted protein [Populus trichocarpa]	0.928	0.784	0.673	1e-62
224114888	229	predicted protein [Populus trichocarpa]	0.928	0.794	0.663	1e-59
449456631	235	PREDICTED: PRA1 family protein H-like is	0.918	0.765	0.612	4e-58
449507067	235	PREDICTED: PRA1 family protein H-like is	0.923	0.770	0.609	6e-58
225461516	233	PREDICTED: PRA1 family protein H-like [V	0.933	0.785	0.592	3e-57
302142972	231	unnamed protein product [Vitis vinifera]	0.913	0.774	0.6	7e-57
147844569	244	hypothetical protein VITISV_019028 [Viti	0.913	0.733	0.6	3e-56
297799228	241	hypothetical protein ARALYDRAFT_492039 [	0.923	0.751	0.569	2e-55
18417012	241	PRA1-like protein H [Arabidopsis thalian	0.918	0.746	0.567	9e-55

>gi|255584403|ref|XP_002532934.1| conserved hypothetical protein [Ricinus communis] gi|223527298|gb|EEF29450.1| conserved hypothetical protein [Ricinus communis]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/189 (65%), Positives = 145/189 (76%), Gaps = 8/189 (4%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITH---- 59
           VF+SNPLSL+VPDPAFESWLRDSGYLE+LD  ++++A   T  +   + + T        
Sbjct: 2   VFSSNPLSLSVPDPAFESWLRDSGYLELLDHRSSSTAATSTPTTASTSNSTTATAATITG 61

Query: 60  ----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR 115
               SL  +  T ISL T+NP +KLTTDDFS +TPSWTR F G  GSYSFPS+    +LR
Sbjct: 62  GFFISLFSHFITLISLFTLNPLSKLTTDDFSGQTPSWTRVFFGDFGSYSFPSNADQARLR 121

Query: 116 VHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIR 175
           VHENVKRYARNYASLFILFFAC+LYQMPLAL+GLISSLALWD  KFCSD+W W++YPVIR
Sbjct: 122 VHENVKRYARNYASLFILFFACTLYQMPLALIGLISSLALWDVLKFCSDRWGWEQYPVIR 181

Query: 176 QVLVRIAQC 184
           QVL+R AQC
Sbjct: 182 QVLIRTAQC 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128244|ref|XP_002329116.1| predicted protein [Populus trichocarpa] gi|222869785|gb|EEF06916.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 148/187 (79%), Gaps = 5/187 (2%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITH---- 59
           VF+SNPLSL+VPD  F+SWLRDSGYLEILD  +++SA A    ++  T+T TT T     
Sbjct: 2   VFSSNPLSLSVPDTTFDSWLRDSGYLEILDQHSSSSAAAAPATTSTITSTTTTATATGLF 61

Query: 60  -SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            S   ++ T +SL T+NPF+KLTTDDFS +TPSWTR F    GSYSFPS     +LRV+E
Sbjct: 62  ISFFSHILTLLSLFTLNPFSKLTTDDFSGQTPSWTRSFFADCGSYSFPSGSDQARLRVNE 121

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           NVKRYARNYASLFILFFAC+LYQMPLAL+GLISSLALWD FKFCSD+W WDRYPV+RQV+
Sbjct: 122 NVKRYARNYASLFILFFACTLYQMPLALIGLISSLALWDVFKFCSDRWGWDRYPVLRQVM 181

Query: 179 VRIAQCV 185
           VR AQCV
Sbjct: 182 VRTAQCV 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114888|ref|XP_002316885.1| predicted protein [Populus trichocarpa] gi|222859950|gb|EEE97497.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/184 (66%), Positives = 144/184 (78%), Gaps = 2/184 (1%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDT--ATTTSANAVTTASTKETTTATTITHSL 61
           VF+SNPLSL+VPDP F++WLRDSGYLEILD   +   + +  TT++T  TTTAT +  S 
Sbjct: 2   VFSSNPLSLSVPDPTFDTWLRDSGYLEILDQHSSAAAAPSTTTTSTTTTTTTATGLFISF 61

Query: 62  LHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVK 121
             +  T +SL T+NPF+KLTTDDFS  TPSWTR F     SYSFPS     +LRV+ENVK
Sbjct: 62  FSHALTLLSLFTLNPFSKLTTDDFSGPTPSWTRSFFADHRSYSFPSGFGQARLRVNENVK 121

Query: 122 RYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRI 181
           RYARNYA LF+LFF C+LYQMPLAL+G+ISSLALWD FKFCSD+W WDRYPVIRQV+VR 
Sbjct: 122 RYARNYAFLFVLFFVCTLYQMPLALIGMISSLALWDIFKFCSDRWGWDRYPVIRQVMVRA 181

Query: 182 AQCV 185
           AQCV
Sbjct: 182 AQCV 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456631|ref|XP_004146052.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449456633|ref|XP_004146053.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 114/186 (61%), Positives = 133/186 (71%), Gaps = 6/186 (3%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATT------TSANAVTTASTKETTTATTIT 58
           F+SNPLSL+VPD AF+SWLRDSGYLEILD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T+NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           N KRYARNYASLF+LFF C+LYQMPLAL+GLIS LALWD  KFC D+W  D+YPV+ Q L
Sbjct: 123 NAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQCL 182

Query: 179 VRIAQC 184
           VRIAQC
Sbjct: 183 VRIAQC 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507067|ref|XP_004162924.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449507071|ref|XP_004162925.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 114/187 (60%), Positives = 133/187 (71%), Gaps = 6/187 (3%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATT------TSANAVTTASTKETTTATTIT 58
           F+SNPLSL+VPD AF+SWLRDSGYLEILD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T+NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           N KRYARNYASLF+LFF C+LYQMPLAL+GLIS LALWD  KFC D+W  D+YPV+ Q L
Sbjct: 123 NAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQCL 182

Query: 179 VRIAQCV 185
           VRIAQC 
Sbjct: 183 VRIAQCA 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461516|ref|XP_002285129.1| PREDICTED: PRA1 family protein H-like [Vitis vinifera]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 1   MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS 60
           M   F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S
Sbjct: 1   MPMAFSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNS 59

Query: 61  -----LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR 115
                +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LR
Sbjct: 60  FFFVSILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLR 119

Query: 116 VHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIR 175
           VHENVKRYARNYA+LFI+ FAC+LYQMP+ALVGLISSLALWD  +FCSDKW  DRYPV+R
Sbjct: 120 VHENVKRYARNYATLFIICFACTLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVR 179

Query: 176 QVLVRIAQC 184
           Q L+   QC
Sbjct: 180 QALIHTVQC 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142972|emb|CBI20267.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/185 (60%), Positives = 142/185 (76%), Gaps = 6/185 (3%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS---- 60
           F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S    
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNSFFFV 61

Query: 61  -LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHEN 119
            +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LRVHEN
Sbjct: 62  SILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLRVHEN 121

Query: 120 VKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLV 179
           VKRYARNYA+LFI+ FAC+LYQMP+ALVGLISSLALWD  +FCSDKW  DRYPV+RQ L+
Sbjct: 122 VKRYARNYATLFIICFACTLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVRQALI 181

Query: 180 RIAQC 184
              QC
Sbjct: 182 HTVQC 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844569|emb|CAN80067.1| hypothetical protein VITISV_019028 [Vitis vinifera]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/185 (60%), Positives = 140/185 (75%), Gaps = 6/185 (3%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS---- 60
           F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S    
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNSFFFV 61

Query: 61  -LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHEN 119
            +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY FPSS    +LRVHEN
Sbjct: 62  SILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYXFPSSSSQARLRVHEN 121

Query: 120 VKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLV 179
           VKRYARNYA+LFI+ FAC LYQMP+ALVGLISSLALWD  +FCSDKW  DRYPV+RQ L+
Sbjct: 122 VKRYARNYATLFIICFACXLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVRQALI 181

Query: 180 RIAQC 184
              QC
Sbjct: 182 HTVQC 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799228|ref|XP_002867498.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata] gi|297313334|gb|EFH43757.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 144/195 (73%), Gaps = 14/195 (7%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  TP WT  F G   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTPPWTTGFFGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL++SLALW+ FKFCSD+W +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLASLALWELFKFCSDRWKFDR 182

Query: 171 YPVIRQVLVRIAQCV 185
           +P +R+  + I QCV
Sbjct: 183 HPSMRKFSIGIGQCV 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417012|ref|NP_567776.1| PRA1-like protein H [Arabidopsis thaliana] gi|75155917|sp|Q8LFP1.1|PRA1H_ARATH RecName: Full=PRA1 family protein H; Short=AtPRA1.H gi|21536961|gb|AAM61302.1| unknown [Arabidopsis thaliana] gi|92856594|gb|ABE77405.1| At4g27540 [Arabidopsis thaliana] gi|332659955|gb|AEE85355.1| PRA1-like protein H [Arabidopsis thaliana]

 Score =  218 bits (555), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 143/194 (73%), Gaps = 14/194 (7%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query: 171 YPVIRQVLVRIAQC 184
           +P +R++ + I QC
Sbjct: 183 HPSMRKLSIGIGQC 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2137692	241	PRA1.H "AT4G27540" [Arabidopsi	0.918	0.746	0.541	5.6e-52

TAIR|locus:2137692 PRA1.H "AT4G27540" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 105/194 (54%), Positives = 127/194 (65%)

Query:     5 FASNPLSLNVPDPAFESWLRDSGYLEILDXXXXXXXXXXXXXXXXXXXXXXXXXHS---- 60
             F+ NPLSL+VPDPAFESWLRDSGYLE+LD                          S    
Sbjct:     3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query:    61 ----------LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
                       LL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct:    63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query:   111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
               ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct:   123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query:   171 YPVIRQVLVRIAQC 184
             +P +R++ + I QC
Sbjct:   183 HPSMRKLSIGIGQC 196


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.140   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       171   0.00090  108 3  11 22  0.45    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  179 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.65u 0.09s 15.74t   Elapsed:  00:00:08
  Total cpu time:  15.65u 0.09s 15.74t   Elapsed:  00:00:08
  Start:  Fri May 10 12:01:09 2013   End:  Fri May 10 12:01:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LFP1	PRA1H_ARATH	No assigned EC number	0.5670	0.9183	0.7468	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam03208	153	pfam03208, PRA1, PRA1 family protein	0.004

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 94  REFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSL 153
            EF      +S P S      RV  N+  +  NYA + +     SL   PL+L+ L+  +
Sbjct: 13  SEFFD-RSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTNPLSLIVLLVLV 71

Query: 154 ALWDFFKF 161
           A W F  F
Sbjct: 72  AAWLFLYF 79

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	99.91
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	99.82
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	98.33
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	93.11

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-24  Score=183.66  Aligned_cols=83  Identities=27%  Similarity=0.486  Sum_probs=78.0

Q ss_pred             cccccCCCCCCcchhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 029242           81 TTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFK  160 (196)
Q Consensus        81 Tt~dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLy  160 (196)
                      +..+=..+.|||+ ||+|. +++|+|+|++||.+||+.|+.||+.||+++++++.+.+|+|||++||++++.+++|.++|
T Consensus        29 ~~~~~lst~RpW~-ef~d~-~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~LY  106 (187)
T KOG3142|consen   29 TIQSGLSTRRPWS-EFFDR-SAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFLY  106 (187)
T ss_pred             HHHHHHhccCCHH-HHHcc-cccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhee
Confidence            4445567899999 99996 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhcc
Q 029242          161 FCSDK  165 (196)
Q Consensus       161 FlRDe  165 (196)
                      |+|||
T Consensus       107 ~~rd~  111 (187)
T KOG3142|consen  107 FLRDE  111 (187)
T ss_pred             eecCC
Confidence            99964

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=99.82  E-value=4.8e-20  Score=144.75  Aligned_cols=86  Identities=27%  Similarity=0.459  Sum_probs=78.2

Q ss_pred             CCCCCCcchhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc-
Q 029242           86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSD-  164 (196)
Q Consensus        86 ~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLyFlRD-  164 (196)
                      ..+.|||+ ||+|. ++|+.|++.+|+..|+++|+.||+.||.++++++++++++++|+.+++++.+.++|.+++..++ 
T Consensus         5 ~~~~Rpw~-eF~~~-~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~~   82 (153)
T PF03208_consen    5 LSPLRPWR-EFFDT-SRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRKE   82 (153)
T ss_pred             cCCCCCHH-HHhCc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            46899998 99986 9999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             --ccCccchhH
Q 029242          165 --KWNWDRYPV  173 (196)
Q Consensus       165 --ew~l~~~p~  173 (196)
                        .+.+.....
T Consensus        83 ~~~~~~~~~~~   93 (153)
T PF03208_consen   83 NDPIVIGGRKI   93 (153)
T ss_pred             CcchhccCccc
Confidence              555533333

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=98.33  E-value=1.4e-06  Score=72.94  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=59.4

Q ss_pred             hhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 029242           95 EFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCS  163 (196)
Q Consensus        95 eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLyFlR  163 (196)
                      ||++. +-.|.|.+++||.+||-.|+.||..||-.++.++..-.|++.|.-||+.....+.=.-.+-+|
T Consensus        34 eFfni-~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl~  101 (169)
T COG5130          34 EFFNI-GRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKLR  101 (169)
T ss_pred             HHhcc-ccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhcc
Confidence            99997 999999999999999999999999999999999999999999998888776666554444454

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=93.11  E-value=0.53  Score=40.63  Aligned_cols=80  Identities=19%  Similarity=0.298  Sum_probs=55.1

Q ss_pred             CCCCcchhhhccccccCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHH--HHHHH-
Q 029242           88 KTPSWTREFIGALGSYSFPS--SPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPL----ALVGLISSL--ALWDF-  158 (196)
Q Consensus        88 ~~rPWr~eFl~~~~SyS~P~--S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPi----ALI~~la~~--~~W~f-  158 (196)
                      |-|-|- +|+-.+.-|..|.  -++.=-.||-.|+-||+.||...++..+.+.-+-.|.    ++|+....+  .+|.+ 
T Consensus        18 PlRa~d-dF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa~~   96 (188)
T KOG4050|consen   18 PLRALD-DFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWAAS   96 (188)
T ss_pred             cchhHH-HhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677 7764456677775  4677778999999999999999999999888888775    333333333  45654 


Q ss_pred             ----HHHhhcccCc
Q 029242          159 ----FKFCSDKWNW  168 (196)
Q Consensus       159 ----LyFlRDew~l  168 (196)
                          .+.+|.+.++
T Consensus        97 ~~a~~krmr~~hp~  110 (188)
T KOG4050|consen   97 ADANIKRMRTDHPL  110 (188)
T ss_pred             ccHHHHHHhhcCcH
Confidence                4555543333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00