Citrus Sinensis ID: 029249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQPDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQTVQEKLIDSGAETQRDKENTNQVSIYLSTFKRIAKGILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIFR
Secondary Structure (PSIPRED)
cccccHHHHHHHEEEcccccEEEEEEcccHHHHHHcccccEEEEEEcccccccccccccccccccccEEEEEEcccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHcccccccccEEEEcccEEEcccccEEEEEEccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHEEEEEcccccEEEEEEEccHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEEEcccccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHccccccccccEEEEHHHcccccccEEEEEccccccccHHEEEEEccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGNCQAIDAAALVIqhpngrierlywpvtasevmrmnpghyvsliiplpsssvsdedkqpdhqktvrftrvkllrpsdtlslghaYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQTVQEKLIDSgaetqrdkentNQVSIYLSTFKRIAKGILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIFR
Flexible Loop (DISEMBL)
MGNCQAIDAAAlviqhpngrieRLYWPVTASEVMRMNPGHYVSLIIPLPSssvsdedkqpdhqktvrftrvkllrpsdtlslghayrlvtsQEVMKVLRAKKSaktkrlhqesvhenlQTVQEKLIDsgaetqrdkentnqVSIYLSTFKRIAKGILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIFR
Low Complexity Region (SEG)
MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYvsliiplpsssvsDEDKQPDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQTVQEKLIDSGAETQRDKENTNQVSIYLSTFKRIAKGILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIFR
Disordered region (IsUnstruct)
****QAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPL******************RFTRVKLLRPSDTLSLGHAYRLVTSQEVMKV*******************************************QVSIYLSTFKRIAKGILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIF*
Disordered Region (DISOPRED)
***C*AIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIP*********************TRVKLLRPSDTLSLGHAYRLVTSQEV*************************************************************ILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIFR
Disordered Region (DISEMBL)
MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSS***********QKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAK************VHENLQTVQEKLIDSGAETQRDKENTNQVSIYLSTFKRIAKGILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIFR
Disordered Region (DISPRO)
*GNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSS************KTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKR*******************************NQVSIYLSTFKRIAKGILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIFR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQPDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQTVQEKLIDSGAETQRDKENTNQVSIYLSTFKRIAKGILLTQSEFETCTGFLSFISIYPFSHTYISMHLMLVRLKIFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
449478544	169	PREDICTED: uncharacterized LOC101209663	0.683	0.792	0.690	3e-46
224099705	180	predicted protein [Populus trichocarpa]	0.698	0.761	0.689	3e-46
449435384	108	PREDICTED: uncharacterized protein LOC10	0.551	1.0	0.787	4e-44
147866500	222	hypothetical protein VITISV_025958 [Viti	0.698	0.617	0.680	6e-44
225424766	175	PREDICTED: uncharacterized protein LOC10	0.698	0.782	0.680	7e-44
224111302	158	predicted protein [Populus trichocarpa]	0.683	0.848	0.690	2e-43
255581188	187	conserved hypothetical protein [Ricinus	0.770	0.807	0.573	1e-42
356497998	172	PREDICTED: uncharacterized protein LOC10	0.693	0.790	0.624	4e-41
388506026	175	unknown [Lotus japonicus]	0.683	0.765	0.619	4e-39
18406580	173	uncharacterized protein [Arabidopsis tha	0.709	0.803	0.575	2e-38

>gi|449478544|ref|XP_004155347.1| PREDICTED: uncharacterized LOC101209663 [Cucumis sativus]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 112/142 (78%), Gaps = 8/142 (5%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQP 60
           MGNCQA+DAAALVIQHP+GRIERLYWPV ASEVMR NPGHYVSLIIPLP S   D++++P
Sbjct: 1   MGNCQAVDAAALVIQHPSGRIERLYWPVVASEVMRTNPGHYVSLIIPLPQS--EDDNREP 58

Query: 61  DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQT 120
              KTVRFTRVKLLRP+DTL+LGHAYRLVT+QEVMKVLRAKK AK+K+   ES  E  QT
Sbjct: 59  ---KTVRFTRVKLLRPNDTLALGHAYRLVTTQEVMKVLRAKKYAKSKKPLPES-EEKPQT 114

Query: 121 VQEKLIDSGAETQRDKENTNQV 142
           V E+   S  + + D E   Q 
Sbjct: 115 VMEER--SAGDEEEDTEKNQQA 134

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099705|ref|XP_002311585.1| predicted protein [Populus trichocarpa] gi|222851405|gb|EEE88952.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 115/145 (79%), Gaps = 8/145 (5%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQP 60
           MGNCQAIDAAALVIQHP+G+IERLYWPV+ SEVMRMNPGHYVSLIIPLP   VS + +  
Sbjct: 1   MGNCQAIDAAALVIQHPSGKIERLYWPVSVSEVMRMNPGHYVSLIIPLP---VSGDQENQ 57

Query: 61  DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQ-ESVHEN-- 117
           +H KTV+FTRVKLLRPSD+L+LGHAYRLVT+QEVMKV+RAKK AK KR  Q ESV EN  
Sbjct: 58  EHIKTVQFTRVKLLRPSDSLTLGHAYRLVTTQEVMKVIRAKKYAKLKRQQQPESVDENKS 117

Query: 118 -LQTVQEKLIDSGAETQRDKENTNQ 141
            LQ   EK   +  E ++ K NT +
Sbjct: 118 QLQVAPEKKRSTDCEAEK-KPNTEK 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435384|ref|XP_004135475.1| PREDICTED: uncharacterized protein LOC101209663, partial [Cucumis sativus]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 100/113 (88%), Gaps = 5/113 (4%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQP 60
           MGNCQA+DAAALVIQHP+GRIERLYWPV ASEVMR NPGHYVSLIIPLP S   D++++P
Sbjct: 1   MGNCQAVDAAALVIQHPSGRIERLYWPVVASEVMRTNPGHYVSLIIPLPQS--EDDNREP 58

Query: 61  DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQES 113
              KTVRFTRVKLLRP+DTL+LGHAYRLVT+QEVMKVLRAKK AK+K+   ES
Sbjct: 59  ---KTVRFTRVKLLRPNDTLALGHAYRLVTTQEVMKVLRAKKYAKSKKPLPES 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866500|emb|CAN79847.1| hypothetical protein VITISV_025958 [Vitis vinifera]

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 110/144 (76%), Gaps = 7/144 (4%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQP 60
           MGNCQAIDAAALVIQHP GRIERLYW V+A EVMRMNPGHYVSLIIPLP   +  +   P
Sbjct: 1   MGNCQAIDAAALVIQHPCGRIERLYWTVSAGEVMRMNPGHYVSLIIPLP---IPQDHDTP 57

Query: 61  DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQT 120
           D+ KTVRFTRVKLLRP+DTL LGHAYRL+TSQEVMKVLRAKK AK K+   ES  E LQ 
Sbjct: 58  DN-KTVRFTRVKLLRPTDTLVLGHAYRLITSQEVMKVLRAKKYAKMKKNQVESA-EKLQG 115

Query: 121 VQEKLIDSGAE--TQRDKENTNQV 142
           + E+   S  E   + + E +NQV
Sbjct: 116 MAERQSSSCEEDGGRSEMEKSNQV 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424766|ref|XP_002268639.1| PREDICTED: uncharacterized protein LOC100250100 [Vitis vinifera] gi|296086500|emb|CBI32089.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 110/144 (76%), Gaps = 7/144 (4%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQP 60
           MGNCQAIDAAALVIQHP GRIERLYW V+A EVMRMNPGHYVSLIIPLP   +  +   P
Sbjct: 1   MGNCQAIDAAALVIQHPCGRIERLYWTVSAGEVMRMNPGHYVSLIIPLP---IPQDHDTP 57

Query: 61  DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQT 120
           D+ KTVRFTRVKLLRP+DTL LGHAYRL+TSQEVMKVLRAKK AK K+   ES  E LQ 
Sbjct: 58  DN-KTVRFTRVKLLRPTDTLVLGHAYRLITSQEVMKVLRAKKYAKMKKNQVESA-EKLQG 115

Query: 121 VQEKLIDSGAET--QRDKENTNQV 142
           + E+   S  E   + + E +NQV
Sbjct: 116 MAERQSSSCEEDGGRSEMEKSNQV 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111302|ref|XP_002315808.1| predicted protein [Populus trichocarpa] gi|222864848|gb|EEF01979.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 110/142 (77%), Gaps = 8/142 (5%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQP 60
           MGNCQ IDAAALVIQHP+G+IERLY PV+ SEVMRMNPGHYVSLIIPLP   VS + +  
Sbjct: 1   MGNCQTIDAAALVIQHPSGKIERLYCPVSVSEVMRMNPGHYVSLIIPLP---VSGDQENQ 57

Query: 61  DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQ-ESVHEN-- 117
           DH KTV+FTRVKLLRPS+TL+LGHAYRLVT+QEVMKVL+AKK AK K   Q ESV +N  
Sbjct: 58  DHVKTVQFTRVKLLRPSNTLALGHAYRLVTTQEVMKVLQAKKYAKLKGQQQPESVDKNKS 117

Query: 118 -LQTVQEKLIDSGAETQRDKEN 138
            LQ   EK   +  ET R K N
Sbjct: 118 QLQVAPEKKQSTDCET-RKKSN 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581188|ref|XP_002531407.1| conserved hypothetical protein [Ricinus communis] gi|223529000|gb|EEF30991.1| conserved hypothetical protein [Ricinus communis]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 120/176 (68%), Gaps = 25/176 (14%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDED--- 57
           MGNCQAIDAAALVIQHP+G+IERLYWP+ ASEVMRMNPGHYVSLIIPLP   VS ED   
Sbjct: 1   MGNCQAIDAAALVIQHPSGKIERLYWPILASEVMRMNPGHYVSLIIPLP---VSAEDNNN 57

Query: 58  --------KQPDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRL 109
                          TV+FTRVKLLRP+DTL+LGHAYRLVT+QEVMKVLRAKK AK KR 
Sbjct: 58  NNQHNNNTAAAPAATTVQFTRVKLLRPTDTLALGHAYRLVTTQEVMKVLRAKKYAKMKRQ 117

Query: 110 HQESVHENLQTVQ------EKLIDSG--AETQRDKENTNQ---VSIYLSTFKRIAK 154
            Q+   E++   Q      E   ++G   ET++DKE  ++   + I  + F+R  K
Sbjct: 118 QQQQHPESVDKSQILALEKESSCEAGKKTETEKDKEKDHRRLTIVIMFNNFRRQNK 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497998|ref|XP_003517842.1| PREDICTED: uncharacterized protein LOC100777177 [Glycine max]

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 106/141 (75%), Gaps = 5/141 (3%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQP 60
           MGNCQA+D A LVIQHP G+IERLYWPVTASEVMR NPGHYVSLIIPLP        +Q 
Sbjct: 1   MGNCQAVDGAVLVIQHPCGKIERLYWPVTASEVMRTNPGHYVSLIIPLPVPP----QEQN 56

Query: 61  DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQT 120
             +KTVRFTRVKLLRP++TL+LGHAYRL+T+QEVMKVL+AKK AKT++  Q +  E   T
Sbjct: 57  QEKKTVRFTRVKLLRPNETLNLGHAYRLITTQEVMKVLKAKKHAKTRKP-QAAETEKPHT 115

Query: 121 VQEKLIDSGAETQRDKENTNQ 141
           V  +   S +E     ++T+Q
Sbjct: 116 VLPEKQSSASEAHTGGDSTHQ 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506026|gb|AFK41079.1| unknown [Lotus japonicus]

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 117/147 (79%), Gaps = 13/147 (8%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQP 60
           MGNCQA+DAA LVIQHP G+IER+YWP+TASEVM+ NPGHYVSLIIPLP   V++++++ 
Sbjct: 1   MGNCQAVDAAVLVIQHPGGKIERMYWPITASEVMKTNPGHYVSLIIPLP---VTEQEQRN 57

Query: 61  DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQT 120
             QK+VRFTRVKLLRP++TL+LGHAYRL+T+QEVMKVL+AKK+AKTK+   E++ E  QT
Sbjct: 58  QEQKSVRFTRVKLLRPNETLNLGHAYRLITTQEVMKVLKAKKNAKTKKPQAETI-EKPQT 116

Query: 121 VQEKLIDSGAETQRDKE------NTNQ 141
            ++    SG E+Q   +      NTNQ
Sbjct: 117 EKK---SSGCESQTAGDSVSGNTNTNQ 140

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406580|ref|NP_564752.1| uncharacterized protein [Arabidopsis thaliana] gi|4249380|gb|AAD14477.1| ESTs gb|Z37637, gb|AA042498 and gb|AA042269 come from this gene [Arabidopsis thaliana] gi|26450481|dbj|BAC42354.1| unknown protein [Arabidopsis thaliana] gi|28827334|gb|AAO50511.1| unknown protein [Arabidopsis thaliana] gi|332195529|gb|AEE33650.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 109/146 (74%), Gaps = 7/146 (4%)

Query: 1   MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPL-----PSSSVSD 55
           MGNCQA+DAAALV+QHP+G+I+R Y PV+ SE+MRM PGHYVSLIIPL     P+++ + 
Sbjct: 1   MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTTTT 60

Query: 56  EDKQPDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVH 115
           +DK    +K VRFTRVKLLRP++ L LGHAYRL+TSQEVMKVLRAKK AKTK+   E+  
Sbjct: 61  DDKS--ERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKKHQSETSK 118

Query: 116 ENLQTVQEKLIDSGAETQRDKENTNQ 141
           E  +   EK ID  ++  ++ E  ++
Sbjct: 119 EKKKPSSEKKIDEESDKNQNLETKDE 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2202690	173	AT1G60010 "AT1G60010" [Arabido	0.709	0.803	0.520	3.2e-33
TAIR|locus:2194616	166	AT1G10530 "AT1G10530" [Arabido	0.744	0.879	0.460	3.5e-27
TAIR|locus:2170116	159	AT5G50090 "AT5G50090" [Arabido	0.734	0.905	0.448	1.8e-25
TAIR|locus:2170693	161	AT5G62900 "AT5G62900" [Arabido	0.627	0.763	0.471	4.8e-23
TAIR|locus:2158651	182	AT5G67620 "AT5G67620" [Arabido	0.668	0.719	0.368	2.5e-19

TAIR|locus:2202690 AT1G60010 "AT1G60010" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 76/146 (52%), Positives = 97/146 (66%)

Query:     1 MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYXXXXX-----XXXXXXXXD 55
             MGNCQA+DAAALV+QHP+G+I+R Y PV+ SE+MRM PGHY                   
Sbjct:     1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTTTT 60

Query:    56 EDKQPDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVH 115
             +DK    +K VRFTRVKLLRP++ L LGHAYRL+TSQEVMKVLRAKK AKTK+   E+  
Sbjct:    61 DDKS--ERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKKHQSETSK 118

Query:   116 ENLQTVQEKLIDSGAETQRDKENTNQ 141
             E  +   EK ID  ++  ++ E  ++
Sbjct:   119 EKKKPSSEKKIDEESDKNQNLETKDE 144

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2194616 AT1G10530 "AT1G10530" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 70/152 (46%), Positives = 92/152 (60%)

Query:     1 MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYXXXXXXXXXXXXXD---ED 57
             MGNCQA++AA LV+QHP G I+R Y  V+ +EVM M PGHY             +    +
Sbjct:     1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIPLSEEEEKNIPATE 60

Query:    58 KQPD--HQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVH 115
             K  D   +K VRFTRV+LLRP++ L LGHAYRL+TSQEVMKVLR KKSAKTK+ HQ    
Sbjct:    61 KGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMKVLREKKSAKTKK-HQIEKT 119

Query:   116 ENLQTVQEKLIDSGAETQRDKENTNQVSIYLS 147
                +   +K +    + ++ +   N  S+  S
Sbjct:   120 TTAKKFSDKKVPEKKQGKQFRVIRNSTSLLKS 151

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2170116 AT5G50090 "AT5G50090" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 69/154 (44%), Positives = 92/154 (59%)

Query:     1 MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYXXXXXXXXXXXXXDEDKQP 60
             MGNCQA+D A +VIQHPNG+ E+L  PV+AS VM+MNPGH                    
Sbjct:     1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSG--- 57

Query:    61 DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQT 120
              H   +R TR+KLLRP+DTL LGH YRL+T++EVMK L AKK +K K+  + S  + L+ 
Sbjct:    58 -HGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGS-DDKLEM 115

Query:   121 VQEKLIDSGAETQRDKENTNQVSIYLSTFKRIAK 154
             V  K I+S   T+ D E+  Q+        RI++
Sbjct:   116 V--KAINS---TKLDNEDQLQMKKQEKERSRISR 144

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2170693 AT5G62900 "AT5G62900" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 65/138 (47%), Positives = 85/138 (61%)

Query:     1 MGNCQAIDAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYXXXXXXXXXXXXXDEDKQP 60
             MGNCQA +AA  VIQ P+G+  R Y  V ASEV++ +PGH+                  P
Sbjct:     1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSSAV---------P 51

Query:    61 DHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQE-SVHE--- 116
              H  ++R TR+KLLRPSD L LGH YRL++S+EVMK +RAKKS K K++H E SV E   
Sbjct:    52 -HGGSLRVTRIKLLRPSDNLLLGHVYRLISSEEVMKGIRAKKSGKMKKIHGEFSVAEEEI 110

Query:   117 NLQTVQEKLIDSGAETQR 134
             N  T++ +   S  +TQR
Sbjct:   111 NPLTLRSESA-SDKDTQR 127

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2158651 AT5G67620 "AT5G67620" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 52/141 (36%), Positives = 76/141 (53%)

Query:     1 MGNCQAIDAAALVIQHP-NGRIERLYWPVTASEVMRMNPGHYXXXXXXXXXXXXXDEDKQ 59
             MGNCQA +AA ++I HP   ++ER+YW VTAS++M+ NPGHY                  
Sbjct:     1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMK------- 53

Query:    60 PDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKTKRLHQESVHENLQ 119
               ++K +   ++KLLRP DTL +GH YRLV+ +EV+     KK  K  +L +E    +L 
Sbjct:    54 --NEKGLPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKLLKEGGGLDLT 111

Query:   120 TVQEKLIDSGAETQRDKENTN 140
               + K      + +  K N N
Sbjct:   112 KKKTKHRKKKLDQETGKVNPN 132


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       183   0.00076  110 3  11 22  0.40    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.64u 0.16s 18.80t   Elapsed:  00:00:01
  Total cpu time:  18.64u 0.16s 18.80t   Elapsed:  00:00:01
  Start:  Fri May 10 12:09:06 2013   End:  Fri May 10 12:09:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00081370 hypothetical protein (180 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam14009	181	pfam14009, DUF4228, Domain of unknown function (DU	7e-22

>gnl|CDD|222492 pfam14009, DUF4228, Domain of unknown function (DUF4228)

 Score = 87.4 bits (217), Expect = 7e-22
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 23/111 (20%)

Query: 1   MGNCQAI------DAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVS 54
           MGNC +        AA + + HP+G++     PVTA+E+M   PGH+V            
Sbjct: 1   MGNCLSCCLAPSGAAATVKVVHPDGKVREYSRPVTAAELMLEYPGHFVCD---------- 50

Query: 55  DEDKQPDHQKTVRFTRVKLLRPSDTLSLGHAYRLVTSQEVMKVLRAKKSAK 105
                 D     R  R+  L P D L  G  Y L+ ++ +  VL AK  A 
Sbjct: 51  -----SDSLYIGR--RIPALPPDDELERGQLYFLLPAERLQSVLAAKDMAS 94

This domain is found in plants. The function is not known. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF14009	181	DUF4228: Domain of unknown function (DUF4228)	99.97

>PF14009 DUF4228: Domain of unknown function (DUF4228)

Probab=99.97  E-value=1.7e-31  Score=208.35  Aligned_cols=89  Identities=39%  Similarity=0.589  Sum_probs=75.8

Q ss_pred             CCccccc------cccEEEEEcCCCeEEeeecCccHhHHhhcCCCcEEEeeecCCCCCCCCCCCCCCCCccccceeeeec
Q 029249            1 MGNCQAI------DAAALVIQHPNGRIERLYWPVTASEVMRMNPGHYVSLIIPLPSSSVSDEDKQPDHQKTVRFTRVKLL   74 (196)
Q Consensus         1 MGNCqA~------daa~VVIqHP~GrVEr~y~PVSAaEVM~~nPGHyVal~i~~p~s~~~~~~~~~~~~g~vr~tRIklL   74 (196)
                      ||||.++      +..+|+|+|+||+|++|++||+|+|||.+|||||||    .++..             ...+++++|
T Consensus         1 MGn~~~~~~~~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~----~~~~~-------------~~~~~~~~l   63 (181)
T PF14009_consen    1 MGNCVSCCLASSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVC----DSDSF-------------RFGRRIKPL   63 (181)
T ss_pred             CCCcccccccccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEe----ccccc-------------cCCCcccCC
Confidence            9999998      778899999999999999999999999999999998    22111             114799999


Q ss_pred             CCCCccCCCCEEEEEehhHHHHHHHHhhHHHH
Q 029249           75 RPSDTLSLGHAYRLVTSQEVMKVLRAKKSAKT  106 (196)
Q Consensus        75 ~PDdtL~lGqvYrLIP~qeV~k~l~akk~~k~  106 (196)
                      +|||+|++|++|||+|.+.+.+.+.+...++.
T Consensus        64 ~~d~~L~~G~~Y~llP~~~~~~~~~~~~~~~~   95 (181)
T PF14009_consen   64 PPDEELQPGQIYFLLPMSRLQSVLSASDMASL   95 (181)
T ss_pred             CccCeecCCCEEEEEEccccCcccccchhccc
Confidence            99999999999999999998887766554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 39/202 (19%)

Query: 17  PNGRIERLYWPVTASEVMR-MNPGHYVSLI--------IPLPS----SSVSDEDKQPDHQ 63
           P   +  +++ V  S+VM  +N  H  SL+        I +PS      V  E++   H+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 64  KTVRFTRVKLLRPSDTLSLGH---------AYRLVTSQEVMKVLRAKKSAKTKRLHQESV 114
             V    +     SD L   +          + L        +   ++    + +     
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL------KNIEHPERMTLFRMVFL--- 498

Query: 115 HENLQTVQEKLIDSGAETQRDKENTNQVSIYLSTFKRIAKGILLTQSEFETCTG-FLSFI 173
             + + +++K+              N     L   K     I     ++E      L F+
Sbjct: 499 --DFRFLEQKIRHDSTAWNASGSILNT----LQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 174 SIYPFSHTYISMHLMLVRLKIF 195
                 +   S +  L+R+ + 
Sbjct: 553 PKIE-ENLICSKYTDLLRIALM 573

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00