Citrus Sinensis ID: 029266

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
MGNKLAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK
cccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccc
ccccHEEHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHcccccHHHHHcccccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccc
MGNKLAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDftgtsaslgkASLTDLRNGIITAPILFAMEEFPQLRAFinsssdnpanVDVILEYLGKSHGIQRTTELALKHASLAAAAidslpethdvdatnARTALVHITQKIITRNK
MGNKLAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVhitqkiitrnk
MGNKLAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTElalkhaslaaaaIDSLPETHDVDATNARTALVHITQKIITRNK
****LAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKII****
MGNKLAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN*
MGNKLAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK
MGNKLAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGNKLAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query196 2.2.26 [Sep-21-2011]
Q5HZ00422 Solanesyl diphosphate syn no no 1.0 0.464 0.609 3e-73
Q653T6430 Solanesyl-diphosphate syn yes no 1.0 0.455 0.556 2e-66
Q6CBH3452 Probable hexaprenyl pyrop yes no 0.969 0.420 0.375 4e-37
Q33DR2409 Decaprenyl-diphosphate sy yes no 0.964 0.462 0.379 3e-36
Q5T2R2415 Decaprenyl-diphosphate sy yes no 0.969 0.457 0.367 3e-35
Q54VJ9456 Decaprenyl-diphosphate sy yes no 0.954 0.410 0.354 5e-34
Q7S565449 Probable hexaprenyl pyrop N/A no 0.969 0.423 0.360 3e-33
Q76FS5417 Solanesyl diphosphate syn no no 0.877 0.412 0.366 2e-29
P72580323 Prenyl transferase OS=Syn N/A no 0.816 0.495 0.385 7e-29
Q0INZ4372 Probable solanesyl-diphos no no 0.877 0.462 0.336 3e-28
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1 Back     alignment and function desciption
 Score =  274 bits (700), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 166/223 (74%), Gaps = 27/223 (12%)

Query: 1   MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
           MGNK+++LAGD L+SRA  ALA+LK+TEV+                           M+ 
Sbjct: 200 MGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDY 259

Query: 34  YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
           YMQKTY KTA+L+SNSCKAVA L+GQ  EVA LAFEYG+NLGLA+QLIDDILDFTGTSAS
Sbjct: 260 YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 319

Query: 94  LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
           LGK SL+D+R+G+ITAPILFAMEEFPQLR  ++    +P NVD+ LEYLGKS GIQR  E
Sbjct: 320 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 379

Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
           LA++HA+LAAAAI SLPET + D   +R AL+ +T ++ITRNK
Sbjct: 380 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 422
May be involved in the supply of solanesyl diphosphate for ubiquinone-9 biosynthesis in mitochondria. Synthesizes C25 to C45 medium / long-chain products depending on the type of substrate available. Can use geranyl diphosphate, farnesyl diphosphate or geranylgeranyl diphosphate as substrates, but not dimethylallyl diphosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 8EC: 5
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SPS1 PE=1 SV=1 Back     alignment and function description
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1 PE=3 SV=1 Back     alignment and function description
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1 Back     alignment and function description
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1 Back     alignment and function description
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1 Back     alignment and function description
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1 Back     alignment and function description
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=SPS2 PE=1 SV=1 Back     alignment and function description
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=preA PE=3 SV=2 Back     alignment and function description
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment) OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query196
356514290 480 PREDICTED: probable hexaprenyl pyrophosp 1.0 0.408 0.641 7e-76
356563558 419 PREDICTED: probable hexaprenyl pyrophosp 1.0 0.467 0.645 1e-75
11322972 321 geranyl diphosphate synthase [Citrus sin 1.0 0.610 0.636 2e-74
12055493 416 geranyl diphosphat synthase [Quercus rob 1.0 0.471 0.636 4e-74
343466169 423 geranyl diphosphate synthase [Siraitia g 1.0 0.463 0.623 4e-73
27261729 426 geranylgeranyl diphosphate synthase [Cit 1.0 0.460 0.627 5e-73
224108643 383 predicted protein [Populus trichocarpa] 1.0 0.511 0.722 1e-72
350538483 415 geranyl pyrophosphate synthase [Solanum 1.0 0.472 0.609 2e-72
359489044 422 PREDICTED: decaprenyl-diphosphate syntha 1.0 0.464 0.618 3e-72
449433571 423 PREDICTED: solanesyl diphosphate synthas 1.0 0.463 0.623 3e-72
>gi|356514290|ref|XP_003525839.1| PREDICTED: probable hexaprenyl pyrophosphate synthase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 143/223 (64%), Positives = 170/223 (76%), Gaps = 27/223 (12%)

Query: 1   MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
           MGNKLA+LAGD L+SRA VALASLK+TEV+                           ME 
Sbjct: 258 MGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMTTTSDQRCSMEY 317

Query: 34  YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
           YMQKTY KTA+L+SNSCKA+A L+GQ  EVA LAFEYGKNLGLA+QLIDD+LDFTGTSAS
Sbjct: 318 YMQKTYYKTASLISNSCKAIAILAGQTAEVAMLAFEYGKNLGLAFQLIDDVLDFTGTSAS 377

Query: 94  LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
           LGK SL+D+R+GI+TAPILFAMEEFPQLR  ++   +NPANVD+ LEYLGKS GIQRT E
Sbjct: 378 LGKGSLSDIRHGIVTAPILFAMEEFPQLRTIVDEGFENPANVDLALEYLGKSRGIQRTRE 437

Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
           LA++HA+LAAAAIDSLPE+ D D   +R AL+ +T ++ITR K
Sbjct: 438 LAVEHANLAAAAIDSLPESDDEDVRKSRKALIDLTHRVITRTK 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356563558|ref|XP_003550028.1| PREDICTED: probable hexaprenyl pyrophosphate synthase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|11322972|emb|CAC16851.1| geranyl diphosphate synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|12055493|emb|CAC20852.1| geranyl diphosphat synthase [Quercus robur] Back     alignment and taxonomy information
>gi|343466169|gb|AEM42978.1| geranyl diphosphate synthase [Siraitia grosvenorii] Back     alignment and taxonomy information
>gi|27261729|gb|AAN86061.1| geranylgeranyl diphosphate synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|224108643|ref|XP_002314919.1| predicted protein [Populus trichocarpa] gi|222863959|gb|EEF01090.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|350538483|ref|NP_001234089.1| geranyl pyrophosphate synthase [Solanum lycopersicum] gi|82659078|gb|ABB88703.1| geranyl pyrophosphate synthase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|359489044|ref|XP_002268229.2| PREDICTED: decaprenyl-diphosphate synthase subunit 1 [Vitis vinifera] gi|296090181|emb|CBI40000.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433571|ref|XP_004134571.1| PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449490572|ref|XP_004158644.1| PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query196
TAIR|locus:2062315422 GPS1 "geranyl diphosphate synt 0.979 0.454 0.578 4.9e-53
UNIPROTKB|F6RJN8418 PDSS1 "Uncharacterized protein 0.908 0.425 0.364 1.2e-35
MGI|MGI:1889278409 Pdss1 "prenyl (solanesyl) diph 0.903 0.432 0.372 8.1e-35
UNIPROTKB|F1RTW8410 PDSS1 "Uncharacterized protein 0.908 0.434 0.358 2.7e-34
UNIPROTKB|Q5T2R2415 PDSS1 "Decaprenyl-diphosphate 0.908 0.428 0.358 3.4e-34
UNIPROTKB|F1PV51365 PDSS1 "Uncharacterized protein 0.908 0.487 0.358 5.6e-34
ZFIN|ZDB-GENE-030131-4430411 pdss1 "prenyl (decaprenyl) dip 0.908 0.433 0.353 2.4e-33
UNIPROTKB|E1BZW8366 PDSS1 "Uncharacterized protein 0.908 0.486 0.353 4.9e-33
CGD|CAL0005672510 orf19.7478 [Candida albicans ( 0.831 0.319 0.360 1.2e-32
DICTYBASE|DDB_G0280293456 coq1 "trans-prenyltransferase" 0.826 0.355 0.357 2.5e-32
TAIR|locus:2062315 GPS1 "geranyl diphosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 111/192 (57%), Positives = 136/192 (70%)

Query:     5 LAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVA 64
             L   A + L++   + + S       M+ YMQKTY KTA+L+SNSCKAVA L+GQ  EVA
Sbjct:   231 LLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVA 290

Query:    65 TLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAF 124
              LAFEYG+NLGLA+QLIDDILDFTGTSASLGK SL+D+R+G+ITAPILFAMEEFPQLR  
Sbjct:   291 VLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREV 350

Query:   125 INSSSDNPANVDVILEYLGKSHGIQRTTEXXXXXXXXXXXXIDSLPETHDVDATNARTAL 184
             ++    +P NVD+ LEYLGKS GIQR  E            I SLPET + D   +R AL
Sbjct:   351 VDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRAL 410

Query:   185 VHITQKIITRNK 196
             + +T ++ITRNK
Sbjct:   411 IDLTHRVITRNK 422
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0004161 "dimethylallyltranstransferase activity" evidence=IGI;IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0009790 "embryo development" evidence=IMP
GO:0004659 "prenyltransferase activity" evidence=IDA
GO:0006744 "ubiquinone biosynthetic process" evidence=IMP
GO:0050347 "trans-octaprenyltranstransferase activity" evidence=IMP
UNIPROTKB|F6RJN8 PDSS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1889278 Pdss1 "prenyl (solanesyl) diphosphate synthase, subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RTW8 PDSS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T2R2 PDSS1 "Decaprenyl-diphosphate synthase subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PV51 PDSS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4430 pdss1 "prenyl (decaprenyl) diphosphate synthase, subunit 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZW8 PDSS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
CGD|CAL0005672 orf19.7478 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280293 coq1 "trans-prenyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00101320
dimethylallyltranstransferase (383 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0001025501
hypothetical protein (314 aa)
  •  •••0.907
eugene3.00012780
annotation not avaliable (326 aa)
  •  • •0.907
estExt_Genewise1_v1.C_570227
hypothetical protein (366 aa)
  •  •••0.906
grail3.0045022601
hypothetical protein (259 aa)
  •  • •0.905
gw1.VII.3333.1
annotation not avaliable (311 aa)
  •  •••0.905
gw1.II.860.1
hypothetical protein (306 aa)
  •  •••0.905
fgenesh4_pm.C_LG_II001087
hypothetical protein (287 aa)
  •  •••0.905
gw1.IV.3487.1
hypothetical protein (293 aa)
  •  •••0.905
eugene3.00060040
SubName- Full=Putative uncharacterized protein; (342 aa)
     •• 0.902
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
     •• 0.901

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
PLN02890422 PLN02890, PLN02890, geranyl diphosphate synthase 1e-98
TIGR02749322 TIGR02749, prenyl_cyano, solanesyl diphosphate syn 5e-48
PLN02857416 PLN02857, PLN02857, octaprenyl-diphosphate synthas 1e-42
COG0142322 COG0142, IspA, Geranylgeranyl pyrophosphate syntha 4e-41
CHL00151323 CHL00151, preA, prenyl transferase; Reviewed 3e-39
cd00685259 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat 8e-38
cd00867236 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S 2e-27
TIGR02748319 TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn 6e-25
pfam00348260 pfam00348, polyprenyl_synt, Polyprenyl synthetase 6e-23
PRK10888323 PRK10888, PRK10888, octaprenyl diphosphate synthas 6e-17
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 9e-16
PRK10581299 PRK10581, PRK10581, geranyltranstransferase; Provi 2e-06
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase Back     alignment and domain information 
 Score =  291 bits (746), Expect = 1e-98
 Identities = 142/223 (63%), Positives = 171/223 (76%), Gaps = 27/223 (12%)

Query: 1   MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
           MGNKL++LAGD L+SRA VALA+LK+TEV+                           M+ 
Sbjct: 200 MGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVEHLVTGETMQITSSREQRRSMDY 259

Query: 34  YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
           YMQKTY KTA+L+SNSCKAVA L+GQ  EVA LAFEYG+NLGLA+QLIDD+LDFTGTSAS
Sbjct: 260 YMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSAS 319

Query: 94  LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
           LGK SL+D+R+G+ITAPILFAMEEFPQLR  ++   DNPANVD+ LEYLGKS GIQRT E
Sbjct: 320 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRE 379

Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
           LA +HA+LAAAAI+SLPET D D   +R AL+ +T+++ITRNK
Sbjct: 380 LAREHANLAAAAIESLPETDDEDVLTSRRALIDLTERVITRNK 422

Length = 422
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase Back     alignment and domain information
>gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II Back     alignment and domain information
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase Back     alignment and domain information
>gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 196
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 100.0
PLN02890422 geranyl diphosphate synthase 100.0
PLN02857416 octaprenyl-diphosphate synthase 100.0
CHL00151323 preA prenyl transferase; Reviewed 100.0
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 100.0
PRK10888323 octaprenyl diphosphate synthase; Provisional 100.0
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 100.0
KOG0776384 consensus Geranylgeranyl pyrophosphate synthase/Po 100.0
PRK10581299 geranyltranstransferase; Provisional 100.0
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 100.0
PF00348260 polyprenyl_synt: Polyprenyl synthetase; InterPro: 100.0
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 99.94
KOG0777322 consensus Geranylgeranyl pyrophosphate synthase/Po 99.92
KOG0711347 consensus Polyprenyl synthetase [Coenzyme transpor 99.84
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.58
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 95.35
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 94.97
PLN02632334 phytoene synthase 94.54
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 94.31
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 94.28
TIGR01559336 squal_synth farnesyl-diphosphate farnesyltransfera 91.86
PF07307212 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE 90.61
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information 
Probab=100.00  E-value=8.2e-45  Score=306.86  Aligned_cols=190  Identities=42%  Similarity=0.662  Sum_probs=179.6

Q ss_pred             CchhHHHHHhhHHHHHHHHHHHcCCChhhh---------------------------HHHHHHHHhcchHHHHHHHHHHH
Q 029266            1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAV   53 (196)
Q Consensus         1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~g   53 (196)
                      ||+++||++||||++.|++.+++.++++++                           +++|++|+.+|||+||++||++|
T Consensus       106 ~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~g  185 (322)
T TIGR02749       106 FGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAA  185 (322)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHH
Confidence            899999999999999999999887654322                           67899999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCcHHHHHHhcCCCChh
Q 029266           54 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPA  133 (196)
Q Consensus        54 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~  133 (196)
                      ++++|++++.++.+.+||.++|+||||+||++|++++++.+|||.++||++||+|+|++++++..|++.+++.+...+++
T Consensus       186 a~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~  265 (322)
T TIGR02749       186 AVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKG  265 (322)
T ss_pred             HHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988888899988888889


Q ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266          134 NVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK  196 (196)
Q Consensus       134 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~  196 (196)
                      +++++.+++.++|+++++++.++++.++|++.|+.+|+++      .++.|..|++++++|++
T Consensus       266 ~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~  322 (322)
T TIGR02749       266 DLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSP------PREALKELVHFVLSRLY  322 (322)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999987      89999999999999975

Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK10581 geranyltranstransferase; Provisional Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase Back     alignment and domain information
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
3apz_A348 Apo Form Of Arabidopsis MediumLONG-Chain Length Pre 5e-68
3aq0_A348 Ligand-Bound Form Of Arabidopsis MediumLONG-Chain L 6e-68
3aqb_B325 M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphospha 1e-12
3mzv_A341 Crystal Structure Of A Decaprenyl Diphosphate Synth 2e-11
3lmd_A360 Crystal Structure Of Geranylgeranyl Pyrophosphate S 2e-11
1wy0_A342 Crystal Structure Of Geranylgeranyl Pyrophosphate S 2e-10
1vg6_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1vg4_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1v4i_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1vg7_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
2azl_A299 Crystal Structure For The Mutant F117e Of Thermotog 2e-10
1wl1_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1v4h_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1wkz_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1wl2_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1wl0_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1wl3_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1v4e_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1v4j_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1vg2_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1v4k_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 2e-10
1vg3_A299 Crystal Structure Of Octaprenyl Pyrophosphate Synth 3e-10
3tc1_A315 Crystal Structure Of Octaprenyl Pyrophosphate Synth 4e-10
3oyr_A345 Crystal Structure Of Polyprenyl Synthase From Caulo 9e-10
3n3d_A335 Crystal Structure Of Geranylgeranyl Pyrophosphate S 1e-08
3pko_A334 Crystal Structure Of Geranylgeranyl Pyrophosphate S 1e-08
3nf2_A352 Crystal Structure Of Polyprenyl Synthetase From Str 6e-08
3kra_A295 Mint Heterotetrameric Geranyl Pyrophosphate Synthas 1e-07
1rqi_A300 Active Conformation Of Farnesyl Pyrophosphate Synth 2e-06
1rqj_A299 Active Conformation Of Farnesyl Pyrophosphate Synth 2e-06
2h8o_A335 The 1.6a Crystal Structure Of The Geranyltransferas 2e-06
2for_A323 Crystal Structure Of The Shigella Flexneri Farnesyl 2e-06
3ipi_A295 Crystal Structure Of A Geranyltranstransferase From 2e-06
3p8l_A302 Crystal Structure Of Polyprenyl Synthase From Enter 8e-06
4f62_A317 Crystal Structure Of A Putative Farnesyl-Diphosphat 1e-05
3lk5_A380 Crystal Structure Of Putative Geranylgeranyl Pyroph 3e-05
4dhd_A358 Crystal Structure Of Isoprenoid Synthase A3msh1 (Ta 3e-05
3p41_A303 Crystal Structure Of Polyprenyl Synthetase From Pse 8e-05
3lji_A304 Crystal Structure Of Putative Geranyltranstransfera 8e-05
3rmg_A334 Crystal Structure Of Geranylgeranyl Pyrophosphate S 2e-04
3uca_A324 Crystal Structure Of Isoprenoid Synthase (Target Ef 5e-04
3p8r_A302 Crystal Structure Of Polyprenyl Synthase From Vibri 7e-04
3m9u_A309 Crystal Structure Of Geranylgeranyl Pyrophosphate S 7e-04
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase Length = 348 Back     alignment and structure 
Iteration: 1

 Score =  253 bits (646), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 154/223 (69%), Gaps = 27/223 (12%)
Query: 1   MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
           MGNK+++LAGD L+SRA  ALA+LK+TEV+                           M+ 
Sbjct: 126 MGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDY 185
Query: 34  YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
           YMQKTY KTA+L+SNSCKAVA L+GQ  EVA LAFEYG+NLGLA+QLIDDILDFTGTSAS
Sbjct: 186 YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 245
Query: 94  LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
           LGK SL+D+R+G+ITAPILFAMEEFPQLR  ++    +P NVD+ LEYLGKS GIQR  E
Sbjct: 246 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 305
Query: 154 XXXXXXXXXXXXIDSLPETHDVDATNARTALVHITQKIITRNK 196
                       I SLPET + D   +R AL+ +T ++ITRNK
Sbjct: 306 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase (Surface Polar Residue Mutant) Length = 348 Back     alignment and structure
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate Synthase In Complex With Magnesium Length = 325 Back     alignment and structure
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 Back     alignment and structure
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Atcc 13032 Length = 360 Back     alignment and structure
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 Back     alignment and structure
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123A MUTANT Length = 299 Back     alignment and structure
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128A MUTANT Length = 299 Back     alignment and structure
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132a Mutant Length = 299 Back     alignment and structure
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123AD62A MUTANT Length = 299 Back     alignment and structure
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga Maritima Octaprenyl Pyrophosphate Synthase Length = 299 Back     alignment and structure
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima H74a Mutant Length = 299 Back     alignment and structure
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F52a Mutant Length = 299 Back     alignment and structure
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima K41a Mutant Length = 299 Back     alignment and structure
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R90a Mutant Length = 299 Back     alignment and structure
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R44a Mutant Length = 299 Back     alignment and structure
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R91a Mutant Length = 299 Back     alignment and structure
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima Length = 299 Back     alignment and structure
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima V73y Mutant Length = 299 Back     alignment and structure
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76y Mutant Length = 299 Back     alignment and structure
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima S77f Mutant Length = 299 Back     alignment and structure
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76yS77F MUTANT Length = 299 Back     alignment and structure
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori Length = 315 Back     alignment and structure
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 Back     alignment and structure
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 335 Back     alignment and structure
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Complexed With Citrate Length = 334 Back     alignment and structure
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Streptomyces Coelicolor A3(2) Length = 352 Back     alignment and structure
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 295 Back     alignment and structure
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 Back     alignment and structure
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 Back     alignment and structure
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From Agrobacterium Tumefaciens Length = 335 Back     alignment and structure
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 Back     alignment and structure
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The Methanosarcina Mazei Length = 295 Back     alignment and structure
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus Faecalis V583 Length = 302 Back     alignment and structure
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 Back     alignment and structure
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 Back     alignment and structure
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target Efi-501992) From Pyrobaculum Calidifontis Length = 358 Back     alignment and structure
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Pseudomonas Fluorescens Pf-5 Complexed With Magnesium And Isoprenyl Pyrophosphate Length = 303 Back     alignment and structure
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From Pseudomonas Fluorescens Pf-5 Length = 304 Back     alignment and structure
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Bacteroides Thetaiotaomicron Length = 334 Back     alignment and structure
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 Back     alignment and structure
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 Back     alignment and structure
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 309 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 2e-75
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 4e-49
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 7e-47
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 8e-45
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 9e-45
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 7e-44
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 2e-43
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 5e-40
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 3e-38
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 3e-35
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 5e-35
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 2e-34
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 3e-34
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 2e-32
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 5e-28
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 2e-27
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 6e-26
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 2e-25
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 4e-25
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 1e-23
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 3e-21
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 3e-19
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 4e-19
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 8e-18
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 1e-16
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 3e-16
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 6e-16
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 8e-16
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 3e-15
3lsn_A304 Geranyltranstransferase; structural genomics, prot 4e-15
4f62_A317 Geranyltranstransferase; enzyme function initiativ 4e-15
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 6e-15
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 6e-15
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 7e-15
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 7e-15
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 9e-15
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 1e-14
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 6e-14
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 5e-13
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 1e-10
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 2e-10
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 1e-06
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 1e-06
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 Back     alignment and structure
 Score =  229 bits (586), Expect = 2e-75
 Identities = 136/223 (60%), Positives = 166/223 (74%), Gaps = 27/223 (12%)

Query: 1   MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MEC 33
           MGNK+++LAGD L+SRA  ALA+LK+TEV+                           M+ 
Sbjct: 126 MGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDY 185

Query: 34  YMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSAS 93
           YMQKTY KTA+L+SNSCKAVA L+GQ  EVA LAFEYG+NLGLA+QLIDDILDFTGTSAS
Sbjct: 186 YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 245

Query: 94  LGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTE 153
           LGK SL+D+R+G+ITAPILFAMEEFPQLR  ++    +P NVD+ LEYLGKS GIQR  E
Sbjct: 246 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 305

Query: 154 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 196
           LA++HA+LAAAAI SLPET + D   +R AL+ +T ++ITRNK
Sbjct: 306 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Length = 273 Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Length = 274 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query196
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 100.0
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 100.0
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 100.0
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 100.0
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 100.0
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 100.0
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 100.0
3aqb_B325 Component B of hexaprenyl diphosphate synthase; pr 100.0
3tc1_A315 Octaprenyl pyrophosphate synthase; all alpha-helic 100.0
3lk5_A380 Geranylgeranyl pyrophosphate synthase; structural 100.0
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 100.0
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 100.0
2q80_A301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 100.0
2e8v_A340 Geranylgeranyl pyrophosphate synthetase; prenyltra 100.0
1v4e_A299 Octoprenyl-diphosphate synthase; trans-type prenyl 100.0
1yhl_A362 Farnesyl pyrophosphate synthase; farnesyl diphosph 100.0
2qis_A374 Farnesyl pyrophosphate synthetase; trans-prenyltra 100.0
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 100.0
1uby_A367 FPS, farnesyl diphosphate synthase; transferase, i 100.0
4f62_A317 Geranyltranstransferase; enzyme function initiativ 100.0
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 100.0
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
3lsn_A304 Geranyltranstransferase; structural genomics, prot 100.0
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 100.0
3dyh_A390 Farnesyl pyrophosphate synthase; protein-bisphosph 100.0
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 100.0
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 100.0
2her_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
2ihi_A395 Pyrophosphate synthase; PV092040, structural genom 100.0
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 100.0
3mav_A395 Farnesyl pyrophosphate synthase; PV092040, structu 100.0
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 100.0
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 100.0
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 100.0
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 100.0
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 100.0
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 100.0
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 100.0
2q58_A368 Fragment, farnesyl pyrophosphate synthase; farnesy 100.0
2j1p_A293 Geranylgeranyl pyrophosphate synthetase; transfera 99.97
2azj_A289 Geranylgeranyl pyrophosphate synthetase; hexpps, t 99.97
4fp4_A285 Polyprenyl synthetase; isoprenoid synthesis, isopr 99.91
3kra_B274 Geranyl diphosphate synthase small subunit; prenyl 99.87
3qkc_B273 Geranyl diphosphate synthase small subunit; struct 99.86
3vj8_A343 Squalene synthase; farnesyl-diphosphate farnesyltr 93.68
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 93.11
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 92.98
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
Probab=100.00  E-value=4e-45  Score=309.61  Aligned_cols=190  Identities=26%  Similarity=0.451  Sum_probs=167.6

Q ss_pred             CchhHHHHHhhHHHHHHHHHHHcCCChhhh---------------------------HHHHHHHHhcchHHHHHHHHHHH
Q 029266            1 MGNKLAILAGDLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAV   53 (196)
Q Consensus         1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~---------------------------~~~yl~~~~~KTa~L~~~~~~~g   53 (196)
                      ||+++|||+||||+++||+.+++.++++++                           +++|++|+.+|||+||++||++|
T Consensus       112 ~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~g  191 (341)
T 3mzv_A          112 WDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVG  191 (341)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHH
Confidence            899999999999999999999988765432                           68999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc-----HHHHHHhcC
Q 029266           54 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-----QLRAFINSS  128 (196)
Q Consensus        54 a~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~-----~~~~~~~~~  128 (196)
                      ++++|++++..+.+.+||.++|+||||+||++|++++++.+||+.|+||++||+|||++++++..+     .+.+++.++
T Consensus       192 a~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~  271 (341)
T 3mzv_A          192 GIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKG  271 (341)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999864     356777776


Q ss_pred             CCChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHcccC
Q 029266          129 SDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK  196 (196)
Q Consensus       129 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~  196 (196)
                      ..++++++++++++.++|+++++++.++++.++|.+.|+.+|+++      .++.|..|++++++|++
T Consensus       272 ~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~~~~~r~~  333 (341)
T 3mzv_A          272 DQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHP------LRQMLDDLADYVVERVR  333 (341)
T ss_dssp             CCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHTGGGC
T ss_pred             CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccc
Confidence            667888999999999999999999999999999999999999887      99999999999999974
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Back     alignment and structure
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Back     alignment and structure
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Back     alignment and structure
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Back     alignment and structure
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Back     alignment and structure
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Back     alignment and structure
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Back     alignment and structure
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Back     alignment and structure
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* Back     alignment and structure
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Back     alignment and structure
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Back     alignment and structure
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Back     alignment and structure
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Back     alignment and structure
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Back     alignment and structure
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 196
d1v4ea_280 a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th 1e-14
d2q80a1291 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s 4e-11
d1rqja_299 a.128.1.1 (A:) Farnesyl diphosphate synthase (gera 1e-05
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Octoprenyl-diphosphate synthase
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.1 bits (165), Expect = 1e-14
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 25  KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 84
           ++  +  E Y++    K+ AL   + +  A L G+  E     +  G  +G  YQ+ DDI
Sbjct: 142 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDL---YNLGVTIGTIYQMFDDI 198

Query: 85  LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGK 144
           +DF G           DL+NG+ + P++ AME+FP+ R    +      +   ++ ++ +
Sbjct: 199 MDFAGMEKIGKDGF-LDLKNGVASFPLVTAMEKFPEARQMFENR-----DWSGLMSFMRE 252

Query: 145 SHGIQRTTELALKHASLAAAAIDSLPE 171
              ++   E               L +
Sbjct: 253 KGILKECEETLKVLVKNVIIENSWLRD 279
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 Back     information, alignment and structure
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query196
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 100.0
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1v4ea_280 Octoprenyl-diphosphate synthase {Thermotoga mariti 100.0
d1rqja_299 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1rtra_290 Farnesyl diphosphate synthase (geranyltranstransfe 100.0
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 95.96
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Geranylgeranyl pyrophosphate synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-41  Score=277.75  Aligned_cols=169  Identities=20%  Similarity=0.239  Sum_probs=151.5

Q ss_pred             CchhHHHHHhhHHHHHHHHHHHcCCChhhh----------------------------HHHHHHHHhcchHHHHHHHHHH
Q 029266            1 MGNKLAILAGDLLISRALVALASLKHTEVI----------------------------MECYMQKTYNKTAALVSNSCKA   52 (196)
Q Consensus         1 ~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~----------------------------~~~yl~~~~~KTa~L~~~~~~~   52 (196)
                      ||+++||++||||++.|++.+++.++++++                            +++|++|+.+|||+||++||.+
T Consensus        78 ~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~~~s~~~y~~ii~~KT~~Lf~~~~~~  157 (291)
T d2q80a1          78 YGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGL  157 (291)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhHhccccccccccccccCCHHHHHHHHHhccchhhHhhhhh
Confidence            799999999999999999999998765432                            6789999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHchhhccccccccccccCCCcchhhhcccCcHHHHHHhhhCc---HHHHHHhcCC
Q 029266           53 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP---QLRAFINSSS  129 (196)
Q Consensus        53 ga~lag~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~---~~~~~~~~~~  129 (196)
                      |++++|++++    +.+||+++|+||||+||++|+++++..+|||.++||++||+|||++++++..+   ++.+++.+..
T Consensus       158 ga~~~~~~~~----l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~al~~~~~~~~l~~il~~~~  233 (291)
T d2q80a1         158 MQLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT  233 (291)
T ss_dssp             HHHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred             hhhhcccchh----hHHHHHHHHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHHHHHhcccHHHHHHHHhccc
Confidence            9999998753    88999999999999999999999999999999999999999999999998754   6788888888


Q ss_pred             CChhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 029266          130 DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH  173 (196)
Q Consensus       130 ~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~  173 (196)
                      .+++.++++++++.++|++++|++.+++|.++|.+.|+.+|+++
T Consensus       234 ~~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~~l~~~~  277 (291)
T d2q80a1         234 ENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP  277 (291)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             CCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            88899999999999999999999999999999999999999876
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure