Citrus Sinensis ID: 029271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MIHLSVNHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Secondary Structure (PSIPRED)
ccEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHcccEEEEEcccccccccHHHHccccccEEEEcccccccccccEEEccccccccEEEcEEcccccHHHHHHHHHHccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEccHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHccccEEEEEEcccccccHHHHHHHEccccccEEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mihlsvnhqlssrKKTLMVTLQLLRCQIvyvpaacpstksclpRFLLLaadapivgiimesdldlpvmndaartlsdfgvpyeikilpphqncKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVpllsedwseddvinsirmpshvqvasvprnnaknAALYAVKVLGIADEDLLERIRKYVEE
Flexible Loop (DISEMBL)
mihlsvnhqlssrkKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Low Complexity Region (SEG)
MIHLSVNHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Disordered region (IsUnstruct)
**************KTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRK****
Disordered Region (DISOPRED)
MIHLSV*HQLSS*****************************************IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKY***
Disordered Region (DISEMBL)
************RKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Disordered Region (DISPRO)
MIHLSVNHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIHLSVNHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
O58058	177	N5-carboxyaminoimidazole	yes	no	0.760	0.841	0.46	3e-31
Q9UY68	174	N5-carboxyaminoimidazole	yes	no	0.734	0.827	0.455	3e-26
Q92210	568	Phosphoribosylaminoimidaz	N/A	no	0.780	0.269	0.422	5e-26
P55195	557	Phosphoribosylaminoimidaz	N/A	no	0.872	0.307	0.385	9e-26
P21264	571	Phosphoribosylaminoimidaz	yes	no	0.724	0.248	0.454	1e-25
Q9WYS7	171	N5-carboxyaminoimidazole	yes	no	0.729	0.836	0.430	1e-25
P50504	557	Phosphoribosylaminoimidaz	N/A	no	0.755	0.265	0.422	1e-24
Q44679	177	N5-carboxyaminoimidazole	N/A	no	0.734	0.813	0.406	2e-24
O74197	570	Phosphoribosylaminoimidaz	yes	no	0.734	0.252	0.413	2e-23
P15567	552	Phosphoribosylaminoimidaz	yes	no	0.811	0.288	0.375	1e-22

>sp|O58058|PURE_PYRHO N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=purE PE=3 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 107/150 (71%), Gaps = 1/150 (0%)

Query: 48  LAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG 107
           + ++ P+VGIIM SD DLPVM +AAR L +FGVPYEI I+  H+  + A  YA  A+ERG
Sbjct: 5   MKSEKPLVGIIMGSDSDLPVMKEAARILEEFGVPYEITIISAHRTPERAYEYAKKAEERG 64

Query: 108 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRN 166
           I++II G G  AHL G+ A+ + + VI VP+ S+  +  D +++ ++MPS + VA+V  +
Sbjct: 65  IEVIIAGAGGAAHLPGIIASLTVLPVIGVPIKSKALNGLDSLLSIVQMPSGIPVATVAID 124

Query: 167 NAKNAALYAVKVLGIADEDLLERIRKYVEE 196
           NAKNAAL A+++LGI   ++ E++R+Y+++
Sbjct: 125 NAKNAALLALRILGIKYPEIKEKLRRYMKD 154

Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 1EC: 8

>sp|Q9UY68|PURE_PYRAB N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=purE PE=3 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 98/145 (67%), Gaps = 1/145 (0%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P VGIIM SD DLPVM +AA+ L DF V YE+K++  H+  +    YA +A+ERGI++II
Sbjct: 7   PKVGIIMGSDSDLPVMKEAAKVLEDFEVDYEMKVISAHRTPERLHEYARTAEERGIEVII 66

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKNA 171
            G G  AHL GV AA + I VI VP+ S+  +  D +++ ++MP  + VA+V  + AKNA
Sbjct: 67  AGAGGAAHLPGVLAALTMIPVIGVPIKSKALNGLDSLLSIVQMPPGIPVATVGIDGAKNA 126

Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
           AL A+++L I   ++ E+++KY E+
Sbjct: 127 ALLALEILSIKYPEIKEKLKKYRED 151

Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|Q92210|PUR6_CANAL Phosphoribosylaminoimidazole carboxylase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ADE2 PE=3 SV=2

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 1/154 (0%)

Query: 42  LPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 101
           +P+ L    ++P+VGIIM SD DLPVM   AR L  FGVP+E+ I+  H+       YA+
Sbjct: 386 IPKSLATDKESPLVGIIMGSDSDLPVMAVGARILKQFGVPFELTIVSAHRTPHRMSEYAI 445

Query: 102 SAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQV 160
            A +RG+K II G G  AHL G+ AA + + VI VP+        D ++SI +MP  + V
Sbjct: 446 EAPKRGLKCIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPV 505

Query: 161 ASVPRNNAKNAALYAVKVLGIADEDLLERIRKYV 194
           A+V  NN+ NAAL A+++LG  D   L  + +Y+
Sbjct: 506 ATVAINNSTNAALLAIRILGAYDSKWLTEMNQYM 539

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P55195|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PURKE PE=2 SV=1

 Score =  116 bits (291), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 106/179 (59%), Gaps = 8/179 (4%)

Query: 26  CQIVYVPAACPSTKSCLPRFL-------LLAADAPIVGIIMESDLDLPVMNDAARTLSDF 78
           C I  V ++  S +S L   L         A  + ++G IM SD DLPVM  AA  +  F
Sbjct: 355 CHITIVGSSLSSIESNLAILLEGKGLHDKTAVCSTLLGFIMGSDSDLPVMKSAAEMMEMF 414

Query: 79  GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 138
           GVP+E++I+  H+  +    YA SA ERG ++II G G  AHL G+ A+ + + V+ VP+
Sbjct: 415 GVPHEVRIVSAHRTPELMFCYASSAHERGYQVIIAGAGGAAHLPGMVASLTPLPVVGVPV 474

Query: 139 LSEDWSE-DDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 196
            +      D +++ ++MP  V VA+V  NNA NA L AV++LG+A+++LL R+ +Y E+
Sbjct: 475 RASTLDGLDSLLSIVQMPRGVPVATVAVNNATNAGLLAVRMLGVANDNLLSRMSQYQED 533

Vigna aconitifolia (taxid: 3918)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P21264|PUR6_YEAST Phosphoribosylaminoimidazole carboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADE2 PE=1 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 90/143 (62%), Gaps = 1/143 (0%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P+VGIIM SD DLPVM+ A   L DFGVP+E+ I+  H+      +YA+SA +RGIK II
Sbjct: 403 PLVGIIMGSDSDLPVMSAACAVLKDFGVPFEVTIVSAHRTPHRMSAYAISASKRGIKTII 462

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNA 171
            G G  AHL G+ AA + + VI VP+        D ++SI +MP  V VA+V  NN+ NA
Sbjct: 463 AGAGGAAHLPGMVAAMTPLPVIGVPVKGSCLDGVDSLHSIVQMPRGVPVATVAINNSTNA 522

Query: 172 ALYAVKVLGIADEDLLERIRKYV 194
           AL AV++LG  D     ++ +++
Sbjct: 523 ALLAVRLLGAYDSSYTTKMEQFL 545

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q9WYS7|PURE_THEMA N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=purE PE=1 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 90/144 (62%), Gaps = 1/144 (0%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA +A+ERGI++II
Sbjct: 2   PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 61

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKNA 171
            G G  AHL G+ A+ + + VI VP+ +   +  D + + ++MP  V VA+V  NNAKNA
Sbjct: 62  AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 121

Query: 172 ALYAVKVLGIADEDLLERIRKYVE 195
            + A  +LGI   ++  ++++Y E
Sbjct: 122 GILAASILGIKYPEIARKVKEYKE 145

Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|P50504|PUR6_SCHOC Phosphoribosylaminoimidazole carboxylase OS=Schwanniomyces occidentalis GN=ADE2 PE=3 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 90/149 (60%), Gaps = 1/149 (0%)

Query: 47  LLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 106
           L+  + P+V IIM SD DLPVM+  A  L  FGVP+E+ I+  H+       YA+ A +R
Sbjct: 387 LIPKEKPLVSIIMGSDSDLPVMSVGANILKRFGVPFELTIVSAHRTPHRMTQYAIEAPKR 446

Query: 107 GIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPR 165
           G+K+II G G  AHL G+ AA + + VI VP+        D ++SI +MP  + VA+V  
Sbjct: 447 GLKVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPVATVAI 506

Query: 166 NNAKNAALYAVKVLGIADEDLLERIRKYV 194
           NN+ NAAL AV++LG  D   L  + +Y+
Sbjct: 507 NNSTNAALLAVRILGAYDYKWLNEMNQYM 535

Schwanniomyces occidentalis (taxid: 27300)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q44679|PURE_CORAM N5-carboxyaminoimidazole ribonucleotide mutase OS=Corynebacterium ammoniagenes GN=purE PE=3 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 90/145 (62%), Gaps = 1/145 (0%)

Query: 52  APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 111
           AP+VG+IM SD D P +  AA  L +FGVP+E+ ++  H+  ++ L YA  A  RGIK+I
Sbjct: 3   APLVGLIMGSDSDWPTVEPAAEVLDEFGVPFEVGVVSAHRTPEKMLDYAKQAHTRGIKVI 62

Query: 112 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKN 170
           +   G  AHL G+ AA + + VI +P   +D    D +++ ++MP+ V VA+V    AKN
Sbjct: 63  VACAGGAAHLPGMVAAATPLPVIGIPRALKDLEGLDSLLSIVQMPAGVPVATVSIGGAKN 122

Query: 171 AALYAVKVLGIADEDLLERIRKYVE 195
           A L A++ LG+   +L+ER+  Y E
Sbjct: 123 AGLLAIRTLGVQYSELVERMADYQE 147

Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).

Corynebacterium ammoniagenes (taxid: 1697)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|O74197|PUR6_CANGA Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ADE2 PE=3 SV=2

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 1/145 (0%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P+VG+IM SD DLPVM+ A + L  F VP+E+ I+  H+       YA  A  RGIK+II
Sbjct: 402 PLVGVIMGSDSDLPVMSAACKMLEQFEVPFEVTIVSAHRTPYRMNKYASEAVSRGIKVII 461

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNA 171
            G G  AHL G+ AA + + VI VP+        D ++SI +MP  V VA+V  NN+ NA
Sbjct: 462 AGAGGAAHLPGMVAAMTPVPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVATVAINNSTNA 521

Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
            + AV++LGI + D ++++ +++ +
Sbjct: 522 GILAVRMLGIHNYDYVKKMEEFLNK 546

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P15567|PUR6_SCHPO Phosphoribosylaminoimidazole carboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ade6 PE=3 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 37  STKSCLPRFLLL-----AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ 91
           S + C  R+ +L       ++P+VGIIM SD DL  M DAA  L +F VPYE+ I+  H+
Sbjct: 365 SPQECERRYQMLLDVKDPVESPVVGIIMGSDSDLSKMKDAAVILDEFKVPYELTIVSAHR 424

Query: 92  NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINS 151
                ++YA +A  RG+++II G G  AHL G+ AA + + VI VP+        D ++S
Sbjct: 425 TPDRMVTYARTAASRGLRVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHS 484

Query: 152 I-RMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 195
           I +MP  V VA+V  NN++NA + A ++L      LL  +  +++
Sbjct: 485 IVQMPRGVPVATVAINNSQNAGILACRILATFQPSLLAAMESFMD 529

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
14590237	177	phosphoribosylaminoimidazole carboxylase	0.760	0.841	0.46	2e-29
449442114	586	PREDICTED: phosphoribosylaminoimidazole	0.755	0.252	0.477	6e-29
449490248	586	PREDICTED: phosphoribosylaminoimidazole	0.755	0.252	0.477	7e-29
357441429	641	Phosphoribosylaminoimidazole carboxylase	0.755	0.230	0.483	1e-28
410667200	164	phosphoribosylaminoimidazole carboxylase	0.739	0.884	0.493	3e-28
356535191	633	PREDICTED: phosphoribosylaminoimidazole	0.739	0.229	0.486	4e-28
13173434	623	phosphoribosylaminoimidazole carboxylase	0.75	0.235	0.493	5e-28
37983592	621	phosphoribosylaminoimidazole carboxylase	0.75	0.236	0.493	6e-28
297823643	645	hypothetical protein ARALYDRAFT_321477 [	0.744	0.226	0.462	2e-27
356576720	633	PREDICTED: phosphoribosylaminoimidazole	0.744	0.230	0.482	2e-27

>gi|14590237|ref|NP_142303.1| phosphoribosylaminoimidazole carboxylase catalytic subunit [Pyrococcus horikoshii OT3] gi|3914493|sp|O58058.1|PURE_PYRHO RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; AltName: Full=5-(carboxyamino)imidazole ribonucleotide mutase gi|3256711|dbj|BAA29394.1| 177aa long hypothetical phosphoribosylaminoimidazole carboxylase catalytic subunit [Pyrococcus horikoshii OT3]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 107/150 (71%), Gaps = 1/150 (0%)

Query: 48  LAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG 107
           + ++ P+VGIIM SD DLPVM +AAR L +FGVPYEI I+  H+  + A  YA  A+ERG
Sbjct: 5   MKSEKPLVGIIMGSDSDLPVMKEAARILEEFGVPYEITIISAHRTPERAYEYAKKAEERG 64

Query: 108 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRN 166
           I++II G G  AHL G+ A+ + + VI VP+ S+  +  D +++ ++MPS + VA+V  +
Sbjct: 65  IEVIIAGAGGAAHLPGIIASLTVLPVIGVPIKSKALNGLDSLLSIVQMPSGIPVATVAID 124

Query: 167 NAKNAALYAVKVLGIADEDLLERIRKYVEE 196
           NAKNAAL A+++LGI   ++ E++R+Y+++
Sbjct: 125 NAKNAALLALRILGIKYPEIKEKLRRYMKD 154

Source: Pyrococcus horikoshii OT3

Species: Pyrococcus horikoshii

Genus: Pyrococcus

Family: Thermococcaceae

Order: Thermococcales

Class: Thermococci

Phylum: Euryarchaeota

Superkingdom: Archaea

>gi|449442114|ref|XP_004138827.1| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Cucumis sativus]

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 101/153 (66%), Gaps = 5/153 (3%)

Query: 49  AADAPIV----GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 104
           A++ P+V    GIIM SD D PVM DAA+ L  FGVPYEIKI+  H+      SYA SA+
Sbjct: 414 ASEKPVVEHRVGIIMGSDSDFPVMRDAAKVLDTFGVPYEIKIVSAHRTPHWMFSYASSAQ 473

Query: 105 ERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASV 163
           ERGI++II G G  AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V
Sbjct: 474 ERGIQVIIAGAGGAAHLPGMVASLTPLPVIGVPVRASTLDGLDSLLSIVQMPRGVPVATV 533

Query: 164 PRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 196
             NNA NA L AV++LG+AD DLL R+ ++ E+
Sbjct: 534 AINNATNAGLLAVRMLGVADADLLSRMSQFQED 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490248|ref|XP_004158550.1| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Cucumis sativus]

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 101/153 (66%), Gaps = 5/153 (3%)

Query: 49  AADAPIV----GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 104
           A++ P+V    GIIM SD D PVM DAA+ L  FGVPYEIKI+  H+      SYA SA+
Sbjct: 414 ASEKPVVEHRVGIIMGSDSDFPVMRDAAKVLDTFGVPYEIKIVSAHRTPHWMFSYASSAQ 473

Query: 105 ERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASV 163
           ERGI++II G G  AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V
Sbjct: 474 ERGIQVIIAGAGGAAHLPGMVASLTPLPVIGVPVRASTLDGLDSLLSIVQMPRGVPVATV 533

Query: 164 PRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 196
             NNA NA L AV++LG+AD DLL R+ ++ E+
Sbjct: 534 AINNATNAGLLAVRMLGVADADLLSRMSQFQED 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441429|ref|XP_003590992.1| Phosphoribosylaminoimidazole carboxylase [Medicago truncatula] gi|355480040|gb|AES61243.1| Phosphoribosylaminoimidazole carboxylase [Medicago truncatula]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 98/149 (65%), Gaps = 1/149 (0%)

Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
            A AP VGIIM SD DLPVM  AA  L  FGVP+E++I+  H+  +   SYA  A ERGI
Sbjct: 468 TAVAPRVGIIMGSDSDLPVMKCAAEILEKFGVPHEVEIVSAHRTPERMFSYASFASERGI 527

Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNN 167
           K+II G G  AHL G+ AA + + VI VP+        D +++ ++MP  V VA++  NN
Sbjct: 528 KVIIAGAGGAAHLPGMVAAITPLPVIGVPVRGSSLDGVDSLLSIVQMPRGVPVATIAINN 587

Query: 168 AKNAALYAVKVLGIADEDLLERIRKYVEE 196
           A NA L AV++LG+ADE+LL R+ +Y+E+
Sbjct: 588 ATNAGLLAVRILGVADENLLSRMSQYLED 616

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410667200|ref|YP_006919571.1| phosphoribosylaminoimidazole carboxylase catalytic subunit PurE [Thermacetogenium phaeum DSM 12270] gi|409104947|gb|AFV11072.1| phosphoribosylaminoimidazole carboxylase catalytic subunit PurE [Thermacetogenium phaeum DSM 12270]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 97/146 (66%), Gaps = 1/146 (0%)

Query: 51  DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 110
           + P+VGI++ SD DLPVM +AAR L DFGVPYE+ I   H++   A  YA +A+ERG+K+
Sbjct: 2   EKPLVGIVLGSDSDLPVMEEAARILDDFGVPYEMTIASAHRSPDLAAEYARTAEERGLKL 61

Query: 111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAK 169
           +I G G+ AHL GV AA + + VI VPL     +  D + SI +MP  V VA+V  N A+
Sbjct: 62  LIAGAGMAAHLPGVLAAYTCLPVIGVPLQGGALNGVDALYSIVQMPPGVPVAAVAINGAR 121

Query: 170 NAALYAVKVLGIADEDLLERIRKYVE 195
           NAAL AV++LG+ +  L ER R Y E
Sbjct: 122 NAALLAVQILGLGEPLLRERFRTYKE 147

Source: Thermacetogenium phaeum DSM 12270

Species: Thermacetogenium phaeum

Genus: Thermacetogenium

Family: Thermoanaerobacteraceae

Order: Thermoanaerobacterales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|356535191|ref|XP_003536132.1| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max]

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 1/146 (0%)

Query: 52  APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 111
           AP VGIIM SD DLPVM  AA  L  FGVP+E++I+  H+  +   SYA SA ERGI++I
Sbjct: 464 APCVGIIMGSDSDLPVMKSAAEILEMFGVPHEVRIVSAHRTPELMFSYASSAHERGIQVI 523

Query: 112 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKN 170
           I G G  AHL G+ AA + + VI VP+ +      D +++ ++MP  V VA+V  NNA N
Sbjct: 524 IAGAGGAAHLPGMVAALTPLPVIGVPVRASTLDGIDSLLSIVQMPRGVPVATVAVNNATN 583

Query: 171 AALYAVKVLGIADEDLLERIRKYVEE 196
           A L AV++LG+A++DLL R+ +Y E+
Sbjct: 584 AGLLAVRMLGVANDDLLSRMSRYQED 609

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13173434|gb|AAK14408.1| phosphoribosylaminoimidazole carboxylase [Nicotiana tabacum]

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 100/148 (67%), Gaps = 1/148 (0%)

Query: 50  ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
           A AP VGIIM SD DLPVM DAA+ L++F VP E+KI+  H+  +   SYALSA+ERGI+
Sbjct: 453 AVAPRVGIIMGSDSDLPVMKDAAKILNEFDVPAEVKIVSAHRTPEMMFSYALSARERGIQ 512

Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNA 168
           +II G G  AHL G+ AA + + VI VP+ +      D +++ ++MP  V VA+V  NNA
Sbjct: 513 VIIAGAGGAAHLPGMVAAFTPLPVIGVPVRASTLDGLDSLLSIVQMPRGVPVATVAINNA 572

Query: 169 KNAALYAVKVLGIADEDLLERIRKYVEE 196
            NA L AV++LGI+D  L  R+ +Y E+
Sbjct: 573 TNAGLLAVRLLGISDIKLQARMAQYQED 600

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37983592|gb|AAR06291.1| phosphoribosylaminoimidazole carboxylase, partial [Nicotiana tabacum]

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 100/148 (67%), Gaps = 1/148 (0%)

Query: 50  ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
           A AP VGIIM SD DLPVM DAA+ L++F VP E+KI+  H+  +   SYALSA+ERGI+
Sbjct: 451 AVAPRVGIIMGSDSDLPVMKDAAKILNEFDVPAEVKIVSAHRTPEMMFSYALSARERGIQ 510

Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNA 168
           +II G G  AHL G+ AA + + VI VP+ +      D +++ ++MP  V VA+V  NNA
Sbjct: 511 VIIAGAGGAAHLPGMVAAFTPLPVIGVPVRASTLDGLDSLLSIVQMPRGVPVATVAINNA 570

Query: 169 KNAALYAVKVLGIADEDLLERIRKYVEE 196
            NA L AV++LGI+D  L  R+ +Y E+
Sbjct: 571 TNAGLLAVRLLGISDIKLQARMAQYQED 598

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823643|ref|XP_002879704.1| hypothetical protein ARALYDRAFT_321477 [Arabidopsis lyrata subsp. lyrata] gi|297325543|gb|EFH55963.1| hypothetical protein ARALYDRAFT_321477 [Arabidopsis lyrata subsp. lyrata]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)

Query: 51  DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 110
           + P VGIIM SD DLPVM DAA+ L  FGV +E++I+  H+  +   +YA SA  RG+++
Sbjct: 476 ETPRVGIIMGSDTDLPVMKDAAKILDLFGVTHEVRIVSAHRTPEMMFTYAASAHSRGVQV 535

Query: 111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAK 169
           II G G  AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V  NNA 
Sbjct: 536 IIAGAGGAAHLPGMVASLTPLPVIGVPVRATRLDGVDSLLSIVQMPRGVPVATVAINNAT 595

Query: 170 NAALYAVKVLGIADEDLLERIRKYVEE 196
           NAAL AV++LGI+D DL+ R+R+Y E+
Sbjct: 596 NAALLAVRMLGISDTDLVSRMRQYQED 622

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576720|ref|XP_003556478.1| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 98/147 (66%), Gaps = 1/147 (0%)

Query: 50  ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
           A AP VGIIM SD DLPVM  AA  L  FGVP+E++I+  H+  +   SYA SA ERGI+
Sbjct: 462 AVAPHVGIIMGSDSDLPVMKSAAEILEMFGVPHEVRIVSAHRTPELMFSYASSAHERGIQ 521

Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNA 168
           +II G G  AHL G+ AA + + VI VP+ +      D +++ ++MP  V VA+V  NNA
Sbjct: 522 VIIAGAGGAAHLPGMVAALTPLPVIGVPVRASTLDGIDSLLSIVQMPRGVPVATVAVNNA 581

Query: 169 KNAALYAVKVLGIADEDLLERIRKYVE 195
            NA L AV++LG+A+++LL R+ +Y E
Sbjct: 582 TNAGLLAVRMLGVANDNLLSRMSQYQE 608

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
CGD|CAL0003241	568	ADE2 [Candida albicans (taxid:	0.780	0.269	0.422	1.9e-27
UNIPROTKB|Q92210	568	ADE2 "Phosphoribosylaminoimida	0.780	0.269	0.422	1.9e-27
TAIR|locus:2040771	642	AT2G37690 [Arabidopsis thalian	0.744	0.227	0.462	4.2e-27
SGD|S000005654	571	ADE2 "Phosphoribosylaminoimida	0.724	0.248	0.454	3.8e-26
TAIR|locus:2051314	162	AT2G05140 "AT2G05140" [Arabido	0.704	0.851	0.453	3.6e-25
UNIPROTKB|P96880	174	purE "N5-carboxyaminoimidazole	0.724	0.816	0.426	1.8e-23
POMBASE|SPCC1322.13	552	ade6 "phosphoribosylaminoimida	0.846	0.300	0.366	4.5e-22
TIGR_CMR|GSU_0611	169	GSU_0611 "phosphoribosylaminoi	0.719	0.834	0.409	5.5e-22
TIGR_CMR|CHY_1069	162	CHY_1069 "phosphoribosylaminoi	0.724	0.876	0.373	1.1e-21
TIGR_CMR|CPS_0026	160	CPS_0026 "phosphoribosylaminoi	0.709	0.868	0.373	1.2e-19

CGD|CAL0003241 ADE2 [Candida albicans (taxid:5476)]

 Score = 293 (108.2 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
 Identities = 65/154 (42%), Positives = 93/154 (60%)

Query:    42 LPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 101
             +P+ L    ++P+VGIIM SD DLPVM   AR L  FGVP+E+ I+  H+       YA+
Sbjct:   386 IPKSLATDKESPLVGIIMGSDSDLPVMAVGARILKQFGVPFELTIVSAHRTPHRMSEYAI 445

Query:   102 SAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQV 160
              A +RG+K II G G  AHL G+ AA + + VI VP+        D ++SI +MP  + V
Sbjct:   446 EAPKRGLKCIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPV 505

Query:   161 ASVPRNNAKNAALYAVKVLGIADEDLLERIRKYV 194
             A+V  NN+ NAAL A+++LG  D   L  + +Y+
Sbjct:   506 ATVAINNSTNAALLAIRILGAYDSKWLTEMNQYM 539

GO:0046084 "adenine biosynthetic process" evidence=IGI;IMP

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IGI;ISS;IMP;NAS

GO:0006164 "purine nucleotide biosynthetic process" evidence=ISS

GO:0009405 "pathogenesis" evidence=IMP

GO:0005829 "cytosol" evidence=IEA

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

UNIPROTKB|Q92210 ADE2 "Phosphoribosylaminoimidazole carboxylase" [Candida albicans SC5314 (taxid:237561)]

 Score = 293 (108.2 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
 Identities = 65/154 (42%), Positives = 93/154 (60%)

Query:    42 LPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 101
             +P+ L    ++P+VGIIM SD DLPVM   AR L  FGVP+E+ I+  H+       YA+
Sbjct:   386 IPKSLATDKESPLVGIIMGSDSDLPVMAVGARILKQFGVPFELTIVSAHRTPHRMSEYAI 445

Query:   102 SAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQV 160
              A +RG+K II G G  AHL G+ AA + + VI VP+        D ++SI +MP  + V
Sbjct:   446 EAPKRGLKCIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGIPV 505

Query:   161 ASVPRNNAKNAALYAVKVLGIADEDLLERIRKYV 194
             A+V  NN+ NAAL A+++LG  D   L  + +Y+
Sbjct:   506 ATVAINNSTNAALLAIRILGAYDSKWLTEMNQYM 539

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IGI;ISS;NAS;IMP

GO:0006164 "purine nucleotide biosynthetic process" evidence=ISS

GO:0009405 "pathogenesis" evidence=IMP

GO:0046084 "adenine biosynthetic process" evidence=IGI;IMP

TAIR|locus:2040771 AT2G37690 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 68/147 (46%), Positives = 98/147 (66%)

Query:    51 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 110
             + P V IIM SD DLPVM DAA+ L  FGV +E+KI+  H+  +   +YA SA  RG+++
Sbjct:   473 ETPRVAIIMGSDTDLPVMKDAAKILDLFGVTHEVKIVSAHRTPEMMYTYATSAHSRGVQV 532

Query:   111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAK 169
             II G G  AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V  NNA 
Sbjct:   533 IIAGAGGAAHLPGMVASLTPLPVIGVPVRATRLDGVDSLLSIVQMPRGVPVATVAINNAT 592

Query:   170 NAALYAVKVLGIADEDLLERIRKYVEE 196
             NAAL AV++LGI+D DL+ R+R+Y E+
Sbjct:   593 NAALLAVRMLGISDTDLVSRMRQYQED 619

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

SGD|S000005654 ADE2 "Phosphoribosylaminoimidazole carboxylase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 289 (106.8 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
 Identities = 65/143 (45%), Positives = 90/143 (62%)

Query:    53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
             P+VGIIM SD DLPVM+ A   L DFGVP+E+ I+  H+      +YA+SA +RGIK II
Sbjct:   403 PLVGIIMGSDSDLPVMSAACAVLKDFGVPFEVTIVSAHRTPHRMSAYAISASKRGIKTII 462

Query:   113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNA 171
              G G  AHL G+ AA + + VI VP+        D ++SI +MP  V VA+V  NN+ NA
Sbjct:   463 AGAGGAAHLPGMVAAMTPLPVIGVPVKGSCLDGVDSLHSIVQMPRGVPVATVAINNSTNA 522

Query:   172 ALYAVKVLGIADEDLLERIRKYV 194
             AL AV++LG  D     ++ +++
Sbjct:   523 ALLAVRLLGAYDSSYTTKMEQFL 545

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;TAS

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IEA;IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0006144 "purine nucleobase metabolic process" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2051314 AT2G05140 "AT2G05140" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 63/139 (45%), Positives = 92/139 (66%)

Query:    59 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 118
             M SD DL VM DAA+ L  FGV +E+KI+  H+  +   +YA SA  RG+++II G G  
Sbjct:     1 MGSDTDLLVMKDAAKILDMFGVTHEVKIVSAHRTPEMMYTYATSAHSRGVQVIIAGAGGA 60

Query:   119 AHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKNAALYAVK 177
             AHL G+ A+ + + VI VP+ +      D +++ ++MP  V VA+V  NNA NAAL AV+
Sbjct:    61 AHLPGMVASLTPLPVIGVPVQATRLDGVDSLLSIVQMPRGVPVATVAINNATNAALLAVR 120

Query:   178 VLGIADEDLLERIRKYVEE 196
             +LGI+D DL+ R+R+Y E+
Sbjct:   121 MLGISDNDLVSRMRQYQED 139

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=ISS

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;ISS

GO:0009320 "phosphoribosylaminoimidazole carboxylase complex" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

UNIPROTKB|P96880 purE "N5-carboxyaminoimidazole ribonucleotide mutase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 61/143 (42%), Positives = 89/143 (62%)

Query:    49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
             A + P VG+IM SD D PVM DAA  L++F +P E++++  H+  +   SYA  A ERG+
Sbjct:     4 AGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAERGL 63

Query:   109 KIIIVGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNN 167
             ++II G G  AHL G+ AA + + VI VP+ L      D +++ ++MP+ V VA+V    
Sbjct:    64 EVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGG 123

Query:   168 AKNAALYAVKVLGIADEDLLERI 190
             A NA L AV++LG A+  L  RI
Sbjct:   124 AGNAGLLAVRMLGAANPQLRARI 146

GO:0040007 "growth" evidence=IMP

POMBASE|SPCC1322.13 ade6 "phosphoribosylaminoimidazole carboxylase Ade6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 264 (98.0 bits), Expect = 4.5e-22, P = 4.5e-22
 Identities = 63/172 (36%), Positives = 97/172 (56%)

Query:    30 YVPAACPSTKSCLPRFLLLA-----ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEI 84
             +V     S + C  R+ +L       ++P+VGIIM SD DL  M DAA  L +F VPYE+
Sbjct:   358 HVTIISDSPQECERRYQMLLDVKDPVESPVVGIIMGSDSDLSKMKDAAVILDEFKVPYEL 417

Query:    85 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWS 144
              I+  H+     ++YA +A  RG+++II G G  AHL G+ AA + + VI VP+      
Sbjct:   418 TIVSAHRTPDRMVTYARTAASRGLRVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLD 477

Query:   145 EDDVINSI-RMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 195
               D ++SI +MP  V VA+V  NN++NA + A ++L      LL  +  +++
Sbjct:   478 GVDSLHSIVQMPRGVPVATVAINNSQNAGILACRILATFQPSLLAAMESFMD 529

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=ISO

GO:0009113 "purine nucleobase biosynthetic process" evidence=ISO

GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046938 "phytochelatin biosynthetic process" evidence=IMP

GO:0070814 "hydrogen sulfide biosynthetic process" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

TIGR_CMR|GSU_0611 GSU_0611 "phosphoribosylaminoimidazole carboxylase, catalytic subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 59/144 (40%), Positives = 90/144 (62%)

Query:    53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
             P V IIM SD D+PVM +AA+ L  FGV +E+++   H++ K+A   A +A  RG+K II
Sbjct:     4 PQVLIIMGSDSDVPVMEEAAKALDAFGVTWEMRVASAHRSPKKAADLASNAAARGVKAII 63

Query:   113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINS-IRMPSHVQVAS--VPRNNAK 169
              G GV AHL+GV AA + + VI VP+     +  D + S ++MP  + VA+  + +  AK
Sbjct:    64 AGAGVAAHLAGVLAAETILPVIAVPMPGGALNGVDALYSMVQMPGGIPVATMAIGKAGAK 123

Query:   170 NAALYAVKVLGIADEDLLERIRKY 193
             NA L+AV++L + D  +  R+ +Y
Sbjct:   124 NAGLFAVQILALGDAAMAGRLVEY 147

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1069 CHY_1069 "phosphoribosylaminoimidazole carboxylase, catalytic subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 53/142 (37%), Positives = 88/142 (61%)

Query:    55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
             V ++M SD D  ++  A   L +FGV YE+K+   H+   +AL++A +A+E+G  +II  
Sbjct:     4 VAVVMGSDSDWEIVKKAVEVLKEFGVEYEVKVASAHRTPDKALNFARTAREKGFGVIIAA 63

Query:   115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALY 174
              G+ AHL GV AA + + VI +P+ +     D +++  +MP  V VA+V  N AKNA L 
Sbjct:    64 AGMAAHLPGVLAAVTTLPVIGLPIKASIEGIDSLLSIAQMPPGVPVATVGINAAKNAGLL 123

Query:   175 AVKVLGIADEDLLERIRKYVEE 196
             AV++L + D++L  +++ Y E+
Sbjct:   124 AVQILSLNDKNLAGKLQAYKEK 145

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_0026 CPS_0026 "phosphoribosylaminoimidazole carboxylase, catalytic subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 53/142 (37%), Positives = 83/142 (58%)

Query:    55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
             VGIIM S  D P M   A  L   GV YE K++  H+       YA SAK+RGIK+II G
Sbjct:     3 VGIIMGSKSDWPTMQHTAEMLDSLGVQYETKVVSAHRTPHLLAEYAESAKDRGIKVIIAG 62

Query:   115 DGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNA--KNA 171
              G  AHL G+AAA + + V+ VP+ S+  + +D +++ ++MP  + V ++   NA   NA
Sbjct:    63 AGGAAHLPGMAAAYTSLPVLGVPVQSKALNGQDSLLSIVQMPKGIAVGTLAIGNAGAANA 122

Query:   172 ALYAVKVLGIADEDLLERIRKY 193
              L A +++G  + ++ + I ++
Sbjct:   123 GLLAAQIIGTHNTEIQQNIEEF 144

GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	5.4.99.18	0.824
3rd Layer	5.4.99	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	purE	phosphoribosylaminoimidazole carboxylase catalytic subunit; This subunit can alone transform AIR to CAIR, but in association with purK, which possesses an ATPase activity, an enzyme complex is produced which is capable of converting AIR to CAIR efficiently under physiological condition (By similarity) (177 aa)
		(Pyrococcus horikoshii)
Predicted Functional Partners:
	purC	phosphoribosylaminoimidazole-succinocarboxamide synthase (238 aa)	•	•		•		•	•		0.999
	purD	phosphoribosylamine--glycine ligase (438 aa)	•	•	•	•	•	•	•		0.999
	purT	phosphoribosylglycinamide formyltransferase 2; Catalyzes two reactions- the first one is the pr [...] (433 aa)	•	•		•		•	•		0.999
	purF	amidophosphoribosyltransferase (449 aa)	•		•	•	•	•	•		0.998
	purM	phosphoribosylaminoimidazole synthetase (334 aa)	•		•	•	•	•	•		0.997
	purB	adenylosuccinate lyase (450 aa)	•			•	•	•	•		0.996
	purQ	phosphoribosylformylglycinamidine synthase I (227 aa)	•			•		•	•		0.982
	glnA	glutamine synthetase (443 aa)	•						•		0.976
	purL	phosphoribosylformylglycinamidine synthase II (705 aa)	•					•	•		0.964
	purA	adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotid [...] (339 aa)	•			•			•		0.961

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
TIGR01162	156	TIGR01162, purE, phosphoribosylaminoimidazole carb	6e-43
pfam00731	150	pfam00731, AIRC, AIR carboxylase	1e-41
COG0041	162	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole	2e-41
PLN02948	577	PLN02948, PLN02948, phosphoribosylaminoimidazole c	2e-40
smart01001	152	smart01001, AIRC, AIR carboxylase	2e-37

>gnl|CDD|130230 TIGR01162, purE, phosphoribosylaminoimidazole carboxylase, PurE protein

 Score =  140 bits (356), Expect = 6e-43
 Identities = 66/143 (46%), Positives = 93/143 (65%), Gaps = 1/143 (0%)

Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           VGIIM SD DLP M  AA  L +FG+PYE++++  H+  +  L YA  A+ERGIK+II G
Sbjct: 1   VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAG 60

Query: 115 DGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 173
            G  AHL G+ AA + + VI VP+        D +++ ++MPS V VA+V   NA NAAL
Sbjct: 61  AGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAAL 120

Query: 174 YAVKVLGIADEDLLERIRKYVEE 196
            A ++LGI D +L E++++Y E 
Sbjct: 121 LAAQILGIKDPELAEKLKEYREN 143

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 156

>gnl|CDD|144362 pfam00731, AIRC, AIR carboxylase

 Score =  137 bits (347), Expect = 1e-41
 Identities = 64/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P VGIIM SD DLP M  AA+ L +FG+PYE++++  H+  +    YA  A+ RGIK+II
Sbjct: 1   PKVGIIMGSDSDLPTMEKAAKVLKEFGIPYEVRVVSAHRTPERLFEYAKEAEARGIKVII 60

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAKNA 171
            G G  AHL G+ AA + + VI VP+ S+     D +++ ++MPS + VA+V    AKNA
Sbjct: 61  AGAGGAAHLPGMVAALTTLPVIGVPVKSKALGGLDSLLSIVQMPSGIPVATVAIGGAKNA 120

Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
           AL A ++L + D +L E++  Y EE
Sbjct: 121 ALLAAQILALKDPELAEKLEAYREE 145

Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain. Length = 150

>gnl|CDD|223119 COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]

 Score =  137 bits (346), Expect = 2e-41
 Identities = 62/147 (42%), Positives = 92/147 (62%), Gaps = 1/147 (0%)

Query: 51  DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 110
             P VGIIM S  D   M  AA  L +FGVPYE++++  H+  ++   YA  A+ERG+K+
Sbjct: 1   MPPKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKV 60

Query: 111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAK 169
           II G G  AHL G+ AA + + VI VP+ S+  S  D +++ ++MP+ V VA+V   NA 
Sbjct: 61  IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAA 120

Query: 170 NAALYAVKVLGIADEDLLERIRKYVEE 196
           NAAL A ++L I D +L E++ ++ E 
Sbjct: 121 NAALLAAQILAIKDPELAEKLAEFREA 147

Length = 162

>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase

 Score =  144 bits (364), Expect = 2e-40
 Identities = 69/150 (46%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 48  LAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG 107
           L    P+VGIIM SD DLP M DAA  L  FGVPYE+ I+  H+  +   SYA SA  RG
Sbjct: 406 LPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRG 465

Query: 108 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRN 166
           +++II G G  AHL G+ A+ + + VI VP+ +      D + SI +MP  V VA+V   
Sbjct: 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIG 525

Query: 167 NAKNAALYAVKVLGIADEDLLERIRKYVEE 196
           NA NA L AV++LG +D DLL+++  Y E+
Sbjct: 526 NATNAGLLAVRMLGASDPDLLDKMEAYQED 555

Length = 577

>gnl|CDD|214965 smart01001, AIRC, AIR carboxylase

 Score =  126 bits (319), Expect = 2e-37
 Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P+VGIIM S  DLPVM +AA+TL +FG+PYE+ +   H+       YA  A++RGIK+II
Sbjct: 1   PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAEDRGIKVII 60

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVA--SVPRNNAK 169
            G G  AHL GV AA + + VI VP+ S      D +++ ++MPS + VA  ++  + A 
Sbjct: 61  AGAGGAAHLPGVVAALTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGIPVATVAIGIDGAF 120

Query: 170 NAALYAVKVLGIADEDLLERIRKY 193
           NAAL A ++L + D +L  ++  Y
Sbjct: 121 NAALLAAQILALNDPELAAKLAAY 144

Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain. Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
TIGR01162	156	purE phosphoribosylaminoimidazole carboxylase, Pur	100.0
COG0041	162	PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m	100.0
PF00731	150	AIRC: AIR carboxylase; InterPro: IPR000031 Phospho	100.0
PLN02948	577	phosphoribosylaminoimidazole carboxylase	100.0
COG1691	254	NCAIR mutase (PurE)-related proteins [General func	99.97
KOG2835	373	consensus Phosphoribosylamidoimidazole-succinocarb	99.88
KOG2835	373	consensus Phosphoribosylamidoimidazole-succinocarb	99.11
cd08170	351	GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox	97.46
PRK00843	350	egsA NAD(P)-dependent glycerol-1-phosphate dehydro	97.45
cd08550	349	GlyDH-like Glycerol_dehydrogenase-like. Families o	97.39
cd08175	348	G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c	97.23
cd08171	345	GlyDH-like2 Glycerol dehydrogenase-like. Glycerol	97.23
PRK09423	366	gldA glycerol dehydrogenase; Provisional	97.22
TIGR01357	344	aroB 3-dehydroquinate synthase. This model represe	97.21
cd08195	345	DHQS Dehydroquinate synthase (DHQS) catalyzes the	97.21
cd08551	370	Fe-ADH iron-containing alcohol dehydrogenases (Fe-	97.18
cd08173	339	Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro	97.08
cd08549	332	G1PDH_related Glycerol-1-phosphate_dehydrogenase a	97.06
cd07766	332	DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like)	97.02
PRK00002	358	aroB 3-dehydroquinate synthase; Reviewed	96.94
cd08185	380	Fe-ADH1 Iron-containing alcohol dehydrogenases-lik	96.92
cd08199	354	EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-	96.85
cd08197	355	DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly	96.83
cd08183	374	Fe-ADH2 Iron-containing alcohol dehydrogenases-lik	96.8
cd08182	367	HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c	96.77
cd08176	377	LPO Lactadehyde:propanediol oxidoreductase (LPO) c	96.73
cd08174	331	G1PDH-like Glycerol-1-phosphate dehydrogenase-like	96.72
cd08193	376	HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze	96.66
cd08194	375	Fe-ADH6 Iron-containing alcohol dehydrogenases-lik	96.61
cd08187	382	BDH Butanol dehydrogenase catalyzes the conversion	96.54
cd08186	383	Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ	96.54
TIGR02638	379	lactal_redase lactaldehyde reductase. This clade o	96.49
cd08189	374	Fe-ADH5 Iron-containing alcohol dehydrogenases-lik	96.46
PLN02834	433	3-dehydroquinate synthase	96.41
cd08192	370	Fe-ADH7 Iron-containing alcohol dehydrogenases-lik	96.41
cd08172	347	GlyDH-like1 Glycerol dehydrogenases-like. Glycerol	96.35
cd08181	357	PPD-like 1,3-propanediol dehydrogenase-like (PPD).	96.3
cd08178	398	AAD_C C-terminal alcohol dehydrogenase domain of t	96.28
PF13685	250	Fe-ADH_2: Iron-containing alcohol dehydrogenase; P	96.24
PF00465	366	Fe-ADH: Iron-containing alcohol dehydrogenase ; In	96.2
cd08177	337	MAR Maleylacetate reductase is involved in many ar	96.19
cd08191	386	HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz	96.13
cd08169	344	DHQ-like Dehydroquinate synthase-like which includ	96.13
cd08179	375	NADPH_BDH NADPH-dependent butanol dehydrogenase in	96.08
PRK15454	395	ethanol dehydrogenase EutG; Provisional	96.06
cd08188	377	Fe-ADH4 Iron-containing alcohol dehydrogenases-lik	95.96
PRK10624	382	L-1,2-propanediol oxidoreductase; Provisional	95.93
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	95.9
PRK09860	383	putative alcohol dehydrogenase; Provisional	95.88
cd08190	414	HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv	95.86
PRK06203	389	aroB 3-dehydroquinate synthase; Reviewed	95.77
cd08180	332	PDD 1,3-propanediol dehydrogenase (PPD) catalyzes	95.77
PRK10586	362	putative oxidoreductase; Provisional	95.74
cd08198	369	DHQS-like2 Dehydroquinate synthase (DHQS)-like. DH	95.28
PRK15138	387	aldehyde reductase; Provisional	95.26
COG0371	360	GldA Glycerol dehydrogenase and related enzymes [E	95.07
cd08196	346	DHQS-like1 Dehydroquinate synthase (DHQS)-like. DH	95.02
PRK15424	538	propionate catabolism operon regulatory protein Pr	94.72
PF06506	176	PrpR_N: Propionate catabolism activator; InterPro:	94.69
COG1454	377	EutG Alcohol dehydrogenase, class IV [Energy produ	93.94
PRK13805	862	bifunctional acetaldehyde-CoA/alcohol dehydrogenas	93.9
TIGR02417	327	fruct_sucro_rep D-fructose-responsive transcriptio	93.62
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	93.54
cd08184	347	Fe-ADH3 Iron-containing alcohol dehydrogenases-lik	93.31
PF04392	294	ABC_sub_bind: ABC transporter substrate binding pr	93.19
cd03786	363	GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th	93.11
cd06283	267	PBP1_RegR_EndR_KdgR_like Ligand-binding domain of	93.06
cd06280	263	PBP1_LacI_like_4 Ligand-binding domain of uncharac	92.91
cd06275	269	PBP1_PurR Ligand-binding domain of purine represso	92.9
COG3199	355	Predicted inorganic polyphosphate/ATP-NAD kinase [	92.67
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	92.32
TIGR03405	355	Phn_Fe-ADH phosphonate metabolism-associated iron-	92.17
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	91.79
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	91.63
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	91.59
cd06311	274	PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi	91.57
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	91.48
PRK13055	334	putative lipid kinase; Reviewed	91.19
cd06298	268	PBP1_CcpA_like Ligand-binding domain of the catabo	90.78
PRK11914	306	diacylglycerol kinase; Reviewed	90.71
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	90.6
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	90.51
COG0337	360	AroB 3-dehydroquinate synthetase [Amino acid trans	90.47
cd01537	264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	90.33
cd01539	303	PBP1_GGBP Periplasmic glucose/galactose-binding pr	90.3
PRK10653	295	D-ribose transporter subunit RbsB; Provisional	90.18
COG2984	322	ABC-type uncharacterized transport system, peripla	90.0
PRK13337	304	putative lipid kinase; Reviewed	89.96
PRK13054	300	lipid kinase; Reviewed	89.77
cd06273	268	PBP1_GntR_like_1 This group includes the ligand-bi	89.23
TIGR03702	293	lip_kinase_YegS lipid kinase YegS. Members of this	89.22
PRK10727	343	DNA-binding transcriptional regulator GalR; Provis	89.18
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	89.07
cd01541	273	PBP1_AraR Ligand-binding domain of DNA transcripti	89.01
TIGR00147	293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	88.83
cd06318	282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	88.31
PF00763	117	THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cycloh	87.79
cd06321	271	PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b	87.63
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	87.61
PRK10481	224	hypothetical protein; Provisional	87.57
PF00532	279	Peripla_BP_1: Periplasmic binding proteins and sug	87.43
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	87.41
cd01575	268	PBP1_GntR Ligand-binding domain of DNA transcripti	87.28
cd06310	273	PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi	87.21
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	86.98
cd06296	270	PBP1_CatR_like Ligand-binding domain of a LacI-lik	86.85
cd06320	275	PBP1_allose_binding Periplasmic allose-binding dom	86.23
TIGR02955	295	TMAO_TorT TMAO reductase system periplasmic protei	86.22
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	86.19
PRK00861	300	putative lipid kinase; Reviewed	85.58
PRK10014	342	DNA-binding transcriptional repressor MalI; Provis	85.54
cd01538	288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	85.43
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	85.29
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	85.2
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	85.19
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	84.79
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	84.78
COG1597	301	LCB5 Sphingosine kinase and enzymes related to euk	84.15
PRK10703	341	DNA-binding transcriptional repressor PurR; Provis	83.87
TIGR01481	329	ccpA catabolite control protein A. Catabolite cont	83.26
cd06290	265	PBP1_LacI_like_9 Ligand-binding domain of uncharac	82.18
cd00578	452	L-fuc_L-ara-isomerases L-fucose isomerase (FucIase	82.05
cd06308	270	PBP1_sensor_kinase_like Periplasmic binding domain	81.95
cd00764	762	Eukaryotic_PFK Phosphofructokinase, a key regulato	81.83
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	81.49
PF10096	243	DUF2334: Uncharacterized protein conserved in bact	81.44
cd06293	269	PBP1_LacI_like_11 Ligand-binding domain of unchara	81.22
cd06284	267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	81.01
PRK10310	94	PTS system galactitol-specific transporter subunit	80.89
cd06289	268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	80.75
PRK09526	342	lacI lac repressor; Reviewed	80.7
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	80.49
cd01540	289	PBP1_arabinose_binding Periplasmic L-arabinose-bin	80.17
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	80.08

>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein

Probab=100.00  E-value=7.5e-60  Score=385.89  Aligned_cols=142  Identities=48%  Similarity=0.748  Sum_probs=139.8

Q ss_pred             EEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEE
Q 029271           55 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI  134 (196)
Q Consensus        55 V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVI  134 (196)
                      |+|||||+||+++|+|+.++|++|||+||++|+||||+|+++.+|+++|+++|++|||++||++||||||+||+|++|||
T Consensus         1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVI   80 (156)
T TIGR01162         1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI   80 (156)
T ss_pred             CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          135 RVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       135 gvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      |||++++.++|+| ||||+|||+|+||+||+|+|++|||++|+|||+++|++||+||++||++
T Consensus        81 gvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~  143 (156)
T TIGR01162        81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYREN  143 (156)
T ss_pred             EecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999988899999 9999999999999999999999999999999999999999999999974

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.

>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.4e-59  Score=383.12  Aligned_cols=144  Identities=43%  Similarity=0.694  Sum_probs=141.8

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  132 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P  132 (196)
                      ++|+|||||+|||++|+++.++|++|||+||++|.||||||+++.+|+++++++|++||||+||++||||||+|++|++|
T Consensus         3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lP   82 (162)
T COG0041           3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLP   82 (162)
T ss_pred             ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCC
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          133 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       133 VIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      |||||+.+..++|+| |+|++|||+|+||+||+|++++|||++|+|||++.|+.+++||++||++
T Consensus        83 ViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~  147 (162)
T COG0041          83 VIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREA  147 (162)
T ss_pred             eEeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999974

>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE

Probab=100.00  E-value=6.4e-58  Score=372.53  Aligned_cols=144  Identities=40%  Similarity=0.633  Sum_probs=128.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  132 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P  132 (196)
                      |+|+|||||+||+++++|++++|++||++||++|+|+||+|+++.+|++++|+++++|||++||++||||||+||+|++|
T Consensus         1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~P   80 (150)
T PF00731_consen    1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLP   80 (150)
T ss_dssp             -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          133 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       133 VIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      |||||++++++.|+| |||++|||+|+||+||+|||++|||++|+|||+++|+++|+||++||++
T Consensus        81 VIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~  145 (150)
T PF00731_consen   81 VIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREK  145 (150)
T ss_dssp             EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             EEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999974

PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=100.00  E-value=8.4e-51  Score=386.28  Aligned_cols=148  Identities=45%  Similarity=0.738  Sum_probs=143.9

Q ss_pred             cCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        49 ~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      +..+++|+|||||+||+++|+++.++|++|||+|+++|+||||+|+++.+|++++++++++||||+|||+||||||+||+
T Consensus       407 ~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~  486 (577)
T PLN02948        407 PKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASM  486 (577)
T ss_pred             CCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhc
Confidence            34467999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          129 SQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       129 t~~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      |++||||||++++.++|+| ||||+|||+|+||+||||||++|||++|+|||+++|++||+||+.||++
T Consensus       487 t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~~~~~~~~~~~~~~~  555 (577)
T PLN02948        487 TPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQED  555 (577)
T ss_pred             cCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999988999999 9999999999999999999999999999999999999999999999974

>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]

Probab=99.97  E-value=4.7e-31  Score=227.43  Aligned_cols=128  Identities=26%  Similarity=0.330  Sum_probs=114.9

Q ss_pred             cCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC----eEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh
Q 029271           49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  124 (196)
Q Consensus        49 ~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~----~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv  124 (196)
                      +...++|+|++++|||+|++||++.+++.+|+.    ||++|+++||....+.+...    ++.+++|++|||+++||++
T Consensus       114 ~~~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~----~~~~~lIVvAGMEGaLPsv  189 (254)
T COG1691         114 PKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKI----EDADVLIVVAGMEGALPSV  189 (254)
T ss_pred             cccCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHh----hCCCeEEEEcccccchHHH
Confidence            334568999999999999999999999999997    89999999999998766543    5579999999999999999


Q ss_pred             hhhccCCcEEEecCCCCC---CChhh-hhhhhcCCCCCe-eeEEecCChhhHHHHHHHHHccC
Q 029271          125 AAANSQILVIRVPLLSED---WSEDD-VINSIRMPSHVQ-VASVPRNNAKNAALYAVKVLGIA  182 (196)
Q Consensus       125 vA~~t~~PVIgvP~~~~~---~~G~D-LlS~lqmPsGvp-vatV~I~~~~nAA~~AaqILa~~  182 (196)
                      +||+++.|||++|++.++   ++|+. |++|||  ||.| +++|||||+++||.+|+||+...
T Consensus       190 vagLvD~PVIavPTsVGYG~g~gGiaaLltMLq--SCspGv~VVNIdNGfGAa~~A~~I~r~~  250 (254)
T COG1691         190 VAGLVDVPVIAVPTSVGYGAGGGGIAALLTMLQ--SCSPGVGVVNIDNGFGAAVLAVQILRRI  250 (254)
T ss_pred             HHhccCCCeEecccccccCcCCccHHHHHHHHH--hcCCCeEEEEccCchHHHHHHHHHHHHH
Confidence            999999999999999764   57899 999999  5556 89999999999999999999763

>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]

Probab=99.88  E-value=1.1e-23  Score=191.54  Aligned_cols=142  Identities=29%  Similarity=0.302  Sum_probs=137.8

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      .+.+.+.|++++|.++|...+..++.+++++|.-+.++||+|..+.+|...+.++|+.++||.||.++|+|+++++.+..
T Consensus       208 ~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~  287 (373)
T KOG2835|consen  208 IDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFER  287 (373)
T ss_pred             cchhheEEcccCCcceeeeeeEEeccccCCccceEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE  195 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~  195 (196)
                      |  |+|+....+.|.| ++|+||||.|+|++||+|++|+|||++|++||+..|+.+|.|++.|..
T Consensus       288 ~--gvp~~~~~~dg~~~~l~~V~~~~~~~~~~v~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l  350 (373)
T KOG2835|consen  288 P--GVPVVFVAVDGRDNLLSIVQMPNGVPVATVAVNNPENAALLAARILGLSNEMITGKMRSYQL  350 (373)
T ss_pred             c--CcceeeeecccccccccceeccCCccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Confidence            9  9999998999999 999999999999999999999999999999999999999999998864

>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]

Probab=99.11  E-value=2e-11  Score=111.89  Aligned_cols=107  Identities=13%  Similarity=0.014  Sum_probs=87.2

Q ss_pred             cCCccchhhhhhhhhhhhccccCCCCCccccccccccccccCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 029271            9 QLSSRKKTLMVTLQLLRCQIVYVPAACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP   88 (196)
Q Consensus         9 ~~~sgdk~l~~dkq~yr~l~~vt~~~~~~vk~v~~~~~~~~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S   88 (196)
                      -||.+|+++|+|||+|+++++||+|++..|++..+.      ...+.+...-|.+                  +.+.++|
T Consensus       215 ~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~------~msr~a~~a~~~~------------------~~~~iag  270 (373)
T KOG2835|consen  215 MWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTP------VMSRYATSAKSRG------------------VVLWIAG  270 (373)
T ss_pred             EcccCCcceeeeeeEEeccccCCccceEEEeecCch------hHhhhhhhcccCc------------------eEEEEec
Confidence            489999999999999999999999999999764422      1112222222222                  7899999


Q ss_pred             ccCCchHHHHHHHHHhhCCC-eEEEEecCCCCchhHhhhhccCCcEEEecCCC
Q 029271           89 PHQNCKEALSYALSAKERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLS  140 (196)
Q Consensus        89 aHR~p~~~~~~~~~~e~~~~-~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~  140 (196)
                      +|+.+++...+.++++..|+ .++++++|++|.|+.|.++|+ .||=.+++..
T Consensus       271 a~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v~v~~  322 (373)
T KOG2835|consen  271 AYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATVAVNN  322 (373)
T ss_pred             cCCCCCChhhHHhhccccCcceeeeecccccccccceeccCC-ccccccccCC
Confidence            99999999999999999999 799999999999999999999 5665555554

>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation

Probab=97.46  E-value=0.00075  Score=60.55  Aligned_cols=88  Identities=17%  Similarity=0.123  Sum_probs=73.8

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~~  131 (196)
                      .++.|++|+.+--...+++.+.|+..|+.+.......+-+.+.+.+.++.++..++++||++.|+|. -.+-.+|.....
T Consensus        23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~  102 (351)
T cd08170          23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGA  102 (351)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCC
Confidence            5899999876655899999999999999876555667888899999999998889999999999965 466677777789


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       103 P~iaIPTTa  111 (351)
T cd08170         103 PVVIVPTIA  111 (351)
T ss_pred             CEEEeCCcc
Confidence            999999974

Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.

>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed

Probab=97.45  E-value=0.00076  Score=60.96  Aligned_cols=86  Identities=19%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~  131 (196)
                      .++.||++..+---..+++.+.|++.| .+.+. ...+++.+.+.++.+.+...++++||++.|++ .-+++.+|-....
T Consensus        35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgi  112 (350)
T PRK00843         35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGI  112 (350)
T ss_pred             CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence            479999998887777888999999888 77665 45699999999999999888899999998874 5589999988899


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       113 p~I~IPTT~  121 (350)
T PRK00843        113 PFISVPTAA  121 (350)
T ss_pred             CEEEeCCCc
Confidence            999999964

>cd08550 GlyDH-like Glycerol_dehydrogenase-like

Probab=97.39  E-value=0.00093  Score=60.09  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=72.8

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~  131 (196)
                      .++.||+|..+-....+++.+.|++.|+.+++.+.+-.-+.+.+.+.++.+++.++++||++.|++ --.+..+|.....
T Consensus        23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~  102 (349)
T cd08550          23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDK  102 (349)
T ss_pred             CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence            478889987665577899999999989877666666677788899999999888899999999875 4577788888889


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       103 p~i~VPTta  111 (349)
T cd08550         103 PIVIVPTIA  111 (349)
T ss_pred             CEEEeCCcc
Confidence            999999964

Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.

>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner

Probab=97.23  E-value=0.0016  Score=58.49  Aligned_cols=87  Identities=15%  Similarity=0.117  Sum_probs=69.1

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEccc---CCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhc
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAAN  128 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaH---R~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~  128 (196)
                      .++.||++..+--...+++.+.|++.|+.+.+......   .+.+.+.+.++.+.. ++++||++.|++ --.+..+|..
T Consensus        24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~  102 (348)
T cd08175          24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK  102 (348)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh
Confidence            47899998755444478999999999998765443333   888888888888876 789999999985 4577888888


Q ss_pred             cCCcEEEecCCC
Q 029271          129 SQILVIRVPLLS  140 (196)
Q Consensus       129 t~~PVIgvP~~~  140 (196)
                      ...|+|.+|+..
T Consensus       103 ~~~p~i~IPTTa  114 (348)
T cd08175         103 TGIPYISVPTAP  114 (348)
T ss_pred             cCCCEEEecCcc
Confidence            899999999974

Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.

>cd08171 GlyDH-like2 Glycerol dehydrogenase-like

Probab=97.23  E-value=0.0015  Score=58.83  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=71.7

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQ  130 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~  130 (196)
                      .++.||+|..+-....+++.+.|++-|+.+.+ .....+-+.+.+.+..+.++..++++||++.|+| --++..+|....
T Consensus        23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~  102 (345)
T cd08171          23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLG  102 (345)
T ss_pred             CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence            58999999776667788899999998997653 2345677888888898888888999999999885 457778888778


Q ss_pred             CcEEEecCCC
Q 029271          131 ILVIRVPLLS  140 (196)
Q Consensus       131 ~PVIgvP~~~  140 (196)
                      .|+|.||+..
T Consensus       103 ~p~i~VPTt~  112 (345)
T cd08171         103 KPVFTFPTIA  112 (345)
T ss_pred             CCEEEecCcc
Confidence            9999999964

Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.

>PRK09423 gldA glycerol dehydrogenase; Provisional

Probab=97.22  E-value=0.0021  Score=58.26  Aligned_cols=88  Identities=16%  Similarity=0.126  Sum_probs=72.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~  131 (196)
                      .++.||++..+--...+++.+.|+..|+.+.+-....+-+.+.+.++++.+...++++||++.|+| --++..+|.....
T Consensus        30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~  109 (366)
T PRK09423         30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGV  109 (366)
T ss_pred             CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCC
Confidence            579999987665558889999999999987544456777888888999988888899999999985 5678888888899


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       110 p~i~IPTta  118 (366)
T PRK09423        110 PVVIVPTIA  118 (366)
T ss_pred             CEEEeCCcc
Confidence            999999964

>TIGR01357 aroB 3-dehydroquinate synthase

Probab=97.21  E-value=0.0027  Score=56.97  Aligned_cols=87  Identities=21%  Similarity=0.193  Sum_probs=69.0

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCCCC-chhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVEA-HLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~sa-~L~gvv  125 (196)
                      .++.|+++...--.+.+++.+.|++.|+++.+.+..   .+.+.+.+.++++.+.+.++   +++||+.|++. -+++.+
T Consensus        21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i  100 (344)
T TIGR01357        21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV  100 (344)
T ss_pred             CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHH
Confidence            579999987666568899999999999988755554   25677888888888887766   89999998854 478888


Q ss_pred             hh--ccCCcEEEecCC
Q 029271          126 AA--NSQILVIRVPLL  139 (196)
Q Consensus       126 A~--~t~~PVIgvP~~  139 (196)
                      |+  ....|+|.||+.
T Consensus       101 A~~~~~~~p~i~VPTT  116 (344)
T TIGR01357       101 AATYMRGIRFIQVPTT  116 (344)
T ss_pred             HHHHccCCCEEEecCc
Confidence            73  457899999995

This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.

>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis

Probab=97.21  E-value=0.0027  Score=57.17  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=73.0

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---cCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~Sa---HR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvv  125 (196)
                      .++.|++++...-.+.+++.+.|+..|+.+.+-+...   +++.+.+.++.+.+.+.++   +++||+.|+ ..-+++++
T Consensus        25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v  104 (345)
T cd08195          25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFV  104 (345)
T ss_pred             CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHH
Confidence            4799999887766899999999999999887666553   8888999999999988777   899999888 56688888


Q ss_pred             hh--ccCCcEEEecCC
Q 029271          126 AA--NSQILVIRVPLL  139 (196)
Q Consensus       126 A~--~t~~PVIgvP~~  139 (196)
                      |+  ....|+|.||+.
T Consensus       105 A~~~~rgip~i~VPTT  120 (345)
T cd08195         105 AATYMRGIDFIQIPTT  120 (345)
T ss_pred             HHHHhcCCCeEEcchh
Confidence            84  567899999996

Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol

>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like

Probab=97.18  E-value=0.002  Score=58.13  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhcc
Q 029271           53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANS  129 (196)
Q Consensus        53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t  129 (196)
                      .+|.|++|..+-. ...+++.+.|+.-|+.+.+. -...|.+.+.+.+.++.+...++++||++.|++. -++-.+|...
T Consensus        24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~  103 (370)
T cd08551          24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA  103 (370)
T ss_pred             CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            5899999877655 78889999999988876532 2447899999999999998889999999999754 4555666544


Q ss_pred             ------------------CCcEEEecCCC
Q 029271          130 ------------------QILVIRVPLLS  140 (196)
Q Consensus       130 ------------------~~PVIgvP~~~  140 (196)
                                        ..|+|.||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~p~i~VPTt~  132 (370)
T cd08551         104 TNPGDIWDYEGGKPVIKPALPLIAIPTTA  132 (370)
T ss_pred             hCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence                              78999999975

Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.

>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme

Probab=97.08  E-value=0.0044  Score=55.56  Aligned_cols=86  Identities=21%  Similarity=0.183  Sum_probs=71.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t~~  131 (196)
                      .++.|+++...-....+++.+.|++.| .+.+.+. .+-+.+.+.++.+.+.+.++++||++.|+ ..-++..+|-....
T Consensus        26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~  103 (339)
T cd08173          26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVIV-EDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGI  103 (339)
T ss_pred             CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEEe-CCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence            478999988776678899999999988 7766543 56678888899999888889999999887 55688888888889


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       104 p~i~iPTT~  112 (339)
T cd08173         104 PFISVPTAA  112 (339)
T ss_pred             CEEEecCcc
Confidence            999999974

Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph

>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins

Probab=97.06  E-value=0.0034  Score=56.37  Aligned_cols=87  Identities=9%  Similarity=-0.037  Sum_probs=68.9

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc--ccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhcc
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANS  129 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S--aHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t  129 (196)
                      .+|.||+++..-.-..+++.+.|++-|+.+++....  .+.+.+.+.+.++.+.. +++++|++.|+ ..-+++++|-..
T Consensus        25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~~~  103 (332)
T cd08549          25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSFKV  103 (332)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHHHc
Confidence            479999997776556799999999989877653222  33466778888888877 78999999887 566888999888


Q ss_pred             CCcEEEecCCC
Q 029271          130 QILVIRVPLLS  140 (196)
Q Consensus       130 ~~PVIgvP~~~  140 (196)
                      ..|+|.||+..
T Consensus       104 gip~I~VPTT~  114 (332)
T cd08549         104 GKPFISVPTAP  114 (332)
T ss_pred             CCCEEEeCCCc
Confidence            99999999964

Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.

>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)

Probab=97.02  E-value=0.0046  Score=54.77  Aligned_cols=87  Identities=16%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhcc-
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANS-  129 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t-  129 (196)
                      .++.||+|...--...+++.+.|++. +.+.+. ....+.+.+.+.+.++.+.+.++++||++.|++ .-++..+|... 
T Consensus        24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~  102 (332)
T cd07766          24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN  102 (332)
T ss_pred             CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc
Confidence            47899997765448889999999887 766543 244678889999999999888899999998874 56777888876 


Q ss_pred             -CCcEEEecCCC
Q 029271          130 -QILVIRVPLLS  140 (196)
Q Consensus       130 -~~PVIgvP~~~  140 (196)
                       ..|+|.||+..
T Consensus       103 ~~~p~i~iPTt~  114 (332)
T cd07766         103 RGLPIIIVPTTA  114 (332)
T ss_pred             CCCCEEEEeCCC
Confidence             89999999975

Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc

>PRK00002 aroB 3-dehydroquinate synthase; Reviewed

Probab=96.94  E-value=0.0067  Score=54.95  Aligned_cols=87  Identities=22%  Similarity=0.268  Sum_probs=71.1

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvv  125 (196)
                      .++.|++++...-...+++.+.|+..|+.+.+.+.+   .+++.+.+.++++.+.+.++   +++|++.|+ ..-+++.+
T Consensus        32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i  111 (358)
T PRK00002         32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFA  111 (358)
T ss_pred             CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHH
Confidence            589999988776679999999999999988765433   36778889999988887776   899999887 45678888


Q ss_pred             hh--ccCCcEEEecCC
Q 029271          126 AA--NSQILVIRVPLL  139 (196)
Q Consensus       126 A~--~t~~PVIgvP~~  139 (196)
                      |+  ....|+|.||+.
T Consensus       112 A~~~~~gip~i~IPTT  127 (358)
T PRK00002        112 AATYMRGIRFIQVPTT  127 (358)
T ss_pred             HHHhcCCCCEEEcCch
Confidence            84  567899999996

>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like

Probab=96.92  E-value=0.0059  Score=55.55  Aligned_cols=88  Identities=14%  Similarity=0.143  Sum_probs=68.1

Q ss_pred             CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH-hhhh-
Q 029271           53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA-  127 (196)
Q Consensus        53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g-vvA~-  127 (196)
                      .+|.||+|..+  .....+++.+.|++.|+.+.+. -...+-+.+.+.+.++.+++.++++||++.|+|.-=.+ .++. 
T Consensus        26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~  105 (380)
T cd08185          26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM  105 (380)
T ss_pred             CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence            58999999876  5678899999999999987642 23468888999999999988899999999998753111 2222 


Q ss_pred             ----------------------ccCCcEEEecCCC
Q 029271          128 ----------------------NSQILVIRVPLLS  140 (196)
Q Consensus       128 ----------------------~t~~PVIgvP~~~  140 (196)
                                            ...+|+|.||+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta  140 (380)
T cd08185         106 AANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA  140 (380)
T ss_pred             hhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence                                  1358999999964

Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.

>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS)

Probab=96.85  E-value=0.0084  Score=54.71  Aligned_cols=87  Identities=15%  Similarity=0.224  Sum_probs=72.2

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC----eEEEEecCC-CCchhHh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI----KIIIVGDGV-EAHLSGV  124 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~----~V~IavAG~-sa~L~gv  124 (196)
                      .++.||++....--+.+++.+.|+..|++++.-+..   .+++.+.+.++.+.+.+.++    +++|++.|+ ..-++++
T Consensus        27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~  106 (354)
T cd08199          27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGL  106 (354)
T ss_pred             CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHH
Confidence            579999987665557789999999999988765444   58899999999998888787    999998885 7789999


Q ss_pred             hhh--ccCCcEEEecCC
Q 029271          125 AAA--NSQILVIRVPLL  139 (196)
Q Consensus       125 vA~--~t~~PVIgvP~~  139 (196)
                      +|+  ....|.|.||+.
T Consensus       107 ~A~~~~rg~p~i~VPTT  123 (354)
T cd08199         107 AASLYRRGTPYVRIPTT  123 (354)
T ss_pred             HHHHhcCCCCEEEEcCc
Confidence            994  678999999994

2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s

>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics

Probab=96.83  E-value=0.0094  Score=54.45  Aligned_cols=87  Identities=18%  Similarity=0.249  Sum_probs=70.5

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCCe---EEEEecCC-CCchhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~~---V~IavAG~-sa~L~gvv  125 (196)
                      .++.|++++.-.-...+++.+.|+..|+++++.+.+   .+++.+.+.++.+.+.+.+++   +|||+.|+ ..-+++++
T Consensus        24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~  103 (355)
T cd08197          24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLL  103 (355)
T ss_pred             CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence            478999987655458889999999999988766643   477888999999999888887   99988887 56688888


Q ss_pred             hhc--cCCcEEEecCC
Q 029271          126 AAN--SQILVIRVPLL  139 (196)
Q Consensus       126 A~~--t~~PVIgvP~~  139 (196)
                      |+.  ...|+|.+|+.
T Consensus       104 A~~~~rgip~I~IPTT  119 (355)
T cd08197         104 AALLFRGIRLVHIPTT  119 (355)
T ss_pred             HHHhccCCCEEEecCc
Confidence            864  57899999995

2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.

>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like

Probab=96.80  E-value=0.0077  Score=54.79  Aligned_cols=86  Identities=13%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc---
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN---  128 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~---  128 (196)
                      .++.|++|..+=  ..+++...|++.|+.+.+.-....-+.+.+.+.++.+++.++++||++.|+|.. .+-.+|..   
T Consensus        23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~  100 (374)
T cd08183          23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPN  100 (374)
T ss_pred             CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcC
Confidence            589999987553  888999999999998765423346666788889999988899999999999653 33344321   


Q ss_pred             -------------------cCCcEEEecCCC
Q 029271          129 -------------------SQILVIRVPLLS  140 (196)
Q Consensus       129 -------------------t~~PVIgvP~~~  140 (196)
                                         ..+|+|.||+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta  131 (374)
T cd08183         101 PGSVLDYLEGVGRGLPLDGPPLPFIAIPTTA  131 (374)
T ss_pred             CCCHHHHHhccCccccCCCCCCCEEEecCCC
Confidence                               358999999974

Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.

>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP)

Probab=96.77  E-value=0.0085  Score=54.20  Aligned_cols=86  Identities=13%  Similarity=0.132  Sum_probs=65.8

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhc--
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAAN--  128 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~--  128 (196)
                      .++.||+|+.+-  ..+++.+.|++.|+.+.+. -...|.+.+.+.+.++.+++.++++||++.|+|. -++-.+|..  
T Consensus        24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~  101 (367)
T cd08182          24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLG  101 (367)
T ss_pred             CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHh
Confidence            479999987664  6788889999999765432 2446888899999999998889999999999854 344454432  


Q ss_pred             --------------------cCCcEEEecCCC
Q 029271          129 --------------------SQILVIRVPLLS  140 (196)
Q Consensus       129 --------------------t~~PVIgvP~~~  140 (196)
                                          ...|+|.||+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta  133 (367)
T cd08182         102 APREALEDLRIRNKERENRERALPLIAIPTTA  133 (367)
T ss_pred             CCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence                                357999999975

Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.

>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria

Probab=96.73  E-value=0.0068  Score=55.20  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-----chhHhh
Q 029271           53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-----HLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-----~L~gvv  125 (196)
                      .++.|++|..... ...+++.+.|+..|+.+.+- =...|-+.+.+.+.++.++..++++||++.|+|.     .++-+.
T Consensus        29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~  108 (377)
T cd08176          29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVA  108 (377)
T ss_pred             CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHH
Confidence            4788998865544 68899999999999976542 1335888899999999998889999999999876     222110


Q ss_pred             --------------hhccCCcEEEecCCC
Q 029271          126 --------------AANSQILVIRVPLLS  140 (196)
Q Consensus       126 --------------A~~t~~PVIgvP~~~  140 (196)
                                    .-...+|+|.||+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~P~i~IPTta  137 (377)
T cd08176         109 TNGGDIRDYEGVAKSKKPAVPIVAINTTA  137 (377)
T ss_pred             hCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence                          013568999999964

Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to

>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like

Probab=96.72  E-value=0.015  Score=51.88  Aligned_cols=82  Identities=12%  Similarity=0.024  Sum_probs=59.2

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC-CCeEEEEecCC-CCchhHhhhhccC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGV-EAHLSGVAAANSQ  130 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~-~~~V~IavAG~-sa~L~gvvA~~t~  130 (196)
                      .++.||+|...    .+++.+.|+..++ .++.+.. .++.+...++.+.++.. +.++||++.|+ ..-+++++|....
T Consensus        26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~~~   99 (331)
T cd08174          26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVE-EVSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFLRG   99 (331)
T ss_pred             CceEEEECCcH----HHHHHHHHHhccC-ceEEEec-CCCccCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhhcC
Confidence            47999998766    7788888887777 3333332 34444445544444443 47999988886 6679999999999


Q ss_pred             CcEEEecCCC
Q 029271          131 ILVIRVPLLS  140 (196)
Q Consensus       131 ~PVIgvP~~~  140 (196)
                      .|+|.||+..
T Consensus       100 ~p~i~vPTt~  109 (331)
T cd08174         100 IPLSVPTTNL  109 (331)
T ss_pred             CCEEEecCcc
Confidence            9999999965

Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.

>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor

Probab=96.66  E-value=0.0049  Score=56.03  Aligned_cols=88  Identities=13%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc-
Q 029271           53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN-  128 (196)
Q Consensus        53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~-  128 (196)
                      .++.|++|+.- +....+++...|++.|+.+.+. -.-.|.+.+.+.+.++.+++.++++||++.|+|.. .+..+|.. 
T Consensus        27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~  106 (376)
T cd08193          27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLA  106 (376)
T ss_pred             CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            47888887642 5567899999999999876532 23378889999999999998899999999999764 34455543 


Q ss_pred             -----------------cCCcEEEecCCC
Q 029271          129 -----------------SQILVIRVPLLS  140 (196)
Q Consensus       129 -----------------t~~PVIgvP~~~  140 (196)
                                       ...|+|.||+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~p~i~IPTTa  135 (376)
T cd08193         107 GSDQPLADMYGVDLVAGPRLPLILVPTTA  135 (376)
T ss_pred             HCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence                             368999999975

5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.

>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like

Probab=96.61  E-value=0.012  Score=53.50  Aligned_cols=88  Identities=17%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh--
Q 029271           53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA--  127 (196)
Q Consensus        53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~--  127 (196)
                      .++.||+|..+- ....+++.+.|++.|+.+.+- -...|-+.+.+.+.++.++..++++||++.|+|.. .+-++|.  
T Consensus        24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~  103 (375)
T cd08194          24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLA  103 (375)
T ss_pred             CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            479999976554 347899999999999976542 34578888899999999988899999999998653 3334442  


Q ss_pred             ----------------ccCCcEEEecCCC
Q 029271          128 ----------------NSQILVIRVPLLS  140 (196)
Q Consensus       128 ----------------~t~~PVIgvP~~~  140 (196)
                                      ...+|+|.||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~P~i~IPTta  132 (375)
T cd08194         104 TNGGSIRDYKGPRIVDKPGLPLIAIPTTA  132 (375)
T ss_pred             hCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence                            2457999999964

Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.

>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process

Probab=96.54  E-value=0.013  Score=53.43  Aligned_cols=88  Identities=15%  Similarity=0.062  Sum_probs=66.1

Q ss_pred             CeEEEEEcCCCC--HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch-hHhhhh-
Q 029271           53 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAAA-  127 (196)
Q Consensus        53 ~~V~IimGS~SD--~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L-~gvvA~-  127 (196)
                      .++.||+|..+-  ....+++.+.|+..|+.+.+. -...|-+.+.+.+.++.++..++++||++.|+|..= +-.++. 
T Consensus        29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~  108 (382)
T cd08187          29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAG  108 (382)
T ss_pred             CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhH
Confidence            489999986554  356789999999999875532 234677888999999999998999999999987642 224433 


Q ss_pred             -----------------ccCCcEEEecCCC
Q 029271          128 -----------------NSQILVIRVPLLS  140 (196)
Q Consensus       128 -----------------~t~~PVIgvP~~~  140 (196)
                                       ....|+|.||+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa  138 (382)
T cd08187         109 APYDGDVWDFFTGKAKIEKALPVGTVLTLA  138 (382)
T ss_pred             hhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence                             2358999999964

The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.

>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase

Probab=96.54  E-value=0.01  Score=54.24  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=66.2

Q ss_pred             CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc
Q 029271           53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN  128 (196)
Q Consensus        53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~  128 (196)
                      .++.|++|..+  -....+++.+.|++.|+.+.+-- ...+.+.+.+.+.++.+++.++++||++.|+|.. .+..+|..
T Consensus        27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~  106 (383)
T cd08186          27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL  106 (383)
T ss_pred             CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence            47999998654  25567899999999999765431 3367788999999999999899999999998643 33344331


Q ss_pred             -------------------cCCcEEEecCCC
Q 029271          129 -------------------SQILVIRVPLLS  140 (196)
Q Consensus       129 -------------------t~~PVIgvP~~~  140 (196)
                                         ...|+|.||+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa  137 (383)
T cd08186         107 LEHPGKTARDLYEFKFTPEKALPLIAINLTH  137 (383)
T ss_pred             HhCCCCcHHHHhCCCcccCCCCCEEEEeCCC
Confidence                               257999999964

Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.

>TIGR02638 lactal_redase lactaldehyde reductase

Probab=96.49  E-value=0.014  Score=53.31  Aligned_cols=89  Identities=16%  Similarity=0.231  Sum_probs=66.0

Q ss_pred             CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhh---
Q 029271           53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA---  126 (196)
Q Consensus        53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA---  126 (196)
                      .++.|++|.... ....+++.+.|++.|+.+.+. -...+.+.+.+.+.++.+...++++||++.|+|.. .+=.+|   
T Consensus        30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~  109 (379)
T TIGR02638        30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIS  109 (379)
T ss_pred             CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence            489999976533 347889999999999977642 12368888999999999988899999999998754 331221   


Q ss_pred             h-----------------ccCCcEEEecCCCC
Q 029271          127 A-----------------NSQILVIRVPLLSE  141 (196)
Q Consensus       127 ~-----------------~t~~PVIgvP~~~~  141 (196)
                      .                 ....|+|.||+..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag  141 (379)
T TIGR02638       110 NNPEFADVRSLEGVAPTKKPGVPIIAIPTTAG  141 (379)
T ss_pred             hCCCCCCHHHhhCCCccCCCCCCEEEECCCCc
Confidence            1                 13479999999753

This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.

>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like

Probab=96.46  E-value=0.01  Score=53.96  Aligned_cols=88  Identities=18%  Similarity=0.242  Sum_probs=65.0

Q ss_pred             CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc-
Q 029271           53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN-  128 (196)
Q Consensus        53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~-  128 (196)
                      .+|.|++|.... ....+++.+.|+..|+.+.+- -.-.|.+.+.+.+.++.+.+.++++||++.|+|.. .+-.+|.. 
T Consensus        27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~  106 (374)
T cd08189          27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARA  106 (374)
T ss_pred             CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHH
Confidence            489999986543 346789999999999976532 22367888889999999988899999999998653 33344332 


Q ss_pred             --c----------------CCcEEEecCCC
Q 029271          129 --S----------------QILVIRVPLLS  140 (196)
Q Consensus       129 --t----------------~~PVIgvP~~~  140 (196)
                        .                ..|+|.||+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTta  136 (374)
T cd08189         107 ANPKKSLRKLTGLLKVKKPLPPLFAIPTTA  136 (374)
T ss_pred             hCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence              1                26999999975

Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.

>PLN02834 3-dehydroquinate synthase

Probab=96.41  E-value=0.025  Score=53.24  Aligned_cols=87  Identities=16%  Similarity=0.226  Sum_probs=69.7

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE--EEEc---ccCCchHHHHHHHHHhhCCCe---EEEEecCC-CCchhH
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSG  123 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev--~V~S---aHR~p~~~~~~~~~~e~~~~~---V~IavAG~-sa~L~g  123 (196)
                      .++.||++....--+.+++.+.|+.-|+++.+  .+..   .+++.+.+.++.+.+...+++   +|||+.|+ ..-+++
T Consensus       101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak  180 (433)
T PLN02834        101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCG  180 (433)
T ss_pred             CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHH
Confidence            57999998776666899999999999987665  3433   468888888888888887876   99999887 567888


Q ss_pred             hhhh--ccCCcEEEecCC
Q 029271          124 VAAA--NSQILVIRVPLL  139 (196)
Q Consensus       124 vvA~--~t~~PVIgvP~~  139 (196)
                      ++|+  .-..|+|.||+.
T Consensus       181 ~~A~~y~rgiplI~VPTT  198 (433)
T PLN02834        181 FAAASYQRGVNFVQIPTT  198 (433)
T ss_pred             HHHHHhcCCCCEEEECCc
Confidence            8875  557899999995

>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway

Probab=96.41  E-value=0.014  Score=52.82  Aligned_cols=88  Identities=18%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc-
Q 029271           53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN-  128 (196)
Q Consensus        53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~-  128 (196)
                      .++.|++|... +....+++.+.|++-|+++.+- -...|-+.+.+.+.++.++..++++||++.|+|.. ++-.+|.. 
T Consensus        25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~  104 (370)
T cd08192          25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMA  104 (370)
T ss_pred             CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            47888887543 3457899999999999976542 23478888899999999988899999999998643 33344332 


Q ss_pred             ---------------------cCCcEEEecCCC
Q 029271          129 ---------------------SQILVIRVPLLS  140 (196)
Q Consensus       129 ---------------------t~~PVIgvP~~~  140 (196)
                                           ...|+|.||+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta  137 (370)
T cd08192         105 GHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTA  137 (370)
T ss_pred             hCCCCHHHHhcccccccccCCCCCCEEEecCCC
Confidence                                 248999999975

NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm

>cd08172 GlyDH-like1 Glycerol dehydrogenases-like

Probab=96.35  E-value=0.009  Score=53.72  Aligned_cols=86  Identities=19%  Similarity=0.024  Sum_probs=65.4

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~  131 (196)
                      .++.||++..+=....++..+.|+..++.+.+ .... .+.+.+.+.++.+.+.++++||++.|++ --++..+|.....
T Consensus        24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~-~~~~-p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~  101 (347)
T cd08172          24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFVLR-YDGE-CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGV  101 (347)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHhcCeEEEEE-eCCC-CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCC
Confidence            47899998665445666666666655665431 1223 7888899999999988999999999874 5688888888899


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       102 p~i~VPTT~  110 (347)
T cd08172         102 PVITVPTLA  110 (347)
T ss_pred             CEEEecCcc
Confidence            999999974

Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.

>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD)

Probab=96.30  E-value=0.023  Score=51.49  Aligned_cols=88  Identities=16%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             CeEEEEEcCCC-C-HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh-
Q 029271           53 PIVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-  127 (196)
Q Consensus        53 ~~V~IimGS~S-D-~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~-  127 (196)
                      .++.|++|..+ . ....+++.+.|++.|+.+.+. -...+-+.+.+.+.++.+++.++++||++.|+|.. .+-.++. 
T Consensus        26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~  105 (357)
T cd08181          26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVL  105 (357)
T ss_pred             CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence            58999998765 3 346788999999999976542 13368888999999999999999999999999764 2323332 


Q ss_pred             ----------------ccCCcEEEecCCC
Q 029271          128 ----------------NSQILVIRVPLLS  140 (196)
Q Consensus       128 ----------------~t~~PVIgvP~~~  140 (196)
                                      ....|+|.||+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~P~i~VPTta  134 (357)
T cd08181         106 IKNPDLKVELYFRSKYLKALPVVAIPTTA  134 (357)
T ss_pred             HhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence                            2358999999975

1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.

>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD)

Probab=96.28  E-value=0.019  Score=52.72  Aligned_cols=67  Identities=15%  Similarity=0.050  Sum_probs=53.2

Q ss_pred             CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 029271           53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA  119 (196)
Q Consensus        53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa  119 (196)
                      .+|.||++.. .+....+++.+.|++.|+.+.+- -...+.+.+.+.+.++.+.+.++++||++.|+|.
T Consensus        22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~   90 (398)
T cd08178          22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP   90 (398)
T ss_pred             CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence            4788998754 34458889999999999876532 2346788889999999999889999999999864

Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi

>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C

Probab=96.24  E-value=0.005  Score=54.10  Aligned_cols=136  Identities=15%  Similarity=0.136  Sum_probs=85.5

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhccC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQ  130 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t~  130 (196)
                      .++.||++...---..+++.+.|+..|+++.+-. ..-+-+-+.+.++.++++..+++++|++.|+ .+-++=++|.+..
T Consensus        20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~   99 (250)
T PF13685_consen   20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELG   99 (250)
T ss_dssp             SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcC
Confidence            4899999998877778899999999999876322 1122345556677777766678888887665 7889999999999


Q ss_pred             CcEEEecCCCCCCChhh-hhhhhcC---------CCCCeeeEEecC-----------ChhhHHHHHHHHHccCCHHHHHH
Q 029271          131 ILVIRVPLLSEDWSEDD-VINSIRM---------PSHVQVASVPRN-----------NAKNAALYAVKVLGIADEDLLER  189 (196)
Q Consensus       131 ~PVIgvP~~~~~~~G~D-LlS~lqm---------PsGvpvatV~I~-----------~~~nAA~~AaqILa~~d~~l~~k  189 (196)
                      +|.|.||+.- +.+|+. -.+++..         |.-.|.+++ +|           ..-+.+=+.+++-++.||.|..+
T Consensus       100 ~p~isVPTa~-S~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIi-aD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~  177 (250)
T PF13685_consen  100 IPFISVPTAA-SHDGFASPVASLTVDDGFKVSYGPAKAPIAII-ADTDIIANAPRRLIAAGFGDLISKYTALADWKLAHE  177 (250)
T ss_dssp             --EEEEES---SSGGGTSSEEEEEET-TEEEEE-E----SEEE-EEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEecccc-ccccccCCCeeEEecCCCceeecCCCCCeEEE-EeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence            9999999975 355543 2222221         444555655 23           23455566788888889888765


Q ss_pred             H
Q 029271          190 I  190 (196)
Q Consensus       190 l  190 (196)
                      +
T Consensus       178 ~  178 (250)
T PF13685_consen  178 Y  178 (250)
T ss_dssp             T
T ss_pred             h
Confidence            4

>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1

Probab=96.20  E-value=0.013  Score=52.92  Aligned_cols=87  Identities=16%  Similarity=0.192  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCHH--HHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc----hhHhhh
Q 029271           54 IVGIIMESDLDLP--VMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAA  126 (196)
Q Consensus        54 ~V~IimGS~SD~~--~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~----L~gvvA  126 (196)
                      +|.||++. +-..  ..+++.+.|++-|+.+.+-- ...|-+.+.+.+.++.+++.++++||++.|+|.-    .-.+..
T Consensus        23 r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~  101 (366)
T PF00465_consen   23 RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLL  101 (366)
T ss_dssp             EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHH
T ss_pred             CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhc
Confidence            99999987 3322  68999999999999886543 5799999999999999999999999999998642    222222


Q ss_pred             hcc----------------CCcEEEecCCCC
Q 029271          127 ANS----------------QILVIRVPLLSE  141 (196)
Q Consensus       127 ~~t----------------~~PVIgvP~~~~  141 (196)
                      .+.                .+|+|.||+..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g  132 (366)
T PF00465_consen  102 ANPGDLRDLLGKGPPPTKPALPLIAIPTTAG  132 (366)
T ss_dssp             TSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred             cCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence            221                289999999754

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....

>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes

Probab=96.19  E-value=0.012  Score=52.87  Aligned_cols=87  Identities=16%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~~  131 (196)
                      .++.|++|...--...+++.+.|++.++.. +.-...|-+.+.+.+.++.+.+.++++||++.|++. -++-++|.....
T Consensus        24 ~~~livt~~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~  102 (337)
T cd08177          24 SRALVLTTPSLATKLAERVASALGDRVAGT-FDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGL  102 (337)
T ss_pred             CeEEEEcChHHHHHHHHHHHHHhccCCcEE-eCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcC
Confidence            478999987554447888888888764321 122235777888889998888888999999999854 577788877799


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       103 p~i~IPTta  111 (337)
T cd08177         103 PIIAIPTTL  111 (337)
T ss_pred             CEEEEcCCc
Confidence            999999964

Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-

>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate

Probab=96.13  E-value=0.033  Score=50.97  Aligned_cols=87  Identities=24%  Similarity=0.287  Sum_probs=62.6

Q ss_pred             CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEE--EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhc
Q 029271           53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK--ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN  128 (196)
Q Consensus        53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~--V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~  128 (196)
                      .+|.||+|...- ....+++.+.|++-|+.+.+.  +. .+-..+.+.+.++.+.+.++++||++.|+|.. .+-.+|..
T Consensus        23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~-~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~  101 (386)
T cd08191          23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVL-PDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLL  101 (386)
T ss_pred             CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCC-CCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence            479999976543 478899999999999976542  11 23455667777777777889999999998653 33344432


Q ss_pred             c------------------CCcEEEecCCC
Q 029271          129 S------------------QILVIRVPLLS  140 (196)
Q Consensus       129 t------------------~~PVIgvP~~~  140 (196)
                      .                  ..|+|.||+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTta  131 (386)
T cd08191         102 LAHGGDVRDYYGEFKVPGPVLPLIAVPTTA  131 (386)
T ss_pred             HhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence            2                  68999999974

6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.

>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase

Probab=96.13  E-value=0.043  Score=49.77  Aligned_cols=85  Identities=20%  Similarity=0.158  Sum_probs=67.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHH-hCCCeEEEEEc---ccCCchHHHHHHHHHhhCC---CeEEEEecCC-CCchhHh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGV-EAHLSGV  124 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~-~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~---~~V~IavAG~-sa~L~gv  124 (196)
                      .++.|+++..-.-.+.+++.+.|+. +++.+  .+.+   .+++.+.+.++.+.+...+   .+++|++.|+ ..-++++
T Consensus        24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~~--~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~  101 (344)
T cd08169          24 DQYFFISDSGVADLIAHYIAEYLSKILPVHI--LVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGF  101 (344)
T ss_pred             CeEEEEECccHHHHHHHHHHHHHHhhcCceE--EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHH
Confidence            4799999887766799999999987 66654  3444   4778888888888887655   6899999887 4568889


Q ss_pred             hhh--ccCCcEEEecCC
Q 029271          125 AAA--NSQILVIRVPLL  139 (196)
Q Consensus       125 vA~--~t~~PVIgvP~~  139 (196)
                      +|+  +-..|.|.||+.
T Consensus       102 vA~~~~rgip~i~VPTT  118 (344)
T cd08169         102 VASTLFRGIAFIRVPTT  118 (344)
T ss_pred             HHHHhccCCcEEEecCC
Confidence            987  457899999995

Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne

>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria

Probab=96.08  E-value=0.04  Score=50.19  Aligned_cols=88  Identities=15%  Similarity=0.105  Sum_probs=65.4

Q ss_pred             CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH-hhhh-
Q 029271           53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA-  127 (196)
Q Consensus        53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g-vvA~-  127 (196)
                      .++.||+|..+  .....+++.+.|++.|+++.+. =...|-+.+.+.+.++.+.+.++++||++.|+|.-=.+ .+|. 
T Consensus        24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~  103 (375)
T cd08179          24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIF  103 (375)
T ss_pred             CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHH
Confidence            47899998654  3577799999999999976532 12368888999999999999899999999999753111 2221 


Q ss_pred             --------------------ccCCcEEEecCCC
Q 029271          128 --------------------NSQILVIRVPLLS  140 (196)
Q Consensus       128 --------------------~t~~PVIgvP~~~  140 (196)
                                          ....|+|.||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTta  136 (375)
T cd08179         104 YEYPELTFEDIVKPFTLPELRNKARFCAIPSTS  136 (375)
T ss_pred             HhCCCcCHHHHhccccccccCCCCCEEEeCCCC
Confidence                                1246999999964

NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.

>PRK15454 ethanol dehydrogenase EutG; Provisional

Probab=96.06  E-value=0.024  Score=52.36  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=63.2

Q ss_pred             CeEEEEEcC-CCCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc----hhHhhh
Q 029271           53 PIVGIIMES-DLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAA  126 (196)
Q Consensus        53 ~~V~IimGS-~SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~----L~gvvA  126 (196)
                      .++.|++|. -......+++.+.|++-|+.+.+. -....-+.+.+.+.++.+++.++++||++.|+|.-    .-.++.
T Consensus        50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~  129 (395)
T PRK15454         50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLV  129 (395)
T ss_pred             CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence            456666653 234567899999999999987643 23456666889999999999999999999999753    112222


Q ss_pred             hc---------------cCCcEEEecCCC
Q 029271          127 AN---------------SQILVIRVPLLS  140 (196)
Q Consensus       127 ~~---------------t~~PVIgvP~~~  140 (196)
                      .+               ..+|+|.||+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~P~iaIPTta  158 (395)
T PRK15454        130 TNPDSTLAEMSETSVLQPRLPLIAIPTTA  158 (395)
T ss_pred             hCCCccHHHHhcccccCCCCCEEEECCCC
Confidence            11               357999999975

>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like

Probab=95.96  E-value=0.04  Score=50.27  Aligned_cols=88  Identities=19%  Similarity=0.257  Sum_probs=62.8

Q ss_pred             CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh----Hhhh
Q 029271           53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAA  126 (196)
Q Consensus        53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~----gvvA  126 (196)
                      .++.|++|... +....+++.+.|++.|+.+.+.- ...+-+.+.+.+.++.+...++++||++.|+|..=.    ++++
T Consensus        29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~  108 (377)
T cd08188          29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVA  108 (377)
T ss_pred             CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            58999998654 33468899999999999775421 224666777888888888888999999999864321    2222


Q ss_pred             hc---------------cCCcEEEecCCC
Q 029271          127 AN---------------SQILVIRVPLLS  140 (196)
Q Consensus       127 ~~---------------t~~PVIgvP~~~  140 (196)
                      .+               ...|+|.||+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~p~i~IPTT~  137 (377)
T cd08188         109 SNGGHILDFEGVDKITRPLPPLICIPTTA  137 (377)
T ss_pred             HCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence            22               147999999975

Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.

>PRK10624 L-1,2-propanediol oxidoreductase; Provisional

Probab=95.93  E-value=0.042  Score=50.22  Aligned_cols=88  Identities=17%  Similarity=0.219  Sum_probs=64.4

Q ss_pred             CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhh---
Q 029271           53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA---  126 (196)
Q Consensus        53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA---  126 (196)
                      .++.|++|.. .+.+..+++.+.|++.|+.+.+. =...+.+.+.+.+.++.+.+.++++||++.|+|.. ++-.++   
T Consensus        31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~  110 (382)
T PRK10624         31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIIS  110 (382)
T ss_pred             CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence            4788998754 44568999999999999976542 12256777888989888888899999999998643 221222   


Q ss_pred             hc-----------------cCCcEEEecCCC
Q 029271          127 AN-----------------SQILVIRVPLLS  140 (196)
Q Consensus       127 ~~-----------------t~~PVIgvP~~~  140 (196)
                      .+                 ...|+|.||+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa  141 (382)
T PRK10624        111 NNPEFADVRSLEGVAPTKKPSVPIIAIPTTA  141 (382)
T ss_pred             HCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence            11                 247999999975

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=95.90  E-value=0.082  Score=50.89  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---cCCchHHHHHHHHHhhC---CCeEEEEecCC-CCchhHhhh
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKER---GIKIIIVGDGV-EAHLSGVAA  126 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~Sa---HR~p~~~~~~~~~~e~~---~~~V~IavAG~-sa~L~gvvA  126 (196)
                      ++.||+..... .+.+++.+.|+..|+.+...+...   +++.+.+.++.+.+.+.   ..+++||+.|+ ..-+++++|
T Consensus       211 k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA  289 (542)
T PRK14021        211 KVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVA  289 (542)
T ss_pred             eEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHH
Confidence            56677755443 477889999999898654444432   34566666666666555   36899999886 677999999


Q ss_pred             h--ccCCcEEEecCC
Q 029271          127 A--NSQILVIRVPLL  139 (196)
Q Consensus       127 ~--~t~~PVIgvP~~  139 (196)
                      +  .--.|+|.||+.
T Consensus       290 ~~y~rGi~~i~vPTT  304 (542)
T PRK14021        290 ATWMRGIRYVNCPTS  304 (542)
T ss_pred             HHHHcCCCEEEeCCh
Confidence            7  689999999994

>PRK09860 putative alcohol dehydrogenase; Provisional

Probab=95.88  E-value=0.042  Score=50.42  Aligned_cols=88  Identities=17%  Similarity=0.119  Sum_probs=64.8

Q ss_pred             CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH-hhh---
Q 029271           53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAA---  126 (196)
Q Consensus        53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g-vvA---  126 (196)
                      .+|.|++|+. ......+++.+.|++.|+.+.+. =...+-+.+.+.+.++.++..++++||++.|+|.-=.. +++   
T Consensus        32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~  111 (383)
T PRK09860         32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVA  111 (383)
T ss_pred             CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH
Confidence            4788998753 35678889999999999975331 12347778999999999999999999999998753111 111   


Q ss_pred             h---------------ccCCcEEEecCCC
Q 029271          127 A---------------NSQILVIRVPLLS  140 (196)
Q Consensus       127 ~---------------~t~~PVIgvP~~~  140 (196)
                      .               ....|+|.||+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~p~iaIPTTa  140 (383)
T PRK09860        112 ANGGDIRDYEGVDRSAKPQLPMIAINTTA  140 (383)
T ss_pred             HCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence            1               2468999999965

>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism

Probab=95.86  E-value=0.051  Score=50.35  Aligned_cols=68  Identities=13%  Similarity=0.145  Sum_probs=53.7

Q ss_pred             CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271           53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH  120 (196)
Q Consensus        53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~  120 (196)
                      .+|.|++|.. ......+++.+.|++.|+.+.+. -...+-+.+.+.+.++.+.+.++++||++.|+|.-
T Consensus        24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi   93 (414)
T cd08190          24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI   93 (414)
T ss_pred             CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence            4788888754 33346799999999999987642 23368888899999999999999999999999754

Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT

>PRK06203 aroB 3-dehydroquinate synthase; Reviewed

Probab=95.77  E-value=0.085  Score=48.94  Aligned_cols=87  Identities=17%  Similarity=0.229  Sum_probs=62.1

Q ss_pred             CeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEc-------ccCC-chHHHHHHHHHhhCCCe---EEEEecCC-
Q 029271           53 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP-------PHQN-CKEALSYALSAKERGIK---IIIVGDGV-  117 (196)
Q Consensus        53 ~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~S-------aHR~-p~~~~~~~~~~e~~~~~---V~IavAG~-  117 (196)
                      .++.||+++.-.   .+..+++.+.|+.-|+++++...-       ..+. ++.+.++.+.+...+++   ++|++.|+ 
T Consensus        43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs  122 (389)
T PRK06203         43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA  122 (389)
T ss_pred             CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence            579999865443   245688888888888876532211       2344 36688888888777775   99999888 


Q ss_pred             CCchhHhhhh--ccCCcEEEecCC
Q 029271          118 EAHLSGVAAA--NSQILVIRVPLL  139 (196)
Q Consensus       118 sa~L~gvvA~--~t~~PVIgvP~~  139 (196)
                      ..-+++.+|+  +-..|.|.||+.
T Consensus       123 v~D~ak~iA~~~~rgip~I~IPTT  146 (389)
T PRK06203        123 VLDMVGYAAATAHRGVRLIRIPTT  146 (389)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcCC
Confidence            4568888886  335799999996

>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism

Probab=95.77  E-value=0.05  Score=48.65  Aligned_cols=87  Identities=16%  Similarity=0.109  Sum_probs=61.4

Q ss_pred             CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh--
Q 029271           53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA--  127 (196)
Q Consensus        53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~--  127 (196)
                      .++.|++|... +....+++.+.|+.- +.+.+ .-...+.+.+.+.+.++.+.+.++++||++.|+|.. .+..++.  
T Consensus        23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~  101 (332)
T cd08180          23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFA  101 (332)
T ss_pred             CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHH
Confidence            47888887543 334677888888765 55432 122467788888899998888899999999998765 3433332  


Q ss_pred             -c----cCCcEEEecCCC
Q 029271          128 -N----SQILVIRVPLLS  140 (196)
Q Consensus       128 -~----t~~PVIgvP~~~  140 (196)
                       +    ...|+|.||+..
T Consensus       102 ~~~~~~~~~p~i~VPTta  119 (332)
T cd08180         102 KKLGKKKKPLFIAIPTTS  119 (332)
T ss_pred             hCCCCCCCCCEEEeCCCC
Confidence             2    247999999964

1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat

>PRK10586 putative oxidoreductase; Provisional

Probab=95.74  E-value=0.052  Score=49.72  Aligned_cols=86  Identities=9%  Similarity=0.019  Sum_probs=63.5

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~t~~  131 (196)
                      .++.||+|..+=.....++...|++-|+.+  .+.+-+-+.+.+.++.+..+ .++++||++.|++.. .+=.+|.....
T Consensus        35 ~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~~~~  111 (362)
T PRK10586         35 SRAVWIYGERAIAAAQPYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARRLGL  111 (362)
T ss_pred             CeEEEEEChHHHHHHHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhhcCC
Confidence            479999998776666677788899888754  34445556777777766554 478999999997653 44466777889


Q ss_pred             cEEEecCCCC
Q 029271          132 LVIRVPLLSE  141 (196)
Q Consensus       132 PVIgvP~~~~  141 (196)
                      |+|.||+..+
T Consensus       112 p~i~vPT~a~  121 (362)
T PRK10586        112 PFVAIPTIAA  121 (362)
T ss_pred             CEEEEeCCcc
Confidence            9999999753

>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like

Probab=95.28  E-value=0.16  Score=47.04  Aligned_cols=87  Identities=20%  Similarity=0.262  Sum_probs=63.3

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEE--E--Ec---ccCCc-hHHHHHHHHHhhCCCe---EEEEecCC-
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIK--I--LP---PHQNC-KEALSYALSAKERGIK---IIIVGDGV-  117 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~--V--~S---aHR~p-~~~~~~~~~~e~~~~~---V~IavAG~-  117 (196)
                      .++.||+.+.-.-   +..+++...|+.-|+.+++.  +  ..   .++++ +.+.++.+.+.+.+++   ++|++.|+ 
T Consensus        31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~  110 (369)
T cd08198          31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA  110 (369)
T ss_pred             CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence            4789998875554   44578888888778765422  2  11   34553 6677788888887775   99999888 


Q ss_pred             CCchhHhhhh--ccCCcEEEecCC
Q 029271          118 EAHLSGVAAA--NSQILVIRVPLL  139 (196)
Q Consensus       118 sa~L~gvvA~--~t~~PVIgvP~~  139 (196)
                      ..-+++++|+  +--.|.|.+|+.
T Consensus       111 v~D~ag~vA~~~~rGip~I~IPTT  134 (369)
T cd08198         111 VLDAVGYAAATAHRGVRLIRIPTT  134 (369)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCC
Confidence            5668999987  446899999997

DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.

>PRK15138 aldehyde reductase; Provisional

Probab=95.26  E-value=0.076  Score=48.89  Aligned_cols=66  Identities=14%  Similarity=0.120  Sum_probs=48.7

Q ss_pred             CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc
Q 029271           53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH  120 (196)
Q Consensus        53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~  120 (196)
                      .++.|++|+.|  -....+++.+.|+  |+.+.+. -...+-+.+.+.+.++.+++.++++||++.|+|.-
T Consensus        30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i   98 (387)
T PRK15138         30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVL   98 (387)
T ss_pred             CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence            57999988654  2345677887876  6654332 12467788899999999999999999999998653

>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]

Probab=95.07  E-value=0.083  Score=49.07  Aligned_cols=88  Identities=17%  Similarity=0.155  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~  131 (196)
                      .++.|++|-..---..++..+.|+..|+ ...-+..-+-+-+++.++.+.....+++++|++.|+. --.+=++|-...+
T Consensus        31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~  109 (360)
T COG0371          31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL  109 (360)
T ss_pred             CceEEEEChhHHHHHHHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999998 4444555777889999998888767789999998874 4578888999999


Q ss_pred             cEEEecCCCC
Q 029271          132 LVIRVPLLSE  141 (196)
Q Consensus       132 PVIgvP~~~~  141 (196)
                      |+|.||+..+
T Consensus       110 pfIsvPT~AS  119 (360)
T COG0371         110 PFISVPTIAS  119 (360)
T ss_pred             CEEEecCccc
Confidence            9999999864

>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like

Probab=95.02  E-value=0.22  Score=45.51  Aligned_cols=83  Identities=12%  Similarity=0.100  Sum_probs=64.2

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCCC-CchhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVE-AHLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~s-a~L~gvv  125 (196)
                      .++.||+...-.--+.+.+.+.|+  ++.  +.+.+   .+++.+.+.+..+.+...++   +++|++.|++ .-+++++
T Consensus        20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~~--~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~v   95 (346)
T cd08196          20 ENDVFIVDANVAELYRDRLDLPLD--AAP--VIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFV   95 (346)
T ss_pred             CeEEEEECccHHHHHHHHHHHHhc--CCe--EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence            478888877554447777777776  443  33443   59999999999999999888   7999999884 5699999


Q ss_pred             hh--ccCCcEEEecCC
Q 029271          126 AA--NSQILVIRVPLL  139 (196)
Q Consensus       126 A~--~t~~PVIgvP~~  139 (196)
                      |+  .-..|.|.+|+.
T Consensus        96 A~~~~rgi~~i~iPTT  111 (346)
T cd08196          96 ASIYMRGVSWSFVPTT  111 (346)
T ss_pred             HHHHHcCCCeEEeccc
Confidence            85  457799999984

DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=94.72  E-value=0.38  Score=46.68  Aligned_cols=129  Identities=14%  Similarity=0.136  Sum_probs=88.9

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHH-HHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQ  130 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~-~~~e~~~~~V~IavAG~sa~L~gvvA~~t~  130 (196)
                      .|+|..+  |.|.  ..+.+..++.+|+...++++  .....++..+++ ++++.++++|||+-.|.    +..+-..++
T Consensus        14 ~p~~~~~--~~~~--l~~~~~~i~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~dviIsrG~t----a~~i~~~~~   83 (538)
T PRK15424         14 KPVIWTV--SVSR--LFELFRDISLEFDHLANITP--IQLGFEKAVTYIRKRLATERCDAIIAAGSN----GAYLKSRLS   83 (538)
T ss_pred             CCeEEEe--eHHH--HHHHHHHHHHhcCCCceEEe--hhhhHHHHHHHHHHHHhhCCCcEEEECchH----HHHHHhhCC
Confidence            3444443  4444  56677788888887666554  457788888888 55778899999995554    455667789


Q ss_pred             CcEEEecCCCCCCChhhhhhhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 029271          131 ILVIRVPLLSEDWSEDDVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  195 (196)
Q Consensus       131 ~PVIgvP~~~~~~~G~DLlS~lqmPsGv--pvatV~I~~~~nAA~~AaqILa~~--------d~~l~~kl~~~r~  195 (196)
                      +|||-++++     |.|++..+.-....  .+++|+-.+-...+..-.++|++.        .++++..++..++
T Consensus        84 iPVv~i~~s-----~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~  153 (538)
T PRK15424         84 VPVILIKPS-----GFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA  153 (538)
T ss_pred             CCEEEecCC-----HhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence            999999875     46755555432222  378887788888888778888763        3467777766654

>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=94.69  E-value=0.11  Score=42.58  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=51.8

Q ss_pred             CchHHHHHHHHH-hhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCCCCChhhhhhhhcC-CC-CCeeeEEecCCh
Q 029271           92 NCKEALSYALSA-KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRM-PS-HVQVASVPRNNA  168 (196)
Q Consensus        92 ~p~~~~~~~~~~-e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~~~~G~DLlS~lqm-Ps-GvpvatV~I~~~  168 (196)
                      +.++..+.++++ +.+|++|||+-.|    -+-.+..+++.|||.+|++     +.|++..++. .. |-.++.|+-.+.
T Consensus        18 ~~e~~v~~a~~~~~~~g~dViIsRG~----ta~~lr~~~~iPVV~I~~s-----~~Dil~al~~a~~~~~~Iavv~~~~~   88 (176)
T PF06506_consen   18 SLEEAVEEARQLLESEGADVIISRGG----TAELLRKHVSIPVVEIPIS-----GFDILRALAKAKKYGPKIAVVGYPNI   88 (176)
T ss_dssp             -HHHHHHHHHHHHTTTT-SEEEEEHH----HHHHHHCC-SS-EEEE--------HHHHHHHHHHCCCCTSEEEEEEESS-
T ss_pred             cHHHHHHHHHHhhHhcCCeEEEECCH----HHHHHHHhCCCCEEEECCC-----HhHHHHHHHHHHhcCCcEEEEecccc
Confidence            558888999998 8899999999554    4566777889999999975     4674444443 22 223788877777


Q ss_pred             hhHHHHHHHHHcc
Q 029271          169 KNAALYAVKVLGI  181 (196)
Q Consensus       169 ~nAA~~AaqILa~  181 (196)
                      ..-.....++|++
T Consensus        89 ~~~~~~~~~ll~~  101 (176)
T PF06506_consen   89 IPGLESIEELLGV  101 (176)
T ss_dssp             SCCHHHHHHHHT-
T ss_pred             cHHHHHHHHHhCC
Confidence            6656666777776

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.

>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]

Probab=93.94  E-value=0.39  Score=44.85  Aligned_cols=88  Identities=20%  Similarity=0.249  Sum_probs=69.2

Q ss_pred             CeEEEEEcCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc----hhHhhh
Q 029271           53 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAA  126 (196)
Q Consensus        53 ~~V~IimGS~-SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~----L~gvvA  126 (196)
                      .++.||++.. ......+++.+.|+.-||+|.+. =...+-+-+.+.+-++.+++.+++.||++.|+|..    +-.+++
T Consensus        30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~  109 (377)
T COG1454          30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA  109 (377)
T ss_pred             CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHh
Confidence            4788998664 66789999999999999887753 23477777888888899999999999999999853    344444


Q ss_pred             hcc---------------CCcEEEecCCC
Q 029271          127 ANS---------------QILVIRVPLLS  140 (196)
Q Consensus       127 ~~t---------------~~PVIgvP~~~  140 (196)
                      .+.               ..|+|.+|+..
T Consensus       110 ~~~~~~~~~~~i~~~~~~~~plIaIPTTa  138 (377)
T COG1454         110 ENPGSVLDYEGIGKVKKPKAPLIAIPTTA  138 (377)
T ss_pred             hCCchhhhhcccccccCCCCCEEEecCCC
Confidence            433               17999999975

>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional

Probab=93.90  E-value=0.35  Score=48.93  Aligned_cols=65  Identities=17%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             CeEEEEEcCCC-CHHHHHHHHHHHH--HhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 029271           53 PIVGIIMESDL-DLPVMNDAARTLS--DFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVEA  119 (196)
Q Consensus        53 ~~V~IimGS~S-D~~~~~~~~~~l~--~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa  119 (196)
                      .++.||+|... +....+++.+.|+  ..|+.+  .+.+   .+.+.+.+.+.++.+.+.++++||++.|+|.
T Consensus       481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~--~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv  551 (862)
T PRK13805        481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEY--EVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP  551 (862)
T ss_pred             CEEEEEECcchhhcchHHHHHHHHhcccCCCeE--EEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence            58999997543 3447888999998  666654  3433   5788899999999999999999999999864

>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor

Probab=93.62  E-value=4.2  Score=34.89  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  127 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-  127 (196)
                      +..|++++.+.+|   ....+.+.+.++++|.  .+-+......+++..++++.+...+++-+|........ ...+.- 
T Consensus        60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~l  136 (327)
T TIGR02417        60 SRTIGLVIPDLENYSYARIAKELEQQCREAGY--QLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPE-DAYYQKL  136 (327)
T ss_pred             CceEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-hHHHHHH
Confidence            4579999875544   3445667777778886  55566666778888888888888888755554432211 122222 


Q ss_pred             -ccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 029271          128 -NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI  181 (196)
Q Consensus       128 -~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~  181 (196)
                       ....||+-+=...               ++.++..|..||-.++.+++-.++..
T Consensus       137 ~~~~iPvV~~~~~~---------------~~~~~~~V~~dn~~~~~~~~~~L~~~  176 (327)
T TIGR02417       137 QNEGLPVVALDRSL---------------DDEHFCSVISDDVDAAAELIERLLSQ  176 (327)
T ss_pred             HhcCCCEEEEcccc---------------CCCCCCEEEeCcHHHHHHHHHHHHHC
Confidence             2457887542211               11123456678877777666555543

Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=93.54  E-value=1.2  Score=43.15  Aligned_cols=117  Identities=10%  Similarity=0.116  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHH-HHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCCCCChh
Q 029271           68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSED  146 (196)
Q Consensus        68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~-~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~~~~G~  146 (196)
                      .+-+.++..++.-..++.|  .-...++..+++ +.++.+|++|||+-.|    -+.++-..+++|||-++++     |.
T Consensus        16 ~~~~~~i~~~~~~~~~~~v--~~~~~~~~~~~a~~~~~~~~~dviIsrG~----ta~~i~~~~~iPVv~i~~s-----~~   84 (526)
T TIGR02329        16 FDLFRDIAPEFDHRANITP--IQLGFEDAVREIRQRLGAERCDVVVAGGS----NGAYLKSRLSLPVIVIKPT-----GF   84 (526)
T ss_pred             HHHHHHHHHhCCCCceEEE--EeccHHHHHHHHHHHHHhCCCcEEEECch----HHHHHHHhCCCCEEEecCC-----hh
Confidence            3445555566664333443  234557888877 5577788999999555    4556667889999999875     46


Q ss_pred             hhhhhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 029271          147 DVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  195 (196)
Q Consensus       147 DLlS~lqmPsGv--pvatV~I~~~~nAA~~AaqILa~~--------d~~l~~kl~~~r~  195 (196)
                      |++..+......  .+++||-.+-...+..-..+|++.        .++++..++..++
T Consensus        85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~  143 (526)
T TIGR02329        85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA  143 (526)
T ss_pred             hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence            755555432222  378888888888888888888763        3466777766654

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like

Probab=93.31  E-value=0.57  Score=42.77  Aligned_cols=84  Identities=13%  Similarity=-0.009  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhC---CCeEEEEecCCCCchhH-hhh--
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER---GIKIIIVGDGVEAHLSG-VAA--  126 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~---~~~V~IavAG~sa~L~g-vvA--  126 (196)
                      ++.|+++. +-..  +++.+.|+..|+.+.+. -....-+.+.+.+.++.++..   ++++||++.|+|.-=.+ .+|  
T Consensus        27 ~~lvvtd~-~~~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~  103 (347)
T cd08184          27 PAVFFVDD-VFQG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNM  103 (347)
T ss_pred             eEEEEECc-chhh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence            46677753 3333  67777888889886653 123566667788888888776   89999999998642111 111  


Q ss_pred             -h---------------ccCCcEEEecCCC
Q 029271          127 -A---------------NSQILVIRVPLLS  140 (196)
Q Consensus       127 -~---------------~t~~PVIgvP~~~  140 (196)
                       .               ....|+|.||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa  133 (347)
T cd08184         104 LTNPGSAEDYQGWDLVKNPAVYKIGIPTLS  133 (347)
T ss_pred             HhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence             1               1247899999964

Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.

>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems

Probab=93.19  E-value=0.34  Score=42.13  Aligned_cols=83  Identities=18%  Similarity=0.114  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCC--HHHHHHHHHHHHHhCCCe---EEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           54 IVGIIMESDLD--LPVMNDAARTLSDFGVPY---EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        54 ~V~IimGS~SD--~~~~~~~~~~l~~~gi~~---ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      +|+|+--...|  -+..+..++.|++.|+..   ++.+..+.+.++.+.++++++.....++||++...++ .. +..-.
T Consensus         1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa-~~-~~~~~   78 (294)
T PF04392_consen    1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAA-QA-LAKHL   78 (294)
T ss_dssp             EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHH-HH-HHHH-
T ss_pred             CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHH-HH-HHHhc
Confidence            35666554444  567788899999999975   7888999999999999999998888899999855443 22 33334


Q ss_pred             cC-CcEEEecC
Q 029271          129 SQ-ILVIRVPL  138 (196)
Q Consensus       129 t~-~PVIgvP~  138 (196)
                      .. .||+-|-+
T Consensus        79 ~~~iPVVf~~V   89 (294)
T PF04392_consen   79 KDDIPVVFCGV   89 (294)
T ss_dssp             SS-S-EEEECE
T ss_pred             CCCcEEEEEec
Confidence            45 89999888

ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.

>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc)

Probab=93.11  E-value=0.81  Score=39.74  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=43.7

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeE--EEEEcc-----cCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYE--IKILPP-----HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  126 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~e--v~V~Sa-----HR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA  126 (196)
                      ...|++|..-|..........+  +.+.++  +.+.+.     .++.....++.+.......+++++.......+++.++
T Consensus        30 ~~~~~tg~h~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~a  107 (363)
T cd03786          30 LVLVVTGQHYDMEMGVTFFEIL--FIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALA  107 (363)
T ss_pred             EEEEEeCCCCChhhhHHHHHhh--CCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHH
Confidence            3445555555555555554444  333332  222221     1122233444444555567888887556667766665


Q ss_pred             h-ccCCcEEEec
Q 029271          127 A-NSQILVIRVP  137 (196)
Q Consensus       127 ~-~t~~PVIgvP  137 (196)
                      + ....||+.+.
T Consensus       108 a~~~~iPvv~~~  119 (363)
T cd03786         108 AFKLGIPVAHVE  119 (363)
T ss_pred             HHHcCCCEEEEe
Confidence            5 5788999864

The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st

>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR

Probab=93.06  E-value=3.8  Score=33.36  Aligned_cols=80  Identities=14%  Similarity=0.083  Sum_probs=49.0

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      |+++..+.+|   ....+.+.+.++++|+.+  .+......++...++++.+...+++-+|..........---.-....
T Consensus         2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~~~--~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~~~i   79 (267)
T cd06283           2 IGVIVADITNPFSSLVLKGIEDVCRAHGYQV--LVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGK   79 (267)
T ss_pred             EEEEecCCccccHHHHHHHHHHHHHHcCCEE--EEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhcCCC
Confidence            6677766555   556678888889998654  44545556677778888888888875555443322211001123457


Q ss_pred             cEEEe
Q 029271          132 LVIRV  136 (196)
Q Consensus       132 PVIgv  136 (196)
                      |||.+
T Consensus        80 pvV~~   84 (267)
T cd06283          80 PVVLV   84 (267)
T ss_pred             CEEEE
Confidence            88876

Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b

>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=92.91  E-value=4.4  Score=33.35  Aligned_cols=79  Identities=15%  Similarity=0.190  Sum_probs=48.7

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      |+++....+|   ....+.+.+.++++|.  ++-+...+..++...++++.....+++-+|...- .....-.-.-....
T Consensus         2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~-~~~~~~~~~~~~~i   78 (263)
T cd06280           2 VGLIVADIRNPFFTAVSRAVEDAAYRAGL--RVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT-RATLRRLAELRLSF   78 (263)
T ss_pred             EEEEecccccccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC-CCCchHHHHHhcCC
Confidence            5666655443   3455677788889985  4556666778888778888888888875555432 22222111112356


Q ss_pred             cEEEe
Q 029271          132 LVIRV  136 (196)
Q Consensus       132 PVIgv  136 (196)
                      |||.+
T Consensus        79 PvV~~   83 (263)
T cd06280          79 PVVLI   83 (263)
T ss_pred             CEEEE
Confidence            88876

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli

Probab=92.90  E-value=4.5  Score=33.15  Aligned_cols=82  Identities=9%  Similarity=0.105  Sum_probs=50.1

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh-HhhhhccC
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQ  130 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~-gvvA~~t~  130 (196)
                      |+++..+.++   ....+.+.+.++++|..  +.+......+++..+.++....++++.+|.......... ..+.....
T Consensus         2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~   79 (269)
T cd06275           2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGYN--LILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRH   79 (269)
T ss_pred             EEEEeCCCCcchHHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCC
Confidence            6777765433   33455677778888864  445556778888888888888888875555443322211 22322346


Q ss_pred             CcEEEecC
Q 029271          131 ILVIRVPL  138 (196)
Q Consensus       131 ~PVIgvP~  138 (196)
                      .||+-+-.
T Consensus        80 ipvV~i~~   87 (269)
T cd06275          80 IPMVVMDW   87 (269)
T ss_pred             CCEEEEec
Confidence            78876543

Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a

>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]

Probab=92.67  E-value=0.98  Score=42.05  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=65.0

Q ss_pred             HHHhCCCeEEEE-Eccc--CCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-ccCCcEEEecCCCCCCChhhhhh
Q 029271           75 LSDFGVPYEIKI-LPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVPLLSEDWSEDDVIN  150 (196)
Q Consensus        75 l~~~gi~~ev~V-~SaH--R~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-~t~~PVIgvP~~~~~~~G~DLlS  150 (196)
                      ++.++.+|++-. --..  -|-+.+...++++.++|+++ |++||+.+..--+.++ --..||+|+|.-...        
T Consensus        65 ~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdl-IvfaGGDGTarDVa~av~~~vPvLGipaGvk~--------  135 (355)
T COG3199          65 AEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDL-IVFAGGDGTARDVAEAVGADVPVLGIPAGVKN--------  135 (355)
T ss_pred             HHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceE-EEEeCCCccHHHHHhhccCCCceEeeccccce--------
Confidence            356666776552 1111  34578888999999999875 5678888888888888 889999999985532        


Q ss_pred             hhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 029271          151 SIRMPSHVQVASVPRNNAKNAALYAVKVLGI  181 (196)
Q Consensus       151 ~lqmPsGvpvatV~I~~~~nAA~~AaqILa~  181 (196)
                          -||+  .   -..|+.||.++.+++.-
T Consensus       136 ----~Sgv--f---A~~P~~aa~l~~~~lkg  157 (355)
T COG3199         136 ----YSGV--F---ALSPEDAARLLGAFLKG  157 (355)
T ss_pred             ----eccc--c---ccChHHHHHHHHHHhcc
Confidence                2443  2   25899999999998876

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=92.32  E-value=0.72  Score=33.68  Aligned_cols=74  Identities=14%  Similarity=0.003  Sum_probs=47.5

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  129 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t  129 (196)
                      ..|.|+|-|++|.   ++|.++++.|+++|++|+..=...+  + +..+.+.+                      .+|..
T Consensus         8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~-~~~~~l~~----------------------~~g~~   62 (90)
T cd03028           8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--E-EVRQGLKE----------------------YSNWP   62 (90)
T ss_pred             CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--H-HHHHHHHH----------------------HhCCC
Confidence            4688898877655   5777999999999999886554433  2 23222221                      23566


Q ss_pred             CCcEEEecCCCCCCChhh-hhhhhc
Q 029271          130 QILVIRVPLLSEDWSEDD-VINSIR  153 (196)
Q Consensus       130 ~~PVIgvP~~~~~~~G~D-LlS~lq  153 (196)
                      +.|+|=+  .+...+|.| +....+
T Consensus        63 tvP~vfi--~g~~iGG~~~l~~l~~   85 (90)
T cd03028          63 TFPQLYV--NGELVGGCDIVKEMHE   85 (90)
T ss_pred             CCCEEEE--CCEEEeCHHHHHHHHH
Confidence            7777743  333467777 776554

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase

Probab=92.17  E-value=0.74  Score=41.76  Aligned_cols=87  Identities=10%  Similarity=0.087  Sum_probs=57.9

Q ss_pred             CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCC--CeEEEEecCCCCc-hhHhhhh
Q 029271           53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERG--IKIIIVGDGVEAH-LSGVAAA  127 (196)
Q Consensus        53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~--~~V~IavAG~sa~-L~gvvA~  127 (196)
                      .+|.|+++... +....+++.+.|+..  .+.+ .=.-.+.+.+.+.+..+.+...+  +++||++.|+|.. .+..+|.
T Consensus        24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~  101 (355)
T TIGR03405        24 RRVVVVTFPEARALGLARRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAV  101 (355)
T ss_pred             CeEEEEECcchhhcchHHHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Confidence            47899997543 346677777777643  2222 11235788888888888887766  8999999999753 2223222


Q ss_pred             c----------------------cCCcEEEecCCCC
Q 029271          128 N----------------------SQILVIRVPLLSE  141 (196)
Q Consensus       128 ~----------------------t~~PVIgvP~~~~  141 (196)
                      .                      ...|+|.||+..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTag  137 (355)
T TIGR03405       102 GLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAG  137 (355)
T ss_pred             HHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCc
Confidence            1                      2479999999653

2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=91.79  E-value=5.8  Score=32.54  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=63.8

Q ss_pred             EEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc--
Q 029271           55 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS--  129 (196)
Q Consensus        55 V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t--  129 (196)
                      |+|++.+.++-   ...+.+.+.++++|+.+++. ....-.+++..+.++++-+++++.||....-...+...+.-..  
T Consensus         1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~   79 (257)
T PF13407_consen    1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA   79 (257)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc
Confidence            67888888884   24457778888999876655 6788899999999999999999988888777777777776543  


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||.+
T Consensus        80 gIpvv~~   86 (257)
T PF13407_consen   80 GIPVVTV   86 (257)
T ss_dssp             TSEEEEE
T ss_pred             CceEEEE
Confidence            5799874

...

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=91.63  E-value=0.79  Score=42.15  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHH-HhCCCeEEEEEcccC-----CchHHHHHHHHHhh-CCCeEEEEecCCCCchhHhhhhcc----CCcEE
Q 029271           66 PVMNDAARTLS-DFGVPYEIKILPPHQ-----NCKEALSYALSAKE-RGIKIIIVGDGVEAHLSGVAAANS----QILVI  134 (196)
Q Consensus        66 ~~~~~~~~~l~-~~gi~~ev~V~SaHR-----~p~~~~~~~~~~e~-~~~~V~IavAG~sa~L~gvvA~~t----~~PVI  134 (196)
                      ...++.++.++ +.+=||-+-.-++|-     .-+-.+|+..+.+. ..++-+|++.|..+..+|++++..    ..+||
T Consensus       132 ~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~Vi  211 (323)
T COG2515         132 ASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVI  211 (323)
T ss_pred             hhhHHHHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceE
Confidence            56667777666 555566654444222     12456677777665 567999999999999999999987    89999


Q ss_pred             EecCCCC
Q 029271          135 RVPLLSE  141 (196)
Q Consensus       135 gvP~~~~  141 (196)
                      |||++..
T Consensus       212 G~~v~~~  218 (323)
T COG2515         212 GIDVSAD  218 (323)
T ss_pred             EEeecCC
Confidence            9999874

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=91.59  E-value=0.53  Score=40.73  Aligned_cols=78  Identities=14%  Similarity=0.123  Sum_probs=49.9

Q ss_pred             CCeEEEEEcCCCCHHHH-----HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEe----cCCCCchh
Q 029271           52 APIVGIIMESDLDLPVM-----NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG----DGVEAHLS  122 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~-----~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav----AG~sa~L~  122 (196)
                      +-+|+|+||+.|+....     ..+.+.|++.|+.+++--  ..   +...+.+   +...+++++..    -|....++
T Consensus         4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~--~~---~~~~~~~---~~~~~D~v~~~~~g~~~~~~~~~   75 (304)
T PRK01372          4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPID--PG---EDIAAQL---KELGFDRVFNALHGRGGEDGTIQ   75 (304)
T ss_pred             CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEe--cC---cchHHHh---ccCCCCEEEEecCCCCCCccHHH
Confidence            34899999999986655     899999999999765422  11   2233332   23356655443    34566677


Q ss_pred             HhhhhccCCcEEEecC
Q 029271          123 GVAAANSQILVIRVPL  138 (196)
Q Consensus       123 gvvA~~t~~PVIgvP~  138 (196)
                      +++... .+|++|.++
T Consensus        76 ~~le~~-gi~~~g~~~   90 (304)
T PRK01372         76 GLLELL-GIPYTGSGV   90 (304)
T ss_pred             HHHHHc-CCCccCCCH
Confidence            776544 777777653

>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=91.57  E-value=6.8  Score=32.46  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhC---CCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFG---VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  126 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~g---i~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--  126 (196)
                      |+++..+.++   ....+.+.+.++++|   ..+++.+......++...++++.+...+++.||....-...+...+.  
T Consensus         2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~   81 (274)
T cd06311           2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKA   81 (274)
T ss_pred             eeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence            5666655555   344566777777764   56788888877777777788888888888877776544444544433  


Q ss_pred             hccCCcEEEec
Q 029271          127 ANSQILVIRVP  137 (196)
Q Consensus       127 ~~t~~PVIgvP  137 (196)
                      .....|||.+-
T Consensus        82 ~~~gIpvV~~d   92 (274)
T cd06311          82 KKAGIFVVVVD   92 (274)
T ss_pred             HHCCCeEEEEc
Confidence            24568988763

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=91.48  E-value=1.1  Score=33.49  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEE
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIK   85 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~   85 (196)
                      ++|.|.|-|++|.   |+|.++++.|+++|++|+..
T Consensus        12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~   47 (97)
T TIGR00365        12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV   47 (97)
T ss_pred             CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE
Confidence            5799999877554   77789999999999998743

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK13055 putative lipid kinase; Reviewed

Probab=91.19  E-value=1.4  Score=39.48  Aligned_cols=77  Identities=17%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc---CCcEEEe
Q 029271           60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIRV  136 (196)
Q Consensus        60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t---~~PVIgv  136 (196)
                      |+.+.....+++...|++.|+.+++..+.-+  +....++++++..++++++| ++|+.+.|--|+.++-   ..|.+|+
T Consensus        14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vv-v~GGDGTl~evvngl~~~~~~~~Lgi   90 (334)
T PRK13055         14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLII-AAGGDGTINEVVNGIAPLEKRPKMAI   90 (334)
T ss_pred             CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEE-EECCCCHHHHHHHHHhhcCCCCcEEE
Confidence            5555566778889999999998877665433  34556666666666777666 5688999988888864   2355665


Q ss_pred             cCC
Q 029271          137 PLL  139 (196)
Q Consensus       137 P~~  139 (196)
                      =|.
T Consensus        91 iP~   93 (334)
T PRK13055         91 IPA   93 (334)
T ss_pred             ECC
Confidence            443

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation

Probab=90.78  E-value=7.9  Score=31.57  Aligned_cols=79  Identities=13%  Similarity=0.097  Sum_probs=49.1

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccC
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQ  130 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~  130 (196)
                      |+++..+..|   ....+.+.+.+++.|.  ++.+...+..++...++++.+...+++.+|..+.... ..-..+ ....
T Consensus         2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l-~~~~   78 (268)
T cd06298           2 VGVIIPDITNSYFAELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEF-KRSP   78 (268)
T ss_pred             EEEEECCCcchHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHH-hcCC
Confidence            5677755444   3444567777888876  5555567888888888888887778876665443221 111122 2346


Q ss_pred             CcEEEe
Q 029271          131 ILVIRV  136 (196)
Q Consensus       131 ~PVIgv  136 (196)
                      .|||-+
T Consensus        79 ipvV~~   84 (268)
T cd06298          79 TPVVLA   84 (268)
T ss_pred             CCEEEE
Confidence            788766

Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.

>PRK11914 diacylglycerol kinase; Reviewed

Probab=90.71  E-value=1.4  Score=38.61  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=56.7

Q ss_pred             eEEEEE----cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc-
Q 029271           54 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-  128 (196)
Q Consensus        54 ~V~Iim----GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~-  128 (196)
                      ++.+|.    |+-......+++.+.|++.|+.+++..+.-   +....++++++..++++++| ++|+.+.+--|+.++ 
T Consensus        10 ~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~---~~~~~~~a~~~~~~~~d~vv-v~GGDGTi~evv~~l~   85 (306)
T PRK11914         10 KVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD---AHDARHLVAAALAKGTDALV-VVGGDGVISNALQVLA   85 (306)
T ss_pred             eEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC---HHHHHHHHHHHHhcCCCEEE-EECCchHHHHHhHHhc
Confidence            555654    445556778889999999998877754432   67888888888777777655 778888888888775 


Q ss_pred             -cCCcEEEecC
Q 029271          129 -SQILVIRVPL  138 (196)
Q Consensus       129 -t~~PVIgvP~  138 (196)
                       +..| +++=|
T Consensus        86 ~~~~~-lgiiP   95 (306)
T PRK11914         86 GTDIP-LGIIP   95 (306)
T ss_pred             cCCCc-EEEEe
Confidence             3444 44433

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=90.60  E-value=8.5  Score=31.59  Aligned_cols=81  Identities=10%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  128 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~  128 (196)
                      +|+++..+.+|   ....+.+.+.++++|+.+.+  ...=..++...++++.+-..+++.||..++........+.-  .
T Consensus         1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~   78 (273)
T cd06305           1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD   78 (273)
T ss_pred             CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHH
Confidence            47888877666   33456777888899986655  33334677777788877777898888877665555554432  3


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      -..|||.+
T Consensus        79 ~~ipvV~~   86 (273)
T cd06305          79 AGIPVVAF   86 (273)
T ss_pred             cCCCEEEe
Confidence            45788876

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=90.51  E-value=2.4  Score=33.28  Aligned_cols=85  Identities=15%  Similarity=0.177  Sum_probs=55.1

Q ss_pred             eEEEEEcCC-CC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch-hHhhhhc
Q 029271           54 IVGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAAAN  128 (196)
Q Consensus        54 ~V~IimGS~-SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L-~gvvA~~  128 (196)
                      +|+++..+. ++   ....+.+...++++|..+++.+......++...+.++++..++++.+|......... ..-.+..
T Consensus         1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~   80 (269)
T cd01391           1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAA   80 (269)
T ss_pred             CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence            356666443 12   233445556677866777888888888888888888888888888777765543332 1122345


Q ss_pred             cCCcEEEecC
Q 029271          129 SQILVIRVPL  138 (196)
Q Consensus       129 t~~PVIgvP~  138 (196)
                      ...|+|.+-.
T Consensus        81 ~~ip~v~~~~   90 (269)
T cd01391          81 AGIPVVSLDA   90 (269)
T ss_pred             cCCcEEEecC
Confidence            6789987643

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]

Probab=90.47  E-value=2  Score=40.14  Aligned_cols=140  Identities=19%  Similarity=0.228  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhhh
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAA  126 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvvA  126 (196)
                      +++|++-.+=.--+.++....|+..|+..+..+..   .+|+.+.+.++.+.+-..++   +.+|++.|+ -+-|+|++|
T Consensus        35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~A  114 (360)
T COG0337          35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAA  114 (360)
T ss_pred             eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence            79999977777779999999999999988766665   68888888888888877766   588888877 678999999


Q ss_pred             h--ccCCcEEEecCCC-----CCCCh---------hhhhhhhcCCCCCeeeEEecC----ChhhHHHHH-HHHHccCCHH
Q 029271          127 A--NSQILVIRVPLLS-----EDWSE---------DDVINSIRMPSHVQVASVPRN----NAKNAALYA-VKVLGIADED  185 (196)
Q Consensus       127 ~--~t~~PVIgvP~~~-----~~~~G---------~DLlS~lqmPsGvpvatV~I~----~~~nAA~~A-aqILa~~d~~  185 (196)
                      |  +--.+.|.+|+.-     ++.+|         -.+....-.|..|=+-|.-..    .-+.+++.= .+.-.+.|++
T Consensus       115 aty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~  194 (360)
T COG0337         115 ATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPE  194 (360)
T ss_pred             HHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHH
Confidence            9  4778999999962     22222         223333333553321111000    233444442 4555567899


Q ss_pred             HHHHHHHH
Q 029271          186 LLERIRKY  193 (196)
Q Consensus       186 l~~kl~~~  193 (196)
                      +++.|...
T Consensus       195 ~f~~Le~~  202 (360)
T COG0337         195 FFDWLEEN  202 (360)
T ss_pred             HHHHHHHH
Confidence            88888765

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems

Probab=90.33  E-value=7.9  Score=30.85  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=53.3

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS  129 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t  129 (196)
                      |+++.-..++   ....+.+...++++|+  ++.+...+..++...+.++++...+++.+|..+.....+. .+.-  ..
T Consensus         2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~   78 (264)
T cd01537           2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-IVKLARKA   78 (264)
T ss_pred             eEEEEcCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-HHHHhhhc
Confidence            5666643312   3344555666778886  5556666677788888888888888888888766555554 3333  45


Q ss_pred             CCcEEEecCC
Q 029271          130 QILVIRVPLL  139 (196)
Q Consensus       130 ~~PVIgvP~~  139 (196)
                      ..|||.+-..
T Consensus        79 ~ip~v~~~~~   88 (264)
T cd01537          79 GIPVVLVDRD   88 (264)
T ss_pred             CCCEEEeccC
Confidence            6899987543

Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species

Probab=90.30  E-value=2.9  Score=35.91  Aligned_cols=83  Identities=16%  Similarity=0.095  Sum_probs=57.5

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc--
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--  128 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~--  128 (196)
                      +|+++..+.+|   ....+.+.+.++++|..+++.+...+..++.-.++++++...+++-||..+.....+..++...  
T Consensus         1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~   80 (303)
T cd01539           1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ   80 (303)
T ss_pred             CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHH
Confidence            46777765544   2344567777888666678888888999998889898888888986666554444455555443  


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      -..|||.+
T Consensus        81 ~giPvV~~   88 (303)
T cd01539          81 KNIPVIFF   88 (303)
T ss_pred             CCCCEEEe
Confidence            36788865

Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>PRK10653 D-ribose transporter subunit RbsB; Provisional

Probab=90.18  E-value=11  Score=32.05  Aligned_cols=83  Identities=14%  Similarity=0.268  Sum_probs=54.3

Q ss_pred             CeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271           53 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  127 (196)
Q Consensus        53 ~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--  127 (196)
                      ..|+++..+.+|   ....+.+.+.++++|+.+.+  ......+++..++++.+..++++.+|.....+..+...+.-  
T Consensus        27 ~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~--~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~  104 (295)
T PRK10653         27 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN  104 (295)
T ss_pred             CeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEE--ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Confidence            479999977665   34455667788899976554  45567788888888888777888677655443333222221  


Q ss_pred             ccCCcEEEec
Q 029271          128 NSQILVIRVP  137 (196)
Q Consensus       128 ~t~~PVIgvP  137 (196)
                      ....|||.+-
T Consensus       105 ~~~ipvV~~~  114 (295)
T PRK10653        105 QANIPVITLD  114 (295)
T ss_pred             HCCCCEEEEc
Confidence            2457888763

>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]

Probab=90.00  E-value=1.4  Score=40.61  Aligned_cols=80  Identities=18%  Similarity=0.101  Sum_probs=66.1

Q ss_pred             eEEEEE--cCCCCHHHHHHHHHHHHHhCC-CeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271           54 IVGIIM--ESDLDLPVMNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ  130 (196)
Q Consensus        54 ~V~Iim--GS~SD~~~~~~~~~~l~~~gi-~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~  130 (196)
                      +|+|.-  --.+=-+..+-+.+.|+++|. +.++-+-++|-.+....++.+++..++.+|+|++++-++-  .+++.-.+
T Consensus        32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq--~~~s~~~~  109 (322)
T COG2984          32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQ--ALVSATKT  109 (322)
T ss_pred             eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHH--HHHHhcCC
Confidence            466554  445556677889999999999 8899999999999999999999999999999999887653  46667777


Q ss_pred             CcEEE
Q 029271          131 ILVIR  135 (196)
Q Consensus       131 ~PVIg  135 (196)
                      +||+-
T Consensus       110 iPVV~  114 (322)
T COG2984         110 IPVVF  114 (322)
T ss_pred             CCEEE
Confidence            99984

>PRK13337 putative lipid kinase; Reviewed

Probab=89.96  E-value=1.3  Score=38.96  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC---CcEEEe
Q 029271           60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ---ILVIRV  136 (196)
Q Consensus        60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~---~PVIgv  136 (196)
                      |+.......+++...|++.|+.|++..+.   .+.+..++++++..++.+++| ++|+.+.|..|+.++..   .|.||+
T Consensus        13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~---~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~~vv~gl~~~~~~~~lgi   88 (304)
T PRK13337         13 GRELFKKNLPDVLQKLEQAGYETSAHATT---GPGDATLAAERAVERKFDLVI-AAGGDGTLNEVVNGIAEKENRPKLGI   88 (304)
T ss_pred             cchhHHHHHHHHHHHHHHcCCEEEEEEec---CCCCHHHHHHHHHhcCCCEEE-EEcCCCHHHHHHHHHhhCCCCCcEEE
Confidence            33333455677888899999988887665   346677777777777777644 67889999999987542   244555


Q ss_pred             cCC
Q 029271          137 PLL  139 (196)
Q Consensus       137 P~~  139 (196)
                      =|.
T Consensus        89 iP~   91 (304)
T PRK13337         89 IPV   91 (304)
T ss_pred             ECC
Confidence            443

>PRK13054 lipid kinase; Reviewed

Probab=89.77  E-value=2.4  Score=37.30  Aligned_cols=72  Identities=18%  Similarity=0.241  Sum_probs=50.0

Q ss_pred             eEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271           54 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  129 (196)
Q Consensus        54 ~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t  129 (196)
                      ++.+|.-+.+ -.....++...|++-|+.|++..+   +.+....++++++..++.+++| ++|+.+.|-.|+.+..
T Consensus         5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~evv~~l~   77 (300)
T PRK13054          5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVT---WEKGDAARYVEEALALGVATVI-AGGGDGTINEVATALA   77 (300)
T ss_pred             eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEe---cCCCcHHHHHHHHHHcCCCEEE-EECCccHHHHHHHHHH
Confidence            4455553333 345667777889999998777544   3355567777777677777655 7788999999998854

>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators

Probab=89.23  E-value=11  Score=30.84  Aligned_cols=78  Identities=14%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  129 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t  129 (196)
                      |+|+.-+.+|   ....+.+.+.++++|+.+  -+.+....+++..++++...+.+++.+|..+...  ...++.  -..
T Consensus         2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~~~~~~l~~~   77 (268)
T cd06273           2 IGAIVPTLDNAIFARVIQAFQETLAAHGYTL--LVASSGYDLDREYAQARKLLERGVDGLALIGLDH--SPALLDLLARR   77 (268)
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHHHCCCEE--EEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHhC
Confidence            6777765544   445567888889999654  4466677788888888888887887666543322  223222  235


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..||+.+
T Consensus        78 ~iPvv~~   84 (268)
T cd06273          78 GVPYVAT   84 (268)
T ss_pred             CCCEEEE
Confidence            6888875

This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational

>TIGR03702 lip_kinase_YegS lipid kinase YegS

Probab=89.22  E-value=3  Score=36.51  Aligned_cols=69  Identities=23%  Similarity=0.319  Sum_probs=48.9

Q ss_pred             EEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271           57 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  129 (196)
Q Consensus        57 IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t  129 (196)
                      |+=|..+.....+++.+.|++.|+.|++..+   +.+....++++++...+.+++| ++|+.+.+--|+.+..
T Consensus         5 I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~   73 (293)
T TIGR03702         5 ILNGKQADNEDVREAVGDLRDEGIQLHVRVT---WEKGDAQRYVAEALALGVSTVI-AGGGDGTLREVATALA   73 (293)
T ss_pred             EEeCCccchhHHHHHHHHHHHCCCeEEEEEe---cCCCCHHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHH
Confidence            3334444555677888889999998887743   3355566777777666677655 7788999888888874

Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.

>PRK10727 DNA-binding transcriptional regulator GalR; Provisional

Probab=89.18  E-value=14  Score=32.04  Aligned_cols=63  Identities=11%  Similarity=0.038  Sum_probs=43.8

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecC
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG  116 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG  116 (196)
                      +..|+++..+.+|   ....+.+.+.+++.|.  .+-+...+..+++..++++.+...+++-+|....
T Consensus        59 ~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~  124 (343)
T PRK10727         59 TETVGLVVGDVSDPFFGAMVKAVEQVAYHTGN--FLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAK  124 (343)
T ss_pred             CCeEEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence            4579999876554   2345567777888885  4566666777777778888888888876665543

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=89.07  E-value=11  Score=30.66  Aligned_cols=80  Identities=15%  Similarity=0.289  Sum_probs=49.1

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS  129 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t  129 (196)
                      |+++..+.+|   .+..+.+.+.++++|+.  +.+......+++..+.++++...+++.+|...-.+......+.-  .-
T Consensus         2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~   79 (268)
T cd06323           2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYE--LTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA   79 (268)
T ss_pred             eeEecccccCHHHHHHHHHHHHHHHHcCce--EEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHC
Confidence            5667766555   44556777888888855  44555556778788888888777787655543322222223322  23


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||.+
T Consensus        80 ~ipvv~~   86 (268)
T cd06323          80 GIPVFTI   86 (268)
T ss_pred             CCcEEEE
Confidence            5678766

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=89.01  E-value=12  Score=30.92  Aligned_cols=80  Identities=14%  Similarity=0.144  Sum_probs=51.7

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh---Hhhh--
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS---GVAA--  126 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~---gvvA--  126 (196)
                      |+|+..+.+|   ....+.+.+.++++|+.+.  +...-..++.-.+.++++...+++-+|...+.+....   ..+.  
T Consensus         2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~   79 (273)
T cd01541           2 IGVITTYISDYIFPSIIRGIESVLSEKGYSLL--LASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKL   79 (273)
T ss_pred             eEEEeCCccchhHHHHHHHHHHHHHHcCCEEE--EEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHH
Confidence            6777765444   3566678888889987554  4445667777778888888888987776554432221   2222  


Q ss_pred             hccCCcEEEe
Q 029271          127 ANSQILVIRV  136 (196)
Q Consensus       127 ~~t~~PVIgv  136 (196)
                      -....|||.+
T Consensus        80 ~~~~ipvV~~   89 (273)
T cd01541          80 EKLGIPYVFI   89 (273)
T ss_pred             HHCCCCEEEE
Confidence            2345788876

Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family

Probab=88.83  E-value=2.4  Score=36.76  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=54.0

Q ss_pred             eEEEEE----cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271           54 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  129 (196)
Q Consensus        54 ~V~Iim----GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t  129 (196)
                      ++.||.    |+.......+++.+.|++.|+.+++..+. ++  ....+++++....+++++| ++|+.+.+--++.+.-
T Consensus         3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~d~iv-v~GGDGTl~~v~~~l~   78 (293)
T TIGR00147         3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW-EK--GDAARYVEEARKFGVDTVI-AGGGDGTINEVVNALI   78 (293)
T ss_pred             eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec-Cc--ccHHHHHHHHHhcCCCEEE-EECCCChHHHHHHHHh
Confidence            455654    44445677888999999999988875542 32  1223444444455667655 5788999998887753


Q ss_pred             ---CCcEEE-ecCCC
Q 029271          130 ---QILVIR-VPLLS  140 (196)
Q Consensus       130 ---~~PVIg-vP~~~  140 (196)
                         ..|.|| +|.-+
T Consensus        79 ~~~~~~~lgiiP~Gt   93 (293)
T TIGR00147        79 QLDDIPALGILPLGT   93 (293)
T ss_pred             cCCCCCcEEEEcCcC
Confidence               357788 67644

The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=88.31  E-value=5.9  Score=32.78  Aligned_cols=81  Identities=15%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  128 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~  128 (196)
                      +|++++...++   ....+.+.+.++++|.  ++.+......++.-.++++.+...+++.||..+.-...+...+.-  .
T Consensus         1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~   78 (282)
T cd06318           1 KIGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA   78 (282)
T ss_pred             CeeEEeccccCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH
Confidence            47777776665   2334466677788886  555666667788778888888888897666654444444333332  2


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      -..|||-+
T Consensus        79 ~~iPvV~~   86 (282)
T cd06318          79 AGVPVVVV   86 (282)
T ss_pred             CCCCEEEe
Confidence            45677754

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=87.79  E-value=2.5  Score=32.78  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=41.6

Q ss_pred             eEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC
Q 029271           54 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER  106 (196)
Q Consensus        54 ~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~  106 (196)
                      .+.|..|...+ .-+.+-..+.|+++||.|++...+..-+.+++.+.++++..+
T Consensus        32 Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D   85 (117)
T PF00763_consen   32 LAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED   85 (117)
T ss_dssp             EEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred             EEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence            67777786554 557788889999999999999999999999999999988765

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....

>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=87.63  E-value=5.9  Score=32.67  Aligned_cols=82  Identities=9%  Similarity=0.153  Sum_probs=55.2

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS  129 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t  129 (196)
                      |+++....+|   ....+.+.+.++++|..|++.+......+++..++++.+.+.+++-+|............+.-  ..
T Consensus         2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~   81 (271)
T cd06321           2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAA   81 (271)
T ss_pred             eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHC
Confidence            6677765555   234456667778888888888877778888888888888888887666555433333344332  34


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||.+
T Consensus        82 ~ipvv~~   88 (271)
T cd06321          82 GIVVVAV   88 (271)
T ss_pred             CCeEEEe
Confidence            5789887

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=87.61  E-value=2.2  Score=31.98  Aligned_cols=74  Identities=11%  Similarity=-0.011  Sum_probs=48.6

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcE
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILV  133 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PV  133 (196)
                      .|.|.+-  +.=|+|.++++.|+++|++|+..-..-+  ++ ..++.+.+..                   .+|..+.|+
T Consensus         9 ~Vvvysk--~~Cp~C~~ak~~L~~~~i~~~~vdid~~--~~-~~~~~~~l~~-------------------~tg~~tvP~   64 (99)
T TIGR02189         9 AVVIFSR--SSCCMCHVVKRLLLTLGVNPAVHEIDKE--PA-GKDIENALSR-------------------LGCSPAVPA   64 (99)
T ss_pred             CEEEEEC--CCCHHHHHHHHHHHHcCCCCEEEEcCCC--cc-HHHHHHHHHH-------------------hcCCCCcCe
Confidence            4555544  6789999999999999999886555433  22 1223232221                   236678898


Q ss_pred             EEecCCCCCCChhh-hhhhhc
Q 029271          134 IRVPLLSEDWSEDD-VINSIR  153 (196)
Q Consensus       134 IgvP~~~~~~~G~D-LlS~lq  153 (196)
                      |-+  .+..++|.| |..+.+
T Consensus        65 Vfi--~g~~iGG~ddl~~l~~   83 (99)
T TIGR02189        65 VFV--GGKLVGGLENVMALHI   83 (99)
T ss_pred             EEE--CCEEEcCHHHHHHHHH
Confidence            843  345678888 888776

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK10481 hypothetical protein; Provisional

Probab=87.57  E-value=5.4  Score=34.79  Aligned_cols=80  Identities=14%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEccc-CCchHHHHHHHHHhhCCCe-EEEEecCCCCchhHhhhhccC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIK-IIIVGDGVEAHLSGVAAANSQ  130 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaH-R~p~~~~~~~~~~e~~~~~-V~IavAG~sa~L~gvvA~~t~  130 (196)
                      .+++|++=...   -.++..+-..++|++..+...|.+ -+++.+.+..++....|++ ||+.++|++......+.-.+.
T Consensus       130 ~riGVitP~~~---qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg  206 (224)
T PRK10481        130 HQVGVIVPVEE---QLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALD  206 (224)
T ss_pred             CeEEEEEeCHH---HHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHC
Confidence            58999986533   333444444555888778777764 4444777788888778884 889999999888999999999


Q ss_pred             CcEEE
Q 029271          131 ILVIR  135 (196)
Q Consensus       131 ~PVIg  135 (196)
                      +|||-
T Consensus       207 ~PVI~  211 (224)
T PRK10481        207 VPVLL  211 (224)
T ss_pred             cCEEc
Confidence            99983

>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators

Probab=87.43  E-value=18  Score=31.25  Aligned_cols=111  Identities=12%  Similarity=0.203  Sum_probs=69.0

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCe-EEEEecCCC-CchhHhhhh
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIVGDGVE-AHLSGVAAA  127 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~-V~IavAG~s-a~L~gvvA~  127 (196)
                      +.|++|.-..++-   +.++.+.+.+++.|.  .+-++.....++.- ++++.+.++.++ +|++....+ .+|--....
T Consensus         2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy--~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~   78 (279)
T PF00532_consen    2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGY--QLLLCNTGDDEEKE-EYIELLLQRRVDGIILASSENDDEELRRLIKS   78 (279)
T ss_dssp             CEEEEEESSSTSHHHHHHHHHHHHHHHHTTC--EEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHT
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHHcCC--EEEEecCCCchHHH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHc
Confidence            5789999998886   445566777778876  66777888888877 999999888885 555532222 234444433


Q ss_pred             ccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccC
Q 029271          128 NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA  182 (196)
Q Consensus       128 ~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~  182 (196)
                        ..||+-+=-....            |.++|+..+  ||-.++-.++-.++...
T Consensus        79 --~iPvV~~~~~~~~------------~~~~~~V~~--D~~~a~~~a~~~Li~~G  117 (279)
T PF00532_consen   79 --GIPVVLIDRYIDN------------PEGVPSVYI--DNYEAGYEATEYLIKKG  117 (279)
T ss_dssp             --TSEEEEESS-SCT------------TCTSCEEEE--EHHHHHHHHHHHHHHTT
T ss_pred             --CCCEEEEEeccCC------------cccCCEEEE--cchHHHHHHHHHHHhcc
Confidence              6888876544321            235554443  65554444444444443

The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=87.41  E-value=6.2  Score=32.57  Aligned_cols=84  Identities=12%  Similarity=0.212  Sum_probs=57.2

Q ss_pred             eEEEEEcCCCCH---HHHHHHHHHHHHh---CCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-
Q 029271           54 IVGIIMESDLDL---PVMNDAARTLSDF---GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  126 (196)
Q Consensus        54 ~V~IimGS~SD~---~~~~~~~~~l~~~---gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-  126 (196)
                      +|+++....+|.   ...+.+.+.++++   |..+++.+....-.++...+.++.+..++++.||........+...+. 
T Consensus         1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~   80 (272)
T cd06300           1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEE   80 (272)
T ss_pred             CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence            466777555542   3455666777888   887788887666677888888888888888877777655444444332 


Q ss_pred             -hccCCcEEEec
Q 029271          127 -ANSQILVIRVP  137 (196)
Q Consensus       127 -~~t~~PVIgvP  137 (196)
                       ..-..|||.+-
T Consensus        81 ~~~~~iPvv~~~   92 (272)
T cd06300          81 ACEAGIPVVSFD   92 (272)
T ss_pred             HHHCCCeEEEEe
Confidence             23567999864

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators

Probab=87.28  E-value=14  Score=29.95  Aligned_cols=78  Identities=12%  Similarity=0.079  Sum_probs=49.9

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  129 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t  129 (196)
                      |+++.-+.++   ....+.+.+.++++|+  ++.+......+++..++++.+...+++-+|.......  ...+.  -..
T Consensus         2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~   77 (268)
T cd01575           2 VAVLVPSLSNSVFADVLQGISDVLEAAGY--QLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT--ERTRQLLRAA   77 (268)
T ss_pred             EEEEeCCCcchhHHHHHHHHHHHHHHcCC--EEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHhc
Confidence            4555544333   3445677788889985  5555666777888888888888888876666554332  22332  234


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||.+
T Consensus        78 ~ipvv~~   84 (268)
T cd01575          78 GIPVVEI   84 (268)
T ss_pred             CCCEEEE
Confidence            6799877

This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=87.21  E-value=15  Score=30.15  Aligned_cols=83  Identities=13%  Similarity=0.159  Sum_probs=49.6

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  128 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~  128 (196)
                      ||+|+....+|   ....+.+.+.+++.|....+.-......+++..++++++...+++-+|............+.-  .
T Consensus         1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~   80 (273)
T cd06310           1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD   80 (273)
T ss_pred             CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHH
Confidence            57888765444   233455667777888644333221256888888888887777787555544333323334333  3


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      ...|||.+
T Consensus        81 ~~ipvV~~   88 (273)
T cd06310          81 AGIPVVLI   88 (273)
T ss_pred             CCCCEEEe
Confidence            45788876

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=86.98  E-value=5.6  Score=27.31  Aligned_cols=32  Identities=19%  Similarity=0.106  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL   87 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~   87 (196)
                      +|.+.+-+  .=+.|+++++.|++.||+|+..=.
T Consensus         2 ~v~ly~~~--~C~~C~ka~~~L~~~gi~~~~~di   33 (73)
T cd03027           2 RVTIYSRL--GCEDCTAVRLFLREKGLPYVEINI   33 (73)
T ss_pred             EEEEEecC--CChhHHHHHHHHHHCCCceEEEEC
Confidence            34444443  348999999999999999986644

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation

Probab=86.85  E-value=16  Score=29.94  Aligned_cols=78  Identities=10%  Similarity=0.110  Sum_probs=51.0

Q ss_pred             EEEEEcCCC---CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271           55 VGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  129 (196)
Q Consensus        55 V~IimGS~S---D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t  129 (196)
                      |+|+.-+.+   .....+.+.+.++++|+  ++-+......++...++++....++++.+|........  ..+.  ..-
T Consensus         2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~   77 (270)
T cd06296           2 IGLVFPDLDSPWASEVLRGVEEAAAAAGY--DVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTS--AQRAALRRT   77 (270)
T ss_pred             eEEEECCCCCccHHHHHHHHHHHHHHcCC--eEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCCh--HHHHHHhcC
Confidence            566664433   45666778888888885  66667777778777788888888888866665543221  2222  234


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||.+
T Consensus        78 ~ipvV~i   84 (270)
T cd06296          78 GIPFVVV   84 (270)
T ss_pred             CCCEEEE
Confidence            5688775

This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis

Probab=86.23  E-value=6.4  Score=32.52  Aligned_cols=84  Identities=17%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  128 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~  128 (196)
                      +|+++.-+.+|   ....+.+.+.+++.|+...+..+.....++.-.+.++.+...+++.+|.....+..+...+..  .
T Consensus         1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~   80 (275)
T cd06320           1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK   80 (275)
T ss_pred             CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHH
Confidence            36777766555   233456777788888765544444456777777788888788888766654433333333332  3


Q ss_pred             cCCcEEEec
Q 029271          129 SQILVIRVP  137 (196)
Q Consensus       129 t~~PVIgvP  137 (196)
                      -..|||.+-
T Consensus        81 ~~iPvV~~~   89 (275)
T cd06320          81 KGIPVVNVN   89 (275)
T ss_pred             CCCeEEEEC
Confidence            467998764

Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.

>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT

Probab=86.22  E-value=20  Score=30.51  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-cc
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NS  129 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-~t  129 (196)
                      +++++.-+.+|   ....+.+.+.++++|..+.+.-......+++..++++.+.+++++-||..+.....+...+.. ..
T Consensus         1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~   80 (295)
T TIGR02955         1 KLCALYPHLKDSYWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQLTK   80 (295)
T ss_pred             CeeEEecCCCcHHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHHhc
Confidence            35666665555   333446667778888755443222234667777888888888997666555433333333322 23


Q ss_pred             CCcEEE
Q 029271          130 QILVIR  135 (196)
Q Consensus       130 ~~PVIg  135 (196)
                      ..||+-
T Consensus        81 ~iPvV~   86 (295)
T TIGR02955        81 SIPVFA   86 (295)
T ss_pred             CCCEEE
Confidence            678774

Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=86.19  E-value=13  Score=30.17  Aligned_cols=78  Identities=12%  Similarity=0.098  Sum_probs=50.0

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--cc
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS  129 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~t  129 (196)
                      |+|+....++   ....+.+.+.++++|..  +-+...+..+++..++++++.+.+++.+|....-. . ...+..  ..
T Consensus         2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~-~-~~~~~~~~~~   77 (259)
T cd01542           2 IGVIVPRLDSFSTSRTVKGILAALYENGYQ--MLLMNTNFSIEKEIEALELLARQKVDGIILLATTI-T-DEHREAIKKL   77 (259)
T ss_pred             eEEEecCCccchHHHHHHHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-C-HHHHHHHhcC
Confidence            6677755443   34566677778888854  45555677888888888888888898777654321 1 122222  23


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||.+
T Consensus        78 ~ipvv~~   84 (259)
T cd01542          78 NVPVVVV   84 (259)
T ss_pred             CCCEEEE
Confidence            5788876

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>PRK00861 putative lipid kinase; Reviewed

Probab=85.58  E-value=3.5  Score=36.10  Aligned_cols=74  Identities=23%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC-CcEEEecC
Q 029271           60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ-ILVIRVPL  138 (196)
Q Consensus        60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~-~PVIgvP~  138 (196)
                      |+.+.....+++...|++ +++|++..+...   ....++++++...+.+++| ++|+.+.|..|+.+... -|-+|+=|
T Consensus        14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~---~~a~~~a~~~~~~~~d~vv-~~GGDGTl~evv~~l~~~~~~lgviP   88 (300)
T PRK00861         14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPE---IGADQLAQEAIERGAELII-ASGGDGTLSAVAGALIGTDIPLGIIP   88 (300)
T ss_pred             CCCchhhhHHHHHHHHHh-cCceEEEEccCC---CCHHHHHHHHHhcCCCEEE-EECChHHHHHHHHHHhcCCCcEEEEc
Confidence            444555667788888887 578888887654   4456667777667777766 57889999999988743 23355433

>PRK10014 DNA-binding transcriptional repressor MalI; Provisional

Probab=85.54  E-value=23  Score=30.50  Aligned_cols=82  Identities=10%  Similarity=0.166  Sum_probs=52.9

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  126 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--  126 (196)
                      ...|+++..+.++   ....+.+.+.+++.|.  .+-+......++...++++.+...+++-||....... ....+.  
T Consensus        64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~~l  140 (342)
T PRK10014         64 SGVIGLIVRDLSAPFYAELTAGLTEALEAQGR--MVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGS-SDDLREMA  140 (342)
T ss_pred             CCEEEEEeCCCccchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-cHHHHHHH
Confidence            3478998876544   3344566777888885  5555566777888888888888888876666554332 223332  


Q ss_pred             hccCCcEEEe
Q 029271          127 ANSQILVIRV  136 (196)
Q Consensus       127 ~~t~~PVIgv  136 (196)
                      .....|||-+
T Consensus       141 ~~~~iPvV~~  150 (342)
T PRK10014        141 EEKGIPVVFA  150 (342)
T ss_pred             hhcCCCEEEE
Confidence            2345788876

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=85.43  E-value=13  Score=31.46  Aligned_cols=80  Identities=13%  Similarity=0.260  Sum_probs=53.1

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  129 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t  129 (196)
                      |+++..+.+|   ....+.+.+.++++|+.  +.+......+++..++++++...+++.||..+.-...+...+.  ..-
T Consensus         2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~   79 (288)
T cd01538           2 IGLSLPTKTEERWIRDRPNFEAALKELGAE--VIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADA   79 (288)
T ss_pred             eEEEEeCCCcHHHHHHHHHHHHHHHHcCCE--EEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHC
Confidence            6777766555   23445677778888864  5556666778888888888888889877776544333334432  234


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||.+
T Consensus        80 ~ipvV~~   86 (288)
T cd01538          80 GIPVIAY   86 (288)
T ss_pred             CCCEEEE
Confidence            6788876

Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=85.29  E-value=6  Score=28.93  Aligned_cols=53  Identities=30%  Similarity=0.367  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCch
Q 029271           66 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL  121 (196)
Q Consensus        66 ~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L  121 (196)
                      ...+++.+.++++|++++..+...+...+.+.++   .+..+++++|.+......+
T Consensus        56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~---a~~~~~dlIV~G~~~~~~~  108 (132)
T cd01988          56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRT---AKERQADLIIMGWHGSTSL  108 (132)
T ss_pred             HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHH---HHhcCCCEEEEecCCCCCc
Confidence            3444556666678999887776545433455554   4456788888877766654

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=85.20  E-value=3.5  Score=29.75  Aligned_cols=41  Identities=24%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHH
Q 029271           61 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS  102 (196)
Q Consensus        61 S~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~  102 (196)
                      +.++=|+|.++++.|++.|++|+......|.. ++..+++++
T Consensus         7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~   47 (80)
T COG0695           7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKR   47 (80)
T ss_pred             ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHH
Confidence            45568999999999999999999988776665 555566553

>TIGR02180 GRX_euk Glutaredoxin

Probab=85.19  E-value=3.6  Score=28.26  Aligned_cols=69  Identities=17%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--eEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecC
Q 029271           61 SDLDLPVMNDAARTLSDFGVP--YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL  138 (196)
Q Consensus        61 S~SD~~~~~~~~~~l~~~gi~--~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~  138 (196)
                      +.+.=|.|+++...|++++++  |++--.......+.+.+++.+.                      .+..+.|+|-  .
T Consensus         5 ~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~----------------------~g~~~vP~v~--i   60 (84)
T TIGR02180         5 SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEI----------------------TGQRTVPNIF--I   60 (84)
T ss_pred             ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHH----------------------hCCCCCCeEE--E
Confidence            356779999999999999998  7665555555556655554432                      2334566663  2


Q ss_pred             CCCCCChhh-hhhhhc
Q 029271          139 LSEDWSEDD-VINSIR  153 (196)
Q Consensus       139 ~~~~~~G~D-LlS~lq  153 (196)
                      .+..++|.| +..+.+
T Consensus        61 ~g~~igg~~~~~~~~~   76 (84)
T TIGR02180        61 NGKFIGGCSDLLALYK   76 (84)
T ss_pred             CCEEEcCHHHHHHHHH
Confidence            334467777 777766

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=84.79  E-value=20  Score=29.38  Aligned_cols=80  Identities=11%  Similarity=0.172  Sum_probs=51.7

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC---CCchhHhhhh-
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV---EAHLSGVAAA-  127 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~---sa~L~gvvA~-  127 (196)
                      |++++.+..+   ....+.+.+.++++|.  ++-+......++.-.++++...+.+++-+|.....   ...+...+.- 
T Consensus         2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~   79 (273)
T cd06292           2 VGLLVPELSNPIFPAFAEAIEAALAQYGY--TVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERL   79 (273)
T ss_pred             EEEEeCCCcCchHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHH
Confidence            5667654433   3345677788888885  55667777788888888888888888766654322   1233333433 


Q ss_pred             -ccCCcEEEe
Q 029271          128 -NSQILVIRV  136 (196)
Q Consensus       128 -~t~~PVIgv  136 (196)
                       ....||+.+
T Consensus        80 ~~~~ipvV~i   89 (273)
T cd06292          80 AERGLPVVLV   89 (273)
T ss_pred             HhCCCCEEEE
Confidence             356788876

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=84.78  E-value=3  Score=27.60  Aligned_cols=44  Identities=18%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCC
Q 029271           63 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI  108 (196)
Q Consensus        63 SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~  108 (196)
                      ..=++|+++++.|++.|++|+..=.+-+.  +...++.+.......
T Consensus         7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~   50 (60)
T PF00462_consen    7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTV   50 (60)
T ss_dssp             TTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSS
T ss_pred             CCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCcc
Confidence            56689999999999999998776555543  444444443333344

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]

Probab=84.15  E-value=5.6  Score=35.54  Aligned_cols=76  Identities=13%  Similarity=0.165  Sum_probs=58.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc--cCCcEEEec
Q 029271           60 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVP  137 (196)
Q Consensus        60 GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~--t~~PVIgvP  137 (196)
                      |-...-.+.+++.+.|++.|..+++++....   ....++++++...+++.+|+ +|+.+.+.-|+.++  +..|.+|+=
T Consensus        14 G~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via-~GGDGTv~evingl~~~~~~~Lgil   89 (301)
T COG1597          14 GKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIA-AGGDGTVNEVANGLAGTDDPPLGIL   89 (301)
T ss_pred             cccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHhcCCCCceEEe
Confidence            4344567788999999999999999988665   78888999888888887776 57788888888886  555645544


Q ss_pred             CC
Q 029271          138 LL  139 (196)
Q Consensus       138 ~~  139 (196)
                      |.
T Consensus        90 P~   91 (301)
T COG1597          90 PG   91 (301)
T ss_pred             cC
Confidence            43

>PRK10703 DNA-binding transcriptional repressor PurR; Provisional

Probab=83.87  E-value=27  Score=30.06  Aligned_cols=81  Identities=11%  Similarity=0.185  Sum_probs=52.3

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  127 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-  127 (196)
                      +..|+++..+.+|   ....+.+.+.++++|  |++.+...+..+++..++++.+...+++-||...+...  ...+.- 
T Consensus        59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~~~l  134 (341)
T PRK10703         59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP--EPLLAML  134 (341)
T ss_pred             CCeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC--HHHHHHH
Confidence            3478888865444   234466777778888  45667777888888888888888888876665554211  122222 


Q ss_pred             -c-cCCcEEEe
Q 029271          128 -N-SQILVIRV  136 (196)
Q Consensus       128 -~-t~~PVIgv  136 (196)
                       . ...||+-+
T Consensus       135 ~~~~~iPvV~~  145 (341)
T PRK10703        135 EEYRHIPMVVM  145 (341)
T ss_pred             HhcCCCCEEEE
Confidence             2 45688765

>TIGR01481 ccpA catabolite control protein A

Probab=83.26  E-value=28  Score=29.74  Aligned_cols=82  Identities=12%  Similarity=0.154  Sum_probs=49.7

Q ss_pred             CCeEEEEEcCCCCHH---HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhh
Q 029271           52 APIVGIIMESDLDLP---VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAA  127 (196)
Q Consensus        52 ~~~V~IimGS~SD~~---~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~  127 (196)
                      +..|++++...++.-   ..+.+.+.+++.|.  ++-+...+..++...++++.+...+++-+|..... +..+--.+ .
T Consensus        59 ~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~--~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l-~  135 (329)
T TIGR01481        59 TTTVGVIIPDISNIYYAELARGIEDIATMYKY--NIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEF-S  135 (329)
T ss_pred             CCEEEEEeCCCCchhHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHH-H
Confidence            457999997655522   23455566677774  66667777778887788887777788655544321 22221222 2


Q ss_pred             ccCCcEEEe
Q 029271          128 NSQILVIRV  136 (196)
Q Consensus       128 ~t~~PVIgv  136 (196)
                      ...+||+-+
T Consensus       136 ~~~iPvV~~  144 (329)
T TIGR01481       136 RSPVPVVLA  144 (329)
T ss_pred             hcCCCEEEE
Confidence            346788765

Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.

>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=82.18  E-value=26  Score=28.62  Aligned_cols=108  Identities=19%  Similarity=0.173  Sum_probs=61.5

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-ccC
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQ  130 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-~t~  130 (196)
                      |+++.-+.+|   ....+.+.+.++++|.  .+-+...+-.+++..++++.+.+.+++-+|........  ..+.. ...
T Consensus         2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~   77 (265)
T cd06290           2 IGVLTQDFASPFYGRILKGMERGLNGSGY--SPIIATGHWNQSRELEALELLKSRRVDALILLGGDLPE--EEILALAEE   77 (265)
T ss_pred             EEEEECCCCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCh--HHHHHHhcC
Confidence            5666654443   2345567778888985  45555567788888889999988889766655443211  11111 235


Q ss_pred             CcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 029271          131 ILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI  181 (196)
Q Consensus       131 ~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~  181 (196)
                      .|||-+=....             .++  +.-|++|+...+...+-.++..
T Consensus        78 iPvV~i~~~~~-------------~~~--~~~V~~d~~~a~~~~~~~l~~~  113 (265)
T cd06290          78 IPVLAVGRRVP-------------GPG--AASIAVDNFQGGYLATQHLIDL  113 (265)
T ss_pred             CCEEEECCCcC-------------CCC--CCEEEECcHHHHHHHHHHHHHC
Confidence            78876522110             012  2345667766655555555533

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins

Probab=82.05  E-value=21  Score=33.25  Aligned_cols=85  Identities=19%  Similarity=0.115  Sum_probs=52.3

Q ss_pred             CeEEEEEcCCC---CH------HHHHHHHHHHHHhCCCeEEEEEccc-CCchHHHHHHHHHhhCCCeEEEE--ecCCCCc
Q 029271           53 PIVGIIMESDL---DL------PVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIV--GDGVEAH  120 (196)
Q Consensus        53 ~~V~IimGS~S---D~------~~~~~~~~~l~~~gi~~ev~V~SaH-R~p~~~~~~~~~~e~~~~~V~Ia--vAG~sa~  120 (196)
                      ++|++++||..   ..      +..+++.+.|++.|+  ++-..+.= .++++..+..+.++..+++.+|.  ..+...+
T Consensus         1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~   78 (452)
T cd00578           1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPV--EVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAK   78 (452)
T ss_pred             CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCc--eEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHH
Confidence            36899999877   22      344455566666554  44333333 48888999999998888865555  3444444


Q ss_pred             hhHhhhhccCCcEEEecCC
Q 029271          121 LSGVAAANSQILVIRVPLL  139 (196)
Q Consensus       121 L~gvvA~~t~~PVIgvP~~  139 (196)
                      +-.-.+.....||+-.-+.
T Consensus        79 ~~~~~~~~~~~Pvll~a~~   97 (452)
T cd00578          79 MWIAGLSELRKPVLLLATQ   97 (452)
T ss_pred             HHHHHHHhcCCCEEEEeCC
Confidence            3333344568898765443

FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.

>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems

Probab=81.95  E-value=18  Score=29.89  Aligned_cols=81  Identities=19%  Similarity=0.282  Sum_probs=52.9

Q ss_pred             eEEEEEcCCCCH---HHHHHHHHHHHHh-CCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271           54 IVGIIMESDLDL---PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  127 (196)
Q Consensus        54 ~V~IimGS~SD~---~~~~~~~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--  127 (196)
                      +|+++.++.+|.   ...+.+.+.+++. |+  ++-+......++.-.++++++..++++.||........+...+..  
T Consensus         1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~   78 (270)
T cd06308           1 VIGFSQCNLADPWRAAMNDEIQREASNYPDV--ELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAY   78 (270)
T ss_pred             CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHH
Confidence            377888877772   4455666666765 65  455566667788888888888888888777665443333443332  


Q ss_pred             ccCCcEEEe
Q 029271          128 NSQILVIRV  136 (196)
Q Consensus       128 ~t~~PVIgv  136 (196)
                      ....||+.+
T Consensus        79 ~~~ipvV~~   87 (270)
T cd06308          79 RAGIPVILL   87 (270)
T ss_pred             HCCCCEEEe
Confidence            356788866

Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.

>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate

Probab=81.83  E-value=8.8  Score=39.14  Aligned_cols=86  Identities=19%  Similarity=0.169  Sum_probs=55.0

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---------------------------------cCC--chHHH
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---------------------------------HQN--CKEAL   97 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~Sa---------------------------------HR~--p~~~~   97 (196)
                      .+|+|++++ -|-|-|.-+....-.+++....+|.++                                 -|.  ++...
T Consensus       390 ~~IaIltsG-G~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~~~~~~~  468 (762)
T cd00764         390 LNIAIVNVG-APAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLPKKDLE  468 (762)
T ss_pred             cEEEEEecC-CCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCCcHHHHH
Confidence            489999976 688888877665543333221222222                                 233  35777


Q ss_pred             HHHHHHhhCCCeEEEEecCCCCchhH-hhhh------ccCCcEEEecCC
Q 029271           98 SYALSAKERGIKIIIVGDGVEAHLSG-VAAA------NSQILVIRVPLL  139 (196)
Q Consensus        98 ~~~~~~e~~~~~V~IavAG~sa~L~g-vvA~------~t~~PVIgvP~~  139 (196)
                      ++++++++.+++.+|.+.|-.+.-+. -++-      ...+|||++|-.
T Consensus       469 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkT  517 (762)
T cd00764         469 TIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPAT  517 (762)
T ss_pred             HHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEeccc
Confidence            88899999999999988776443222 1221      146999999975

The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=81.49  E-value=9.9  Score=26.49  Aligned_cols=59  Identities=24%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV  117 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~  117 (196)
                      .|.|+.-+..+.+.+.++...|+.-|+.+++-..  .+.+..-.++   ++..|+..+|.+...
T Consensus         3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~---a~~~g~~~~iiig~~   61 (91)
T cd00860           3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIRE---AQLQKIPYILVVGDK   61 (91)
T ss_pred             EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHH---HHHcCCCEEEEECcc
Confidence            5777877788899999999999999998877543  3555555544   456788766666544

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function

Probab=81.44  E-value=6.1  Score=34.27  Aligned_cols=51  Identities=22%  Similarity=0.433  Sum_probs=43.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchH-----------HHHHHHHHhhCCCeEEE
Q 029271           62 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE-----------ALSYALSAKERGIKIII  112 (196)
Q Consensus        62 ~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~-----------~~~~~~~~e~~~~~V~I  112 (196)
                      .+|++.++++.+.|.+.|||+-+-|+.-|..|..           +.++++.++.+|-.|+.
T Consensus        12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l   73 (243)
T PF10096_consen   12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL   73 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence            5999999999999999999999999999887765           44566777788877765

>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=81.22  E-value=29  Score=28.50  Aligned_cols=78  Identities=10%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC--CCchhHhhhhcc
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV--EAHLSGVAAANS  129 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~--sa~L~gvvA~~t  129 (196)
                      |+++..+.++   ....+.+.+.++++|+..  .+..-...++.-.++++.+...+++-+|...-.  +..+.....  .
T Consensus         2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v--~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~--~   77 (269)
T cd06293           2 IGLVVPDIANPFFAELADAVEEEADARGLSL--VLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLIN--S   77 (269)
T ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEE--EEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHh--c
Confidence            6777765444   356778888889999654  444444567777888888888888755554321  122333332  3


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||-+
T Consensus        78 ~~pvV~i   84 (269)
T cd06293          78 YGNIVLV   84 (269)
T ss_pred             CCCEEEE
Confidence            4677765

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria

Probab=81.01  E-value=28  Score=28.22  Aligned_cols=79  Identities=9%  Similarity=0.084  Sum_probs=47.4

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      |+++.-..+|   ....+.+.+.++++|+..  .+...-..++...++++.....+++.+|...+..... -.-.-....
T Consensus         2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~~~~~~~~i   78 (267)
T cd06284           2 ILVLVPDIANPFFSEILKGIEDEAREAGYGV--LLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPPT-ALTALAKLP   78 (267)
T ss_pred             EEEEECCCCCccHHHHHHHHHHHHHHcCCeE--EEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCHH-HHHHHhcCC
Confidence            4555533333   445577888888999654  4444445677777888888888887666654432211 111222367


Q ss_pred             cEEEe
Q 029271          132 LVIRV  136 (196)
Q Consensus       132 PVIgv  136 (196)
                      |||.+
T Consensus        79 pvv~~   83 (267)
T cd06284          79 PIVQA   83 (267)
T ss_pred             CEEEE
Confidence            99876

This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional

Probab=80.89  E-value=15  Score=27.41  Aligned_cols=71  Identities=15%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             eEEEEEcCCCCHHHH--HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           54 IVGIIMESDLDLPVM--NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        54 ~V~IimGS~SD~~~~--~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      +|.++||+--=-..+  +++++.|++.|+++++.=++.    .++..++     +.+++||+..-....       ....
T Consensus         4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~----~e~~~~~-----~~~D~iv~t~~~~~~-------~~~i   67 (94)
T PRK10310          4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRV----NEIETYM-----DGVHLICTTARVDRS-------FGDI   67 (94)
T ss_pred             eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecH----HHHhhhc-----CCCCEEEECCccccc-------cCCC
Confidence            688999876655555  899999999999988764444    3333222     346888775532221       2257


Q ss_pred             cE-EEecCCC
Q 029271          132 LV-IRVPLLS  140 (196)
Q Consensus       132 PV-IgvP~~~  140 (196)
                      || .+.|..+
T Consensus        68 p~~~~~~llt   77 (94)
T PRK10310         68 PLVHGMPFVS   77 (94)
T ss_pred             CEEEEeeccc
Confidence            74 4445544

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria

Probab=80.75  E-value=29  Score=28.18  Aligned_cols=80  Identities=15%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             EEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh-hhccC
Q 029271           55 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-AANSQ  130 (196)
Q Consensus        55 V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv-A~~t~  130 (196)
                      |+++....+|   ....+.+.+.++++|..  +.+.+....++...++++++...+++-+|..+...+....+- +-.-.
T Consensus         2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~   79 (268)
T cd06289           2 IGLVINDLTNPFFAELAAGLEEVLEEAGYT--VFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESG   79 (268)
T ss_pred             EEEEecCCCcchHHHHHHHHHHHHHHcCCe--EEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcC
Confidence            5666654333   33445666778889864  455555567888888888888888886666665444444221 22346


Q ss_pred             CcEEEe
Q 029271          131 ILVIRV  136 (196)
Q Consensus       131 ~PVIgv  136 (196)
                      .|||.+
T Consensus        80 ipvV~~   85 (268)
T cd06289          80 IPVVLV   85 (268)
T ss_pred             CCEEEE
Confidence            788875

This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PRK09526 lacI lac repressor; Reviewed

Probab=80.70  E-value=36  Score=29.26  Aligned_cols=84  Identities=8%  Similarity=0.090  Sum_probs=48.7

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhh
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAA  127 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~  127 (196)
                      +..|++++.+.++   ....+.+.+.++++|..+.+. .+-+..++...++++.+...+++-+|..... +..+.-+..-
T Consensus        63 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~-~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~~  141 (342)
T PRK09526         63 SLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVIS-MVERSGVEACQAAVNELLAQRVSGVIINVPLEDADAEKIVAD  141 (342)
T ss_pred             CceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEE-eCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHhh
Confidence            4579999976554   245667778888888655443 2222334556677777877888655543222 2223233322


Q ss_pred             ccCCcEEEe
Q 029271          128 NSQILVIRV  136 (196)
Q Consensus       128 ~t~~PVIgv  136 (196)
                      ....||+-+
T Consensus       142 ~~~iPvV~~  150 (342)
T PRK09526        142 CADVPCLFL  150 (342)
T ss_pred             cCCCCEEEE
Confidence            235777754

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=80.49  E-value=3.7  Score=39.32  Aligned_cols=52  Identities=12%  Similarity=0.021  Sum_probs=46.0

Q ss_pred             cccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhhhhc--cCCcEEEecCC
Q 029271           88 PPHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAAN--SQILVIRVPLL  139 (196)
Q Consensus        88 SaHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvvA~~--t~~PVIgvP~~  139 (196)
                      -.|++.+.+.++.+.+.+.++   +++||+.|+ ..-++|++|+.  --.|.|.||+.
T Consensus       215 e~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTT  272 (488)
T PRK13951        215 EEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTT  272 (488)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCcc
Confidence            379999999999999999999   899999888 56799999985  67899999986

>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily

Probab=80.17  E-value=16  Score=30.40  Aligned_cols=80  Identities=14%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  128 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~  128 (196)
                      +|++++.+.+|   ....+.+.+.++++|..  +.+.... .+++..+.++++...+++-+|..+.........+-.  .
T Consensus         1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~   77 (289)
T cd01540           1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFT--VVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKA   77 (289)
T ss_pred             CeeeecCCCCCcHHHHHHHHHHHHHHHcCCE--EEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHh
Confidence            46777776555   23345567788888864  5555555 677777788888788887666654332223333332  3


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      ...|||.+
T Consensus        78 ~~iPvV~~   85 (289)
T cd01540          78 YNMKVVAV   85 (289)
T ss_pred             CCCeEEEe
Confidence            56799876

Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=80.08  E-value=32  Score=28.31  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             EEEEEcC---CCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271           55 VGIIMES---DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  129 (196)
Q Consensus        55 V~IimGS---~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t  129 (196)
                      |+|+..+   .......+.+.+.++++|..+  -+......++...+.++.+...+++-+|...+.... ...+.  -.-
T Consensus         2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~-~~~~~~~~~~   78 (269)
T cd06281           2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYSL--LIANSLNDPERELEILRSFEQRRMDGIIIAPGDERD-PELVDALASL   78 (269)
T ss_pred             EEEEecCCccccHHHHHHHHHHHHHHcCCEE--EEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCc-HHHHHHHHhC
Confidence            5566543   445566677888888998754  444456678888888888888888766665543322 33322  223


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..|||-+
T Consensus        79 ~ipvV~i   85 (269)
T cd06281          79 DLPIVLL   85 (269)
T ss_pred             CCCEEEE
Confidence            5787765

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
1o4v_A	183	Crystal Structure Of The Catalytic Subunit Of A Pho		1e-26
3lp6_A	174	Crystal Structure Of Rv3275c-E60a From Mycobacteriu		2e-21
4b4k_A	181	Crystal Structure Of Bacillus Anthracis Pure Length		3e-18
1xmp_A	170	Crystal Structure Of Pure (Ba0288) From Bacillus An		4e-18
3opq_A	163	Phosphoribosylaminoimidazole Carboxylase With Fruct		5e-16
3oow_A	166	Octameric Structure Of The Phosphoribosylaminoimida		5e-16
4grd_A	173	Crystal Structure Of Phosphoribosylaminoimidazole C		2e-14
1u11_A	182	Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutas		3e-14
2fw1_A	183	Structure Of Pure (n5-carboxyaminoimidazole Ribonuc		3e-14
2fwa_A	183	Structure Of Pure (n5-carboxyaminoimidazole Ribonuc		3e-13
2fw6_A	183	Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc		3e-13
2fwb_A	183	Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc		4e-13
2fw9_A	183	Structure Of Pure (n5-carboxyaminoimidazole Ribonuc		4e-13
2fwi_A	183	Structure Of Pure (n5-carboxyaminoimidazole Ribonuc		5e-13
2ywx_A	157	Crystal Structure Of Phosphoribosylaminoimidazole C		4e-12
2fw8_A	183	Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc		1e-10
3ors_A	163	Crystal Structure Of N5-Carboxyaminoimidazole Ribon		2e-10
2nsl_A	169	E. Coli Pure H45n Mutant Complexed With Cair Length		1e-09
2nsh_A	169	E. Coli Pure H45q Mutant Complexed With Nitro-Air L		1e-09
2h31_A	425	Crystal Structure Of Human Paics, A Bifunctional Ca		5e-09
3rg8_A	159	Crystal Structure Of Treponema Denticola Pure Lengt		1e-08
3rgg_A	159	Crystal Structure Of Treponema Denticola Pure Bound		2e-08
1qcz_A	169	Crystal Structure Of E. Coli Pure, An Unusual Mutas		5e-08
2ate_A	169	Structure Of The Complex Of Pure With Nitroair Leng		5e-08
1d7a_A	161	Crystal Structure Of E. Coli Pure-Mononucleotide Co		6e-08
3kuu_A	174	Structure Of The Pure Phosphoribosylaminoimidazole		6e-08
3trh_A	169	Structure Of A Phosphoribosylaminoimidazole Carboxy		3e-06

>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A Phosphoribosylaminoimidazole Mutase (Tm0446) From Thermotoga Maritima At 1.77 A Resolution Length = 183

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA +A+ERGI++II
Sbjct: 14  PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73
Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVPRNNAKNA 171
            G G  AHL G+ A+ + + VI VP+ +   +  D + + ++MP  V VA+V  NNAKNA
Sbjct: 74  AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 133
Query: 172 ALYAVKVLGIADEDLLERIRKYVE 195
            + A  +LGI   ++  ++++Y E
Sbjct: 134 GILAASILGIKYPEIARKVKEYKE 157

>pdb|3LP6|A Chain A, Crystal Structure Of Rv3275c-E60a From Mycobacterium Tubercu 1.7a Resolution Length = 174

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           A + P VG+IM SD D PVM DAA  L++F +P E++++  H+  +   SYA  A  RG+
Sbjct: 4   AGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGL 63
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNN 167
           ++II G G  AHL G+ AA + + VI VP+ L      D +++ ++MP+ V VA+V    
Sbjct: 64  EVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGG 123
Query: 168 AKNAALYAVKVLGIADEDLLERIRKY 193
           A NA L AV++LG A+  L  RI  +
Sbjct: 124 AGNAGLLAVRMLGAANPQLRARIVAF 149

>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure Length = 181

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 54  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113
           +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+K+II 
Sbjct: 24  LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 83
Query: 114 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVP--RNNAKN 170
           G G  AHL G+ AA + + VI VP+ S+  +  D +++ ++MP  V VA+V   +  + N
Sbjct: 84  GAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 143
Query: 171 AALYAVKVLGIADEDL---LERIRKYVEE 196
           A L A ++LG   +D+   LE  R+ +E+
Sbjct: 144 AGLLAAQILGSFHDDIHDALELRREAIEK 172

>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis At 1.8 Resolution Length = 170

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 54  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113
           +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+K+II 
Sbjct: 13  LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 72
Query: 114 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVP--RNNAKN 170
           G G  AHL G+ AA + + VI VP+ S+  +  D +++ ++MP  V VA+V   +  + N
Sbjct: 73  GAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 132
Query: 171 AALYAVKVLGIADEDL---LERIRKYVEE 196
           A L A ++LG   +D+   LE  R+ +E+
Sbjct: 133 AGLLAAQILGSFHDDIHDALELRREAIEK 161

>pdb|3OPQ|A Chain A, Phosphoribosylaminoimidazole Carboxylase With Fructose-6-Phosphate Bound To The Central Channel Of The Octameric Protein Structure. Length = 163

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           VG+I  S  D     +    L + G+ YE +++  H+   +   YA +AKERG+K+II G
Sbjct: 5   VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 64
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPRNNAKNA 171
            G  AHL G  AA + + V+ VP+ S     +D +++ ++ P+ + VA+  +    AKNA
Sbjct: 65  AGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIPVATFAIGXAGAKNA 124
Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
           AL+A  +L   D ++ + + ++  E
Sbjct: 125 ALFAASILQHTDINIAKALAEFRAE 149

>pdb|3OOW|A Chain A, Octameric Structure Of The Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Francisella Tularensis Subsp. Tularensis Schu S4. Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           VG+I  S  D     +    L + G+ YE +++  H+   +   YA +AKERG+K+II G
Sbjct: 8   VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 67
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVAS--VPRNNAKNA 171
            G  AHL G  AA + + V+ VP+ S   + +D +++ ++ P+ + VA+  +    AKNA
Sbjct: 68  AGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIPVATFAIGXAGAKNA 127
Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
           AL+A  +L   D ++ + + ++  E
Sbjct: 128 ALFAASILQHTDINIAKALAEFRAE 152

>pdb|4GRD|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Burkholderia Cenocepacia J2315 Length = 173

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 52  APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 111
           AP+VG++M S  D  VM  A   L +FGVPYE K++  H+   E   YA  A+ERG++ I
Sbjct: 12  APLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAI 71
Query: 112 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVAS 162
           I G G  AHL G+ AA + + V+ VP+ S+     D ++SI +MP  V VA+
Sbjct: 72  IAGAGGAAHLPGMLAAKTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVAT 123

>pdb|1U11|A Chain A, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From The Acidophile Acetobacter Aceti Length = 182

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           AA AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 18  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 77
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 78  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 137
Query: 166 NNAKN 170
           + AKN
Sbjct: 138 SGAKN 142

>pdb|2FW1|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8.5 Length = 183

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           AA AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FWA|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H89n From The Acidophilic Bacterium Acetobacter Aceti, At Ph 7 Length = 183

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           AA AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
            +II G G  A+L G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAANLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FW6|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) Mutant H59n From The Acidophilic Bacterium Acetobacter Aceti, At Ph 5.4 Length = 183

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           AA AP+VGIIM S  D   M  A   L++  +P+E  I+  ++       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) H89f From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           AA AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
            +II G G  A L G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAFLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FW9|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H59f From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           AA AP+VGIIM S  D   M  A   L++  +P+E  I+   +       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAFRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2FWI|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H59d, From The Acidophilic Bacterium Acetobacter Aceti, Complexed With 5-aminoimidazole Ribonucleotide (air) Length = 183

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           AA AP+VGIIM S  D   M  A   L++  +P+E  I+   +       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSADRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
            +II G G  AHL G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
           + AKN
Sbjct: 139 SGAKN 143

>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Methanocaldococcus Jannaschii Length = 157

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 57  IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 116
           IIM S+ DL +   A   L +FGV +E+++   H+  +       ++K     + I   G
Sbjct: 4   IIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAG 60
Query: 117 VEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAV 176
           + AHL GV A+ +   VI VP+ ++    D +++S++MP  + VA+V  +  +NAA+ A+
Sbjct: 61  LAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILAL 120
Query: 177 KVLGIADEDLLERIRKYVEE 196
           ++L + DE++ +++ +Y E+
Sbjct: 121 EILALKDENIAKKLIEYREK 140

>pdb|2FW8|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) H89g From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           AA AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+
Sbjct: 19  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVAS--VPR 165
            +II G G  A L G+ AA +++ V+ VP+ S      D +++ ++MP  V V +  +  
Sbjct: 79  NVIIAGAGGAAGLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 166 NNAKN 170
           + AKN
Sbjct: 139 SGAKN 143

>pdb|3ORS|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Ribonucleotide Mutase From Staphylococcus Aureus Length = 163

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 85/147 (57%), Gaps = 3/147 (2%)
Query: 50  ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
           ++A  V +IM S  D  +M ++   L  F +PYE +++  H+  K  + +A  A+ERGI 
Sbjct: 1   SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQV--ASVPRN 166
           III G G  AHL G+ A+ + + VI VP+ ++     D +++ ++MP  + V   ++   
Sbjct: 61  IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAA 120
Query: 167 NAKNAALYAVKVLGIADEDLLERIRKY 193
            AKNA + A ++L I +  L+E++ +Y
Sbjct: 121 GAKNAGILAARMLSIQNPSLVEKLNQY 147

>pdb|2NSL|A Chain A, E. Coli Pure H45n Mutant Complexed With Cair Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           V I+M S  D   M  AA       VP+ ++++  ++   +  S+A SA+E G ++II G
Sbjct: 10  VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIAG 69
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 163
            G  AHL G+ AA + + V+ VP+ S   S  D + SI +MP  + V ++
Sbjct: 70  AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTL 119

>pdb|2NSH|A Chain A, E. Coli Pure H45q Mutant Complexed With Nitro-Air Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           V I+M S  D   M  AA       VP+ ++++   +   +  S+A SA+E G ++II G
Sbjct: 10  VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAQRTPDKLFSFAESAEENGYQVIIAG 69
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 163
            G  AHL G+ AA + + V+ VP+ S   S  D + SI +MP  + V ++
Sbjct: 70  AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTL 119

>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional Carboxylase And Synthetase In Purine Biosynthesis Length = 425

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 46  LLLAADAPI-VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 104
           LLL +++   V ++  S  DL       +   +FG+P E+++   H+   E L      +
Sbjct: 258 LLLKSESQCRVVVLXGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYE 317
Query: 105 ERGIKIIIVG-DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASV 163
             GI  + V   G    L  V + N+   VI  P L+ DW   DV +S+R+PS +  ++V
Sbjct: 318 GDGIPTVFVAVAGRSNGLGPVXSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTV 377
Query: 164 PRNNAKNAALYAVKVLGIADEDLLERIR 191
              + + +A +A ++ G+++  +  ++R
Sbjct: 378 L--SPEGSAQFAAQIFGLSNHLVWSKLR 403

>pdb|3RG8|A Chain A, Crystal Structure Of Treponema Denticola Pure Length = 159

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY--ALSAKERGIKI 110
           P+V I+M S  D+      A  L  FG+ Y I+I   H+  +  +S      A +R  K+
Sbjct: 3   PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRP-KL 61
Query: 111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 170
            I   G    LSG      +   I  P  S+ ++  D+ +S+RMPS +  A V     KN
Sbjct: 62  YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKN 119
Query: 171 AALYAVKVLGIADEDLLERIRKYVE 195
           AAL A ++  + D+++ + ++ Y+E
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYME 144

>pdb|3RGG|A Chain A, Crystal Structure Of Treponema Denticola Pure Bound To Air Length = 159

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY--ALSAKERGIKI 110
           P+V I+M S  D+      A  L  FG+ Y I+I   H+  +  +S      A +R  K+
Sbjct: 3   PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRP-KL 61
Query: 111 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 170
            I   G    LSG      +   I  P  S+ ++  D+ +S+RMPS +  A V     KN
Sbjct: 62  YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKN 119
Query: 171 AALYAVKVLGIADEDLLERIRKYVE 195
           AAL A ++  + D+++ + ++ Y+E
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYME 144

>pdb|1QCZ|A Chain A, Crystal Structure Of E. Coli Pure, An Unusual Mutase That Catalyzes The Conversion Of N5-carboxyaminoimidazole Ribonucleotide (n5-cair) To 4-carboxyaminoimidazole Ribonucleotide (cair) In The Purine Biosynthetic Pathway Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           V I+  S  D      AA       VP+ ++++  H+   +  S+A SA+E G ++II G
Sbjct: 10  VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 152
            G  AHL G  AA + + V+ VP+ S   S  D + SI
Sbjct: 70  AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 107

>pdb|2ATE|A Chain A, Structure Of The Complex Of Pure With Nitroair Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           V I+  S  D      AA       VP+ ++++  H+   +  S+A SA+E G ++II G
Sbjct: 10  VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 152
            G  AHL G  AA + + V+ VP+ S   S  D + SI
Sbjct: 70  AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 107

>pdb|1D7A|A Chain A, Crystal Structure Of E. Coli Pure-Mononucleotide Complex. Length = 161

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           V I+  S  D      AA       VP+ ++++  H+   +  S+A SA+E G ++II G
Sbjct: 4   VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 63
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 152
            G  AHL G  AA + + V+ VP+ S   S  D + SI
Sbjct: 64  AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 101

>pdb|3KUU|A Chain A, Structure Of The Pure Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Yersinia Pestis Length = 174

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 55  VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 114
           + I+  S  D      AA  L+   VP+ ++++  H+      S+A  A+  G+ +II G
Sbjct: 15  IAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAG 74
Query: 115 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 163
           +G  AHL G  AA + + V+ VP+ S   S  D + SI + P  + V ++
Sbjct: 75  NGGAAHLPGXLAAKTLVPVLGVPVQSAALSGVDSLYSIVQXPRGIPVGTL 124

>pdb|3TRH|A Chain A, Structure Of A Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit (Pure) From Coxiella Burnetii Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 54  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113
            V I+  SD DL     A   L   G+P+E  IL  H+  KE + +  +A  RG  + I 
Sbjct: 8   FVAILXGSDSDLSTXETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIA 67
Query: 114 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVA--SVPRNNAKN 170
             G+ AHL+G  AA++   VI VP         D ++++++ P  V VA  ++ +  AKN
Sbjct: 68  AAGLAAHLAGTIAAHTLKPVIGVPXAGGSLGGLDALLSTVQXPGGVPVACTAIGKAGAKN 127
Query: 171 AALYAVKVLGIADEDLLERI 190
           AA+ A +++ + D+ + +++
Sbjct: 128 AAILAAQIIALQDKSIAQKL 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
1o4v_A	183	Phosphoribosylaminoimidazole mutase PURE; structur	1e-44
3lp6_A	174	Phosphoribosylaminoimidazole carboxylase catalyti;	3e-44
3rg8_A	159	Phosphoribosylaminoimidazole carboxylase, PURE PR;	7e-42
3trh_A	169	Phosphoribosylaminoimidazole carboxylase carboxylt	8e-39
3ors_A	163	N5-carboxyaminoimidazole ribonucleotide mutase; is	1e-38
1xmp_A	170	PURE, phosphoribosylaminoimidazole carboxylase; pu	6e-38
4b4k_A	181	N5-carboxyaminoimidazole ribonucleotide mutase; is	8e-38
2ywx_A	157	Phosphoribosylaminoimidazole carboxylase catalyti;	1e-37
1u11_A	182	PURE (N5-carboxyaminoimidazole ribonucleotide MUT;	3e-37
3oow_A	166	Phosphoribosylaminoimidazole carboxylase,catalyic;	4e-37
3kuu_A	174	Phosphoribosylaminoimidazole carboxylase catalyti	2e-36
2h31_A	425	Multifunctional protein ADE2; alpha-beta-alpha, li	2e-33

>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Length = 183

 Score =  145 bits (367), Expect = 1e-44
 Identities = 64/149 (42%), Positives = 90/149 (60%), Gaps = 1/149 (0%)

Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
               P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA +A+ERGI
Sbjct: 10  HHHVPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGI 69

Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 167
           ++II G G  AHL G+ A+ + + VI VP+ +   +  D + SI +MP  V VA+V  NN
Sbjct: 70  EVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINN 129

Query: 168 AKNAALYAVKVLGIADEDLLERIRKYVEE 196
           AKNA + A  +LGI   ++  ++++Y E 
Sbjct: 130 AKNAGILAASILGIKYPEIARKVKEYKER 158

>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} Length = 174

 Score =  143 bits (364), Expect = 3e-44
 Identities = 61/149 (40%), Positives = 88/149 (59%), Gaps = 1/149 (0%)

Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           A + P VG+IM SD D PVM DAA  L++F +P E++++  H+  +   SYA  A  RG+
Sbjct: 4   AGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGL 63

Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 167
           ++II G G  AHL G+ AA + + VI VP+        D + SI +MP+ V VA+V    
Sbjct: 64  EVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGG 123

Query: 168 AKNAALYAVKVLGIADEDLLERIRKYVEE 196
           A NA L AV++LG A+  L  RI  + + 
Sbjct: 124 AGNAGLLAVRMLGAANPQLRARIVAFQDR 152

>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} PDB: 3rgg_A* Length = 159

 Score =  137 bits (347), Expect = 7e-42
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKII 111
           P+V I+M S  D+      A  L  FG+ Y I+I   H+  +  +S     +     K+ 
Sbjct: 3   PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLY 62

Query: 112 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNA 171
           I   G    LSG      +   I  P  S+ ++  D+ +S+RMPS +  A V     KNA
Sbjct: 63  ITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKNA 120

Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
           AL A ++  + D+++ + ++ Y+E 
Sbjct: 121 ALLAARIFSLYDKEIADSVKSYMES 145

>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Length = 169

 Score =  130 bits (328), Expect = 8e-39
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)

Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           A +   V I+M SD DL  M  A   L   G+P+E  IL  H+  KE + +  +A  RG 
Sbjct: 3   AMNKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGC 62

Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 167
            + I   G+ AHL+G  AA++   VI VP+        D + S  +MP  V VA      
Sbjct: 63  AVFIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGK 122

Query: 168 --AKNAALYAVKVLGIADEDLLERIRKYVEE 196
             AKNAA+ A +++ + D+ + +++ +    
Sbjct: 123 AGAKNAAILAAQIIALQDKSIAQKLVQQRTA 153

>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Length = 163

 Score =  129 bits (326), Expect = 1e-38
 Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 3/147 (2%)

Query: 50  ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
           ++A  V +IM S  D  +M ++   L  F +PYE +++  H+  K  + +A  A+ERGI 
Sbjct: 1   SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60

Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RN 166
           III G G  AHL G+ A+ + + VI VP+ ++     D + SI +MP  + VA+      
Sbjct: 61  IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAA 120

Query: 167 NAKNAALYAVKVLGIADEDLLERIRKY 193
            AKNA + A ++L I +  L+E++ +Y
Sbjct: 121 GAKNAGILAARMLSIQNPSLVEKLNQY 147

>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Length = 170

 Score =  127 bits (322), Expect = 6e-38
 Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 3/144 (2%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
            +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+K+II
Sbjct: 12  SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 71

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN--AK 169
            G G  AHL G+ AA + + VI VP+ S+  +  D + SI +MP  V VA+V      + 
Sbjct: 72  AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 131

Query: 170 NAALYAVKVLGIADEDLLERIRKY 193
           NA L A ++LG   +D+ + +   
Sbjct: 132 NAGLLAAQILGSFHDDIHDALELR 155

>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Length = 181

 Score =  128 bits (323), Expect = 8e-38
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 49  AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 108
           +    +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+
Sbjct: 19  SHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGL 78

Query: 109 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 167
           K+II G G  AHL G+ AA + + VI VP+ S+  +  D + SI +MP  V VA+V    
Sbjct: 79  KVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGK 138

Query: 168 --AKNAALYAVKVLGIADEDLLERIRKY 193
             + NA L A ++LG   +D+ + +   
Sbjct: 139 AGSTNAGLLAAQILGSFHDDIHDALELR 166

>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Length = 157

 Score =  126 bits (320), Expect = 1e-37
 Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query: 54  IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 113
           ++ IIM S+ DL +   A   L +FGV +E+++   H+  +       ++K     + I 
Sbjct: 1   MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIA 57

Query: 114 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 173
             G+ AHL GV A+ +   VI VP+ ++    D +++S++MP  + VA+V  +  +NAA+
Sbjct: 58  IAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAI 117

Query: 174 YAVKVLGIADEDLLERIRKYVEE 196
            A+++L + DE++ +++ +Y E+
Sbjct: 118 LALEILALKDENIAKKLIEYREK 140

>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Length = 182

 Score =  126 bits (319), Expect = 3e-37
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 33  AACPSTKSCLPRFLLLAADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN 92
           +      S        AA AP+VGIIM S  D   M  A   L++  +P+E  I+  H+ 
Sbjct: 2   SETAPLPSASSALEDKAASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRT 61

Query: 93  CKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 152
                 YA +A ERG+ +II G G  AHL G+ AA +++ V+ VP+ S      D + SI
Sbjct: 62  PDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSI 121

Query: 153 -RMPSHVQVASVP--RNNAKNAALYAVKVLGIADEDLLERIRKY 193
            +MP  V V ++    + AKNAAL A  +L + +  L  R+  +
Sbjct: 122 VQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETW 165

>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} PDB: 3opq_A* Length = 166

 Score =  125 bits (317), Expect = 4e-37
 Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 3/147 (2%)

Query: 50  ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
           A +  VG+IM S  D   M +    L + G+ YE +++  H+   +   YA +AKERG+K
Sbjct: 3   AMSVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLK 62

Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RN 166
           +II G G  AHL G+ AA + + V+ VP+ S   +  D + SI +MP+ + VA+      
Sbjct: 63  VIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMA 122

Query: 167 NAKNAALYAVKVLGIADEDLLERIRKY 193
            AKNAAL+A  +L   D ++ + + ++
Sbjct: 123 GAKNAALFAASILQHTDINIAKALAEF 149

>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Length = 174

 Score =  123 bits (312), Expect = 2e-36
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 50  ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 109
           A    + I+M S  D   M  AA  L+   VP+ ++++  H+      S+A  A+  G+ 
Sbjct: 10  AAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLH 69

Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RN 166
           +II G+G  AHL G+ AA + + V+ VP+ S   S  D + SI +MP  + V ++   + 
Sbjct: 70  VIIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKA 129

Query: 167 NAKNAALYAVKVLGIADEDLLERIRKY 193
            A NAAL A ++L + D +L  R+  +
Sbjct: 130 GAANAALLAAQILALHDTELAGRLAHW 156

>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Length = 425

 Score =  122 bits (308), Expect = 2e-33
 Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 51  DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-K 109
               V ++M S  DL       +   +FG+P E+++   H+   E L      +  GI  
Sbjct: 264 SQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPT 323

Query: 110 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAK 169
           + +   G    L  V + N+   VI  P L+ DW   DV +S+R+PS +  ++V   + +
Sbjct: 324 VFVAVAGRSNGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTV--LSPE 381

Query: 170 NAALYAVKVLGIADEDLLERIRKYVEE 196
            +A +A ++ G+++  +  ++R  +  
Sbjct: 382 GSAQFAAQIFGLSNHLVWSKLRASILN 408

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3ors_A	163	N5-carboxyaminoimidazole ribonucleotide mutase; is	100.0
3trh_A	169	Phosphoribosylaminoimidazole carboxylase carboxylt	100.0
3lp6_A	174	Phosphoribosylaminoimidazole carboxylase catalyti;	100.0
3kuu_A	174	Phosphoribosylaminoimidazole carboxylase catalyti	100.0
1xmp_A	170	PURE, phosphoribosylaminoimidazole carboxylase; pu	100.0
3oow_A	166	Phosphoribosylaminoimidazole carboxylase,catalyic;	100.0
1o4v_A	183	Phosphoribosylaminoimidazole mutase PURE; structur	100.0
1u11_A	182	PURE (N5-carboxyaminoimidazole ribonucleotide MUT;	100.0
4grd_A	173	N5-CAIR mutase, phosphoribosylaminoimidazole carbo	100.0
4b4k_A	181	N5-carboxyaminoimidazole ribonucleotide mutase; is	100.0
3rg8_A	159	Phosphoribosylaminoimidazole carboxylase, PURE PR;	100.0
2ywx_A	157	Phosphoribosylaminoimidazole carboxylase catalyti;	100.0
2h31_A	425	Multifunctional protein ADE2; alpha-beta-alpha, li	100.0
3uhj_A	387	Probable glycerol dehydrogenase; structural genomi	97.38
1jq5_A	370	Glycerol dehydrogenase; oxidoreductase, NAD, glyce	97.25
3ce9_A	354	Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin	97.01
3bfj_A	387	1,3-propanediol oxidoreductase; opportunistic path	96.97
1o2d_A	371	Alcohol dehydrogenase, iron-containing; TM0920, st	96.93
3ox4_A	383	Alcohol dehydrogenase 2; iron, NAD, oxidoreductase	96.9
3okf_A	390	3-dehydroquinate synthase; structural genomics, ce	96.88
3hl0_A	353	Maleylacetate reductase; structur genomics, PSI-2,	96.82
1sg6_A	393	Pentafunctional AROM polypeptide; shikimate pathwa	96.81
1vlj_A	407	NADH-dependent butanol dehydrogenase; TM0820, stru	96.7
1ta9_A	450	Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa	96.7
3jzd_A	358	Iron-containing alcohol dehydrogenase; YP_298327.1	96.6
1rrm_A	386	Lactaldehyde reductase; structural genomics, dehyd	96.55
2q5c_A	196	NTRC family transcriptional regulator; structural	96.44
1oj7_A	408	Hypothetical oxidoreductase YQHD; structural genom	96.21
2pju_A	225	Propionate catabolism operon regulatory protein; s	96.15
2gru_A	368	2-deoxy-scyllo-inosose synthase; aminoglycoside, 2	96.14
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	95.99
3qbe_A	368	3-dehydroquinate synthase; shikimate pathway, myco	95.9
3egc_A	291	Putative ribose operon repressor; structural genom	95.81
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	95.79
1xah_A	354	Sadhqs, 3-dehydroquinate synthase; shikimate pathw	95.71
3iv7_A	364	Alcohol dehydrogenase IV; NP_602249.1, iron-contai	95.71
1ujn_A	348	Dehydroquinate synthase; riken structu genomics/pr	95.52
3kke_A	303	LACI family transcriptional regulator; structural	95.42
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	94.92
3o74_A	272	Fructose transport system repressor FRUR; dual tra	94.81
3h5o_A	339	Transcriptional regulator GNTR; transcription regu	94.67
3gv0_A	288	Transcriptional regulator, LACI family; transcript	94.52
3k4h_A	292	Putative transcriptional regulator; structural gen	94.42
2o20_A	332	Catabolite control protein A; CCPA, transcriptiona	94.38
2rjo_A	332	Twin-arginine translocation pathway signal protei;	94.33
1kq3_A	376	Glycerol dehydrogenase; structural genomics, joint	94.27
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	94.24
3clh_A	343	3-dehydroquinate synthase; shikimate pathway, arom	94.13
3ctp_A	330	Periplasmic binding protein/LACI transcriptional;	94.09
3miz_A	301	Putative transcriptional regulator protein, LACI f	93.95
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	93.93
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	93.88
3k9c_A	289	Transcriptional regulator, LACI family protein; PS	93.86
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	93.85
3bbl_A	287	Regulatory protein of LACI family; protein structu	93.77
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	93.74
3c3k_A	285	Alanine racemase; structural genomics, protein str	93.73
3bil_A	348	Probable LACI-family transcriptional regulator; st	93.61
3o1i_D	304	Periplasmic protein TORT; ligand free, two compone	93.56
3qk7_A	294	Transcriptional regulators; structural genomics, N	93.55
3brs_A	289	Periplasmic binding protein/LACI transcriptional;	93.55
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	93.53
3rf7_A	375	Iron-containing alcohol dehydrogenase; structural	93.44
2h3h_A	313	Sugar ABC transporter, periplasmic sugar-binding p	93.42
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	93.38
2iks_A	293	DNA-binding transcriptional dual regulator; escher	93.14
3jvd_A	333	Transcriptional regulators; structural genomics, P	93.08
3d8u_A	275	PURR transcriptional regulator; APC91343.1, vibrio	93.07
1qpz_A	340	PURA, protein (purine nucleotide synthesis repress	92.91
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	92.83
3h75_A	350	Periplasmic sugar-binding domain protein; protein	92.79
3s99_A	356	Basic membrane lipoprotein; ssgcid, structural gen	92.59
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	92.58
3lft_A	295	Uncharacterized protein; ABC, ATPase, cassette, L-	92.56
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	92.44
3gyb_A	280	Transcriptional regulators (LACI-family transcript	92.2
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	92.2
3e3m_A	355	Transcriptional regulator, LACI family; structural	91.93
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	91.89
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	91.85
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	91.84
2vk2_A	306	YTFQ, ABC transporter periplasmic-binding protein	91.76
3kjx_A	344	Transcriptional regulator, LACI family; LACL famil	91.49
2qh8_A	302	Uncharacterized protein; conserved domain protein,	91.46
1jye_A	349	Lactose operon repressor; gene regulation, protein	91.23
1jx6_A	342	LUXP protein; protein-ligand complex, signaling pr	91.08
1tjy_A	316	Sugar transport protein; protein-ligand complex, s	91.08
3d02_A	303	Putative LACI-type transcriptional regulator; peri	91.04
2fqx_A	318	Membrane lipoprotein TMPC; ABC transport system, l	91.03
2x7x_A	325	Sensor protein; transferase, sensor histidine kina	90.9
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	90.77
2dri_A	271	D-ribose-binding protein; sugar transport; HET: RI	90.46
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	90.44
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	90.39
2qu7_A	288	Putative transcriptional regulator; structural gen	90.37
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	89.6
1f0k_A	364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	89.5
8abp_A	306	L-arabinose-binding protein; binding proteins; HET	89.26
3loq_A	294	Universal stress protein; structural genomics, PSI	89.22
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	88.95
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	88.95
2qv7_A	337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	88.83
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	88.73
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	88.55
2hsg_A	332	Glucose-resistance amylase regulator; CCPA, transc	88.4
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	88.33
3lkv_A	302	Uncharacterized conserved domain protein; ATPase b	87.99
3dlo_A	155	Universal stress protein; unknown function, struct	87.48
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	87.05
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	86.93
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	86.83
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	86.11
2dgd_A	223	223AA long hypothetical arylmalonate decarboxylas;	85.78
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	85.7
1byk_A	255	Protein (trehalose operon repressor); LACI family,	85.24
3fg9_A	156	Protein of universal stress protein USPA family; A	85.01
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	83.5
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	83.29
2h0a_A	276	TTHA0807, transcriptional regulator; repressor, st	82.9
1gud_A	288	ALBP, D-allose-binding periplasmic protein; peripl	82.65
2l2q_A	109	PTS system, cellobiose-specific IIB component (CE;	82.29
3s81_A	268	Putative aspartate racemase; structural genomics,	81.99
2xed_A	273	Putative maleate isomerase; nicotinic acid catabol	81.26
1efv_B	255	Electron transfer flavoprotein; electron transport	80.51
2o6l_A	170	UDP-glucuronosyltransferase 2B7; drug metabolism,	80.22
3g85_A	289	Transcriptional regulator (LACI family); transcrip	80.07
1efp_B	252	ETF, protein (electron transfer flavoprotein); ele	80.06

>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.3e-61  Score=394.27  Aligned_cols=146  Identities=34%  Similarity=0.577  Sum_probs=142.5

Q ss_pred             CCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccC
Q 029271           51 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ  130 (196)
Q Consensus        51 ~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~  130 (196)
                      +.++|+|||||+||+++|+|++++|++||++||++|+|+||+|+++.+|+++++++|++|||++||++||||||+||+|+
T Consensus         2 ~~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~   81 (163)
T 3ors_A            2 NAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTT   81 (163)
T ss_dssp             -CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred             CCCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          131 ILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       131 ~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      +||||||+++++++|+| ||||+|||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus        82 ~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~  150 (163)
T 3ors_A           82 LPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESS  150 (163)
T ss_dssp             SCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            99999999999999999 9999999999999999999  999999999999999999999999999973

>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}

Probab=100.00  E-value=1.2e-60  Score=393.50  Aligned_cols=145  Identities=32%  Similarity=0.532  Sum_probs=142.3

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      .++|+|||||+||+++|+|+.++|++||++||++|+|+||+|+++.+|+++++++|++|||++||++||||||+||+|++
T Consensus         6 ~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~   85 (169)
T 3trh_A            6 KIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAHTLK   85 (169)
T ss_dssp             CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHTCSS
T ss_pred             CCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||||+++++++|+| ||||+|||+|+||+||+||  |++|||++|+|||+++|++||+||+.||++
T Consensus        86 PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~  153 (169)
T 3trh_A           86 PVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIALQDKSIAQKLVQQRTA  153 (169)
T ss_dssp             CEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999988999999 9999999999999999999  999999999999999999999999999973

>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0

Probab=100.00  E-value=1.1e-60  Score=395.23  Aligned_cols=147  Identities=39%  Similarity=0.638  Sum_probs=143.1

Q ss_pred             CCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271           50 ADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  129 (196)
Q Consensus        50 ~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t  129 (196)
                      ++.++|+|||||+||+++|+|++++|++||++||++|+||||+|+++.+|+++++++|++|||++||++||||||+||+|
T Consensus         5 ~~~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t   84 (174)
T 3lp6_A            5 GERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAAT   84 (174)
T ss_dssp             -CCCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHC
T ss_pred             CCCCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhcc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          130 QILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       130 ~~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ++||||||+++++++|+| ||||+|||+|+||+||||||++|||++|+|||+++|++||+||++||++
T Consensus        85 ~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~  152 (174)
T 3lp6_A           85 PLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQDR  152 (174)
T ss_dssp             SSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999988999999 9999999999999999999999999999999999999999999999973

>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*

Probab=100.00  E-value=1.4e-60  Score=394.52  Aligned_cols=148  Identities=30%  Similarity=0.509  Sum_probs=143.9

Q ss_pred             cCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        49 ~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      ....++|+|||||+||+++|+|+.++|++||++||++|+|+||+|+++.+|+++++++|++|||++||++||||||+||+
T Consensus         9 ~~m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~   88 (174)
T 3kuu_A            9 YAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAK   88 (174)
T ss_dssp             SCCCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHT
T ss_pred             ccCCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          129 SQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       129 t~~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      |++||||||+++++++|+| ||||+|||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus        89 t~~PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~~d~~l~~kl~~~r~~  159 (174)
T 3kuu_A           89 TLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDTELAGRLAHWRQS  159 (174)
T ss_dssp             CSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999998999999 9999999999999999999  999999999999999999999999999973

>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1

Probab=100.00  E-value=1.8e-60  Score=392.53  Aligned_cols=145  Identities=35%  Similarity=0.573  Sum_probs=142.6

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      +|+|+|||||+||+++|+|++++|++||++||++|+|+||+|+++.+|+++++++|++|||++||++||||||+||+|++
T Consensus        11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~   90 (170)
T 1xmp_A           11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL   90 (170)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS
T ss_pred             CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||||++++.++|+| ||||+|||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus        91 PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kl~~~r~~  158 (170)
T 1xmp_A           91 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREA  158 (170)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            9999999998999999 9999999999999999999  999999999999999999999999999973

>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*

Probab=100.00  E-value=4.5e-60  Score=389.05  Aligned_cols=145  Identities=34%  Similarity=0.592  Sum_probs=141.8

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      +|+|+|||||+||+++|+|++++|++||++||++|+|+||+|+++.+|+++++++|++|||++||++||||||+||+|++
T Consensus         5 ~p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~~   84 (166)
T 3oow_A            5 SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTL   84 (166)
T ss_dssp             CEEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCSS
T ss_pred             CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||||+++++|+|+| ||||+|||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus        85 PVIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~Il~~~d~~l~~kl~~~r~~  152 (166)
T 3oow_A           85 PVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAE  152 (166)
T ss_dssp             CEEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred             CEEEeecCcCCCCCHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999 9999999999999999999  499999999999999999999999999973

>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1

Probab=100.00  E-value=6.6e-60  Score=393.01  Aligned_cols=145  Identities=43%  Similarity=0.700  Sum_probs=142.0

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      -|+|+|||||+||+++|+|++++|++||++||++|+||||+|+++.+|+++++++|++||||+||++||||||+||+|++
T Consensus        13 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~   92 (183)
T 1o4v_A           13 VPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHL   92 (183)
T ss_dssp             -CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred             CCeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||||++++.++|+| ||||+|||+|+||+||||||++|||++|+|||+++|++||+||++||++
T Consensus        93 PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla~~d~~l~~kL~~~r~~  158 (183)
T 1o4v_A           93 PVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKER  158 (183)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999998999999 9999999999999999999999999999999999999999999999973

>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A

Probab=100.00  E-value=1.8e-59  Score=390.15  Aligned_cols=145  Identities=35%  Similarity=0.546  Sum_probs=142.4

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      .++|+|||||+||+++|+|+.++|++|||+||++|+|+||+|+++.+|+++++++|++|||++||++||||||+||+|++
T Consensus        21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~  100 (182)
T 1u11_A           21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRL  100 (182)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred             CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhccCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||||++++.++|+| ||||+|||+|+||+||+||  |++|||++|+|||+++|++||+||++||++
T Consensus       101 PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kL~~~r~~  168 (182)
T 1u11_A          101 PVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRAL  168 (182)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            9999999998999999 9999999999999999999  999999999999999999999999999973

>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}

Probab=100.00  E-value=5.6e-59  Score=384.43  Aligned_cols=148  Identities=38%  Similarity=0.594  Sum_probs=143.8

Q ss_pred             cCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           49 AADAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        49 ~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      .++.|+|+|||||+||+++|+|+.++|++|||+||++|+||||+|+++.+|+++++++|++|||++||++||||||+||+
T Consensus         9 ~~~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~   88 (173)
T 4grd_A            9 THSAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAK   88 (173)
T ss_dssp             CCSSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHH
T ss_pred             CCCCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheec
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          129 SQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       129 t~~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      |++||||||++++.++|+| |||++|||+|+||+||+|+  |++|||++|+|||+++|+++|+||++||++
T Consensus        89 t~~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~ILa~~d~~l~~kl~~~r~~  159 (173)
T 4grd_A           89 TTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSILSGNSVDYANRLAAFRVR  159 (173)
T ss_dssp             CCSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999 9999999999999999999  999999999999999999999999999973

>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}

Probab=100.00  E-value=7.5e-59  Score=385.79  Aligned_cols=145  Identities=35%  Similarity=0.573  Sum_probs=141.9

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      +|+|+|||||+||+++|+++.++|++|||+||++|+||||+|+++.+|+++++++|++||||+||++||||||+|++|++
T Consensus        22 kp~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T~~  101 (181)
T 4b4k_A           22 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL  101 (181)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTCCS
T ss_pred             CccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||||+.++.++|+| ||||+|||+|+||+||+|+  +++|||++|+|||+++|++||+||+.||++
T Consensus       102 PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvaig~~ga~NAallA~qILa~~d~~l~~kl~~~r~~  169 (181)
T 4b4k_A          102 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREA  169 (181)
T ss_dssp             CEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCccchhhHHHHHhCCCCCceEEEecCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            9999999998999999 9999999999999999999  789999999999999999999999999973

>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*

Probab=100.00  E-value=1.1e-58  Score=378.82  Aligned_cols=143  Identities=29%  Similarity=0.434  Sum_probs=139.1

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC-CCeEEEEecCCCCchhHhhhhccC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAHLSGVAAANSQ  130 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~-~~~V~IavAG~sa~L~gvvA~~t~  130 (196)
                      .++|+|||||+||+++|+|++++|++||++||++|+|+||+|+++.+|+++++++ +++|||++||++||||||+||+|+
T Consensus         2 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~   81 (159)
T 3rg8_A            2 RPLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVK   81 (159)
T ss_dssp             CCEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSS
T ss_pred             CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccC
Confidence            4689999999999999999999999999999999999999999999999999986 799999999999999999999999


Q ss_pred             CcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          131 ILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       131 ~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      +||||||+++++++|+|||||||||+|+||+||  +|++|||++|+|||+++|++||+||++||++
T Consensus        82 ~PVIgVP~~~~~l~G~dLlS~vqmp~GvpVatv--~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~  145 (159)
T 3rg8_A           82 GATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKNAALLAARIFSLYDKEIADSVKSYMES  145 (159)
T ss_dssp             SCEEECCCCCCGGGGTHHHHHHCCCTTCCCEEC--CSHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCCCccHHHHHhCCCCCceEEe--cCchHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998  9999999999999999999999999999963

>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=5.8e-58  Score=373.77  Aligned_cols=139  Identities=30%  Similarity=0.530  Sum_probs=135.1

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcE
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILV  133 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PV  133 (196)
                      +|+|+|||+||+++|+|++++|++||++||++|+|+||+|+++.+|++++++   +|||++||++||||||+||+|++||
T Consensus         1 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~---~ViIa~AG~aa~Lpgvva~~t~~PV   77 (157)
T 2ywx_A            1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAGLAAHLPGVVASLTTKPV   77 (157)
T ss_dssp             CEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC---SEEEEEEESSCCHHHHHHTTCSSCE
T ss_pred             CEEEEEccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC---CEEEEEcCchhhhHHHHHhccCCCE
Confidence            4899999999999999999999999999999999999999999999998866   8999999999999999999999999


Q ss_pred             EEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          134 IRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       134 IgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||+ ++.++|+| ||||+|||+|+||+||||||++|||++|+|||+++|+++|+||++||++
T Consensus        78 IgVP~-~~~l~G~daLlS~vqmP~gvpVatV~I~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~  140 (157)
T 2ywx_A           78 IAVPV-DAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDENIAKKLIEYREK  140 (157)
T ss_dssp             EEEEE-CSSGGGHHHHHHHHSCCTTSCCEECCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             EEecC-CCccCcHHHHHHHhcCCCCCeeEEEecCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999 77899999 9999999999999999999999999999999999999999999999973

>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-56  Score=409.57  Aligned_cols=186  Identities=22%  Similarity=0.297  Sum_probs=152.7

Q ss_pred             cccCCccchhhhhhhhhhhhccccCCCCCccccc----cccc-cccc-cCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Q 029271            7 NHQLSSRKKTLMVTLQLLRCQIVYVPAACPSTKS----CLPR-FLLL-AADAPIVGIIMESDLDLPVMNDAARTLSDFGV   80 (196)
Q Consensus         7 ~~~~~sgdk~l~~dkq~yr~l~~vt~~~~~~vk~----v~~~-~~~~-~~~~~~V~IimGS~SD~~~~~~~~~~l~~~gi   80 (196)
                      ..=|+.+++..+.|||+||+..++|+.++..|..    +..+ .... +...++|+|||||+||+|+|+||+.+|++||+
T Consensus       214 ~R~W~~~~~~~~~DK~~~R~~~~~~~~~l~~v~~~Y~eVa~rL~i~~~~~~~~~V~Ii~gs~SD~~~~~~a~~~l~~~gi  293 (425)
T 2h31_A          214 WRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMGSTSDLGHCEKIKKACGNFGI  293 (425)
T ss_dssp             EEEECCC------------------CCSSSCCCCCHHHHHTTGGGGGSCSCCCEEEEEESCGGGHHHHHHHHHHHHHTTC
T ss_pred             cccccCCCCCCcccHHHHHhccccchhhHHHHHHHHHHHHHHhhcccCccCCCeEEEEecCcccHHHHHHHHHHHHHcCC
Confidence            4568888878889999999999999999988875    2222 1111 34457999999999999999999999999999


Q ss_pred             CeEEEEEcccCCchHHHHHHHHHhhCCC-eEEEEecCCCCchhHhhhhccCCcEEEecCCCCCCChhh-hhhhhcCCCCC
Q 029271           81 PYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHV  158 (196)
Q Consensus        81 ~~ev~V~SaHR~p~~~~~~~~~~e~~~~-~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~~~~G~D-LlS~lqmPsGv  158 (196)
                      +||++|+||||+|+++.+|+++++++|+ +||||+|||+||||||+||+|++||||||++ +.++|+| ||||||||+|+
T Consensus       294 ~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~-~~~~G~daLls~vqmp~g~  372 (425)
T 2h31_A          294 PCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPL-TPDWGVQDVWSSLRLPSGL  372 (425)
T ss_dssp             CEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHHHCSSCEEECCCC-CTTTHHHHGGGTSSCCSSC
T ss_pred             ceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHhccCCCCEEEeeCc-cccccHHHHHHHhcCCCCC
Confidence            9999999999999999999999999999 6999999999999999999999999999996 5799999 99999999999


Q ss_pred             eeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 029271          159 QVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE  195 (196)
Q Consensus       159 pvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~  195 (196)
                      ||+||+  |++|||++|+|||+++|++||+||++||+
T Consensus       373 pvatv~--~~~nAa~~A~~Il~~~~~~l~~kl~~~~~  407 (425)
T 2h31_A          373 GCSTVL--SPEGSAQFAAQIFGLSNHLVWSKLRASIL  407 (425)
T ss_dssp             CCEECC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ceEEec--CchHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            999994  99999999999999999999999999996

>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}

Probab=97.38  E-value=0.00026  Score=63.76  Aligned_cols=87  Identities=11%  Similarity=0.123  Sum_probs=70.2

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~~  131 (196)
                      .++.||++...--...+++.+.|++ |+.+..-....+-+.+.+.+.++.+.+.++++||++.|++. -++..+|-....
T Consensus        53 ~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~~~~  131 (387)
T 3uhj_A           53 KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTGA  131 (387)
T ss_dssp             SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHhcCC
Confidence            5899999988876788999999999 99885555678888899999999998889999999999864 588999999999


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       132 p~i~IPTTa  140 (387)
T 3uhj_A          132 RIVIAPTIA  140 (387)
T ss_dssp             EEEECCSSC
T ss_pred             CEEEecCcc
Confidence            999999974

>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*

Probab=97.25  E-value=0.00028  Score=62.14  Aligned_cols=88  Identities=14%  Similarity=0.060  Sum_probs=73.2

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~  131 (196)
                      .++.||++..+.....+++.+.|++-|+.+.+.+.+-+.+.+.+.+..+.+.+.++++||++.|++ .-+++.+|-...+
T Consensus        32 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~  111 (370)
T 1jq5_A           32 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDA  111 (370)
T ss_dssp             SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence            589999988776677899999999999987654555555666888888888888999999998874 6699999988999


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       112 p~i~IPTTa  120 (370)
T 1jq5_A          112 YIVIVPTAA  120 (370)
T ss_dssp             EEEEEESSC
T ss_pred             CEEEecccc
Confidence            999999974

>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}

Probab=97.01  E-value=0.00093  Score=58.47  Aligned_cols=88  Identities=10%  Similarity=0.004  Sum_probs=73.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t~~  131 (196)
                      .++.||++........+++.+.|++-|+++.+-.-..+-+.+.+.+. +.+.+.++++||++.|+ ..-+++.+|-....
T Consensus        35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA~~~~~  113 (354)
T 3ce9_A           35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMAFLRKL  113 (354)
T ss_dssp             SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHHhhcCC
Confidence            48999999887767889999999999998765442466788888888 87777788999999886 45699999999999


Q ss_pred             cEEEecCCCC
Q 029271          132 LVIRVPLLSE  141 (196)
Q Consensus       132 PVIgvP~~~~  141 (196)
                      |+|.||+..+
T Consensus       114 p~i~IPTT~~  123 (354)
T 3ce9_A          114 PFISVPTSTS  123 (354)
T ss_dssp             CEEEEESCCS
T ss_pred             CEEEecCccc
Confidence            9999999764

>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}

Probab=96.97  E-value=0.0016  Score=57.79  Aligned_cols=88  Identities=10%  Similarity=0.077  Sum_probs=71.3

Q ss_pred             CeEEEEEcCCCCHH---HHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhh
Q 029271           53 PIVGIIMESDLDLP---VMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAA  127 (196)
Q Consensus        53 ~~V~IimGS~SD~~---~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~  127 (196)
                      .++.||++...-..   ..+++.+.|++-|+.+.+ .-...+.+.+.+.+.++.+.+.++++||++.|++ --++..+|.
T Consensus        34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~  113 (387)
T 3bfj_A           34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGI  113 (387)
T ss_dssp             SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHH
T ss_pred             CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHH
Confidence            58999998876555   899999999999997632 1234788999999999999999999999998874 458888887


Q ss_pred             c------------------cCCcEEEecCCC
Q 029271          128 N------------------SQILVIRVPLLS  140 (196)
Q Consensus       128 ~------------------t~~PVIgvP~~~  140 (196)
                      .                  ..+|+|.||+..
T Consensus       114 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~  144 (387)
T 3bfj_A          114 AATHEGDLYQYAGIETLTNPLPPIVAVNTTA  144 (387)
T ss_dssp             HHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred             HHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence            5                  578999999975

>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*

Probab=96.93  E-value=0.0026  Score=56.35  Aligned_cols=89  Identities=10%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             CeEEEEEcCCCCH--HHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhc
Q 029271           53 PIVGIIMESDLDL--PVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAAN  128 (196)
Q Consensus        53 ~~V~IimGS~SD~--~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~  128 (196)
                      .++.||++..+-.  ...+++.+.|++-|+.+.+ .-...+.+.+.+.+.++.+.+.++++||++.|++ --++.++|..
T Consensus        41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~  120 (371)
T 1o2d_A           41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVL  120 (371)
T ss_dssp             SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred             CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHH
Confidence            5899999875533  3789999999999987643 2235889999999999999888899999998874 4588888875


Q ss_pred             ------------------cCCcEEEecCCCC
Q 029271          129 ------------------SQILVIRVPLLSE  141 (196)
Q Consensus       129 ------------------t~~PVIgvP~~~~  141 (196)
                                        ..+|+|.||+..+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTTag  151 (371)
T 1o2d_A          121 LKEKDLSVEDLYDREKVKHWLPVVEIPTTAG  151 (371)
T ss_dssp             TTSTTCCSGGGGCGGGCCCCCCEEEEECSSC
T ss_pred             HhCCCCCHHHHhcccCCCCCCeEEEEeCCCc
Confidence                              5789999999853

>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*

Probab=96.90  E-value=0.001  Score=59.30  Aligned_cols=89  Identities=12%  Similarity=0.116  Sum_probs=71.2

Q ss_pred             CeEEEEEcCCCC-HHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhcc
Q 029271           53 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANS  129 (196)
Q Consensus        53 ~~V~IimGS~SD-~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t  129 (196)
                      .++.||++..-. ....+++.+.|++-|+.+.+ .-...+.+.+.+.+.++.+.+.++++||++.|++. -++..+|...
T Consensus        32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~  111 (383)
T 3ox4_A           32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVA  111 (383)
T ss_dssp             CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHH
Confidence            589999986422 12678899999999998753 33458999999999999998889999999999864 4777777765


Q ss_pred             ------------------CCcEEEecCCCC
Q 029271          130 ------------------QILVIRVPLLSE  141 (196)
Q Consensus       130 ------------------~~PVIgvP~~~~  141 (196)
                                        .+|+|.||+..+
T Consensus       112 ~~~~~~~d~~~~~~~~~~~~p~i~IPTTag  141 (383)
T 3ox4_A          112 TNGGEVKDYEGIDKSKKPALPLMSINTTAG  141 (383)
T ss_dssp             HSCSSGGGGCEESCCSSCCSCEEEEECSSS
T ss_pred             hCCCCHHHHhcccccccCCCCEEEEeCCCC
Confidence                              799999999753

>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}

Probab=96.88  E-value=0.0033  Score=56.99  Aligned_cols=88  Identities=18%  Similarity=0.154  Sum_probs=74.8

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCCC-CchhHh
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVE-AHLSGV  124 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~s-a~L~gv  124 (196)
                      ..+|.||++....--+.+++.+.|++.|+++++-+..   .+++.+.+.++.+.+.+.++   +++||+.|++ .-++++
T Consensus        62 ~~rvlIVtd~~v~~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~  141 (390)
T 3okf_A           62 KQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGF  141 (390)
T ss_dssp             TCEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHH
T ss_pred             CCEEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHH
Confidence            3589999999988779999999999999988765543   57889999999999988888   6999998884 568888


Q ss_pred             hhh--ccCCcEEEecCC
Q 029271          125 AAA--NSQILVIRVPLL  139 (196)
Q Consensus       125 vA~--~t~~PVIgvP~~  139 (196)
                      +|+  ....|+|.+|+.
T Consensus       142 ~Aa~~~rgip~I~IPTT  158 (390)
T 3okf_A          142 AAACYQRGVDFIQIPTT  158 (390)
T ss_dssp             HHHHBTTCCEEEEEECS
T ss_pred             HHHHhcCCCCEEEeCCC
Confidence            874  578999999996

>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}

Probab=96.82  E-value=0.00074  Score=59.87  Aligned_cols=86  Identities=10%  Similarity=0.040  Sum_probs=68.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~~t~~  131 (196)
                      .+|.||++... ....+++.+.|++.++.+--. ...+.+.+.+.+.++.+...++++||++.|++.. ++..+|....+
T Consensus        35 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~v~~~-v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~  112 (353)
T 3hl0_A           35 SRALVLSTPQQ-KGDAEALASRLGRLAAGVFSE-AAMHTPVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALRTDA  112 (353)
T ss_dssp             CCEEEECCGGG-HHHHHHHHHHHGGGEEEEECC-CCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHCC
T ss_pred             CEEEEEecCch-hhHHHHHHHHHhhCCcEEecC-cCCCCcHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence            47999998764 567888888888754321111 1257777889999999988899999999999654 89999999999


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       113 p~i~IPTTa  121 (353)
T 3hl0_A          113 AQIVIPTTY  121 (353)
T ss_dssp             EEEEEECSS
T ss_pred             CEEEEeCCc
Confidence            999999975

>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*

Probab=96.81  E-value=0.0035  Score=56.04  Aligned_cols=87  Identities=11%  Similarity=0.121  Sum_probs=71.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHh------CCCeEEEEEcc---cCCchHHHHHHHHHhhCC--C---eEEEEecCC-
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDF------GVPYEIKILPP---HQNCKEALSYALSAKERG--I---KIIIVGDGV-  117 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~------gi~~ev~V~Sa---HR~p~~~~~~~~~~e~~~--~---~V~IavAG~-  117 (196)
                      .++.||++.....-+.+++.+.|+..      |+.+..-+...   +++.+.+.++.+.+.+.+  +   +++||+.|+ 
T Consensus        37 ~k~liVtd~~v~~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGs  116 (393)
T 1sg6_A           37 TTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGV  116 (393)
T ss_dssp             SEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHH
T ss_pred             CeEEEEECCcHHHHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcH
Confidence            58999998765444788899999877      77766445555   889999999999998888  8   999999887 


Q ss_pred             CCchhHhhhh--ccCCcEEEecCC
Q 029271          118 EAHLSGVAAA--NSQILVIRVPLL  139 (196)
Q Consensus       118 sa~L~gvvA~--~t~~PVIgvP~~  139 (196)
                      ..-+++++|+  ....|+|.||+.
T Consensus       117 v~D~ak~~Aa~~~rgip~i~IPTT  140 (393)
T 1sg6_A          117 IGDLTGFVASTYMRGVRYVQVPTT  140 (393)
T ss_dssp             HHHHHHHHHHHGGGCCEEEEEECS
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCc
Confidence            4669999995  578999999995

>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2

Probab=96.70  E-value=0.0045  Score=55.42  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=68.9

Q ss_pred             CeEEEEEcCCCCH--HHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhh
Q 029271           53 PIVGIIMESDLDL--PVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAA  126 (196)
Q Consensus        53 ~~V~IimGS~SD~--~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA  126 (196)
                      .++.||++..+=.  ...+++.+.|++-|+.+.  +.+   .+.+.+.+.+.++.+.+.++++||++.|+| --++..+|
T Consensus        44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~--~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA  121 (407)
T 1vlj_A           44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWV--EVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVA  121 (407)
T ss_dssp             CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEE--EECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH
T ss_pred             CeEEEEECchHHhhccHHHHHHHHHHHcCCeEE--EecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHH
Confidence            5899999854322  378999999999998764  333   478889999999999999999999998875 45788887


Q ss_pred             hc------------------cCCcEEEecCCC
Q 029271          127 AN------------------SQILVIRVPLLS  140 (196)
Q Consensus       127 ~~------------------t~~PVIgvP~~~  140 (196)
                      ..                  ..+|+|.||+..
T Consensus       122 ~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTa  153 (407)
T 1vlj_A          122 AGALYEGDIWDAFIGKYQIEKALPIFDVLTIS  153 (407)
T ss_dssp             HHTTCSSCGGGGGGTSCCCCCCCCEEEEECSC
T ss_pred             HHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence            74                  478999999975

>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}

Probab=96.70  E-value=0.0013  Score=60.25  Aligned_cols=86  Identities=13%  Similarity=0.082  Sum_probs=71.3

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCCc
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQIL  132 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~P  132 (196)
                      +|.||++..+.....+++.+.|++-|+.+.+.+.+-+.+-+.+.+..+.+.+ ++++|||+.|++ .-++..+|-...+|
T Consensus        93 rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~~giP  171 (450)
T 1ta9_A           93 SAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHSMNLP  171 (450)
T ss_dssp             EEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHHTTCC
T ss_pred             EEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHhcCCC
Confidence            8999998776556889999999999998765555556666678888877777 889999998875 56999999989999


Q ss_pred             EEEecCCC
Q 029271          133 VIRVPLLS  140 (196)
Q Consensus       133 VIgvP~~~  140 (196)
                      +|.||+..
T Consensus       172 ~I~IPTTA  179 (450)
T 1ta9_A          172 SIICPTTA  179 (450)
T ss_dssp             EEEEESSC
T ss_pred             EEEEeCCC
Confidence            99999974

>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}

Probab=96.60  E-value=0.0012  Score=58.82  Aligned_cols=86  Identities=13%  Similarity=0.087  Sum_probs=67.5

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~~  131 (196)
                      .+|.||++... ....+++.+.|+..++.+ +.-...|.+.+.+.+.++.+.+.++++||++.|++. -++..+|....+
T Consensus        37 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~~-f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~~~~  114 (358)
T 3jzd_A           37 KRALVLCTPNQ-QAEAERIADLLGPLSAGV-YAGAVMHVPIESARDATARAREAGADCAVAVGGGSTTGLGKAIALETGM  114 (358)
T ss_dssp             SCEEEECCGGG-HHHHHHHHHHHGGGEEEE-ECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHCC
T ss_pred             CeEEEEeCCcH-HHHHHHHHHHhccCCEEE-ecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence            47999998764 567888888887654311 111235677888889999888889999999999965 489999999999


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       115 p~i~IPTT~  123 (358)
T 3jzd_A          115 PIVAIPTTY  123 (358)
T ss_dssp             CEEEEECSS
T ss_pred             CEEEEeCCc
Confidence            999999974

>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*

Probab=96.55  E-value=0.002  Score=56.99  Aligned_cols=88  Identities=13%  Similarity=0.142  Sum_probs=69.8

Q ss_pred             CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhcc
Q 029271           53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANS  129 (196)
Q Consensus        53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t  129 (196)
                      .++.||++..... ...+++.+.|++-|+.+.+ .-...+.+.+.+.+.++.+.+.++++||++.|++ .-++.++|...
T Consensus        32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~  111 (386)
T 1rrm_A           32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIIS  111 (386)
T ss_dssp             CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred             CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence            5899999765422 3789999999999987642 2234788899999999999988999999998874 45788887754


Q ss_pred             --------------------CCcEEEecCCC
Q 029271          130 --------------------QILVIRVPLLS  140 (196)
Q Consensus       130 --------------------~~PVIgvP~~~  140 (196)
                                          .+|+|.||+..
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~  142 (386)
T 1rrm_A          112 NNPEFADVRSLEGLSPTNKPSVPILAIPTTA  142 (386)
T ss_dssp             HCGGGTTSGGGSEECCCCSCCSCEEEEECSS
T ss_pred             hCCCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence                                78999999975

>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}

Probab=96.44  E-value=0.016  Score=47.24  Aligned_cols=126  Identities=13%  Similarity=0.115  Sum_probs=83.9

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  132 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P  132 (196)
                      .+++++.....   -.+.+.+++.+++...++.+.    ..++..+.++++ ..|++|||+-.|.    +..+-.+++.|
T Consensus         5 ~~I~~iapy~~---l~~~~~~i~~e~~~~i~i~~~----~l~~~v~~a~~~-~~~~dVIISRGgt----a~~lr~~~~iP   72 (196)
T 2q5c_A            5 LKIALISQNEN---LLNLFPKLALEKNFIPITKTA----SLTRASKIAFGL-QDEVDAIISRGAT----SDYIKKSVSIP   72 (196)
T ss_dssp             CEEEEEESCHH---HHHHHHHHHHHHTCEEEEEEC----CHHHHHHHHHHH-TTTCSEEEEEHHH----HHHHHTTCSSC
T ss_pred             CcEEEEEccHH---HHHHHHHHHhhhCCceEEEEC----CHHHHHHHHHHh-cCCCeEEEECChH----HHHHHHhCCCC
Confidence            46677765533   333555556677774444433    468888888888 8899999996554    44556678899


Q ss_pred             EEEecCCCCCCChhhhhhhhcCCC--CCeeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 029271          133 VIRVPLLSEDWSEDDVINSIRMPS--HVQVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  195 (196)
Q Consensus       133 VIgvP~~~~~~~G~DLlS~lqmPs--GvpvatV~I~~~~nAA~~AaqILa~~--------d~~l~~kl~~~r~  195 (196)
                      ||-+|++     |.|++..++...  +-.++.|+-.+....+-.-.++|++.        .+++++.++..++
T Consensus        73 VV~I~~s-----~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~  140 (196)
T 2q5c_A           73 SISIKVT-----RFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKT  140 (196)
T ss_dssp             EEEECCC-----HHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHH
T ss_pred             EEEEcCC-----HhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence            9999875     467444444311  22688888788887777778888853        3466666666554

>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2

Probab=96.21  E-value=0.0064  Score=54.40  Aligned_cols=84  Identities=17%  Similarity=0.125  Sum_probs=65.1

Q ss_pred             CeEEEEEcCCCCHH--HHHHHHHHHHHhCCCeEEEEE---cccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhh
Q 029271           53 PIVGIIMESDLDLP--VMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAA  126 (196)
Q Consensus        53 ~~V~IimGS~SD~~--~~~~~~~~l~~~gi~~ev~V~---SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA  126 (196)
                      .++.||++..+-..  ..+++.+.|+  |+++.  +.   ..+.+.+.+.+.++.+.+.++++||++.|++ --++..+|
T Consensus        51 ~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~--~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA  126 (408)
T 1oj7_A           51 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVL--EFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIA  126 (408)
T ss_dssp             CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEE--EECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHH
T ss_pred             CEEEEEECCchhhhccHHHHHHHHhC--CCEEE--EeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH
Confidence            58999998764333  6788887776  77643  33   2578889999999999888999999998875 45778887


Q ss_pred             hc---------------------cCCcEEEecCCC
Q 029271          127 AN---------------------SQILVIRVPLLS  140 (196)
Q Consensus       127 ~~---------------------t~~PVIgvP~~~  140 (196)
                      ..                     ..+|+|.||+..
T Consensus       127 ~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa  161 (408)
T 1oj7_A          127 AAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP  161 (408)
T ss_dssp             HHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred             HHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence            74                     458999999975

>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1

Probab=96.15  E-value=0.078  Score=44.50  Aligned_cols=128  Identities=13%  Similarity=0.094  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhh-CCCeEEEEecCCCCchhHhhhhccCCc
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-RGIKIIIVGDGVEAHLSGVAAANSQIL  132 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~-~~~~V~IavAG~sa~L~gvvA~~t~~P  132 (196)
                      .++++.+.   ..-.+.+.+++.+++...++.+..  ...++..+.++++.. .+++|||+-.|.    +..+-.+++.|
T Consensus        14 ~ii~i~~~---~~L~~~~~~i~~e~~~~~~I~vi~--~~le~av~~a~~~~~~~~~dVIISRGgt----a~~Lr~~~~iP   84 (225)
T 2pju_A           14 PVIWTVSV---TRLFELFRDISLEFDHLANITPIQ--LGFEKAVTYIRKKLANERCDAIIAAGSN----GAYLKSRLSVP   84 (225)
T ss_dssp             CEEEEECC---HHHHHHHHHHHTTTTTTCEEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEHHH----HHHHHTTCSSC
T ss_pred             CEEEEEch---HHHHHHHHHHHHhhCCCceEEEec--CcHHHHHHHHHHHHhcCCCeEEEeCChH----HHHHHhhCCCC
Confidence            45555543   233335666667888777877743  345777777777544 469999996555    44556678899


Q ss_pred             EEEecCCCCCCChhhhhhhhcCCCC--CeeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 029271          133 VIRVPLLSEDWSEDDVINSIRMPSH--VQVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  195 (196)
Q Consensus       133 VIgvP~~~~~~~G~DLlS~lqmPsG--vpvatV~I~~~~nAA~~AaqILa~~--------d~~l~~kl~~~r~  195 (196)
                      ||-+|++     |.|++..++....  -.++.|+-.+..+.+-.-.++|++.        .+++.+.++..++
T Consensus        85 VV~I~vs-----~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~  152 (225)
T 2pju_A           85 VILIKPS-----GYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA  152 (225)
T ss_dssp             EEEECCC-----HHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred             EEEecCC-----HHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence            9999875     5775555554222  2488888888888887788899865        4577777766654

>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*

Probab=96.14  E-value=0.022  Score=50.45  Aligned_cols=86  Identities=21%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCC---CeEEEEecCC-CCchhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGV-EAHLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~---~~V~IavAG~-sa~L~gvv  125 (196)
                      .++.||++....--+.+++.+.|+.. +.++..+..   .+++.+.+.++.+.+.+.+   .+++||+.|+ ..-+++++
T Consensus        35 ~k~liVtd~~v~~~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~  113 (368)
T 2gru_A           35 DQYIMISDSGVPDSIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVA  113 (368)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHH
T ss_pred             CEEEEEECCcHHHHHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHH
Confidence            58999999888877899999999766 666544432   6788889998888887777   5899999886 56799999


Q ss_pred             hh--ccCCcEEEecCC
Q 029271          126 AA--NSQILVIRVPLL  139 (196)
Q Consensus       126 A~--~t~~PVIgvP~~  139 (196)
                      |+  ....|+|.+|+.
T Consensus       114 Aa~~~rgip~i~IPTT  129 (368)
T 2gru_A          114 AGMMFRGIALIHVPTT  129 (368)
T ss_dssp             HHHBTTCCEEEEEECS
T ss_pred             HHHhcCCCCEEEECCc
Confidence            96  457999999994

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=95.99  E-value=0.34  Score=38.89  Aligned_cols=86  Identities=14%  Similarity=0.062  Sum_probs=61.8

Q ss_pred             CCCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271           50 ADAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  126 (196)
Q Consensus        50 ~~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA  126 (196)
                      ..+.+|++++-+.++-   ...+.+.+.++++|+  ++.+...+..+++..++++.+..++++-||............+.
T Consensus         3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~   80 (291)
T 3l49_A            3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGG--TAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ   80 (291)
T ss_dssp             CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence            4456899999877763   456778888889986  66667788888888889998888889877765544334444443


Q ss_pred             --hccCCcEEEec
Q 029271          127 --ANSQILVIRVP  137 (196)
Q Consensus       127 --~~t~~PVIgvP  137 (196)
                        .....|||.+-
T Consensus        81 ~~~~~~iPvV~~~   93 (291)
T 3l49_A           81 KINDAGIPLFTVD   93 (291)
T ss_dssp             HHHHTTCCEEEES
T ss_pred             HHHHCCCcEEEec
Confidence              23578998763

>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A

Probab=95.90  E-value=0.015  Score=52.25  Aligned_cols=86  Identities=15%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCC---CeEEEEecCCC-CchhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGVE-AHLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~---~~V~IavAG~s-a~L~gvv  125 (196)
                      .+|.||++....- .++++.+.|++-|+++++-+..   .+++.+.+.++.+.+.+.+   .+++||+.|++ .-+++++
T Consensus        44 ~rvlIVtd~~v~~-~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~  122 (368)
T 3qbe_A           44 HKVAVVHQPGLAE-TAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFA  122 (368)
T ss_dssp             SEEEEEECGGGHH-HHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHH
T ss_pred             CEEEEEECccHHH-HHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence            6899999987654 5899999999999987765542   5778888988888877655   48999999885 5689999


Q ss_pred             hh--ccCCcEEEecCC
Q 029271          126 AA--NSQILVIRVPLL  139 (196)
Q Consensus       126 A~--~t~~PVIgvP~~  139 (196)
                      |+  ....|+|.+|+.
T Consensus       123 Aa~~~rgip~i~IPTT  138 (368)
T 3qbe_A          123 AATWLRGVSIVHLPTT  138 (368)
T ss_dssp             HHHGGGCCEEEEEECS
T ss_pred             HHHhccCCcEEEECCC
Confidence            84  478999999996

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=95.81  E-value=0.38  Score=38.85  Aligned_cols=83  Identities=11%  Similarity=0.087  Sum_probs=59.4

Q ss_pred             CCCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-
Q 029271           51 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  126 (196)
Q Consensus        51 ~~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-  126 (196)
                      .+..|++++.+.++   ....+.+.+.++++|+  ++.+...+..++...++++.+..++++-+|......  ....+. 
T Consensus         7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~~   82 (291)
T 3egc_A            7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGY--SVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG--EHDYLRT   82 (291)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--CCHHHHH
T ss_pred             CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--ChHHHHH
Confidence            35689999988777   3556677788888885  666777888888888899999888897666544432  233333 


Q ss_pred             -hccCCcEEEec
Q 029271          127 -ANSQILVIRVP  137 (196)
Q Consensus       127 -~~t~~PVIgvP  137 (196)
                       ....+||+.+=
T Consensus        83 ~~~~~iPvV~~~   94 (291)
T 3egc_A           83 ELPKTFPIVAVN   94 (291)
T ss_dssp             SSCTTSCEEEES
T ss_pred             hhccCCCEEEEe
Confidence             24578888654

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=95.79  E-value=0.63  Score=38.02  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             CeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271           53 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  127 (196)
Q Consensus        53 ~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--  127 (196)
                      .+|++++-+.++   ....+.+.+.++++|+  ++.+......++...++++.+..++++.||........+...+.-  
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   80 (313)
T 3m9w_A            3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGA--KVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK   80 (313)
T ss_dssp             CEEEEEESCCSSSTTHHHHHHHHHHHHHTSC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence            578888876443   5667788888899986  566667788888888899988888998777776666665555543  


Q ss_pred             ccCCcEEEec
Q 029271          128 NSQILVIRVP  137 (196)
Q Consensus       128 ~t~~PVIgvP  137 (196)
                      ...+|||.+=
T Consensus        81 ~~~iPvV~~~   90 (313)
T 3m9w_A           81 QEGIKVLAYD   90 (313)
T ss_dssp             TTTCEEEEES
T ss_pred             HCCCeEEEEC
Confidence            3578998764

>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*

Probab=95.71  E-value=0.0098  Score=52.19  Aligned_cols=86  Identities=15%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvv  125 (196)
                      .++.||++....-.+.+++.+.| +-| .+++.+..   .+++.+.+.+..+.+.+.++   ++|||+.|+ ..-+++++
T Consensus        32 ~~~liVtd~~~~~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~v  109 (354)
T 1xah_A           32 DQSFLLIDEYVNQYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFV  109 (354)
T ss_dssp             SCEEEEEEHHHHHHHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHH
T ss_pred             CeEEEEECCcHHHHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHH
Confidence            57999997654444677788888 777 66655543   57899999999999998888   899999887 55699999


Q ss_pred             hh--ccCCcEEEecCCC
Q 029271          126 AA--NSQILVIRVPLLS  140 (196)
Q Consensus       126 A~--~t~~PVIgvP~~~  140 (196)
                      |+  ....|+|.||+..
T Consensus       110 A~~~~rgip~i~IPTT~  126 (354)
T 1xah_A          110 AATLLRGVHFIQVPTTI  126 (354)
T ss_dssp             HHHBTTCCEEEEEECST
T ss_pred             HHHhccCCCEEEECCcc
Confidence            95  5789999999974

>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.71  E-value=0.0052  Score=54.79  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=63.4

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC-chhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa-~L~gvvA~~t~~  131 (196)
                      .+|.||++... ....+++.+.|+   -.+.+.-...+.+.+.+.+.++.+.+.++++||++.|++. -++..+|....+
T Consensus        38 ~rvliVtd~~~-~~~~~~v~~~L~---~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~  113 (364)
T 3iv7_A           38 AKVMVIAGERE-MSIAHKVASEIE---VAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMTTAL  113 (364)
T ss_dssp             SSEEEECCGGG-HHHHHHHTTTSC---CSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHCC
T ss_pred             CEEEEEECCCH-HHHHHHHHHHcC---CCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence            47999998763 344454444443   2222323346888899999999999999999999999965 488899999999


Q ss_pred             cEEEecCCC
Q 029271          132 LVIRVPLLS  140 (196)
Q Consensus       132 PVIgvP~~~  140 (196)
                      |+|.||+..
T Consensus       114 P~i~IPTTa  122 (364)
T 3iv7_A          114 PIVAIPTTY  122 (364)
T ss_dssp             CEEEEECSS
T ss_pred             CEEEEcCCc
Confidence            999999975

>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1

Probab=95.52  E-value=0.012  Score=51.76  Aligned_cols=83  Identities=13%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE--cccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL--PPHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAA  126 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~--SaHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvvA  126 (196)
                      .+|.||++....- +.+++.+.|+ +++.  +-+.  -.+++.+.+.++.+.+.+.++   +++|++.|+ ..-+++++|
T Consensus        29 ~kvliVtd~~v~~-~~~~v~~~L~-~~~~--~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A  104 (348)
T 1ujn_A           29 GPAALLFDRRVEG-FAQEVAKALG-VRHL--LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVA  104 (348)
T ss_dssp             SCEEEEEEGGGHH-HHHHHHHHHT-CCCE--EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHH
T ss_pred             CEEEEEECCcHHH-HHHHHHHHhc-cCeE--EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHH
Confidence            4899999887666 8888888887 5554  2222  367888999999888877666   799999876 567999999


Q ss_pred             h--ccCCcEEEecCC
Q 029271          127 A--NSQILVIRVPLL  139 (196)
Q Consensus       127 ~--~t~~PVIgvP~~  139 (196)
                      +  ....|+|.||+.
T Consensus       105 ~~~~rgip~i~IPTT  119 (348)
T 1ujn_A          105 ATYLRGVAYLAFPTT  119 (348)
T ss_dssp             HHBTTCCEEEEEECS
T ss_pred             HHhccCCCEEEecCc
Confidence            5  567899999995

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=95.42  E-value=0.3  Score=40.02  Aligned_cols=123  Identities=11%  Similarity=0.149  Sum_probs=77.2

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC---chhHhh
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA---HLSGVA  125 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa---~L~gvv  125 (196)
                      +..|++++.+.++   ....+.+.+.++++|..  +-+...+..++...++++.+..++++-+|.......   .+.-..
T Consensus        15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~   92 (303)
T 3kke_A           15 SGTIGLIVPDVNNAVFADMFSGVQMAASGHSTD--VLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVL   92 (303)
T ss_dssp             --CEEEEESCTTSTTHHHHHHHHHHHHHHTTCC--EEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHH
T ss_pred             CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCE--EEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHh
Confidence            4579999987776   56677888888999875  456677888888888999888888975555544333   222222


Q ss_pred             hhccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccC------------CHHHHHHHHHH
Q 029271          126 AANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA------------DEDLLERIRKY  193 (196)
Q Consensus       126 A~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~------------d~~l~~kl~~~  193 (196)
                        . .+|||.+=...               ++ ++..|++|+-.++.+++-.++...            .....+|++.|
T Consensus        93 --~-~iPvV~i~~~~---------------~~-~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf  153 (303)
T 3kke_A           93 --E-GVPAVTINSRV---------------PG-RVGSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY  153 (303)
T ss_dssp             --T-TSCEEEESCCC---------------TT-CCCEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred             --C-CCCEEEECCcC---------------CC-CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence              2 78888763221               22 345566676655555544444332            23445667666


Q ss_pred             Hh
Q 029271          194 VE  195 (196)
Q Consensus       194 r~  195 (196)
                      ++
T Consensus       154 ~~  155 (303)
T 3kke_A          154 LE  155 (303)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=94.92  E-value=0.66  Score=38.53  Aligned_cols=84  Identities=8%  Similarity=0.087  Sum_probs=57.2

Q ss_pred             CCCeEEEEEcC--CCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh
Q 029271           51 DAPIVGIIMES--DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA  125 (196)
Q Consensus        51 ~~~~V~IimGS--~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv  125 (196)
                      .+..|+++..+  .++   ....+.+.+.+++.|.  ++-+...+..++.-.++++.+..++++-+|........ ..+.
T Consensus        60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~  136 (338)
T 3dbi_A           60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGR--QLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEID  136 (338)
T ss_dssp             CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTC--EEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-HHHH
T ss_pred             CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHH
Confidence            34589999987  444   3566777888888986  56677788888888888888888889766655433222 2222


Q ss_pred             --hhccCCcEEEec
Q 029271          126 --AANSQILVIRVP  137 (196)
Q Consensus       126 --A~~t~~PVIgvP  137 (196)
                        ......||+-+=
T Consensus       137 ~~~~~~~iPvV~~~  150 (338)
T 3dbi_A          137 DIIDAHSQPIMVLN  150 (338)
T ss_dssp             HHHHHCSSCEEEES
T ss_pred             HHHHcCCCCEEEEc
Confidence              234568888653

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=94.81  E-value=1.2  Score=35.26  Aligned_cols=111  Identities=11%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  126 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--  126 (196)
                      +.+|++++.+.++-   ...+.+.+.++++|.  ++.+...+..++...++++.+..++++-+|........ ...+.  
T Consensus         2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~~   78 (272)
T 3o74_A            2 TRTLGFILPDLENPSYARIAKQLEQGARARGY--QLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE-DDSYREL   78 (272)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-CCHHHHH
T ss_pred             ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc-HHHHHHH
Confidence            35799999887763   445677778888887  55566778888888889998888889766665544222 12221  


Q ss_pred             hccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHc
Q 029271          127 ANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLG  180 (196)
Q Consensus       127 ~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa  180 (196)
                      .....||+.+=...               ++.++..|+.|+-.++-+++-.++.
T Consensus        79 ~~~~iPvV~~~~~~---------------~~~~~~~V~~d~~~~~~~a~~~L~~  117 (272)
T 3o74_A           79 QDKGLPVIAIDRRL---------------DPAHFCSVISDDRDASRQLAASLLS  117 (272)
T ss_dssp             HHTTCCEEEESSCC---------------CTTTCEEEEECHHHHHHHHHHHHHT
T ss_pred             HHcCCCEEEEccCC---------------CccccCEEEEchHHHHHHHHHHHHH
Confidence            23578888653221               1112345666766655555544443

>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}

Probab=94.67  E-value=1.1  Score=37.32  Aligned_cols=81  Identities=12%  Similarity=0.131  Sum_probs=56.9

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh--h
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--A  126 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv--A  126 (196)
                      +..|+++..+.++   ....+.+.+.+++.|.  ++-+...+..++...++++.+..++++-+|........  ..+  .
T Consensus        62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--~~~~~l  137 (339)
T 3h5o_A           62 SRTVLVLIPSLANTVFLETLTGIETVLDAAGY--QMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE--PFERIL  137 (339)
T ss_dssp             -CEEEEEESCSTTCTTHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--THHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--HHHHHH
Confidence            4579999877655   5677888889999986  56677788889988899998888888755544322221  222  2


Q ss_pred             hccCCcEEEe
Q 029271          127 ANSQILVIRV  136 (196)
Q Consensus       127 ~~t~~PVIgv  136 (196)
                      ....+||+-+
T Consensus       138 ~~~~iPvV~~  147 (339)
T 3h5o_A          138 SQHALPVVYM  147 (339)
T ss_dssp             HHTTCCEEEE
T ss_pred             hcCCCCEEEE
Confidence            3457898876

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=94.52  E-value=0.67  Score=37.50  Aligned_cols=83  Identities=6%  Similarity=0.085  Sum_probs=51.3

Q ss_pred             CCCeEEEEEcCCCC-----HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh
Q 029271           51 DAPIVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA  125 (196)
Q Consensus        51 ~~~~V~IimGS~SD-----~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv  125 (196)
                      .+..|++++.+.+|     ....+.+.+.++++|.  ++-+......++...++.+.+..++++-+|........  ..+
T Consensus         7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~   82 (288)
T 3gv0_A            7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQY--HLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND--PRV   82 (288)
T ss_dssp             CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSC--EEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC--HHH
T ss_pred             CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCC--EEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc--HHH
Confidence            35689999987665     2445556666777775  66666666666666667666767788755554322221  222


Q ss_pred             h--hccCCcEEEec
Q 029271          126 A--ANSQILVIRVP  137 (196)
Q Consensus       126 A--~~t~~PVIgvP  137 (196)
                      .  -...+|||.+=
T Consensus        83 ~~l~~~~iPvV~i~   96 (288)
T 3gv0_A           83 RFMTERNMPFVTHG   96 (288)
T ss_dssp             HHHHHTTCCEEEES
T ss_pred             HHHhhCCCCEEEEC
Confidence            2  23578988654

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=94.42  E-value=0.69  Score=37.09  Aligned_cols=83  Identities=12%  Similarity=0.052  Sum_probs=56.3

Q ss_pred             CCCeEEEEEcC-----CCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh
Q 029271           51 DAPIVGIIMES-----DLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS  122 (196)
Q Consensus        51 ~~~~V~IimGS-----~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~  122 (196)
                      .+.+|++++.+     .++.   ...+.+.+.++++|.  ++.+...+..++...++++.+..++++-+|........  
T Consensus         7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~--   82 (292)
T 3k4h_A            7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGY--ALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND--   82 (292)
T ss_dssp             CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTC--EEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC--
T ss_pred             CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence            45689999987     4442   556677788888986  56667777777777888888888888766665443322  


Q ss_pred             Hhhh--hccCCcEEEec
Q 029271          123 GVAA--ANSQILVIRVP  137 (196)
Q Consensus       123 gvvA--~~t~~PVIgvP  137 (196)
                      ..+.  ....+|||.+=
T Consensus        83 ~~~~~l~~~~iPvV~~~   99 (292)
T 3k4h_A           83 RIIQYLHEQNFPFVLIG   99 (292)
T ss_dssp             HHHHHHHHTTCCEEEES
T ss_pred             HHHHHHHHCCCCEEEEC
Confidence            2222  24578888763

>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}

Probab=94.38  E-value=1.2  Score=36.84  Aligned_cols=82  Identities=11%  Similarity=0.122  Sum_probs=53.2

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  127 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-  127 (196)
                      +..|++++...++-   ...+.+.+.+++.|.  ++-+...+..++...++++.+..++++-+|.......  ...+.- 
T Consensus        63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~~~~~~l  138 (332)
T 2o20_A           63 TTTVGVILPTITSTYFAAITRGVDDIASMYKY--NMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD--EKIRTSL  138 (332)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC--HHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC--EEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC--HHHHHHH
Confidence            45799999766553   345566777788886  5555666777777778888887888876665543221  122221 


Q ss_pred             -ccCCcEEEec
Q 029271          128 -NSQILVIRVP  137 (196)
Q Consensus       128 -~t~~PVIgvP  137 (196)
                       ....||+.+-
T Consensus       139 ~~~~iPvV~~~  149 (332)
T 2o20_A          139 KNSRTPVVLVG  149 (332)
T ss_dssp             HHHCCCEEEES
T ss_pred             HhCCCCEEEEc
Confidence             3568888763

>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}

Probab=94.33  E-value=1.6  Score=36.01  Aligned_cols=86  Identities=12%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             CCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCC--CeEEEEecCCCCchhHhh
Q 029271           51 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG--IKIIIVGDGVEAHLSGVA  125 (196)
Q Consensus        51 ~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~--~~V~IavAG~sa~L~gvv  125 (196)
                      .+.+|+++..+.++-   ...+.+.+.+++.|+.+  .+......++...++++.+..++  ++-||........+...+
T Consensus         4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l--~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~   81 (332)
T 2rjo_A            4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPY--VPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIV   81 (332)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCE--EEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHH
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEE--EEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHH
Confidence            456899999876663   45567777888999754  45566677777777888887778  887776554433333333


Q ss_pred             hh--ccCCcEEEecC
Q 029271          126 AA--NSQILVIRVPL  138 (196)
Q Consensus       126 A~--~t~~PVIgvP~  138 (196)
                      .-  ....||+.+-.
T Consensus        82 ~~~~~~~iPvV~~~~   96 (332)
T 2rjo_A           82 EACSKAGAYVTTIWN   96 (332)
T ss_dssp             HHHHHHTCEEEEESC
T ss_pred             HHHHHCCCeEEEECC
Confidence            22  35689987643

>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2

Probab=94.27  E-value=0.0041  Score=54.97  Aligned_cols=85  Identities=12%  Similarity=0.079  Sum_probs=60.1

Q ss_pred             CeEEEEEcCCCCHHH-HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhhhccC
Q 029271           53 PIVGIIMESDLDLPV-MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQ  130 (196)
Q Consensus        53 ~~V~IimGS~SD~~~-~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA~~t~  130 (196)
                      .++.||++....... .+++.+.|++.|  +++.+.+-+.+.+.+.+..+.+.. ++++||++.|+ ..-++..+|-...
T Consensus        42 ~~~liVtd~~~~~~~~~~~v~~~L~~~g--~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~~~  118 (376)
T 1kq3_A           42 ERAFVVIDDFVDKNVLGENFFSSFTKVR--VNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYKLK  118 (376)
T ss_dssp             SEEEEEECHHHHHHTTCTTGGGGCSSSE--EEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECccHHhhccHHHHHHHHHHcC--CeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHhcC
Confidence            589999975432222 445555555555  344444445555677777777777 88999999886 5569999998899


Q ss_pred             CcEEEecCCC
Q 029271          131 ILVIRVPLLS  140 (196)
Q Consensus       131 ~PVIgvP~~~  140 (196)
                      +|+|.||+..
T Consensus       119 ~p~i~IPTTa  128 (376)
T 1kq3_A          119 KPVVIVPTIA  128 (376)
T ss_dssp             CCEEEEESSC
T ss_pred             CCEEEecCcc
Confidence            9999999975

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=94.24  E-value=1.1  Score=36.27  Aligned_cols=82  Identities=6%  Similarity=-0.029  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHH---HHHHHhhCCCeEEEEecCCCCchhHhh
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS---YALSAKERGIKIIIVGDGVEAHLSGVA  125 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~---~~~~~e~~~~~V~IavAG~sa~L~gvv  125 (196)
                      +.+|+++....+|   ....+.+.+.+++.|.  ++-+......++...+   +++.+..++++-+|.......  ...+
T Consensus         8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~   83 (290)
T 2rgy_A            8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHR--HVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--DEDL   83 (290)
T ss_dssp             CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTC--EEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--HHHH
T ss_pred             CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--HHHH
Confidence            4589999876655   3455667777888886  5556666667777777   788887888876666544333  2232


Q ss_pred             h--hccCCcEEEec
Q 029271          126 A--ANSQILVIRVP  137 (196)
Q Consensus       126 A--~~t~~PVIgvP  137 (196)
                      .  .....||+.+-
T Consensus        84 ~~l~~~~iPvV~~~   97 (290)
T 2rgy_A           84 DELHRMHPKMVFLN   97 (290)
T ss_dssp             HHHHHHCSSEEEES
T ss_pred             HHHhhcCCCEEEEc
Confidence            2  23568998763

>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}

Probab=94.13  E-value=0.016  Score=50.93  Aligned_cols=85  Identities=18%  Similarity=0.111  Sum_probs=63.9

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc---ccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA  125 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S---aHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvv  125 (196)
                      .++.||++......+.+++.+.|+..++  ++.+..   .|++.+.+.++.+.+.+.++   +++||+.|+ ..-+++++
T Consensus        27 ~~~livtd~~v~~~~~~~v~~~L~~~~~--~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~  104 (343)
T 3clh_A           27 QKALIISDSIVAGLHLPYLLERLKALEV--RVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFA  104 (343)
T ss_dssp             SCEEEEEEHHHHTTTHHHHHTTEECSCE--EEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHH
T ss_pred             CEEEEEECCcHHHHHHHHHHHHHHhCCc--EEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHH
Confidence            4799998764433356666666654443  433332   57889999999999999889   999999887 46699999


Q ss_pred             h--hccCCcEEEecCC
Q 029271          126 A--ANSQILVIRVPLL  139 (196)
Q Consensus       126 A--~~t~~PVIgvP~~  139 (196)
                      |  .....|+|.||+.
T Consensus       105 A~~~~rgip~i~IPTT  120 (343)
T 3clh_A          105 SSIYFRGIDFINIPTT  120 (343)
T ss_dssp             HHHBTTCCEEEEEECS
T ss_pred             HHHhccCCCEEEeCCc
Confidence            9  4678999999997

>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}

Probab=94.09  E-value=1.4  Score=36.45  Aligned_cols=79  Identities=11%  Similarity=0.140  Sum_probs=52.7

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      +..|++++...++-   ...+.+.+.+++.|.  ++-+...+..++...++++.+..++++-+| .......  ..+ ..
T Consensus        60 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~--~~l-~~  133 (330)
T 3ctp_A           60 SKTIGLMVPNISNPFFNQMASVIEEYAKNKGY--TLFLCNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQCE--DEY-AN  133 (330)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEE-EETCCCS--GGG-TT
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCCH--HHH-Hh
Confidence            45799999776553   345667777788886  455566677777777888888888898777 5433221  122 24


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      ..+||+.+
T Consensus       134 ~~iPvV~~  141 (330)
T 3ctp_A          134 IDIPVVAF  141 (330)
T ss_dssp             CCSCEEEE
T ss_pred             cCCCEEEE
Confidence            56788865

>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}

Probab=93.95  E-value=0.4  Score=39.02  Aligned_cols=81  Identities=11%  Similarity=0.067  Sum_probs=56.2

Q ss_pred             CCCeEEEEEcCCCC----HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh-
Q 029271           51 DAPIVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-  125 (196)
Q Consensus        51 ~~~~V~IimGS~SD----~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv-  125 (196)
                      .+..|++++.+.++    ....+.+.+.++++|.  ++-+...+..++...++++.+..++++-+|........   .+ 
T Consensus        12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---~~~   86 (301)
T 3miz_A           12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANANGK--TILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---VDP   86 (301)
T ss_dssp             CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---CCC
T ss_pred             CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---HHH
Confidence            35689999977665    2788889999999986  56667778888888889998888888655544322221   11 


Q ss_pred             -hhccCCcEEEe
Q 029271          126 -AANSQILVIRV  136 (196)
Q Consensus       126 -A~~t~~PVIgv  136 (196)
                       .....+|||.+
T Consensus        87 ~~~~~~iPvV~~   98 (301)
T 3miz_A           87 ESGDVSIPTVMI   98 (301)
T ss_dssp             CCTTCCCCEEEE
T ss_pred             HHHhCCCCEEEE
Confidence             12346787765

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=93.93  E-value=2  Score=34.38  Aligned_cols=85  Identities=12%  Similarity=0.086  Sum_probs=60.7

Q ss_pred             CCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271           51 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  127 (196)
Q Consensus        51 ~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~  127 (196)
                      .+.+|++++.+.++-   ...+.+.+.++++|+  ++.+...+..++...++++.+..++++-||........+...+.-
T Consensus         7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~   84 (293)
T 3l6u_A            7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKY--EALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE   84 (293)
T ss_dssp             --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH
T ss_pred             CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence            346899999887773   445667778888886  566677788888888899988888898777666555555444433


Q ss_pred             --ccCCcEEEec
Q 029271          128 --NSQILVIRVP  137 (196)
Q Consensus       128 --~t~~PVIgvP  137 (196)
                        ...+||+.+=
T Consensus        85 ~~~~~iPvV~~~   96 (293)
T 3l6u_A           85 AKKAGIPVFAID   96 (293)
T ss_dssp             HHHTTCCEEEES
T ss_pred             HHHcCCCEEEec
Confidence              3578998763

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=93.88  E-value=2  Score=34.27  Aligned_cols=84  Identities=10%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhh
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAA  127 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~  127 (196)
                      +.+|++++.+.++-   ...+.+.+.+++.|.  ++.+......++...++++.+..++++-+|...... ..+-..+..
T Consensus         7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~   84 (289)
T 1dbq_A            7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGY--TLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE   84 (289)
T ss_dssp             -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH
T ss_pred             CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh
Confidence            45899999766552   345667777888886  555566777888888888888888887666654433 233333432


Q ss_pred             ccCCcEEEec
Q 029271          128 NSQILVIRVP  137 (196)
Q Consensus       128 ~t~~PVIgvP  137 (196)
                      ....|||.+-
T Consensus        85 ~~~iPvV~~~   94 (289)
T 1dbq_A           85 YRHIPMVVMD   94 (289)
T ss_dssp             TTTSCEEEEE
T ss_pred             ccCCCEEEEc
Confidence            3578988763

>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}

Probab=93.86  E-value=1.2  Score=35.99  Aligned_cols=81  Identities=6%  Similarity=0.037  Sum_probs=50.8

Q ss_pred             CCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271           51 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  127 (196)
Q Consensus        51 ~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~  127 (196)
                      .+..|++++ +.++-   ...+.+.+.+++.|.  ++-+...+..++ -.++++.+..++++-+|........  ..+..
T Consensus        11 ~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~-~~~~~~~l~~~~vdgiIi~~~~~~~--~~~~~   84 (289)
T 3k9c_A           11 SSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGY--DVMLSAVAPSRA-EKVAVQALMRERCEAAILLGTRFDT--DELGA   84 (289)
T ss_dssp             --CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTC--EEEEEEEBTTBC-HHHHHHHHTTTTEEEEEEETCCCCH--HHHHH
T ss_pred             CCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHH-HHHHHHHHHhCCCCEEEEECCCCCH--HHHHH
Confidence            345899999 65552   345667777888885  556666666666 6677788877888766665543332  22221


Q ss_pred             -ccCCcEEEec
Q 029271          128 -NSQILVIRVP  137 (196)
Q Consensus       128 -~t~~PVIgvP  137 (196)
                       ...+|||-+=
T Consensus        85 ~~~~iPvV~i~   95 (289)
T 3k9c_A           85 LADRVPALVVA   95 (289)
T ss_dssp             HHTTSCEEEES
T ss_pred             HHcCCCEEEEc
Confidence             1278988753

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=93.85  E-value=2  Score=34.26  Aligned_cols=110  Identities=12%  Similarity=0.109  Sum_probs=70.3

Q ss_pred             CCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271           51 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  127 (196)
Q Consensus        51 ~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~  127 (196)
                      .+..|++++.+.+|-   ...+.+.+.+++.|+  ++-+...+..++...++++.+..++++-+|......   ...+.-
T Consensus         6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~   80 (276)
T 3jy6_A            6 SSKLIAVIVANIDDYFSTELFKGISSILESRGY--IGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---PQTVQE   80 (276)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTC--EEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---HHHHHH
T ss_pred             CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---HHHHHH
Confidence            345899999887663   445566677778875  666777888888888899988888897666654443   444433


Q ss_pred             --ccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHc
Q 029271          128 --NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLG  180 (196)
Q Consensus       128 --~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa  180 (196)
                        ...+|||.+=...               ++.++..|+.|+..++.+++-.++.
T Consensus        81 l~~~~iPvV~i~~~~---------------~~~~~~~V~~D~~~~g~~a~~~L~~  120 (276)
T 3jy6_A           81 ILHQQMPVVSVDREM---------------DACPWPQVVTDNFEAAKAATTAFRQ  120 (276)
T ss_dssp             HHTTSSCEEEESCCC---------------TTCSSCEEECCHHHHHHHHHHHHHT
T ss_pred             HHHCCCCEEEEeccc---------------CCCCCCEEEEChHHHHHHHHHHHHH
Confidence              3578988763221               1112345666665555554444443

>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}

Probab=93.77  E-value=0.9  Score=36.70  Aligned_cols=82  Identities=5%  Similarity=0.038  Sum_probs=53.2

Q ss_pred             CCeEEEEEcC-C---CC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh
Q 029271           52 APIVGIIMES-D---LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  124 (196)
Q Consensus        52 ~~~V~IimGS-~---SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv  124 (196)
                      +..|++++.. .   ++   ....+.+.+.+++.|.  ++.+......++...++++.+..++++-+|........  ..
T Consensus         4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~   79 (287)
T 3bbl_A            4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNY--FVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND--PR   79 (287)
T ss_dssp             CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTC--EEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC--HH
T ss_pred             eeEEEEEecccccccCChhHHHHHHHHHHHHHHcCC--EEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc--HH
Confidence            3578888765 3   33   4667778888889985  55566666666666777777777888766665443222  22


Q ss_pred             hh--hccCCcEEEec
Q 029271          125 AA--ANSQILVIRVP  137 (196)
Q Consensus       125 vA--~~t~~PVIgvP  137 (196)
                      +.  .....|||.+-
T Consensus        80 ~~~l~~~~iPvV~~~   94 (287)
T 3bbl_A           80 VQFLLKQKFPFVAFG   94 (287)
T ss_dssp             HHHHHHTTCCEEEES
T ss_pred             HHHHHhcCCCEEEEC
Confidence            21  23568998763

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=93.74  E-value=1  Score=36.75  Aligned_cols=83  Identities=10%  Similarity=0.100  Sum_probs=55.9

Q ss_pred             CCCeEEEEEcC-----CCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh
Q 029271           51 DAPIVGIIMES-----DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS  122 (196)
Q Consensus        51 ~~~~V~IimGS-----~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~  122 (196)
                      .+..|++++.+     .++   ....+.+.+.++++|.  ++-+...+..++...++++.+..++++-+|........  
T Consensus        21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--   96 (305)
T 3huu_A           21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGY--STRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD--   96 (305)
T ss_dssp             CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTC--EEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC--
T ss_pred             CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc--
Confidence            35689999987     444   3456677788888986  56667777777777888888888889766655433222  


Q ss_pred             Hhhh--hccCCcEEEec
Q 029271          123 GVAA--ANSQILVIRVP  137 (196)
Q Consensus       123 gvvA--~~t~~PVIgvP  137 (196)
                      ..+.  ....+|||.+=
T Consensus        97 ~~~~~l~~~~iPvV~i~  113 (305)
T 3huu_A           97 PIEHLLNEFKVPYLIVG  113 (305)
T ss_dssp             HHHHHHHHTTCCEEEES
T ss_pred             HHHHHHHHcCCCEEEEC
Confidence            2222  23578888763

>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}

Probab=93.73  E-value=1.3  Score=35.72  Aligned_cols=81  Identities=10%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             CCCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-C-chhHhh
Q 029271           51 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-A-HLSGVA  125 (196)
Q Consensus        51 ~~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a-~L~gvv  125 (196)
                      .+.+|++++...++   ....+.+.+.+++.|.  ++.+......++...++++.+..++++-+|...... . .+. -+
T Consensus         7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~-~l   83 (285)
T 3c3k_A            7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGY--RILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQ-NI   83 (285)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHH-HH
T ss_pred             CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH-HH
Confidence            34589999977666   2455667777888886  455566666777777788888788887666654432 1 122 22


Q ss_pred             hhccCCcEEEe
Q 029271          126 AANSQILVIRV  136 (196)
Q Consensus       126 A~~t~~PVIgv  136 (196)
                      .  ...||+.+
T Consensus        84 ~--~~iPvV~~   92 (285)
T 3c3k_A           84 I--GAFPWVQC   92 (285)
T ss_dssp             H--TTSSEEEE
T ss_pred             h--cCCCEEEE
Confidence            2  57888876

>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}

Probab=93.61  E-value=0.9  Score=38.24  Aligned_cols=126  Identities=13%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  126 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--  126 (196)
                      +..|+++....++-   ...+.+.+.+++.|...  -+......++...++++.+..++++-||.......  ...+.  
T Consensus        66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~~~~~~l  141 (348)
T 3bil_A           66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLAT--IITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC--ANQLEDL  141 (348)
T ss_dssp             --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCE--EEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG--HHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE--EEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC--hHHHHHH
Confidence            34799999766653   45567777888888754  45556667777778888888888875555443222  12222  


Q ss_pred             hccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHcc------------CCHHHHHHHHHHH
Q 029271          127 ANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI------------ADEDLLERIRKYV  194 (196)
Q Consensus       127 ~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~------------~d~~l~~kl~~~r  194 (196)
                      ....+||+.+-....              ...++..|++|+..++-+++-.++..            ......+|++.|+
T Consensus       142 ~~~~iPvV~i~~~~~--------------~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~  207 (348)
T 3bil_A          142 QKQGMPVVLVDRELP--------------GDSTIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFK  207 (348)
T ss_dssp             HHC-CCEEEESSCCS--------------CC-CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHH
T ss_pred             HhCCCCEEEEcccCC--------------CCCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence            235688887632110              00123456667766555544444332            1234466777776


Q ss_pred             h
Q 029271          195 E  195 (196)
Q Consensus       195 ~  195 (196)
                      +
T Consensus       208 ~  208 (348)
T 3bil_A          208 A  208 (348)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C

Probab=93.56  E-value=1.5  Score=35.16  Aligned_cols=83  Identities=14%  Similarity=0.066  Sum_probs=59.1

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccC--CchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  126 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR--~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA  126 (196)
                      +.+|++++.+.+|-   ...+.+.+.++++|+  ++.+...+.  .++.-.++++.+..++++.||........+...+.
T Consensus         5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~   82 (304)
T 3o1i_D            5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQGV--NLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK   82 (304)
T ss_dssp             CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTC--EEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC--eEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence            45899999887773   445667777888886  566677777  77888888888888889877766655554444443


Q ss_pred             hc-cCCcEEEe
Q 029271          127 AN-SQILVIRV  136 (196)
Q Consensus       127 ~~-t~~PVIgv  136 (196)
                      -. ..+|||.+
T Consensus        83 ~~~~~iPvV~~   93 (304)
T 3o1i_D           83 SWVGNTPVFAT   93 (304)
T ss_dssp             HHTTTSCEEEC
T ss_pred             HHcCCCCEEEe
Confidence            22 57898876

>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}

Probab=93.55  E-value=1.3  Score=35.94  Aligned_cols=125  Identities=13%  Similarity=0.110  Sum_probs=70.7

Q ss_pred             CCCeEEEEEc----CCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH
Q 029271           51 DAPIVGIIME----SDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG  123 (196)
Q Consensus        51 ~~~~V~IimG----S~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g  123 (196)
                      .+..|++++.    +.++   ....+.+.+.+++.|....+  ...+. ++...++++.+..++++-+|........  .
T Consensus         5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~~--~   79 (294)
T 3qk7_A            5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLL--IPDEP-GEKYQSLIHLVETRRVDALIVAHTQPED--F   79 (294)
T ss_dssp             CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEE--EEECT-TCCCHHHHHHHHHTCCSEEEECSCCSSC--H
T ss_pred             ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEE--EeCCC-hhhHHHHHHHHHcCCCCEEEEeCCCCCh--H
Confidence            3458999997    4444   34566777888889875444  44443 5555667777777788755555443332  2


Q ss_pred             hhh--hccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccC------------CHHHHHH
Q 029271          124 VAA--ANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA------------DEDLLER  189 (196)
Q Consensus       124 vvA--~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~------------d~~l~~k  189 (196)
                      .+.  ....+||+.+=...               ++.++..|++||-.++.+++-.++...            .....+|
T Consensus        80 ~~~~l~~~~iPvV~~~~~~---------------~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R  144 (294)
T 3qk7_A           80 RLQYLQKQNFPFLALGRSH---------------LPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQR  144 (294)
T ss_dssp             HHHHHHHTTCCEEEESCCC---------------CSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHH
T ss_pred             HHHHHHhCCCCEEEECCCC---------------CCCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHH
Confidence            222  23568888653321               112245566676655555554444432            2334566


Q ss_pred             HHHHHh
Q 029271          190 IRKYVE  195 (196)
Q Consensus       190 l~~~r~  195 (196)
                      ++.|++
T Consensus       145 ~~Gf~~  150 (294)
T 3qk7_A          145 LQGYVQ  150 (294)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}

Probab=93.55  E-value=2.3  Score=33.90  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             CCCeEEEEEcCCC--CH---HHHHHHHHHHHHhCCCeEEEEEcc--cCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH
Q 029271           51 DAPIVGIIMESDL--DL---PVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG  123 (196)
Q Consensus        51 ~~~~V~IimGS~S--D~---~~~~~~~~~l~~~gi~~ev~V~Sa--HR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g  123 (196)
                      .+.+|++++.+.+  |.   ...+.+.+.+++.|.  ++.+...  +..+++..++++.+..++++-+|........+..
T Consensus         4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~   81 (289)
T 3brs_A            4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEI--KLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYD   81 (289)
T ss_dssp             -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTC--EEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHH
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCC--EEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHH
Confidence            3468999987765  42   344566777888885  5555554  6777777788888888889877766655555434


Q ss_pred             hhhh--ccCCcEEEec
Q 029271          124 VAAA--NSQILVIRVP  137 (196)
Q Consensus       124 vvA~--~t~~PVIgvP  137 (196)
                      .+.-  ....|||.+-
T Consensus        82 ~~~~~~~~~iPvV~~~   97 (289)
T 3brs_A           82 AAKEIKDAGIKLIVID   97 (289)
T ss_dssp             HHTTTGGGTCEEEEES
T ss_pred             HHHHHHHCCCcEEEEC
Confidence            4432  3568988763

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=93.53  E-value=2.4  Score=34.13  Aligned_cols=85  Identities=8%  Similarity=-0.015  Sum_probs=58.0

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  127 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~  127 (196)
                      ..+|+++.-+.++-   ...+.+.+.++++|+..  .+ ...+..+++..++++.+..++++-+|........+...+.-
T Consensus         4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~   81 (305)
T 3g1w_A            4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTV--EYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINK   81 (305)
T ss_dssp             -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEE--EEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHH
T ss_pred             CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEE--EEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHH
Confidence            35788888665553   34556777788898754  44 46778888888899988888898777665555555555532


Q ss_pred             --ccCCcEEEecC
Q 029271          128 --NSQILVIRVPL  138 (196)
Q Consensus       128 --~t~~PVIgvP~  138 (196)
                        ....|||.+-.
T Consensus        82 ~~~~~iPvV~~~~   94 (305)
T 3g1w_A           82 AVDAGIPIVLFDS   94 (305)
T ss_dssp             HHHTTCCEEEESS
T ss_pred             HHHCCCcEEEECC
Confidence              35789987643

>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}

Probab=93.44  E-value=0.053  Score=48.50  Aligned_cols=86  Identities=10%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCC---CeEEEEecCCCCc-hhHhhhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERG---IKIIIVGDGVEAH-LSGVAAA  127 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~---~~V~IavAG~sa~-L~gvvA~  127 (196)
                      .++.||++..---   ....+.|+.-|+.+.+ .-...+.+.+.+.+.++.+.+.+   +++||++.|+|.. ++..+|.
T Consensus        54 ~~~liVtd~~~~~---~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~  130 (375)
T 3rf7_A           54 DFVVFLVDDVHQH---KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSL  130 (375)
T ss_dssp             CCEEEEEEGGGTT---SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHH
T ss_pred             CeEEEEECchhhh---hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence            4677887643211   1344455555777643 12347788889999988888777   8999999999754 7888877


Q ss_pred             cc------------------CCcEEEecCCCC
Q 029271          128 NS------------------QILVIRVPLLSE  141 (196)
Q Consensus       128 ~t------------------~~PVIgvP~~~~  141 (196)
                      ..                  .+|+|.||+..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag  162 (375)
T 3rf7_A          131 MLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG  162 (375)
T ss_dssp             HTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred             HHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence            65                  689999999753

>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*

Probab=93.42  E-value=2.7  Score=34.29  Aligned_cols=82  Identities=16%  Similarity=0.148  Sum_probs=53.6

Q ss_pred             eEEEEEcCCCC--HHHHHHHHHHHHHhCCCeEEEEEc-ccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271           54 IVGIIMESDLD--LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  128 (196)
Q Consensus        54 ~V~IimGS~SD--~~~~~~~~~~l~~~gi~~ev~V~S-aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~  128 (196)
                      +|+++....++  ....+.+.+.++++|+.  +.+.. ....+++..++++.+..++++.+|.....+..+...+.-  .
T Consensus         3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~   80 (313)
T 2h3h_A            3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVD--TKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE   80 (313)
T ss_dssp             EEEEECSCSSHHHHHHHHHHHHHHHHHTCE--EEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred             EEEEEeCCCcHHHHHHHHHHHHHHHHcCCE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence            67888766554  23445566777888964  44543 366777777888888888898777766555544444432  3


Q ss_pred             cCCcEEEec
Q 029271          129 SQILVIRVP  137 (196)
Q Consensus       129 t~~PVIgvP  137 (196)
                      ...|||.+=
T Consensus        81 ~~iPvV~~~   89 (313)
T 2h3h_A           81 MGIPVVTLD   89 (313)
T ss_dssp             TTCCEEEES
T ss_pred             CCCeEEEeC
Confidence            568998763

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=93.38  E-value=2.5  Score=33.80  Aligned_cols=83  Identities=13%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             CeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--h
Q 029271           53 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A  127 (196)
Q Consensus        53 ~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~  127 (196)
                      .+|+++....++   ....+.+.+.+++.|+  ++.+......+++..++++.+..++++-+|........+...+.  .
T Consensus         3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~   80 (290)
T 2fn9_A            3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGY--EATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAK   80 (290)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHH
T ss_pred             eEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHH
Confidence            478999876655   2445566777888886  55566666677777788888877888877766544444333332  2


Q ss_pred             ccCCcEEEec
Q 029271          128 NSQILVIRVP  137 (196)
Q Consensus       128 ~t~~PVIgvP  137 (196)
                      ....||+.+-
T Consensus        81 ~~~iPvV~~~   90 (290)
T 2fn9_A           81 EAGIPVFCVD   90 (290)
T ss_dssp             HTTCCEEEES
T ss_pred             HCCCeEEEEe
Confidence            3568998763

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}

Probab=93.14  E-value=2.8  Score=33.73  Aligned_cols=127  Identities=13%  Similarity=0.157  Sum_probs=76.5

Q ss_pred             CCCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-
Q 029271           51 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  126 (196)
Q Consensus        51 ~~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-  126 (196)
                      .+.+|+++..+.++   ....+.+.+.+++.|+  ++-+...+..++...++++.+..++++-+|........ ...+. 
T Consensus        19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~~~~   95 (293)
T 2iks_A           19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGY--QLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-HPFYQR   95 (293)
T ss_dssp             CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTT-CHHHHT
T ss_pred             CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc-HHHHHH
Confidence            34589999876666   3455667777888886  55566677777877788888888888766665443322 22222 


Q ss_pred             -hccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccC------------CHHHHHHHHHH
Q 029271          127 -ANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIA------------DEDLLERIRKY  193 (196)
Q Consensus       127 -~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~------------d~~l~~kl~~~  193 (196)
                       .....||+.+=.....             ++  +..|+.|+..++.+++-.++...            .....+|++.|
T Consensus        96 ~~~~~iPvV~~~~~~~~-------------~~--~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf  160 (293)
T 2iks_A           96 WANDPFPIVALDRALDR-------------EH--FTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGF  160 (293)
T ss_dssp             TTTSSSCEEEEESCCCT-------------TT--CEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHH
T ss_pred             HHhCCCCEEEECCccCc-------------CC--CCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHH
Confidence             2346788876321110             12  34566677666655555554432            23345677777


Q ss_pred             Hh
Q 029271          194 VE  195 (196)
Q Consensus       194 r~  195 (196)
                      ++
T Consensus       161 ~~  162 (293)
T 2iks_A          161 RT  162 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}

Probab=93.08  E-value=1  Score=37.62  Aligned_cols=76  Identities=13%  Similarity=0.108  Sum_probs=52.0

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      +..|+++..+.++.   ...+.+.+.++++|.  ++-+...+. ++...++++.+..++++-+|....    +.  -...
T Consensus        64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~----~~--~~~~  134 (333)
T 3jvd_A           64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGY--QMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV----VG--SIAP  134 (333)
T ss_dssp             CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTC--EEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC----TT--CCC-
T ss_pred             CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCC--EEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch----HH--HHhh
Confidence            45799999887773   456677788888885  566666666 888888888888888876665443    11  1123


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      ..+||+.+
T Consensus       135 ~~iPvV~~  142 (333)
T 3jvd_A          135 EGIPMVQL  142 (333)
T ss_dssp             CCSCEEEE
T ss_pred             CCCCEEEE
Confidence            46777765

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}

Probab=93.07  E-value=1.8  Score=34.26  Aligned_cols=81  Identities=10%  Similarity=0.073  Sum_probs=51.8

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  126 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--  126 (196)
                      +.+|+++....+|   ....+.+.+.+++.|.  ++.+......++...++++.+..++++-+|.......  ...+.  
T Consensus         3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~~~~~~l   78 (275)
T 3d8u_A            3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGY--QLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS--QRTHQLL   78 (275)
T ss_dssp             -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSC--EECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC--HHHHHHH
T ss_pred             ceEEEEEeCCCccccHHHHHHHHHHHHHHCCC--EEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--HHHHHHH
Confidence            3579999876655   2455666777888886  4445556667777778888888888875554443222  12222  


Q ss_pred             hccCCcEEEe
Q 029271          127 ANSQILVIRV  136 (196)
Q Consensus       127 ~~t~~PVIgv  136 (196)
                      .....||+.+
T Consensus        79 ~~~~iPvV~~   88 (275)
T 3d8u_A           79 EASNTPVLEI   88 (275)
T ss_dssp             HHHTCCEEEE
T ss_pred             HhCCCCEEEE
Confidence            2357899876

>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...

Probab=92.91  E-value=2.8  Score=34.81  Aligned_cols=84  Identities=10%  Similarity=0.133  Sum_probs=54.8

Q ss_pred             CCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCC-CCchhHhhh
Q 029271           51 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAA  126 (196)
Q Consensus        51 ~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa~L~gvvA  126 (196)
                      .+..|++++...++.   ...+.+.+.+++.|.  ++-+...+..++...++++.+..++++-+|..... +..+-..+.
T Consensus        57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~  134 (340)
T 1qpz_A           57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGY--TLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLE  134 (340)
T ss_dssp             CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHH
T ss_pred             CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHH
Confidence            345899999776553   345667777888886  55566677778887788888888888766654433 222333333


Q ss_pred             hccCCcEEEe
Q 029271          127 ANSQILVIRV  136 (196)
Q Consensus       127 ~~t~~PVIgv  136 (196)
                      ....+||+.+
T Consensus       135 ~~~~iPvV~~  144 (340)
T 1qpz_A          135 EYRHIPMVVM  144 (340)
T ss_dssp             TTTTSCEEEE
T ss_pred             hhCCCCEEEE
Confidence            2246788765

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=92.83  E-value=0.91  Score=36.92  Aligned_cols=82  Identities=12%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             CCeEEEEEcC-----CCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhH
Q 029271           52 APIVGIIMES-----DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG  123 (196)
Q Consensus        52 ~~~V~IimGS-----~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~g  123 (196)
                      +..|++++..     .+|   ....+.+.+.+++.|.  ++-+...+..++...++++.+..++++-+|........  .
T Consensus         7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~--~   82 (295)
T 3hcw_A            7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGY--GTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND--P   82 (295)
T ss_dssp             SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTC--EEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC--H
T ss_pred             CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCC--EEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh--H
Confidence            4579999843     233   3556677788888886  56667777777777788888888888766654433221  2


Q ss_pred             hhh--hccCCcEEEec
Q 029271          124 VAA--ANSQILVIRVP  137 (196)
Q Consensus       124 vvA--~~t~~PVIgvP  137 (196)
                      .+.  ....+||+-+=
T Consensus        83 ~~~~l~~~~iPvV~i~   98 (295)
T 3hcw_A           83 IKQMLIDESMPFIVIG   98 (295)
T ss_dssp             HHHHHHHTTCCEEEES
T ss_pred             HHHHHHhCCCCEEEEC
Confidence            222  24578988763

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=92.79  E-value=3.7  Score=34.12  Aligned_cols=84  Identities=12%  Similarity=0.088  Sum_probs=59.2

Q ss_pred             CCeEEEEEcCCCC----HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhh--CCCeEEEEecCCCCchhHhh
Q 029271           52 APIVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE--RGIKIIIVGDGVEAHLSGVA  125 (196)
Q Consensus        52 ~~~V~IimGS~SD----~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~--~~~~V~IavAG~sa~L~gvv  125 (196)
                      .++|++++-+.++    ....+.+.+.++++|+.  +.+......++...+.++++-.  .+++.||... -.......+
T Consensus         3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~~~~   79 (350)
T 3h75_A            3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLD--LRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAPQIL   79 (350)
T ss_dssp             CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCE--EEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHHHHH
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCe--EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHHHHH
Confidence            3689999988877    35566777788889875  5555778888887788887777  4888666654 444555655


Q ss_pred             hh--ccCCcEEEecC
Q 029271          126 AA--NSQILVIRVPL  138 (196)
Q Consensus       126 A~--~t~~PVIgvP~  138 (196)
                      .-  ...+|||.+=.
T Consensus        80 ~~~~~~giPvV~~~~   94 (350)
T 3h75_A           80 RLSQGSGIKLFIVNS   94 (350)
T ss_dssp             HHHTTSCCEEEEEES
T ss_pred             HHHHhCCCcEEEEcC
Confidence            43  45789987643

>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}

Probab=92.59  E-value=2.6  Score=36.96  Aligned_cols=129  Identities=13%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             CCeEEEEEc-CCCC----HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec-CCCCchhHhh
Q 029271           52 APIVGIIME-SDLD----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSGVA  125 (196)
Q Consensus        52 ~~~V~IimG-S~SD----~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA-G~sa~L~gvv  125 (196)
                      +.+|++|+- +.+|    ..+.+-+.+..+++|-.+++.++......+...+.++++..+|+++||+.. +....+--+.
T Consensus        26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA  105 (356)
T 3s99_A           26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVA  105 (356)
T ss_dssp             CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHH
T ss_pred             CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH
Confidence            347998884 4567    345566667778899667777665555555667888889889999887763 2333333333


Q ss_pred             hhccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecC---ChhhHHHHHHHHH---------ccCCHHHHHHHHHH
Q 029271          126 AANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRN---NAKNAALYAVKVL---------GIADEDLLERIRKY  193 (196)
Q Consensus       126 A~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~---~~~nAA~~AaqIL---------a~~d~~l~~kl~~~  193 (196)
                      .-+...|++.|--..            . .+-  +.++..+   +++-|+.+|+.+.         +...+.+..++..|
T Consensus       106 ~~~Pdv~fv~id~~~------------~-~~N--v~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF  170 (356)
T 3s99_A          106 KKFPDVKFEHATGYK------------T-ADN--MSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSF  170 (356)
T ss_dssp             TTCTTSEEEEESCCC------------C-BTT--EEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHHHHH
T ss_pred             HHCCCCEEEEEeccc------------c-CCc--EEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHH
Confidence            333456677663211            0 111  4555445   3334444444432         23456777777777


Q ss_pred             Hh
Q 029271          194 VE  195 (196)
Q Consensus       194 r~  195 (196)
                      ++
T Consensus       171 ~~  172 (356)
T 3s99_A          171 ML  172 (356)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=92.58  E-value=3.5  Score=33.33  Aligned_cols=84  Identities=18%  Similarity=0.176  Sum_probs=59.0

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEccc--CCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  127 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~  127 (196)
                      .+|++++.+.++-   ...+.+.+.++++|+  ++.+....  ..+++..+.++++..++++-||........+...+.-
T Consensus         4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~   81 (297)
T 3rot_A            4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKV--DLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQR   81 (297)
T ss_dssp             CEEEEECSCCCSHHHHHHHHHHHHHHHHHTC--EEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHH
T ss_pred             EEEEEEecCCCCchHHHHHHHHHHHHHHhCc--EEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence            4789998877553   344566677788886  55566655  6888888899998888998777666656665665533


Q ss_pred             --ccCCcEEEecC
Q 029271          128 --NSQILVIRVPL  138 (196)
Q Consensus       128 --~t~~PVIgvP~  138 (196)
                        ....|||.+=.
T Consensus        82 ~~~~giPvV~~~~   94 (297)
T 3rot_A           82 ANKLNIPVIAVDT   94 (297)
T ss_dssp             HHHHTCCEEEESC
T ss_pred             HHHCCCCEEEEcC
Confidence              35789987643

>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}

Probab=92.56  E-value=0.85  Score=37.28  Aligned_cols=83  Identities=12%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             CeEEEEEcCCCC---HHHHHHHHHHHHHhCC---CeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271           53 PIVGIIMESDLD---LPVMNDAARTLSDFGV---PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  126 (196)
Q Consensus        53 ~~V~IimGS~SD---~~~~~~~~~~l~~~gi---~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA  126 (196)
                      ..|+|+. +.++   -+..+.+.+.|++.|.   ...+-++..+..+++..++++.+.+++++.||+.. .. +...+..
T Consensus         3 ~~Igvi~-~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~-~~-~~~~~~~   79 (295)
T 3lft_A            3 AKIGVLQ-FVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIA-TP-AAQGLAS   79 (295)
T ss_dssp             EEEEEEE-CSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEES-HH-HHHHHHH
T ss_pred             eEEEEEE-ccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC-cH-HHHHHHH
Confidence            4688883 3343   3456778888999998   87888899999999999999999988898888764 22 2222333


Q ss_pred             hccCCcEEEecC
Q 029271          127 ANSQILVIRVPL  138 (196)
Q Consensus       127 ~~t~~PVIgvP~  138 (196)
                      .....||+-|-.
T Consensus        80 ~~~~iPvV~~~~   91 (295)
T 3lft_A           80 ATKDLPVIMAAI   91 (295)
T ss_dssp             HCSSSCEEEESC
T ss_pred             cCCCCCEEEEec
Confidence            346789998754

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=92.44  E-value=3.4  Score=32.94  Aligned_cols=88  Identities=9%  Similarity=0.053  Sum_probs=60.2

Q ss_pred             CCCeEEEEEcCC-CC---HHHHHHHHHHHHHh-CCCeEEEEE-cccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh
Q 029271           51 DAPIVGIIMESD-LD---LPVMNDAARTLSDF-GVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  124 (196)
Q Consensus        51 ~~~~V~IimGS~-SD---~~~~~~~~~~l~~~-gi~~ev~V~-SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv  124 (196)
                      .+.+|++++.+. ++   ....+.+.+.+++. |....+... ..+..++...++++.+..++++-||............
T Consensus         7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~   86 (304)
T 3gbv_A            7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF   86 (304)
T ss_dssp             CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred             CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence            345799988776 44   34455677777888 887777665 3567788888888888888898777765544444444


Q ss_pred             hhh--ccCCcEEEecC
Q 029271          125 AAA--NSQILVIRVPL  138 (196)
Q Consensus       125 vA~--~t~~PVIgvP~  138 (196)
                      +.-  ...+|||.+-.
T Consensus        87 ~~~~~~~~iPvV~~~~  102 (304)
T 3gbv_A           87 TDALNELGIPYIYIDS  102 (304)
T ss_dssp             HHHHHHHTCCEEEESS
T ss_pred             HHHHHHCCCeEEEEeC
Confidence            432  34789987653

>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}

Probab=92.20  E-value=1.2  Score=35.47  Aligned_cols=79  Identities=9%  Similarity=0.068  Sum_probs=52.7

Q ss_pred             CCCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271           51 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  127 (196)
Q Consensus        51 ~~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~  127 (196)
                      .+.+|++++.+.++   ....+.+.+.++++|+  ++.+...+ .++...++++.+..++++-+| +.....  ...+..
T Consensus         4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~--~~~~~~   77 (280)
T 3gyb_A            4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGY--RLSVIDSL-TSQAGTDPITSALSMRPDGII-IAQDIP--DFTVPD   77 (280)
T ss_dssp             CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTC--EEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EESCC---------
T ss_pred             ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCC--EEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ecCCCC--hhhHhh
Confidence            34689999988776   5667777888888886  66677777 777777788888888898777 443322  223333


Q ss_pred             ccCCcEEEe
Q 029271          128 NSQILVIRV  136 (196)
Q Consensus       128 ~t~~PVIgv  136 (196)
                       ..+|||.+
T Consensus        78 -~~iPvV~~   85 (280)
T 3gyb_A           78 -SLPPFVIA   85 (280)
T ss_dssp             --CCCEEEE
T ss_pred             -cCCCEEEE
Confidence             67787765

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=92.20  E-value=0.96  Score=33.48  Aligned_cols=68  Identities=22%  Similarity=0.258  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-----hhHh---hhhccCCcEEEecCCC
Q 029271           69 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-----LSGV---AAANSQILVIRVPLLS  140 (196)
Q Consensus        69 ~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-----L~gv---vA~~t~~PVIgvP~~~  140 (196)
                      +++.+.++..|++++..+..  -  +-...+++.++..+++.||.++-+.++     |+++   +.-+++.||+-||...
T Consensus        86 ~~~~~~~~~~g~~~~~~v~~--G--~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~~~  161 (162)
T 1mjh_A           86 ENIKKELEDVGFKVKDIIVV--G--IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKN  161 (162)
T ss_dssp             HHHHHHHHHTTCEEEEEEEE--E--CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCCC
T ss_pred             HHHHHHHHHcCCceEEEEcC--C--CHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeCCC
Confidence            34445556679988877653  2  233445666666778876666543333     3333   3346899999999754

>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}

Probab=91.93  E-value=4.9  Score=33.58  Aligned_cols=81  Identities=10%  Similarity=0.130  Sum_probs=55.5

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  126 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--  126 (196)
                      +..|++++.+.++.   ...+.+.+.+++.|.  ++-+...+..++...++++.+..++++-+|........  ..+.  
T Consensus        70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~--~~~~~l  145 (355)
T 3e3m_A           70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGL--QLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE--QTIRLL  145 (355)
T ss_dssp             -CEEEEEESCSBCHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH--HHHHHH
T ss_pred             CCEEEEEeCCCCchHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH--HHHHHH
Confidence            45799999887764   355667777888886  56667788888888889988888888755554332221  2222  


Q ss_pred             hccCCcEEEe
Q 029271          127 ANSQILVIRV  136 (196)
Q Consensus       127 ~~t~~PVIgv  136 (196)
                      ....+||+-+
T Consensus       146 ~~~~iPvV~i  155 (355)
T 3e3m_A          146 QRASIPIVEI  155 (355)
T ss_dssp             HHCCSCEEEE
T ss_pred             HhCCCCEEEE
Confidence            2457899876

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=91.89  E-value=3.1  Score=33.32  Aligned_cols=80  Identities=9%  Similarity=0.162  Sum_probs=55.9

Q ss_pred             CCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeE-EEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271           51 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  126 (196)
Q Consensus        51 ~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~e-v~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA  126 (196)
                      .+..|++++.+.++-   ...+.+.+.++++|+  + +-+...+..++.-.++++.+..++++-+|...   ..+--  .
T Consensus         9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~--~   81 (277)
T 3hs3_A            9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGY--TALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FTIPP--N   81 (277)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCCCT--T
T ss_pred             CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCC--CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHHHH--H
Confidence            356899999887763   455677777888886  6 66778888888888899988888897666554   22211  1


Q ss_pred             hccCCcEEEec
Q 029271          127 ANSQILVIRVP  137 (196)
Q Consensus       127 ~~t~~PVIgvP  137 (196)
                      .....||+.+-
T Consensus        82 ~~~~iPvV~~~   92 (277)
T 3hs3_A           82 FHLNTPLVMYD   92 (277)
T ss_dssp             CCCSSCEEEES
T ss_pred             HhCCCCEEEEc
Confidence            23467877653

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=91.85  E-value=2.1  Score=34.44  Aligned_cols=83  Identities=13%  Similarity=0.124  Sum_probs=42.6

Q ss_pred             CCCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEE-cccCCchHHHHHHHHHhhCCCeEEEEecCC-CC-chhHh
Q 029271           51 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGV-EA-HLSGV  124 (196)
Q Consensus        51 ~~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~-SaHR~p~~~~~~~~~~e~~~~~V~IavAG~-sa-~L~gv  124 (196)
                      .+.+|++++.+.++   ....+.+.+.+++.|+  ++.+. .....++...++++.+..++++-+|..... +. .+.- 
T Consensus         7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~-   83 (290)
T 3clk_A            7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGY--NLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQL-   83 (290)
T ss_dssp             -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTC--EEEEEC----------CHHHHHHSSCCSEEEEESCC----CHHH-
T ss_pred             cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCHHHHHH-
Confidence            34589999865554   3455667777888885  55555 555566666667777777788766654433 22 2221 


Q ss_pred             hhhccCCcEEEec
Q 029271          125 AAANSQILVIRVP  137 (196)
Q Consensus       125 vA~~t~~PVIgvP  137 (196)
                      + .....||+.+-
T Consensus        84 l-~~~~iPvV~~~   95 (290)
T 3clk_A           84 L-QSSDVPYCFLS   95 (290)
T ss_dssp             H-HCC--CEEEES
T ss_pred             H-HhCCCCEEEEc
Confidence            2 23567888763

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=91.84  E-value=3.8  Score=32.17  Aligned_cols=84  Identities=13%  Similarity=0.128  Sum_probs=57.1

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCC-CeEEEEecCCCCchhHhhhh--
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIVGDGVEAHLSGVAAA--  127 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~-~~V~IavAG~sa~L~gvvA~--  127 (196)
                      +|+++..+.++   ....+.+.+.++++|+.+.+.....+..+++..+.++.+..++ ++-+|............+.-  
T Consensus         2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~   81 (276)
T 3ksm_A            2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYR   81 (276)
T ss_dssp             EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHH
T ss_pred             eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHH
Confidence            68888876665   3456677888889987544333225678888888888888888 88777765444444444433  


Q ss_pred             ccCCcEEEec
Q 029271          128 NSQILVIRVP  137 (196)
Q Consensus       128 ~t~~PVIgvP  137 (196)
                      ....||+.+-
T Consensus        82 ~~~ipvV~~~   91 (276)
T 3ksm_A           82 ARNIPVLVVD   91 (276)
T ss_dssp             HTTCCEEEES
T ss_pred             HCCCcEEEEe
Confidence            3578998874

>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}

Probab=91.76  E-value=4.5  Score=32.81  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=55.8

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  127 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--  127 (196)
                      .+|++++.+.++.   ...+.+.+.++++|+  ++.+......+++..++++.+..++++-||........+...+.-  
T Consensus         3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   80 (306)
T 2vk2_A            3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGI--TLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK   80 (306)
T ss_dssp             CEEEEEECCCCSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCC--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHH
Confidence            4799999876652   344567778889996  455566667778777888888777887666655444443344432  


Q ss_pred             ccCCcEEEec
Q 029271          128 NSQILVIRVP  137 (196)
Q Consensus       128 ~t~~PVIgvP  137 (196)
                      ....||+.+-
T Consensus        81 ~~~iPvV~~~   90 (306)
T 2vk2_A           81 DAEIPVFLLD   90 (306)
T ss_dssp             HTTCCEEEES
T ss_pred             HCCCCEEEec
Confidence            3568998764

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}

Probab=91.49  E-value=4.5  Score=33.55  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  126 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--  126 (196)
                      +..|++++.+.++   ....+.+.+.++++|.  ++-+...+..++...++++.+..++++-+|........  ..+.  
T Consensus        68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--~~~~~l  143 (344)
T 3kjx_A           68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTEL--QPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--AARAML  143 (344)
T ss_dssp             CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSS--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--HHHHHH
T ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--HHHHHH
Confidence            4579999987766   4556677777788876  55677788889988899998888888755554332221  2222  


Q ss_pred             hccCCcEEEe
Q 029271          127 ANSQILVIRV  136 (196)
Q Consensus       127 ~~t~~PVIgv  136 (196)
                      ....+||+-+
T Consensus       144 ~~~~iPvV~i  153 (344)
T 3kjx_A          144 DAAGIPVVEI  153 (344)
T ss_dssp             HHCSSCEEEE
T ss_pred             HhCCCCEEEE
Confidence            2457898876

>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...

Probab=91.23  E-value=2.4  Score=35.55  Aligned_cols=108  Identities=6%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             hccccCCCCCccccccccc-ccc--------ccCCCCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCC-
Q 029271           26 CQIVYVPAACPSTKSCLPR-FLL--------LAADAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQN-   92 (196)
Q Consensus        26 ~l~~vt~~~~~~vk~v~~~-~~~--------~~~~~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~-   92 (196)
                      +...|.++--+.|.+++++ .+.        ....+..|+++..+.++-   ...+.+.+.++++|+.  +-+...+.. 
T Consensus        26 ~~~~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~--~~~~~~~~~~  103 (349)
T 1jye_A           26 QASHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGAS--VVVSMVERSG  103 (349)
T ss_dssp             ------------------------------------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE--EEEEECCSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCE--EEEEeCCCCc
Confidence            3334545444555554444 221        122345799999776552   4556777788888864  445555543 


Q ss_pred             chHHHHHHHHHhhCCCeEEEEecCCCCchhHh--hhhccCCcEEEe
Q 029271           93 CKEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAANSQILVIRV  136 (196)
Q Consensus        93 p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--vA~~t~~PVIgv  136 (196)
                      ++...++++.+..++++-+|........ ...  ......+||+-+
T Consensus       104 ~~~~~~~l~~l~~~~vdGiIi~~~~~~~-~~~~~~~~~~~iPvV~i  148 (349)
T 1jye_A          104 VEACKTAVHNLLAQRVSGLIINYPLDDQ-DAIAVEAACTNVPALFL  148 (349)
T ss_dssp             HHHHHHHHHHHHTTTCSCEEEESCCCHH-HHHHHHHHTTTSCEEES
T ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCh-hHHHHHHhhCCCCEEEE
Confidence            5666677777777778755554332211 111  122356888865

>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*

Probab=91.08  E-value=5.6  Score=32.68  Aligned_cols=84  Identities=7%  Similarity=0.098  Sum_probs=56.3

Q ss_pred             CCeEEEEEcC-CCC---HHHHHHHHHHHHHhCCCeEEEEEccc--CCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh
Q 029271           52 APIVGIIMES-DLD---LPVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA  125 (196)
Q Consensus        52 ~~~V~IimGS-~SD---~~~~~~~~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv  125 (196)
                      +..|++++.+ .++   ....+.+.+.+++.|..+.+.++..+  ..++.-.++++.+..++++-||. .+........+
T Consensus        43 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~~~~  121 (342)
T 1jx6_A           43 PIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLDTTRHRKFV  121 (342)
T ss_dssp             CEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCSSSTTHHHH
T ss_pred             ceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCChHhHHHHH
Confidence            3479999876 333   25667788888999988777765555  56777777888887788876666 55544433433


Q ss_pred             hh--ccCCcEEEe
Q 029271          126 AA--NSQILVIRV  136 (196)
Q Consensus       126 A~--~t~~PVIgv  136 (196)
                      .-  ....||+.+
T Consensus       122 ~~~~~~~ip~V~~  134 (342)
T 1jx6_A          122 EHVLDSTNTKLIL  134 (342)
T ss_dssp             HHHHHHCSCEEEE
T ss_pred             HHHHHcCCCEEEE
Confidence            22  245787755

>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*

Probab=91.08  E-value=2.3  Score=35.16  Aligned_cols=83  Identities=12%  Similarity=0.071  Sum_probs=58.0

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEE-cccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  127 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~-SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-  127 (196)
                      .+|++++-..++-   ...+.+.+.++++|+  ++.+. .....++.-.+.++++..++++.||.....+..+..++.- 
T Consensus         4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a   81 (316)
T 1tjy_A            4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGI--DVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA   81 (316)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHHHHHHTC--EEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred             CEEEEEeCCCCChHHHHHHHHHHHHHHHhCC--EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence            5799998766552   233455666778885  55565 3677778878888888888998888776666666666532 


Q ss_pred             -ccCCcEEEec
Q 029271          128 -NSQILVIRVP  137 (196)
Q Consensus       128 -~t~~PVIgvP  137 (196)
                       ....|||.+-
T Consensus        82 ~~~gipvV~~d   92 (316)
T 1tjy_A           82 MQRGVKILTWD   92 (316)
T ss_dssp             HHTTCEEEEES
T ss_pred             HHCcCEEEEec
Confidence             3578999873

>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}

Probab=91.04  E-value=4.9  Score=32.19  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  126 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-  126 (196)
                      +.+|+++....++   ....+.+.+.++++|+  ++.+ ......+++..++++.+..++++.+|.....+..+...+. 
T Consensus         4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~   81 (303)
T 3d02_A            4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNL--NASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKK   81 (303)
T ss_dssp             CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTE--EEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred             ceEEEEEeccCCChHHHHHHHHHHHHHHHcCC--EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence            3578898866555   2345566777788884  5554 3366778888888888888888877766544333333332 


Q ss_pred             -hccCCcEEEe
Q 029271          127 -ANSQILVIRV  136 (196)
Q Consensus       127 -~~t~~PVIgv  136 (196)
                       .....|||.+
T Consensus        82 ~~~~~ipvV~~   92 (303)
T 3d02_A           82 ARDAGIVVLTN   92 (303)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCeEEEE
Confidence             2356899876

>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*

Probab=91.03  E-value=6.2  Score=33.03  Aligned_cols=82  Identities=10%  Similarity=0.091  Sum_probs=50.7

Q ss_pred             CCeEEEEEc--CCCCH----HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEec-CCCCchhHh
Q 029271           52 APIVGIIME--SDLDL----PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSGV  124 (196)
Q Consensus        52 ~~~V~IimG--S~SD~----~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavA-G~sa~L~gv  124 (196)
                      +.+|++|.-  +.+|.    .+.+.+.+.++++|+  ++.++.... .....+.++.+..++++.||... +....+--+
T Consensus         4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~--~~~~~~~~~-~~~~~~~l~~l~~~~~dgIi~~~~~~~~~~~~~   80 (318)
T 2fqx_A            4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNA--KCKYVTAST-DAEYVPSLSAFADENMGLVVACGSFLVEAVIET   80 (318)
T ss_dssp             CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTC--EEEEEECCS-GGGHHHHHHHHHHTTCSEEEEESTTTHHHHHHH
T ss_pred             CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCC--eEEEEeCCC-HHHHHHHHHHHHHcCCCEEEECChhHHHHHHHH
Confidence            357888874  77773    345566677788996  455544443 34446778888888898777664 333334333


Q ss_pred             hhhccCCcEEEe
Q 029271          125 AAANSQILVIRV  136 (196)
Q Consensus       125 vA~~t~~PVIgv  136 (196)
                      .......|++-|
T Consensus        81 a~~~p~~p~v~i   92 (318)
T 2fqx_A           81 SARFPKQKFLVI   92 (318)
T ss_dssp             HHHCTTSCEEEE
T ss_pred             HHHCCCCEEEEE
Confidence            322346788876

>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}

Probab=90.90  E-value=5.9  Score=32.56  Aligned_cols=83  Identities=17%  Similarity=0.219  Sum_probs=53.6

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHh-CCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  127 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~  127 (196)
                      +.+|++++.. ++-   ...+.+.+.+++. |+  ++.+...+..++...++++.+..++++-+|........+...+.-
T Consensus         6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~--~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~   82 (325)
T 2x7x_A            6 HFRIGVAQCS-DDSWRHKMNDEILREAMFYNGV--SVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE   82 (325)
T ss_dssp             CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred             CeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence            4589999977 542   2344555666666 65  566667777788888888888888898777654433333333322


Q ss_pred             --ccCCcEEEec
Q 029271          128 --NSQILVIRVP  137 (196)
Q Consensus       128 --~t~~PVIgvP  137 (196)
                        ....|||.+-
T Consensus        83 ~~~~~iPvV~~~   94 (325)
T 2x7x_A           83 AYQKGIPVILVD   94 (325)
T ss_dssp             HHHTTCCEEEES
T ss_pred             HHHCCCeEEEeC
Confidence              3568998763

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=90.77  E-value=2.1  Score=32.35  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh--------hhccCCcEEEe
Q 029271           66 PVMNDAARTLSDFGVP-YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--------AANSQILVIRV  136 (196)
Q Consensus        66 ~~~~~~~~~l~~~gi~-~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv--------A~~t~~PVIgv  136 (196)
                      ...+++.+.++..|++ ++..+..  -  +-...+++.+++.+++.||.++-..+.+...+        .-+++.||+-|
T Consensus        81 ~~l~~~~~~~~~~gv~~v~~~v~~--G--~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV  156 (163)
T 1tq8_A           81 EILHDAKERAHNAGAKNVEERPIV--G--APVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV  156 (163)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEEEEC--S--SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEec--C--CHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEE
Confidence            3455666777778998 8877763  2  23455666667778887777765555555433        34578999999


Q ss_pred             cCCC
Q 029271          137 PLLS  140 (196)
Q Consensus       137 P~~~  140 (196)
                      |...
T Consensus       157 ~~~~  160 (163)
T 1tq8_A          157 HTTE  160 (163)
T ss_dssp             CCC-
T ss_pred             eCCC
Confidence            8754

>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*

Probab=90.46  E-value=5.6  Score=31.60  Aligned_cols=82  Identities=15%  Similarity=0.279  Sum_probs=54.5

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--h
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A  127 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~  127 (196)
                      ..|++++.+.++.   ...+.+.+.+++.|.  ++-+......+++-.++++.+..++++-+|........+...+.  .
T Consensus         2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   79 (271)
T 2dri_A            2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN   79 (271)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHHHHcCc--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence            4688888776653   455667778888885  56666666777777778888877888766655444444333332  2


Q ss_pred             ccCCcEEEe
Q 029271          128 NSQILVIRV  136 (196)
Q Consensus       128 ~t~~PVIgv  136 (196)
                      ....||+-+
T Consensus        80 ~~~iPvV~i   88 (271)
T 2dri_A           80 QANIPVITL   88 (271)
T ss_dssp             HTTCCEEEE
T ss_pred             HCCCcEEEe
Confidence            356898876

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=90.44  E-value=6  Score=31.86  Aligned_cols=82  Identities=13%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--  126 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--  126 (196)
                      +..|++++-..++-   ...+.+.+.+++.|.  ++.+......++...++++.+..++++-+|.......  ...+.  
T Consensus        16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~l   91 (289)
T 2fep_A           16 TTTVGVIIPDISSIFYSELARGIEDIATMYKY--NIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT--DEHVAEF   91 (289)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC--HHHHHHH
T ss_pred             CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC--HHHHHHH
Confidence            45899999766652   455667777888886  4555666677777778888888888876665543221  22222  


Q ss_pred             hccCCcEEEec
Q 029271          127 ANSQILVIRVP  137 (196)
Q Consensus       127 ~~t~~PVIgvP  137 (196)
                      ....+||+.+-
T Consensus        92 ~~~~iPvV~~~  102 (289)
T 2fep_A           92 KRSPVPIVLAA  102 (289)
T ss_dssp             HHSSSCEEEES
T ss_pred             HhcCCCEEEEc
Confidence            23568988763

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=90.39  E-value=5.6  Score=31.51  Aligned_cols=82  Identities=9%  Similarity=0.076  Sum_probs=53.7

Q ss_pred             CCeEEEEEcC--CCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271           52 APIVGIIMES--DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  126 (196)
Q Consensus        52 ~~~V~IimGS--~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA  126 (196)
                      +.+|++++..  .++   ....+.+.+.+++.|+  ++.+......++...++++.+..++++-+|........  ..+.
T Consensus        19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~--~~~~   94 (296)
T 3brq_A           19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGR--QLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV--DEID   94 (296)
T ss_dssp             CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTC--EEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH--HHHH
T ss_pred             CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh--HHHH
Confidence            4589999865  443   3456677778888886  55566777778877888888877888766665443221  2221


Q ss_pred             --hc-cCCcEEEec
Q 029271          127 --AN-SQILVIRVP  137 (196)
Q Consensus       127 --~~-t~~PVIgvP  137 (196)
                        .. ...|||.+-
T Consensus        95 ~l~~~~~iPvV~~~  108 (296)
T 3brq_A           95 DIIDAHSQPIMVLN  108 (296)
T ss_dssp             HHHHTCSSCEEEES
T ss_pred             HHHhcCCCCEEEEc
Confidence              22 578988763

>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}

Probab=90.37  E-value=4.6  Score=32.26  Aligned_cols=79  Identities=9%  Similarity=0.131  Sum_probs=51.2

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC--chhHhhh
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA--HLSGVAA  126 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa--~L~gvvA  126 (196)
                      +.+|++++.. ++-   ...+.+.+.+++.|+  ++.+......++...++++.+..++++-+|.......  .+.-+  
T Consensus         8 ~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l--   82 (288)
T 2qu7_A            8 SNIIAFIVPD-QNPFFTEVLTEISHECQKHHL--HVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW--   82 (288)
T ss_dssp             EEEEEEEESS-CCHHHHHHHHHHHHHHGGGTC--EEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG--
T ss_pred             CCEEEEEECC-CCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh--
Confidence            3479999977 542   344566667778886  4555666667777778888887888876666544322  22222  


Q ss_pred             hccCCcEEEec
Q 029271          127 ANSQILVIRVP  137 (196)
Q Consensus       127 ~~t~~PVIgvP  137 (196)
                        ...||+.+-
T Consensus        83 --~~iPvV~~~   91 (288)
T 2qu7_A           83 --LKIPIMTLD   91 (288)
T ss_dssp             --GGSCEEEES
T ss_pred             --cCCCEEEEe
Confidence              567888763

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=89.60  E-value=6.6  Score=31.13  Aligned_cols=83  Identities=14%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCC---chhHhhh
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA---HLSGVAA  126 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa---~L~gvvA  126 (196)
                      ..|+++..+.+|.   ...+.+.+.+++.|+  ++.+...+..+++..++++.+..++++-+|.....+.   .....+.
T Consensus        16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   93 (298)
T 3tb6_A           16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGY--SMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYL   93 (298)
T ss_dssp             CEEEEEESCSSSTTHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHH
Confidence            5899999877763   566778888888886  5666777888888888999888888986666544331   2223332


Q ss_pred             --hccCCcEEEec
Q 029271          127 --ANSQILVIRVP  137 (196)
Q Consensus       127 --~~t~~PVIgvP  137 (196)
                        ....+|||.+=
T Consensus        94 ~~~~~~iPvV~~~  106 (298)
T 3tb6_A           94 NLEKNGIPFAMIN  106 (298)
T ss_dssp             HHHHTTCCEEEES
T ss_pred             HHHhcCCCEEEEe
Confidence              23578988763

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*

Probab=89.50  E-value=6.2  Score=32.40  Aligned_cols=76  Identities=13%  Similarity=0.167  Sum_probs=43.2

Q ss_pred             CeEEEEecCCCCchhHhhhhccCCcEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhh--HHHHHHHHHccCCH
Q 029271          108 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKN--AALYAVKVLGIADE  184 (196)
Q Consensus       108 ~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~n--AA~~AaqILa~~d~  184 (196)
                      ++++|.-+|   ++.-+=|...-.|||..|..+....-.. .--.++  .|.  +.+  -.+.+  +.-+|..|..+ |+
T Consensus       255 ad~~v~~sg---~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~--~g~--g~~--~~~~d~~~~~la~~i~~l-~~  324 (364)
T 1f0k_A          255 ADVVVCRSG---ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEK--AGA--AKI--IEQPQLSVDAVANTLAGW-SR  324 (364)
T ss_dssp             CSEEEECCC---HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHH--TTS--EEE--CCGGGCCHHHHHHHHHTC-CH
T ss_pred             CCEEEECCc---hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHh--CCc--EEE--eccccCCHHHHHHHHHhc-CH
Confidence            467777665   3333335567899999877542110011 111222  343  222  24444  77788888888 99


Q ss_pred             HHHHHHHHH
Q 029271          185 DLLERIRKY  193 (196)
Q Consensus       185 ~l~~kl~~~  193 (196)
                      +.++++...
T Consensus       325 ~~~~~~~~~  333 (364)
T 1f0k_A          325 ETLLTMAER  333 (364)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887543

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A

Probab=89.26  E-value=7.3  Score=31.18  Aligned_cols=82  Identities=17%  Similarity=0.148  Sum_probs=58.0

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh--hh
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AA  127 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv--A~  127 (196)
                      .+|+++..+.++-   ...+.+.+.++++|+  ++-+.+. ..+++-.+.++++..++++-||............+  +.
T Consensus         3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~   79 (306)
T 8abp_A            3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGF--EVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR   79 (306)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHHHTE--EEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHHcCC--EEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHH
Confidence            4789998877663   455667778888885  5556666 48888888889888888987777665555555544  23


Q ss_pred             ccCCcEEEec
Q 029271          128 NSQILVIRVP  137 (196)
Q Consensus       128 ~t~~PVIgvP  137 (196)
                      ....||+.+=
T Consensus        80 ~~~iPvV~~~   89 (306)
T 8abp_A           80 GYDMKVIAVD   89 (306)
T ss_dssp             HTTCEEEEES
T ss_pred             HCCCcEEEeC
Confidence            4578998764

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=89.22  E-value=6.6  Score=31.91  Aligned_cols=73  Identities=10%  Similarity=0.051  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh--------hhccCCcEEE
Q 029271           64 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--------AANSQILVIR  135 (196)
Q Consensus        64 D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv--------A~~t~~PVIg  135 (196)
                      .....+++.+.|++.|++++..+..-    +-...+.+.++..+++.+|.++-..+.+...+        ..+++.||+-
T Consensus       212 ~~~~l~~~~~~l~~~~~~~~~~~~~g----~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLv  287 (294)
T 3loq_A          212 KTADLRVMEEVIGAEGIEVHVHIESG----TPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFV  287 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEECS----CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEEecC----CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEE
Confidence            67788899999999999988777532    34455666666778888888877666665543        3467899999


Q ss_pred             ecCCC
Q 029271          136 VPLLS  140 (196)
Q Consensus       136 vP~~~  140 (196)
                      ||...
T Consensus       288 v~~~~  292 (294)
T 3loq_A          288 CKRGD  292 (294)
T ss_dssp             ECSCT
T ss_pred             ECCCC
Confidence            99764

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=88.95  E-value=0.96  Score=30.09  Aligned_cols=46  Identities=11%  Similarity=0.049  Sum_probs=32.1

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHH
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL  101 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~  101 (196)
                      +|.+.+.+  .=+.|++++..|+++|++|+..-......+....++.+
T Consensus         5 ~v~ly~~~--~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~   50 (89)
T 3msz_A            5 KVKIYTRN--GCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMN   50 (89)
T ss_dssp             CEEEEECT--TCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEEcC--CChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHH
Confidence            45555433  45999999999999999998876666555545445443

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=88.95  E-value=1.8  Score=30.94  Aligned_cols=64  Identities=16%  Similarity=0.178  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh-------hhccCCcEEEec
Q 029271           68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-------AANSQILVIRVP  137 (196)
Q Consensus        68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv-------A~~t~~PVIgvP  137 (196)
                      .+++.+.+++.|++++..+..-  .  -...+++.++  +++.+|.++-..+.+...+       .-+++.||+-||
T Consensus        68 l~~~~~~~~~~g~~~~~~v~~g--~--~~~~I~~~a~--~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~  138 (138)
T 3idf_A           68 TQKFSTFFTEKGINPFVVIKEG--E--PVEMVLEEAK--DYNLLIIGSSENSFLNKIFASHQDDFIQKAPIPVLIVK  138 (138)
T ss_dssp             HHHHHHHHHTTTCCCEEEEEES--C--HHHHHHHHHT--TCSEEEEECCTTSTTSSCCCCTTCHHHHHCSSCEEEEC
T ss_pred             HHHHHHHHHHCCCCeEEEEecC--C--hHHHHHHHHh--cCCEEEEeCCCcchHHHHhCcHHHHHHhcCCCCEEEeC
Confidence            3445555666799988777643  2  2344555444  7887777765555554443       234578888776

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A

Probab=88.83  E-value=1.9  Score=37.05  Aligned_cols=83  Identities=17%  Similarity=0.115  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCC----HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc-
Q 029271           54 IVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-  128 (196)
Q Consensus        54 ~V~IimGS~SD----~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~-  128 (196)
                      ++.||.-..|-    ....+++...|++.|+.+++..+.   .+....++++++..++++++|+ +|+.+.+--++.+. 
T Consensus        26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~---~~~~a~~~~~~~~~~~~d~vvv-~GGDGTv~~v~~~l~  101 (337)
T 2qv7_A           26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATE---KIGDATLEAERAMHENYDVLIA-AGGDGTLNEVVNGIA  101 (337)
T ss_dssp             EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC---STTHHHHHHHHHTTTTCSEEEE-EECHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEec---CcchHHHHHHHHhhcCCCEEEE-EcCchHHHHHHHHHH
Confidence            57777744442    367789999999999887776542   3345667777776667776665 57788888777776 


Q ss_pred             ---cCCcEEEecCCC
Q 029271          129 ---SQILVIRVPLLS  140 (196)
Q Consensus       129 ---t~~PVIgvP~~~  140 (196)
                         +..|+..+|.-+
T Consensus       102 ~~~~~~pl~iIP~GT  116 (337)
T 2qv7_A          102 EKPNRPKLGVIPMGT  116 (337)
T ss_dssp             TCSSCCEEEEEECSS
T ss_pred             hCCCCCcEEEecCCc
Confidence               678999999754

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=88.73  E-value=4.6  Score=32.34  Aligned_cols=84  Identities=10%  Similarity=0.017  Sum_probs=57.2

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  127 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--  127 (196)
                      .+|++++.+.++-   ...+.+.+.++++|. +++.+...+..++...++++.+..++++.||............+.-  
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~   81 (309)
T 2fvy_A            3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR   81 (309)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHTCTT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHH
T ss_pred             cEEEEEeccCCcHHHHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHH
Confidence            4789998776652   345566777778885 3666777777888888888888888898777655444444444332  


Q ss_pred             ccCCcEEEec
Q 029271          128 NSQILVIRVP  137 (196)
Q Consensus       128 ~t~~PVIgvP  137 (196)
                      ....|||.+-
T Consensus        82 ~~~iPvV~~~   91 (309)
T 2fvy_A           82 GQNVPVVFFN   91 (309)
T ss_dssp             TTTCCEEEES
T ss_pred             HCCCcEEEec
Confidence            3568998764

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=88.55  E-value=3.3  Score=30.78  Aligned_cols=69  Identities=13%  Similarity=0.059  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhCCCeEE--EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh-----Hh---hhhccCCcEEEec
Q 029271           68 MNDAARTLSDFGVPYEI--KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-----GV---AAANSQILVIRVP  137 (196)
Q Consensus        68 ~~~~~~~l~~~gi~~ev--~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~-----gv---vA~~t~~PVIgvP  137 (196)
                      .+++.+.++..|++++.  .+..-    +-...+++.+++.+++.||.++-..+.+.     ++   +.-++..||+-||
T Consensus        80 l~~~~~~~~~~g~~~~~~~~~~~g----~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~  155 (170)
T 2dum_A           80 LQEKAEEVKRAFRAKNVRTIIRFG----IPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK  155 (170)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEEEE----CHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred             HHHHHHHHHHcCCceeeeeEEecC----ChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence            34455555667999887  66532    33445666666677887776665444433     22   3356889999999


Q ss_pred             CCC
Q 029271          138 LLS  140 (196)
Q Consensus       138 ~~~  140 (196)
                      ...
T Consensus       156 ~~~  158 (170)
T 2dum_A          156 EVD  158 (170)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            754

>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*

Probab=88.40  E-value=7.9  Score=31.79  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             CCCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh-
Q 029271           51 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-  126 (196)
Q Consensus        51 ~~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA-  126 (196)
                      .+..|+++....++   ....+.+.+.+++.|..  +-+...+..++...++++.+..++++-+|........  ..+. 
T Consensus        59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~~~  134 (332)
T 2hsg_A           59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYN--IILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE--EHVEE  134 (332)
T ss_dssp             -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCE--EEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH--HHHHH
T ss_pred             CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH--HHHHH
Confidence            34589999876555   35566777888888864  5555556666777778888877788755554433221  2222 


Q ss_pred             -hccCCcEEEec
Q 029271          127 -ANSQILVIRVP  137 (196)
Q Consensus       127 -~~t~~PVIgvP  137 (196)
                       .....||+.+-
T Consensus       135 l~~~~iPvV~~~  146 (332)
T 2hsg_A          135 LKKSPVPVVLAA  146 (332)
T ss_dssp             HTTSSSCEEEES
T ss_pred             HHhCCCCEEEEc
Confidence             23568888763

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=88.33  E-value=9.1  Score=31.07  Aligned_cols=85  Identities=20%  Similarity=0.230  Sum_probs=59.7

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh-
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-  127 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~-  127 (196)
                      +.+|++++-+.++-   ...+.+.+.++++|+  ++-+...+..+++-.++++.+..++++.||...-........+.- 
T Consensus         3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~   80 (330)
T 3uug_A            3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGY--KTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA   80 (330)
T ss_dssp             CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred             CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCC--EEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence            46899999876653   345567777888886  555666888888888888888888898777665544454444432 


Q ss_pred             -ccCCcEEEecC
Q 029271          128 -NSQILVIRVPL  138 (196)
Q Consensus       128 -~t~~PVIgvP~  138 (196)
                       ....|||.+=.
T Consensus        81 ~~~giPvV~~~~   92 (330)
T 3uug_A           81 GEQGIKVIAYDR   92 (330)
T ss_dssp             HHTTCEEEEESS
T ss_pred             HHCCCCEEEECC
Confidence             35689987643

>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}

Probab=87.99  E-value=2.3  Score=35.45  Aligned_cols=86  Identities=12%  Similarity=0.053  Sum_probs=61.5

Q ss_pred             CCCeEEEEE-cCCCCHHHH-HHHHHHHHHhCC----CeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh
Q 029271           51 DAPIVGIIM-ESDLDLPVM-NDAARTLSDFGV----PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV  124 (196)
Q Consensus        51 ~~~~V~Iim-GS~SD~~~~-~~~~~~l~~~gi----~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv  124 (196)
                      +..+|+|+- -..--++-+ +...+.|++.|.    ++++.+..|...+....++++++.+++.++||+++--  +.-.+
T Consensus         7 ~~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~--aa~a~   84 (302)
T 3lkv_A            7 KTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP--TAQAL   84 (302)
T ss_dssp             CCEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEESHH--HHHHH
T ss_pred             CCceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCH--HHHHH
Confidence            345888873 122123333 346677888775    5888999999999999999999999999999987533  23345


Q ss_pred             hhhccCCcEEEecC
Q 029271          125 AAANSQILVIRVPL  138 (196)
Q Consensus       125 vA~~t~~PVIgvP~  138 (196)
                      .......||+-|-+
T Consensus        85 ~~~~~~iPVVf~~v   98 (302)
T 3lkv_A           85 VSATKTIPIVFTAV   98 (302)
T ss_dssp             HHHCSSSCEEEEEE
T ss_pred             HhhcCCCCeEEEec
Confidence            55667899997754

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=87.48  E-value=3.3  Score=30.98  Aligned_cols=67  Identities=16%  Similarity=0.070  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh-----Hh---hhhccCCcEEEe
Q 029271           68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-----GV---AAANSQILVIRV  136 (196)
Q Consensus        68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~-----gv---vA~~t~~PVIgv  136 (196)
                      .+++.+.+++.|+++++++.-.+..|  ...+++.++..+++.+|.++-..+.+.     ++   +.-++..||+-|
T Consensus        80 l~~~~~~~~~~g~~~~~~~~v~~G~~--~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvV  154 (155)
T 3dlo_A           80 LSWAVSIIRKEGAEGEEHLLVRGKEP--PDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICI  154 (155)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEESSSCH--HHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred             HHHHHHHHHhcCCCceEEEEecCCCH--HHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEe
Confidence            44556666778999887654444444  355666667778887777765444333     22   334678888755

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=87.05  E-value=1.9  Score=31.46  Aligned_cols=74  Identities=7%  Similarity=-0.058  Sum_probs=48.3

Q ss_pred             CeEEEEEcCC---CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271           53 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  129 (196)
Q Consensus        53 ~~V~IimGS~---SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t  129 (196)
                      +.|.|.|-++   +.=|+|.++++.|++.|++|+..=...  .++...++ +++                      +|..
T Consensus        16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~--d~~~~~~l-~~~----------------------~g~~   70 (111)
T 3zyw_A           16 APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS--DEEVRQGL-KAY----------------------SSWP   70 (111)
T ss_dssp             SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG--CHHHHHHH-HHH----------------------HTCC
T ss_pred             CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC--CHHHHHHH-HHH----------------------HCCC
Confidence            4688888644   567999999999999999988653333  23332222 221                      2456


Q ss_pred             CCcEEEecCCCCCCChhh-hhhhhc
Q 029271          130 QILVIRVPLLSEDWSEDD-VINSIR  153 (196)
Q Consensus       130 ~~PVIgvP~~~~~~~G~D-LlS~lq  153 (196)
                      +.|+|-+  .+...+|.| +..+.+
T Consensus        71 tvP~ifi--~g~~iGG~d~l~~l~~   93 (111)
T 3zyw_A           71 TYPQLYV--SGELIGGLDIIKELEA   93 (111)
T ss_dssp             SSCEEEE--TTEEEECHHHHHHHHH
T ss_pred             CCCEEEE--CCEEEecHHHHHHHHH
Confidence            7888753  344467888 777665

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=86.93  E-value=1.7  Score=31.37  Aligned_cols=66  Identities=12%  Similarity=0.098  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhCC-CeEEEEEcccCCchHHHHHHH-HHhhCCCeEEEEecCCCCchhHh--------hhhccCCcEEEec
Q 029271           68 MNDAARTLSDFGV-PYEIKILPPHQNCKEALSYAL-SAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVP  137 (196)
Q Consensus        68 ~~~~~~~l~~~gi-~~ev~V~SaHR~p~~~~~~~~-~~e~~~~~V~IavAG~sa~L~gv--------vA~~t~~PVIgvP  137 (196)
                      .+++.+.++..|+ +++..+..-    +-...+++ .++..+++.+|.++-..+.+...        +.-+++.||+-||
T Consensus        71 l~~~~~~~~~~g~~~~~~~~~~g----~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~  146 (146)
T 3s3t_A           71 MRQRQQFVATTSAPNLKTEISYG----IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR  146 (146)
T ss_dssp             HHHHHHHHTTSSCCCCEEEEEEE----CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred             HHHHHHHHHhcCCcceEEEEecC----ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence            3444555556788 888776532    33455666 56667888777776544444332        2345688888776

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=86.83  E-value=3.4  Score=31.00  Aligned_cols=69  Identities=13%  Similarity=0.099  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh--------hhhccCCcEEEecCC
Q 029271           68 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLL  139 (196)
Q Consensus        68 ~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--------vA~~t~~PVIgvP~~  139 (196)
                      .+++.+.++..|++++..+..  -  +-...+++.++..+++.+|.++-..+++..+        +.-++..||+-||..
T Consensus        89 l~~~~~~~~~~g~~~~~~v~~--G--~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~~~  164 (175)
T 2gm3_A           89 LEFFVNKCHEIGVGCEAWIKT--G--DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRN  164 (175)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEE--S--CHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEECC
T ss_pred             HHHHHHHHHHCCCceEEEEec--C--CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEcCC
Confidence            334444566689988877653  2  2344566666666787666665444443332        334678999999875


Q ss_pred             C
Q 029271          140 S  140 (196)
Q Consensus       140 ~  140 (196)
                      .
T Consensus       165 ~  165 (175)
T 2gm3_A          165 A  165 (175)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=86.11  E-value=2.3  Score=30.65  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=47.2

Q ss_pred             CeEEEEEcCC---CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271           53 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  129 (196)
Q Consensus        53 ~~V~IimGS~---SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t  129 (196)
                      ++|.|.+-++   ..=|+|.++++.|+++|++|+..=..  ..++...++ ++                      .++..
T Consensus        18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~--~~~~~~~~l-~~----------------------~~g~~   72 (109)
T 3ipz_A           18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNIL--ENEMLRQGL-KE----------------------YSNWP   72 (109)
T ss_dssp             SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG--GCHHHHHHH-HH----------------------HHTCS
T ss_pred             CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECC--CCHHHHHHH-HH----------------------HHCCC
Confidence            4688888764   36789999999999999998865332  223322222 21                      12456


Q ss_pred             CCcEEEecCCCCCCChhh-hhhhhc
Q 029271          130 QILVIRVPLLSEDWSEDD-VINSIR  153 (196)
Q Consensus       130 ~~PVIgvP~~~~~~~G~D-LlS~lq  153 (196)
                      +.|+|-+  .+...+|.| +..+.+
T Consensus        73 tvP~ifi--~g~~iGG~d~l~~l~~   95 (109)
T 3ipz_A           73 TFPQLYI--GGEFFGGCDITLEAFK   95 (109)
T ss_dssp             SSCEEEE--TTEEEECHHHHHHHHH
T ss_pred             CCCeEEE--CCEEEeCHHHHHHHHH
Confidence            7787743  333457777 766654

>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}

Probab=85.78  E-value=4.7  Score=32.35  Aligned_cols=79  Identities=5%  Similarity=-0.157  Sum_probs=51.3

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEccc---------CCchHHHHHHHHHhhC--CC-eEEEEecCCCCc
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---------QNCKEALSYALSAKER--GI-KIIIVGDGVEAH  120 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaH---------R~p~~~~~~~~~~e~~--~~-~V~IavAG~sa~  120 (196)
                      .+|+|++  +.-...-+...+.|++.|+.+.. ..+.-         ..++.+.++++++...  |+ -||+.++++.-.
T Consensus       109 ~rvgvlt--~~~~~~~~~~~~~l~~~G~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaIvLgCT~l~~~  185 (223)
T 2dgd_A          109 RKLWIGT--PYIKERTLEEVEWWRNKGFEIVG-YDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTALSTY  185 (223)
T ss_dssp             CEEEEEE--SSCHHHHHHHHHHHHTTTCEEEE-EEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEEEECCTTSCCT
T ss_pred             CeEEEEe--CCchHHHHHHHHHHHhCCcEEec-ccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEEEEeCCcccHH
Confidence            5899996  33445455666788888986432 22211         2456677888877766  78 478888888763


Q ss_pred             -hhHhhhhccCCcEE
Q 029271          121 -LSGVAAANSQILVI  134 (196)
Q Consensus       121 -L~gvvA~~t~~PVI  134 (196)
                       +-.-+...+.+|||
T Consensus       186 ~~~~~l~~~~g~PVi  200 (223)
T 2dgd_A          186 EAVQYLHEDLDMPVV  200 (223)
T ss_dssp             THHHHHHHHHTSCEE
T ss_pred             HHHHHHHHHhCCCEE
Confidence             44545455668887

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=85.70  E-value=12  Score=29.82  Aligned_cols=82  Identities=12%  Similarity=0.255  Sum_probs=53.6

Q ss_pred             CeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271           53 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  127 (196)
Q Consensus        53 ~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--  127 (196)
                      ..|+++....++   ....+.+.+.+++.|+  ++-+......+++-.++++.+..++++-||........+...+..  
T Consensus         2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   79 (283)
T 2ioy_A            2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGY--KIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEAN   79 (283)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred             eEEEEEecCCCCHHHHHHHHHHHHHHHhcCc--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHH
Confidence            368888877666   2455667778888886  455666666777777778887778887666554444443333322  


Q ss_pred             ccCCcEEEe
Q 029271          128 NSQILVIRV  136 (196)
Q Consensus       128 ~t~~PVIgv  136 (196)
                      ....||+-+
T Consensus        80 ~~~iPvV~~   88 (283)
T 2ioy_A           80 SKNIPVITI   88 (283)
T ss_dssp             HTTCCEEEE
T ss_pred             HCCCeEEEe
Confidence            356898876

>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1

Probab=85.24  E-value=12  Score=29.24  Aligned_cols=81  Identities=12%  Similarity=0.039  Sum_probs=52.4

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      +..|++++.+.+|-   ...+.+.+.+++.|.  ++.+...+..++...++++.+..++++-+|.......... .+. .
T Consensus         2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-~l~-~   77 (255)
T 1byk_A            2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGY--DPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEE-MLA-H   77 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTT-TSG-G
T ss_pred             CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCC--EEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccHH-HHH-h
Confidence            35799999776663   455677778888886  5556666777787788888888788875555443222222 222 2


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      ...||+.+
T Consensus        78 ~~~pvV~~   85 (255)
T 1byk_A           78 WQSSLVLL   85 (255)
T ss_dssp             GSSSEEEE
T ss_pred             cCCCEEEE
Confidence            34687765

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=85.01  E-value=3.2  Score=30.43  Aligned_cols=67  Identities=16%  Similarity=0.077  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhCC-CeEEEEEcccCCchHHHHHHHH-HhhCCCeEEEEecCCCCch----hH---hhhhccCCcEEEec
Q 029271           68 MNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALS-AKERGIKIIIVGDGVEAHL----SG---VAAANSQILVIRVP  137 (196)
Q Consensus        68 ~~~~~~~l~~~gi-~~ev~V~SaHR~p~~~~~~~~~-~e~~~~~V~IavAG~sa~L----~g---vvA~~t~~PVIgvP  137 (196)
                      .+++.+.++..|+ +++..+....   +-...+++. +++.+++.+|.++-..+++    ++   -+.-+++.||+-||
T Consensus        81 l~~~~~~~~~~g~~~~~~~v~~~g---~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV~  156 (156)
T 3fg9_A           81 VAEYVQLAEQRGVNQVEPLVYEGG---DVDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVVR  156 (156)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEEECS---CHHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEEC
T ss_pred             HHHHHHHHHHcCCCceEEEEEeCC---CHHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEeC
Confidence            3445555667799 4887776422   233445555 5566788777766543333    22   23456788888775

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=83.50  E-value=4.6  Score=33.86  Aligned_cols=26  Identities=12%  Similarity=0.003  Sum_probs=13.9

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFG   79 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~g   79 (196)
                      +.||++|||+.+  -+...+++.|.+-|
T Consensus         6 ~gKvalVTGas~--GIG~aiA~~la~~G   31 (254)
T 4fn4_A            6 KNKVVIVTGAGS--GIGRAIAKKFALND   31 (254)
T ss_dssp             TTCEEEEETTTS--HHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCC--HHHHHHHHHHHHcC
Confidence            356777777766  23344444444444

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=83.29  E-value=2.9  Score=28.35  Aligned_cols=25  Identities=20%  Similarity=0.188  Sum_probs=21.1

Q ss_pred             CHHHHHHHHHHHHHhCCCeEEEEEc
Q 029271           64 DLPVMNDAARTLSDFGVPYEIKILP   88 (196)
Q Consensus        64 D~~~~~~~~~~l~~~gi~~ev~V~S   88 (196)
                      -=++|.+++..|++.|++|+..=..
T Consensus        13 ~Cp~C~~ak~~L~~~gi~y~~idI~   37 (87)
T 1aba_A           13 KCGPCDNAKRLLTVKKQPFEFINIM   37 (87)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCccHHHHHHHHHHcCCCEEEEEee
Confidence            4589999999999999999865444

>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=82.90  E-value=14  Score=28.92  Aligned_cols=78  Identities=8%  Similarity=0.004  Sum_probs=39.5

Q ss_pred             EEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hcc
Q 029271           55 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS  129 (196)
Q Consensus        55 V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~t  129 (196)
                      |+++.-+.++-   ...+.+.+.+++.|.  ++-+......+++..++++.+..++++-+|........  ..+.  -..
T Consensus         2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~~~~~~~   77 (276)
T 2h0a_A            2 VSVLLPFVATEFYRRLVEGIEGVLLEQRY--DLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE--RFEEGRLPT   77 (276)
T ss_dssp             EEEEECCSCCHHHHHHHHHHHHHHGGGTC--EEEECCCCSCCCCC---------CCCSEEEEESCCCC--------CCSC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH--HHHHHHhhc
Confidence            67777655553   345566677778885  55566666666666667777767788766655443221  2222  124


Q ss_pred             CCcEEEe
Q 029271          130 QILVIRV  136 (196)
Q Consensus       130 ~~PVIgv  136 (196)
                      ..||+.+
T Consensus        78 ~iPvV~~   84 (276)
T 2h0a_A           78 ERPVVLV   84 (276)
T ss_dssp             SSCEEEE
T ss_pred             CCCEEEE
Confidence            5788875

>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*

Probab=82.65  E-value=13  Score=29.76  Aligned_cols=82  Identities=11%  Similarity=0.147  Sum_probs=53.5

Q ss_pred             CeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEc--ccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh
Q 029271           53 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA  127 (196)
Q Consensus        53 ~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~S--aHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~  127 (196)
                      ..|+++.-+.++-   ...+.+.+.++++|+  ++-+++  .+..++.-.++++.+..++++-+|........+...+.-
T Consensus         2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~   79 (288)
T 1gud_A            2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGV--SVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVAR   79 (288)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTC--CEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHH
T ss_pred             cEEEEEeCCCCchHHHHHHHHHHHHHHHcCC--EEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHH
Confidence            3688888766653   344566778888995  455555  667777777888888777887666655444443333322


Q ss_pred             --ccCCcEEEe
Q 029271          128 --NSQILVIRV  136 (196)
Q Consensus       128 --~t~~PVIgv  136 (196)
                        ....||+-+
T Consensus        80 ~~~~~iPvV~~   90 (288)
T 1gud_A           80 AWKKGIYLVNL   90 (288)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCeEEEE
Confidence              246898876

>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}

Probab=82.29  E-value=5.3  Score=29.05  Aligned_cols=75  Identities=4%  Similarity=0.050  Sum_probs=52.4

Q ss_pred             eEEEEEc---CCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hc
Q 029271           54 IVGIIME---SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--AN  128 (196)
Q Consensus        54 ~V~IimG---S~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~  128 (196)
                      +|.++||   |+|  =.++++.+.+++.|+++++..+|.+...+.    .     ..+++||...-....+.-+-.  ..
T Consensus         6 kIlvvC~~G~~TS--ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~----~-----~~~D~Ii~t~~l~~~~~~~~~~~~~   74 (109)
T 2l2q_A            6 NILLVCGAGMSTS--MLVQRIEKYAKSKNINATIEAIAETRLSEV----V-----DRFDVVLLAPQSRFNKKRLEEITKP   74 (109)
T ss_dssp             EEEEESSSSCSSC--HHHHHHHHHHHHHTCSEEEEEECSTTHHHH----T-----TTCSEEEECSCCSSHHHHHHHHHHH
T ss_pred             EEEEECCChHhHH--HHHHHHHHHHHHCCCCeEEEEecHHHHHhh----c-----CCCCEEEECCccHHHHHHHHHHhcc
Confidence            5888885   356  566799999999999999988888654432    1     347888887665554444432  23


Q ss_pred             cCCcEEEecCC
Q 029271          129 SQILVIRVPLL  139 (196)
Q Consensus       129 t~~PVIgvP~~  139 (196)
                      ...||+-+++.
T Consensus        75 ~~~pv~~I~~~   85 (109)
T 2l2q_A           75 KGIPIEIINTI   85 (109)
T ss_dssp             HTCCEEECCHH
T ss_pred             cCCCEEEEChH
Confidence            46899888774

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A

Probab=81.99  E-value=4.3  Score=34.43  Aligned_cols=82  Identities=10%  Similarity=0.103  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCCCHH---HHHHHHHHHH----HhCCCeEEEEEcccCCchHH--------------HHHHHHHhhCCCe-
Q 029271           52 APIVGIIMESDLDLP---VMNDAARTLS----DFGVPYEIKILPPHQNCKEA--------------LSYALSAKERGIK-  109 (196)
Q Consensus        52 ~~~V~IimGS~SD~~---~~~~~~~~l~----~~gi~~ev~V~SaHR~p~~~--------------~~~~~~~e~~~~~-  109 (196)
                      ...++|| |+-+=..   +.+++.+...    ...+||  .+.|--..|+++              .+.++..++.|++ 
T Consensus        26 ~k~IGii-GGmg~~aT~~~~~~i~~~~~~~~D~~h~p~--~~~s~~~i~~r~~~~~~~g~~~~~~l~~~~~~L~~~Gad~  102 (268)
T 3s81_A           26 KHTIGIL-GGMGPAATADMLEKFVELRHASCDQQHIPL--IVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAEC  102 (268)
T ss_dssp             CCCEEEE-CCSSHHHHHHHHHHHHHHSCCSSGGGSCCE--EEEECTTSCCHHHHHHHCCCCSHHHHHHHHHHHHHTTCSE
T ss_pred             CCcEEEE-ecCCHHHHHHHHHHHHHhhHhhcCCCCCCE--EEeccCCHHHHHHHHHhCCchHHHHHHHHHHHHHHcCCCE
Confidence            4579999 7777665   5555555442    234554  566665667776              7888888899997 


Q ss_pred             EEEEecCCCCchhHhhhhccCCcEEEec
Q 029271          110 IIIVGDGVEAHLSGVAAANSQILVIRVP  137 (196)
Q Consensus       110 V~IavAG~sa~L~gvvA~~t~~PVIgvP  137 (196)
                      ++|++-..+..+.- +...+..||||+.
T Consensus       103 IVIaCNTah~~l~~-lr~~~~iPvigii  129 (268)
T 3s81_A          103 IVIPCNTAHYWFDD-LQNVAKARMISIL  129 (268)
T ss_dssp             EECSCSGGGGGHHH-HHHHCSSEEECHH
T ss_pred             EEEeCCCHHHHHHH-HHHHCCCCEEccc
Confidence            45555545555544 5556789999963

>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A

Probab=81.26  E-value=11  Score=31.58  Aligned_cols=81  Identities=14%  Similarity=0.062  Sum_probs=53.4

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEc-c-------cCCchHHHHHHHHHhhCCCe-EEEE-ecCCCCc-h
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP-P-------HQNCKEALSYALSAKERGIK-IIIV-GDGVEAH-L  121 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~S-a-------HR~p~~~~~~~~~~e~~~~~-V~Ia-vAG~sa~-L  121 (196)
                      .+|+|++  +.-...-+...+.|+..|+.+..-.+. .       ...++.+.+.++++...|++ ||+. |+++... +
T Consensus       147 ~rvgvlt--p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~  224 (273)
T 2xed_A          147 QRVALVT--PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQMPSLPL  224 (273)
T ss_dssp             CEEEEEE--CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSSSCCTTH
T ss_pred             CeEEEEc--CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCCcchHHh
Confidence            5899996  344445556777888899875322111 1       22456788888888777885 7778 8888763 4


Q ss_pred             hHhhhhccCCcEEE
Q 029271          122 SGVAAANSQILVIR  135 (196)
Q Consensus       122 ~gvvA~~t~~PVIg  135 (196)
                      -.-+...+.+|||-
T Consensus       225 ~~~le~~lg~PVid  238 (273)
T 2xed_A          225 VETAEREFGIPVLS  238 (273)
T ss_dssp             HHHHHHHHSSCEEE
T ss_pred             HHHHHHHhCCCEEc
Confidence            45555556788873

>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*

Probab=80.51  E-value=13  Score=31.45  Aligned_cols=79  Identities=9%  Similarity=0.113  Sum_probs=56.8

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE-c----ccCCchHHHHHHHHH-hhCCCeEEEEecCC----CCchhH
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL-P----PHQNCKEALSYALSA-KERGIKIIIVGDGV----EAHLSG  123 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~-S----aHR~p~~~~~~~~~~-e~~~~~V~IavAG~----sa~L~g  123 (196)
                      .+++.||...    ++++.+.+-.+|..--+.+. .    .|-.+..+.+.+.++ ++.++++|++++..    ++.+++
T Consensus        61 V~av~~G~~~----a~~~lr~ala~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p  136 (255)
T 1efv_B           61 VIAVSCGPAQ----CQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQ  136 (255)
T ss_dssp             EEEEEEESTT----HHHHHHHHHHHTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHH
T ss_pred             EEEEEeCChh----HHHHHHHHHhcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHH
Confidence            5777888644    45555555567999777776 3    477788777766655 34467888887755    488999


Q ss_pred             hhhhccCCcEEEe
Q 029271          124 VAAANSQILVIRV  136 (196)
Q Consensus       124 vvA~~t~~PVIgv  136 (196)
                      .+|+....|.+.-
T Consensus       137 ~lA~~L~~~~vt~  149 (255)
T 1efv_B          137 MTAGFLDWPQGTF  149 (255)
T ss_dssp             HHHHHHTCCEEEE
T ss_pred             HHHHHhCCCcccc
Confidence            9999999998854

>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}

Probab=80.22  E-value=12  Score=27.76  Aligned_cols=128  Identities=14%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             CCeEEEEEcCCC---CHHHHHHHHHHHHHhCCCeEEEEEcccCC----chH--------HHHHHHHHhhCCCeEEEEecC
Q 029271           52 APIVGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQN----CKE--------ALSYALSAKERGIKIIIVGDG  116 (196)
Q Consensus        52 ~~~V~IimGS~S---D~~~~~~~~~~l~~~gi~~ev~V~SaHR~----p~~--------~~~~~~~~e~~~~~V~IavAG  116 (196)
                      .+.|.|..||..   .....+++.+.|+.++.  .+-+..-...    ++.        -.+++   ....+++||.=+|
T Consensus        21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~--~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l---~~~~ad~~I~~~G   95 (170)
T 2o6l_A           21 NGVVVFSLGSMVSNMTEERANVIASALAQIPQ--KVLWRFDGNKPDTLGLNTRLYKWIPQNDLL---GHPKTRAFITHGG   95 (170)
T ss_dssp             TCEEEEECCSCCTTCCHHHHHHHHHHHTTSSS--EEEEECCSSCCTTCCTTEEEESSCCHHHHH---TSTTEEEEEECCC
T ss_pred             CCEEEEECCCCcccCCHHHHHHHHHHHHhCCC--eEEEEECCcCcccCCCcEEEecCCCHHHHh---cCCCcCEEEEcCC
Confidence            356666677764   56677777777776654  3333221111    111        01222   1144799998655


Q ss_pred             CCCchhHhh-hhccCCcEEEecCCCCCCChhhhhhhhcCCCCCeeeEEecC-ChhhHHHHHHHHHcc-CCHHHHHHHHHH
Q 029271          117 VEAHLSGVA-AANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRN-NAKNAALYAVKVLGI-ADEDLLERIRKY  193 (196)
Q Consensus       117 ~sa~L~gvv-A~~t~~PVIgvP~~~~~~~G~DLlS~lqmPsGvpvatV~I~-~~~nAA~~AaqILa~-~d~~l~~kl~~~  193 (196)
                      .    ..+. |-..-.|+|.+|... +..+.. ....+  .|.++  + +. +..+...++..|..+ .|+.++++.+.+
T Consensus        96 ~----~t~~Ea~~~G~P~i~~p~~~-~Q~~na-~~l~~--~g~g~--~-~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~~  164 (170)
T 2o6l_A           96 A----NGIYEAIYHGIPMVGIPLFA-DQPDNI-AHMKA--RGAAV--R-VDFNTMSSTDLLNALKRVINDPSYKENVMKL  164 (170)
T ss_dssp             H----HHHHHHHHHTCCEEECCCST-THHHHH-HHHHT--TTSEE--E-CCTTTCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             c----cHHHHHHHcCCCEEeccchh-hHHHHH-HHHHH--cCCeE--E-eccccCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            3    2222 233679999999852 211111 11122  45433  2 23 112444555555444 688888888776


Q ss_pred             Hh
Q 029271          194 VE  195 (196)
Q Consensus       194 r~  195 (196)
                      ++
T Consensus       165 ~~  166 (170)
T 2o6l_A          165 SR  166 (170)
T ss_dssp             C-
T ss_pred             HH
Confidence            54

>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}

Probab=80.07  E-value=3.9  Score=32.65  Aligned_cols=84  Identities=11%  Similarity=0.028  Sum_probs=50.9

Q ss_pred             CCCeEEEEEcC-CCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh
Q 029271           51 DAPIVGIIMES-DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA  126 (196)
Q Consensus        51 ~~~~V~IimGS-~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA  126 (196)
                      .+..|++++.+ .++   ....+.+.+.+++.|....+..  .+..++...++++.+..++++-+|........ ..+..
T Consensus        10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~   86 (289)
T 3g85_A           10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVI--CPYKTDCLHLEKGISKENSFDAAIIANISNYD-LEYLN   86 (289)
T ss_dssp             -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEE--EEECTTCGGGCGGGSTTTCCSEEEESSCCHHH-HHHHH
T ss_pred             CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEe--cCCCchhHHHHHHHHhccCCCEEEEecCCccc-HHHHH
Confidence            34689999974 333   3456677778888998766543  34445555566677777788766655433222 22332


Q ss_pred             h-ccCCcEEEec
Q 029271          127 A-NSQILVIRVP  137 (196)
Q Consensus       127 ~-~t~~PVIgvP  137 (196)
                      . ...+||+.+=
T Consensus        87 ~~~~~iPvV~~~   98 (289)
T 3g85_A           87 KASLTLPIILFN   98 (289)
T ss_dssp             HCCCSSCEEEES
T ss_pred             hccCCCCEEEEC
Confidence            2 3568988763

>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3

Probab=80.06  E-value=10  Score=31.92  Aligned_cols=79  Identities=14%  Similarity=0.143  Sum_probs=56.3

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE-c----ccCCchHHHHHHHHH-hhCCCeEEEEecCC----CCchhH
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL-P----PHQNCKEALSYALSA-KERGIKIIIVGDGV----EAHLSG  123 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~-S----aHR~p~~~~~~~~~~-e~~~~~V~IavAG~----sa~L~g  123 (196)
                      .+++.||...    ++++.+.+-.+|..--+.+. .    .|-.+..+.+.+.++ ++.++++|++++..    ++.+++
T Consensus        58 V~av~~G~~~----a~~~lr~ala~GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p  133 (252)
T 1efp_B           58 IIAVSIGVKQ----AAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQ  133 (252)
T ss_dssp             EEEEEEESGG----GHHHHHHHHHHTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHH
T ss_pred             EEEEEeCChh----HHHHHHHHHhcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHH
Confidence            5777888644    44444444567999777776 3    366777777766655 34467888887755    488999


Q ss_pred             hhhhccCCcEEEe
Q 029271          124 VAAANSQILVIRV  136 (196)
Q Consensus       124 vvA~~t~~PVIgv  136 (196)
                      .+|+....|.+.-
T Consensus       134 ~lA~~L~~~~vt~  146 (252)
T 1efp_B          134 MLAAILGWAQATF  146 (252)
T ss_dssp             HHHHHHTCEEEEE
T ss_pred             HHHHHhCCCcccc
Confidence            9999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1o4va_	169	c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi	2e-33
d1qcza_	163	c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi	3e-33
d1xmpa_	155	c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi	5e-31
d1u11a_	159	c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi	5e-30

>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Thermotoga maritima [TaxId: 2336]

 Score =  114 bits (288), Expect = 2e-33
 Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
           P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA +A+ERGI++II
Sbjct: 1   PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAKNA 171
            G G  AHL G+ A+ + + VI VP+ +   +  D + + ++MP  V VA+V  NNAKNA
Sbjct: 61  AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 120

Query: 172 ALYAVKVLGIADEDLLERIRKYVEE 196
            + A  +LGI   ++  ++++Y E 
Sbjct: 121 GILAASILGIKYPEIARKVKEYKER 145

>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Escherichia coli [TaxId: 562]

 Score =  114 bits (287), Expect = 3e-33
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
             V I+M S  D   M  AA       VP+ ++++  H+   +  S+A SA+E G ++II
Sbjct: 2   ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD---VINSIRMPSHVQVASVPRNNAK 169
            G G  AHL G+ AA + + V+ VP+ S   S  D    I  +     V   ++ +  A 
Sbjct: 62  AGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAA 121

Query: 170 NAALYAVKVLGIADEDLLERIRKYVEE 196
           NAAL A ++L   D++L +R+  + + 
Sbjct: 122 NAALLAAQILATHDKELHQRLNDWRKA 148

>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Length = 155

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Bacillus anthracis [TaxId: 1392]

 Score =  108 bits (272), Expect = 5e-31
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 53  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 112
            +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+K+II
Sbjct: 2   SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61

Query: 113 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRM---PSHVQVASVPRNNAK 169
            G G  AHL G+ AA + + VI VP+ S+  +  D + SI        V   ++ +  + 
Sbjct: 62  AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 121

Query: 170 NAALYAVKVLGIADEDLLERIRKYVEE 196
           NA L A ++LG   +D+ + +    E 
Sbjct: 122 NAGLLAAQILGSFHDDIHDALELRREA 148

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Length = 159

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Acetobacter aceti [TaxId: 435]

 Score =  106 bits (265), Expect = 5e-30
 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 52  APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 111
           AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+ +I
Sbjct: 2   APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 61

Query: 112 IVGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMP--SHVQVASVPRNNA 168
           I G G  AHL G+ AA +++ V+ VP+        D +++ ++MP    V   ++  + A
Sbjct: 62  IAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGA 121

Query: 169 KNAALYAVKVLGIADEDLLERIRKYVEE 196
           KNAAL A  +L + +  L  R+  +   
Sbjct: 122 KNAALLAASILALYNPALAARLETWRAL 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1o4va_	169	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	100.0
d1u11a_	159	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	100.0
d1xmpa_	155	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	100.0
d1qcza_	163	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	100.0
d1jq5a_	366	Glycerol dehydrogenase {Bacillus stearothermophilu	97.46
d1o2da_	359	Alcohol dehydrogenase TM0920 {Thermotoga maritima	96.86
d1vlja_	398	NADH-dependent butanol dehydrogenase A (TM0820) {T	96.48
d1rrma_	385	Lactaldehyde reductase FucO {Escherichia coli [Tax	95.93
d2dria_	271	D-ribose-binding protein {Escherichia coli, strain	95.89
d2bona1	295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	95.5
d2pjua1	186	Propionate catabolism operon regulatory protein Pr	95.33
d2nzug1	275	Glucose-resistance amylase regulator CcpA, C-termi	95.1
d1kq3a_	364	Glycerol dehydrogenase {Thermotoga maritima [TaxId	94.58
d1oj7a_	390	Hypothetical oxidoreductase yqhD {Escherichia coli	93.44
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	93.06
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	92.12
d1sg6a_	389	Dehydroquinate synthase, DHQS {Aspergillus nidulan	91.84
d1jx6a_	338	Quorum-sensing signal (autoinducer-2) binding prot	91.27
d1byka_	255	Trehalose repressor, C-terminal domain {Escherichi	91.26
d1guda_	288	D-allose-binding protein {Escherichia coli [TaxId:	91.1
d2qv7a1	312	Diacylglycerol kinase DgkB {Staphylococcus aureus	90.63
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	89.82
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	88.19
d1ujna_	347	Dehydroquinate synthase, DHQS {Thermus thermophilu	88.08
d1utaa_	77	Cell division protein FtsN {Escherichia coli [TaxI	88.03
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	86.85
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	85.39
d2fvya1	305	Galactose/glucose-binding protein {Escherichia col	85.31
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	83.63
d1pfka_	320	ATP-dependent phosphofructokinase {Escherichia col	82.75
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	82.75
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.5
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	82.05
d1v4va_	373	UDP-N-acetylglucosamine 2-epimerase {Thermus therm	80.92
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	80.58

>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.7e-58  Score=375.87  Aligned_cols=144  Identities=43%  Similarity=0.705  Sum_probs=141.9

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  132 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P  132 (196)
                      |+|+|||||+||+++++|+.++|++|||+|+++|.|+||+|+++++|++++++++++|||++||+++|||||+||+|++|
T Consensus         1 PkV~Ii~Gs~SD~~~~~~a~~~L~~~gi~~~~~v~saHr~p~rl~~~~~~~~~~~~~viIa~AG~aa~LpgvvA~~t~~P   80 (169)
T d1o4va_           1 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLP   80 (169)
T ss_dssp             CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSC
T ss_pred             CeEEEEECcHhhHHHHHHHHHHHHHcCCcEEEEEeeeecCHHHHHHHHHHHHhcCCeEEEEeecCCcCchHHHHHhccee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          133 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       133 VIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      |||||++++.++|+| ||||+|||+|+||+||||||++|||++|+|||+++|++||+||++||++
T Consensus        81 VIgvP~~~~~~~G~daLlS~lqmp~gvpVatV~Id~~~nAA~~A~~Il~l~d~~i~~kl~~~r~~  145 (169)
T d1o4va_          81 VIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKER  145 (169)
T ss_dssp             EEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EEecccccccCccHHHHHHhccCCccCCceeeecCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999974

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Acetobacter aceti [TaxId: 435]

Probab=100.00  E-value=6.2e-58  Score=372.57  Aligned_cols=145  Identities=35%  Similarity=0.547  Sum_probs=140.8

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      .|+|+|||||+||+++|+|+.++|++|||+||++|+||||+|+++++|++++|+++++|||++|||+||||||+||+|++
T Consensus         2 ~P~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~v~SAHR~p~~l~~~~~~~e~~~~~viIa~AG~aaaLpgvva~~t~~   81 (159)
T d1u11a_           2 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRL   81 (159)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred             cCeEEEEeCCHhhHHHHHHHHHHHHHhCCceEEEEehHhhChHHHHHHHHHHHhcCCeEEEEEecCCCCCccceeeecce
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEec--CChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPR--NNAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I--~~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||||++++.++|+| |||++|||+|+||+|++|  +|++|||++|+|||+++|+++|+||++||++
T Consensus        82 PVIgvP~~~~~~~g~d~l~S~~qMP~g~pv~tv~vg~~~~~nAa~~A~~IL~~~d~~l~~kl~~~r~~  149 (159)
T d1u11a_          82 PVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRAL  149 (159)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred             eEEEeccccccccccccHHHHhhCcCCCCceEEEecCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999 999999999999999655  5999999999999999999999999999974

>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Bacillus anthracis [TaxId: 1392]

Probab=100.00  E-value=1.4e-57  Score=369.14  Aligned_cols=145  Identities=35%  Similarity=0.573  Sum_probs=141.7

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI  131 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~  131 (196)
                      ++.|+|||||+||+++++|+.++|++|||+||++|.||||+|+++.+|++++++++++|||++|||+||||||+||+|++
T Consensus         1 K~~V~IimGS~SD~~~~~~a~~~L~~~gi~~~~~v~SAHrtp~rl~~~~~~~~~~~~~viIa~AG~aa~Lpgvva~~t~~   80 (155)
T d1xmpa_           1 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL   80 (155)
T ss_dssp             CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS
T ss_pred             CCEEEEEECcHhhHHHHHHHHHHHHHcCCcEEEEEechhcChHHHHHHHHHHHhhcceEEEeecccCCCchhHHHHhccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          132 LVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       132 PVIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      ||||||++++.++|+| |||++|||+|+||+||+|+  |++|||++|+|||+++|++||+||+.||++
T Consensus        81 PVIgVP~~~~~~~G~d~llS~vqMP~Gipv~tv~v~~~~~~nAa~~A~~Il~~~d~~l~~~l~~~r~~  148 (155)
T d1xmpa_          81 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREA  148 (155)
T ss_dssp             CEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             eEEEEEeecccCcCcccHHHHHhCccCCCceEEEecCcchHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            9999999999999999 9999999999999999999  889999999999999999999999999974

>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-57  Score=369.93  Aligned_cols=144  Identities=32%  Similarity=0.497  Sum_probs=140.9

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCc
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL  132 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~P  132 (196)
                      ++|+|||||+||+++|+|+.++|++|||+||++|+||||+|+++.+|++++++++++|||++||++||||||+||+|++|
T Consensus         2 aKV~IImGS~SD~~~~~~a~~~L~~~gI~~e~~v~SAHRtp~~l~~~~~~~~~~~~~ViIa~AG~aa~LpgvvA~~t~~P   81 (163)
T d1qcza_           2 ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVP   81 (163)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHHTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEECSSCCHHHHHHHSCSSC
T ss_pred             CeEEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEeccccCHHHHHHHHHHHHHcCCeEEEEeccCCCcccchhhHhccce
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhh-hhhhhcCCCCCeeeEEecC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 029271          133 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN--NAKNAALYAVKVLGIADEDLLERIRKYVEE  196 (196)
Q Consensus       133 VIgvP~~~~~~~G~D-LlS~lqmPsGvpvatV~I~--~~~nAA~~AaqILa~~d~~l~~kl~~~r~~  196 (196)
                      |||||++++.++|+| |||++|||+|+||+||+|+  |++|||++|+|||+++|+++|+||++||++
T Consensus        82 VIgVP~~~~~~~g~d~lls~~qMp~g~pv~tv~v~~~~~~nAal~A~~IL~~~d~~l~~kl~~~r~~  148 (163)
T d1qcza_          82 VLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKA  148 (163)
T ss_dssp             EEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             eeeccccccccCCcchhhHHhhccCCCCceEEEEecCchHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999998877  999999999999999999999999999973

>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Glycerol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.46  E-value=5.6e-05  Score=64.26  Aligned_cols=89  Identities=13%  Similarity=0.060  Sum_probs=75.5

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccCC
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI  131 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~~  131 (196)
                      .++.||+++.+--...+++.+.|++.|+.++.-+...+-+.+.+.+.++.++..++++||++.|++ --++..+|.....
T Consensus        31 ~r~lvvtd~~~~~~~~~~l~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IiavGGGs~iD~aK~iA~~~~~  110 (366)
T d1jq5a_          31 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDA  110 (366)
T ss_dssp             SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCcHHHHHHHHHHHHHHHCCCeEEEEEeCCCCCHHHHHHHHHHhhccCCcEEEEecCCccccchheeeecccc
Confidence            589999987765555688899999999988766767788888889999999999999999999885 5688999999999


Q ss_pred             cEEEecCCCC
Q 029271          132 LVIRVPLLSE  141 (196)
Q Consensus       132 PVIgvP~~~~  141 (196)
                      |+|.||+..+
T Consensus       111 p~i~IPTT~g  120 (366)
T d1jq5a_         111 YIVIVPTAAS  120 (366)
T ss_dssp             EEEEEESSCC
T ss_pred             eeeehhhhhh
Confidence            9999999753

>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Alcohol dehydrogenase TM0920
species: Thermotoga maritima [TaxId: 2336]

Probab=96.86  E-value=0.0015  Score=55.30  Aligned_cols=89  Identities=10%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             CeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEE-EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh-
Q 029271           53 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-  127 (196)
Q Consensus        53 ~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~-  127 (196)
                      .++.||+|..+  -....+++.+.|++.|+.+.+ .=...+-+.+.+.+.++.+.+.++++||++.|++.. ++-.+|. 
T Consensus        29 ~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~  108 (359)
T d1o2da_          29 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVL  108 (359)
T ss_dssp             SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHhhhhccccCCceEEecccccchhHHHHHHHH
Confidence            58999998765  234789999999999998765 334578888999999999999999999999999654 5555554 


Q ss_pred             -----------------ccCCcEEEecCCCC
Q 029271          128 -----------------NSQILVIRVPLLSE  141 (196)
Q Consensus       128 -----------------~t~~PVIgvP~~~~  141 (196)
                                       ....|+|.+|+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g  139 (359)
T d1o2da_         109 LKEKDLSVEDLYDREKVKHWLPVVEIPTTAG  139 (359)
T ss_dssp             TTSTTCCSGGGGCGGGCCCCCCEEEEECSSC
T ss_pred             HhCCCCchhhccCcccccCCCCeEEeccccc
Confidence                             35689999999754

>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: NADH-dependent butanol dehydrogenase A (TM0820)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0033  Score=53.75  Aligned_cols=89  Identities=13%  Similarity=0.103  Sum_probs=67.5

Q ss_pred             CeEEEEEcCCCC--HHHHHHHHHHHHHhCCCeEEE-EEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhhh-
Q 029271           53 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-  127 (196)
Q Consensus        53 ~~V~IimGS~SD--~~~~~~~~~~l~~~gi~~ev~-V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA~-  127 (196)
                      .+|.||+|..+=  ....+++...|++.|+.+.+- -...+-+-+.+.+.++.+...++++||++.|++.. .+-.+|. 
T Consensus        35 ~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~  114 (398)
T d1vlja_          35 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAG  114 (398)
T ss_dssp             CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH
T ss_pred             CeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCCCHHHHHHHhhhcccccCceEEecCCcchhhHHHHHHHH
Confidence            589999987653  347899999999999976542 12345567899999999999999999999999653 3444443 


Q ss_pred             -----------------ccCCcEEEecCCCC
Q 029271          128 -----------------NSQILVIRVPLLSE  141 (196)
Q Consensus       128 -----------------~t~~PVIgvP~~~~  141 (196)
                                       ...+|+|.||+..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~P~i~iPTt~g  145 (398)
T d1vlja_         115 ALYEGDIWDAFIGKYQIEKALPIFDVLTISA  145 (398)
T ss_dssp             TTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred             hhcccchHHhhcccccccCCCCeeeeecccc
Confidence                             34689999999753

>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Lactaldehyde reductase FucO
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0031  Score=53.51  Aligned_cols=89  Identities=13%  Similarity=0.207  Sum_probs=65.0

Q ss_pred             CeEEEEEcCCC-CHHHHHHHHHHHHHhCCCeEEEE-EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchh----Hhhh
Q 029271           53 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAA  126 (196)
Q Consensus        53 ~~V~IimGS~S-D~~~~~~~~~~l~~~gi~~ev~V-~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~----gvvA  126 (196)
                      .++.|++|+.. .....+++.+.|++-|+.+.+.- ...|-+.+.+.+.++.+++.++++||++.|+|.-=.    .+++
T Consensus        31 k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~aK~ia~~~  110 (385)
T d1rrma_          31 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIIS  110 (385)
T ss_dssp             CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred             CEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHHhhhhhccCCCEEEecCCCchhhHHHHHHHHh
Confidence            57889987542 33467899999999999776421 125778899999999999999999999999975211    1222


Q ss_pred             hc-----------------cCCcEEEecCCCC
Q 029271          127 AN-----------------SQILVIRVPLLSE  141 (196)
Q Consensus       127 ~~-----------------t~~PVIgvP~~~~  141 (196)
                      .+                 ..+|+|.+|+..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~lP~i~IPTtag  142 (385)
T d1rrma_         111 NNPEFADVRSLEGLSPTNKPSVPILAIPTTAG  142 (385)
T ss_dssp             HCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred             cCCccchhhhhhccccccCCCCceEecccccc
Confidence            22                 2489999999753

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-ribose-binding protein
species: Escherichia coli, strain k-12 [TaxId: 562]

Probab=95.89  E-value=0.14  Score=38.56  Aligned_cols=83  Identities=14%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             eEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hc
Q 029271           54 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--AN  128 (196)
Q Consensus        54 ~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~  128 (196)
                      .|++|+-+.+|   ....+.+.+.++++|+  ++.+...+..++.-.+.++++-.+|++.+|............+.  ..
T Consensus         3 tIgvvvp~~~~~f~~~~~~gi~~~a~~~g~--~~~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~   80 (271)
T d2dria_           3 TIALVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ   80 (271)
T ss_dssp             EEEEEESCSSSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCcccccccccccchHHHHHHHhh
Confidence            59999999888   5667788888999996  56678889999999999999999999888877666666666553  34


Q ss_pred             cCCcEEEecC
Q 029271          129 SQILVIRVPL  138 (196)
Q Consensus       129 t~~PVIgvP~  138 (196)
                      ...|||.+..
T Consensus        81 ~~ipvV~~~~   90 (271)
T d2dria_          81 ANIPVITLDR   90 (271)
T ss_dssp             TTCCEEEESS
T ss_pred             cceeEEEecc
Confidence            6789998864

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.018  Score=46.47  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             EEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc-----cCCc
Q 029271           58 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-----SQIL  132 (196)
Q Consensus        58 imGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~-----t~~P  132 (196)
                      +=+...+-...+++...|++.|++++++++.   ...+..++++++..+++++ |+++|+.+.+.-|+.++     ...|
T Consensus         7 ~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~---~~g~a~~~~~~~~~~~~d~-Ivv~GGDGTv~ev~~gl~~~~~~~~p   82 (295)
T d2bona1           7 LNGKSTDNLPLREAIMLLREEGMTIHVRVTW---EKGDAARYVEEARKFGVAT-VIAGGGDGTINEVSTALIQCEGDDIP   82 (295)
T ss_dssp             ECSSSTTCHHHHHHHHHHHTTTCCEEEEECC---STTHHHHHHHHHHHHTCSE-EEEEESHHHHHHHHHHHHHCCSSCCC
T ss_pred             ECCCCCCchHHHHHHHHHHHCCCEEEEEEcC---CcchHHHHHHHHHhcCCCE-EEEECCCcHHHHHHHHHHhccCCCCc
Confidence            3344445556788999999999999999863   3567888999988888886 45667788888888764     3457


Q ss_pred             EEEe
Q 029271          133 VIRV  136 (196)
Q Consensus       133 VIgv  136 (196)
                      .|++
T Consensus        83 ~lgi   86 (295)
T d2bona1          83 ALGI   86 (295)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            7777

>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: PrpR receptor domain-like
family: PrpR receptor domain-like
domain: Propionate catabolism operon regulatory protein PrpR
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.051  Score=42.55  Aligned_cols=115  Identities=14%  Similarity=0.111  Sum_probs=77.8

Q ss_pred             HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHH-HhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCCCCCCChhhh
Q 029271           70 DAARTLSDFGVPYEIKILPPHQNCKEALSYALS-AKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDV  148 (196)
Q Consensus        70 ~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~-~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~~~~~~G~DL  148 (196)
                      -..+++.+|.-..++.|.  -.+.++..+.+.+ .+..+++|||+-.|    -+.++-.+++.|||.++++     |.|+
T Consensus        15 l~~~i~~ey~~~~~i~v~--~~~~e~av~~~~~~~~~~~~DviISRG~----ta~~ir~~~~iPVV~I~vs-----~~Di   83 (186)
T d2pjua1          15 LFRDISLEFDHLANITPI--QLGFEKAVTYIRKKLANERCDAIIAAGS----NGAYLKSRLSVPVILIKPS-----GYDV   83 (186)
T ss_dssp             HHHHHHTTTTTTCEEEEE--CCCHHHHHHHHHHHTTTSCCSEEEEEHH----HHHHHHTTCSSCEEEECCC-----HHHH
T ss_pred             HHHHHHHHhcCCceEEee--cCcHHHHHHHHHHHHHcCCCCEEEECch----HHHHHHHhCCCCEEEEcCC-----HhHH
Confidence            344555566655566654  4566777776554 56788999999554    4566778899999999875     5774


Q ss_pred             hhhhcCC--CCCeeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 029271          149 INSIRMP--SHVQVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE  195 (196)
Q Consensus       149 lS~lqmP--sGvpvatV~I~~~~nAA~~AaqILa~~--------d~~l~~kl~~~r~  195 (196)
                      +..+.-.  .+-.++.|+-.+.....-.-.++|++.        .++++..++..++
T Consensus        84 l~al~~a~~~~~kiavV~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~  140 (186)
T d2pjua1          84 LQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA  140 (186)
T ss_dssp             HHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEeCCccchHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence            4444421  223588888788777777778888863        4466777766654

>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Glucose-resistance amylase regulator CcpA, C-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=95.10  E-value=0.39  Score=36.35  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=61.0

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      +..||||+.+-+|.   ...+.+.+.+++.|+  ++.+.+.+-.+++-.++++.....+++-+|........--.-....
T Consensus         3 t~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~e~~~i~~~~~~~vdgii~~~~~~~~~~~~~l~~   80 (275)
T d2nzug1           3 TTTVGVIIPDISNIFYAELARGIEDIATMYKY--NIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKK   80 (275)
T ss_dssp             CSEEEEEESCTTSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHTTCCSEEEECCSCCCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHcCC--EEEEEECCCCHHHHHHHHHHHHhcCCceeeccccchhhHHHHHHhh
Confidence            45799999888883   456778888889886  6678888999999999999888888876665554443333333345


Q ss_pred             cCCcEEEec
Q 029271          129 SQILVIRVP  137 (196)
Q Consensus       129 t~~PVIgvP  137 (196)
                      ...||+.+=
T Consensus        81 ~~~pvv~~~   89 (275)
T d2nzug1          81 SPVPVVLAA   89 (275)
T ss_dssp             CSSCEEEES
T ss_pred             ccccccccc
Confidence            677877654

>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Glycerol dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.58  E-value=0.0012  Score=55.30  Aligned_cols=86  Identities=12%  Similarity=0.115  Sum_probs=60.2

Q ss_pred             CeEEEEEcCCCCH-HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCC-CchhHhhhhccC
Q 029271           53 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQ  130 (196)
Q Consensus        53 ~~V~IimGS~SD~-~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~s-a~L~gvvA~~t~  130 (196)
                      .++.||+++.... ...+++.+.|++.|+.++  +.+ |-.++...+-+.++.+.++++||++.|+| --++..+|-...
T Consensus        31 ~r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~--v~~-~~~~~~~i~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~  107 (364)
T d1kq3a_          31 ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQ--IFG-GECSDEEIERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLK  107 (364)
T ss_dssp             SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEE--ECC-SSCBHHHHHHHHTTCCTTCCEEEEEESHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCchhhhHHHHHHHHHHHhcCCeEE--ecC-CCCCcHHHHHHHHHhhccCcEEEEeccCccceeecccccccc
Confidence            4788998764432 234566666666666544  343 45555555556666667889999999885 457788889999


Q ss_pred             CcEEEecCCCC
Q 029271          131 ILVIRVPLLSE  141 (196)
Q Consensus       131 ~PVIgvP~~~~  141 (196)
                      +|+|.||+..+
T Consensus       108 ~P~I~IPTTa~  118 (364)
T d1kq3a_         108 KPVVIVPTIAS  118 (364)
T ss_dssp             CCEEEEESSCC
T ss_pred             ccceeeccccc
Confidence            99999999753

>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Hypothetical oxidoreductase yqhD
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.02  Score=48.73  Aligned_cols=86  Identities=17%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CCeEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEE--EEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCc-hhHhhh
Q 029271           52 APIVGIIMESDL--DLPVMNDAARTLSDFGVPYEI--KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA  126 (196)
Q Consensus        52 ~~~V~IimGS~S--D~~~~~~~~~~l~~~gi~~ev--~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~-L~gvvA  126 (196)
                      ..+|.||+|..+  ...+.+++...|+  |+.+.+  .| ..|-+.+.+.+.++.+.+.++++||++.|+|.. ++-.++
T Consensus        32 ~~~vliV~~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v-~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia  108 (390)
T d1oj7a_          32 DARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGI-EPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIA  108 (390)
T ss_dssp             TCEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCC-CSSCBHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHH
T ss_pred             CCCEEEEECCchHHHccHHHHHHHHcC--CCcEEEEeCc-cCCCCHHHHHHHHHHHhhcCCCEEEecCCCccccHHHHHH
Confidence            358999998865  3446677777775  443332  22 367788899999999999899999999998643 222232


Q ss_pred             hc---------------------cCCcEEEecCCC
Q 029271          127 AN---------------------SQILVIRVPLLS  140 (196)
Q Consensus       127 ~~---------------------t~~PVIgvP~~~  140 (196)
                      ..                     ..+|+|.||+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta  143 (390)
T d1oj7a_         109 AAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP  143 (390)
T ss_dssp             HHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred             HHhcCCcccchhhhhcccccccccCCCcccccccc
Confidence            22                     236999999964

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=93.06  E-value=1.3  Score=33.46  Aligned_cols=86  Identities=14%  Similarity=0.045  Sum_probs=64.0

Q ss_pred             CCeEEEEEcCCCC---HHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh--h
Q 029271           52 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--A  126 (196)
Q Consensus        52 ~~~V~IimGS~SD---~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv--A  126 (196)
                      ..+|++|.-+.++   ....+.+.+.++++|+.+.+ +...+-.+++-.+.++++-..+++.||....-+..+...+  +
T Consensus         3 ~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~-~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~~~~~~~~a   81 (316)
T d1tjya_           3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTY-DGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA   81 (316)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEE-CCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEE-EECCCCCHHHHHHHHHHHHhcCCCeeeecccccchhhhhhhhh
Confidence            3589999888777   45667888888999975433 2246778888889999998899998888777776666655  4


Q ss_pred             hccCCcEEEecC
Q 029271          127 ANSQILVIRVPL  138 (196)
Q Consensus       127 ~~t~~PVIgvP~  138 (196)
                      .....||+.+-.
T Consensus        82 ~~~gi~vv~~d~   93 (316)
T d1tjya_          82 MQRGVKILTWDS   93 (316)
T ss_dssp             HHTTCEEEEESS
T ss_pred             hcccccceeccc
Confidence            456678887643

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=1.7  Score=32.50  Aligned_cols=84  Identities=10%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             eEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEe-cCCCCchhHhhhhcc
Q 029271           54 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG-DGVEAHLSGVAAANS  129 (196)
Q Consensus        54 ~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Iav-AG~sa~L~gvvA~~t  129 (196)
                      .|++|.-+.+|-   ...+.+.+.|++.|.  .+.+...+..+++..++++.+..++++-+|.. ........-.....-
T Consensus         2 tIg~i~~~~~~pf~~~~~~gi~~~~~~~gy--~~~~~~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~   79 (282)
T d1dbqa_           2 SIGLLATSSEAAYFAEIIEAVEKNCFQKGY--TLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYR   79 (282)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEeeecccccchhhhhHHhhc
Confidence            588888877773   445777788888886  66777888999999999999998899755544 444444444444445


Q ss_pred             CCcEEEecCC
Q 029271          130 QILVIRVPLL  139 (196)
Q Consensus       130 ~~PVIgvP~~  139 (196)
                      ..||+.+-..
T Consensus        80 ~iPvV~~~~~   89 (282)
T d1dbqa_          80 HIPMVVMDWG   89 (282)
T ss_dssp             TSCEEEEECS
T ss_pred             CCCceEEEec
Confidence            7888877543

>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.84  E-value=0.082  Score=45.19  Aligned_cols=88  Identities=9%  Similarity=0.098  Sum_probs=66.0

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCC----eEE--EEEc---ccCCchHHHHHHHHHhhCCC-----eEEEEecCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVP----YEI--KILP---PHQNCKEALSYALSAKERGI-----KIIIVGDGV  117 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~----~ev--~V~S---aHR~p~~~~~~~~~~e~~~~-----~V~IavAG~  117 (196)
                      ..++.||+...-.--+.+++.+.|+..|+.    +.+  .+.-   .+|+.+...++.+.+...++     +++|++.|+
T Consensus        33 ~~~~~ivtD~~v~~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~~gE~~Ks~~~~~~i~~~~~~~~~~~~r~d~IiaiGGG  112 (389)
T d1sg6a_          33 STTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGG  112 (389)
T ss_dssp             CSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESH
T ss_pred             CCcEEEEECCchHHHHHHHHHHHHHHhCcccccCcceEEEEecCCcccCCHHHHHHHHHHHHhcCCCcCCCceEEEeccc
Confidence            357999988776666788889999876653    222  2222   58899999999988876663     577877766


Q ss_pred             -CCchhHhhhhc--cCCcEEEecCC
Q 029271          118 -EAHLSGVAAAN--SQILVIRVPLL  139 (196)
Q Consensus       118 -sa~L~gvvA~~--t~~PVIgvP~~  139 (196)
                       ..-+++++|+.  ...|.|.||+.
T Consensus       113 ~v~D~ak~~A~~y~rgi~~i~vPTt  137 (389)
T d1sg6a_         113 VIGDLTGFVASTYMRGVRYVQVPTT  137 (389)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEEEECS
T ss_pred             hHHHHHHHHHHHHhcCCceeEeccc
Confidence             78899999974  67999999996

>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Quorum-sensing signal (autoinducer-2) binding protein LuxP
species: Vibrio harveyi [TaxId: 669]

Probab=91.27  E-value=2  Score=33.75  Aligned_cols=84  Identities=12%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             CeEEEEEcCC--CCH--HHHHHHHHHHHHhCCCeEEEE--EcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhh-
Q 029271           53 PIVGIIMESD--LDL--PVMNDAARTLSDFGVPYEIKI--LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-  125 (196)
Q Consensus        53 ~~V~IimGS~--SD~--~~~~~~~~~l~~~gi~~ev~V--~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvv-  125 (196)
                      .+|+|++=+.  |+.  ...+.+.+.++++|..|.+..  +..+-.++.-.+.++++..++++.||.....+.+.+.+. 
T Consensus        41 ~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~~~~i~~~~~~s~~d~~~q~~~i~~~i~~~vDgIIi~~~~~~~~~~i~~  120 (338)
T d1jx6a_          41 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH  120 (338)
T ss_dssp             EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCcccchHHHHH
Confidence            3799998553  563  345667888999999988754  445666677777888888888987776555556655543 


Q ss_pred             -hhccCCcEEEe
Q 029271          126 -AANSQILVIRV  136 (196)
Q Consensus       126 -A~~t~~PVIgv  136 (196)
                       +.....||+-.
T Consensus       121 ~~~~~~ipvv~~  132 (338)
T d1jx6a_         121 VLDSTNTKLILQ  132 (338)
T ss_dssp             HHHHCSCEEEEE
T ss_pred             HHHhCCCeEEEE
Confidence             23356788754

>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.94  Score=34.41  Aligned_cols=60  Identities=15%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             CCeEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEE
Q 029271           52 APIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV  113 (196)
Q Consensus        52 ~~~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~Ia  113 (196)
                      +..|+|+.-+.++.   ...+.+.+.+++.|  |++-++..+..+++..+.++.+...+++-||.
T Consensus         2 ~k~Igvi~p~~~~~~~~~~~~~i~~~~~~~G--y~~~~~~s~~d~~~~~~~i~~l~~~~vdgiIi   64 (255)
T d1byka_           2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQG--YDPIMMESQFSPQLVAEHLGVLKRRNIDGVVL   64 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHHT--CEEEEEECTTCHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhccccceee
Confidence            35799999877776   56677888888899  56777778999999999999998888875554

>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-allose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=1.3  Score=33.60  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhh--hc
Q 029271           54 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--AN  128 (196)
Q Consensus        54 ~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA--~~  128 (196)
                      ..++|+.+.+|-   ...+.+.+.++++|..+.+-..+.+-.+++-.+.++++.+++++.||.....+..+...+.  ..
T Consensus         3 ~~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l~~~~~   82 (288)
T d1guda_           3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWK   82 (288)
T ss_dssp             EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCCcchhhHHHHHHHh
Confidence            578999998883   4556677777889988777667788888888888899989999877777666666655443  35


Q ss_pred             cCCcEEEecC
Q 029271          129 SQILVIRVPL  138 (196)
Q Consensus       129 t~~PVIgvP~  138 (196)
                      -..|||.+-.
T Consensus        83 ~gipvv~~d~   92 (288)
T d1guda_          83 KGIYLVNLDE   92 (288)
T ss_dssp             TTCEEEEESS
T ss_pred             CCCeEEEeCC
Confidence            7799988643

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.63  E-value=0.32  Score=38.87  Aligned_cols=82  Identities=18%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             CeEEEEE----cCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhc
Q 029271           53 PIVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN  128 (196)
Q Consensus        53 ~~V~Iim----GS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~  128 (196)
                      .++.||.    |+..-....+++.+.|+..|+.+++..+   ..+....++++++..++.++|| ++|+.+.+.-++.+.
T Consensus         3 kr~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~d~iv-v~GGDGTv~~v~~~l   78 (312)
T d2qv7a1           3 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYAT---EKIGDATLEAERAMHENYDVLI-AAGGDGTLNEVVNGI   78 (312)
T ss_dssp             EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEEC---CSTTHHHHHHHHHTTTTCSEEE-EEECHHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCCcHHHHHHHHHHHHHHCCCeEEEEEc---CCccHHHHHHHHHHHcCCCEEE-EEcCCcHHHHHHHHH
Confidence            3566666    4434456677888899888988777654   3567788888888888888766 477788888888775


Q ss_pred             ---cCCcEEEe-cC
Q 029271          129 ---SQILVIRV-PL  138 (196)
Q Consensus       129 ---t~~PVIgv-P~  138 (196)
                         -..|-|++ |.
T Consensus        79 ~~~~~~~~l~iiP~   92 (312)
T d2qv7a1          79 AEKPNRPKLGVIPM   92 (312)
T ss_dssp             TTCSSCCEEEEEEC
T ss_pred             HhhccccceEEeec
Confidence               23344555 54

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.82  E-value=0.91  Score=31.96  Aligned_cols=67  Identities=21%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             HHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh--------hhhccCCcEEEecCCC
Q 029271           70 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLLS  140 (196)
Q Consensus        70 ~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--------vA~~t~~PVIgvP~~~  140 (196)
                      ++...++..|++++..+..-    +-...+++.++..+++.+|.+.-.-+.+..+        +.-+++.||+-||..+
T Consensus        85 ~~~~~~~~~gv~~~~~~~~G----~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~pVlvV~~~~  159 (160)
T d1mjha_          85 NIKKELEDVGFKVKDIIVVG----IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKN  159 (160)
T ss_dssp             HHHHHHHHTTCEEEEEEEEE----CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCCC
T ss_pred             HHHHHHHhcCCeEEEEEEec----cHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCCCEEEEcCCC
Confidence            34445567889888877753    2344566667778898888775333333332        3346899999999865

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.19  E-value=0.8  Score=33.04  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHh--------hhhccCCcEEEecC
Q 029271           67 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPL  138 (196)
Q Consensus        67 ~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gv--------vA~~t~~PVIgvP~  138 (196)
                      .+++....++..|++++..+..  ..|  ...+++.++..+++.+|.++-.-+.+..+        +.-++..||+-||.
T Consensus        84 ~l~~~~~~~~~~~~~~~~~v~~--G~~--~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~lGSv~~~vi~~~~cpVlvV~~  159 (171)
T d2gm3a1          84 LLEFFVNKCHEIGVGCEAWIKT--GDP--KDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKR  159 (171)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEEE--SCH--HHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEEC
T ss_pred             HHHHHHHHHHhcCCceEEEEEe--CCh--HHHHHHHHhhcCCcEEEeccCCccccccCccCcHHHHHHhCCCCCEEEEeC
Confidence            4456667777889998877652  222  44566667777887776665544555543        33467899999987


Q ss_pred             CC
Q 029271          139 LS  140 (196)
Q Consensus       139 ~~  140 (196)
                      ..
T Consensus       160 ~~  161 (171)
T d2gm3a1         160 NA  161 (171)
T ss_dssp             CG
T ss_pred             CC
Confidence            64

>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Thermus thermophilus [TaxId: 274]

Probab=88.08  E-value=0.74  Score=38.16  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEE--cccCCchHHHHHHHHHhhCCC---eEEEEecCC-CCchhHhhh
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL--PPHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAA  126 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~--SaHR~p~~~~~~~~~~e~~~~---~V~IavAG~-sa~L~gvvA  126 (196)
                      .++.||+...-    .+-..+.++.+.-.+-+.+-  -.+|+.+.+.++.+.+.+.++   +++|++.|+ ..-++|++|
T Consensus        29 ~k~~iV~D~~V----~~~~~~~~~~l~~~~i~~i~~gE~~Ksl~~~~~i~~~l~~~~~~r~~~iiaiGGG~v~D~agf~A  104 (347)
T d1ujna_          29 GPAALLFDRRV----EGFAQEVAKALGVRHLLGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVA  104 (347)
T ss_dssp             SCEEEEEEGGG----HHHHHHHHHHHTCCCEEEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHH
T ss_pred             CCEEEEECccH----HHHHHHHHHhcCCceEEEECCCcccCCHHHHHHHHHHHHHhhcccccceeEeechhhhhHHHHHh
Confidence            46788875543    33333444555554333333  258899999999988866655   577777776 678999999


Q ss_pred             h--ccCCcEEEecCC
Q 029271          127 A--NSQILVIRVPLL  139 (196)
Q Consensus       127 ~--~t~~PVIgvP~~  139 (196)
                      +  ..-.|.|.||+.
T Consensus       105 ~~y~rgi~~i~vPTt  119 (347)
T d1ujna_         105 ATYLRGVAYLAFPTT  119 (347)
T ss_dssp             HHBTTCCEEEEEECS
T ss_pred             hhhcCCcceeeccch
Confidence            5  568999999985

>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Sporulation related repeat
family: Sporulation related repeat
domain: Cell division protein FtsN
species: Escherichia coli [TaxId: 562]

Probab=88.03  E-value=0.26  Score=32.48  Aligned_cols=62  Identities=18%  Similarity=0.019  Sum_probs=50.2

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhCCCeE---------EEEEcccCCchHHHHHHHHHhhCCC-eEEEEecC
Q 029271           54 IVGIIMESDLDLPVMNDAARTLSDFGVPYE---------IKILPPHQNCKEALSYALSAKERGI-KIIIVGDG  116 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~~~gi~~e---------v~V~SaHR~p~~~~~~~~~~e~~~~-~V~IavAG  116 (196)
                      +-.|-.||-+|.+-+++....|...|++..         |+| +...+-++..+..++..+.|+ .+|+-.+|
T Consensus         5 ~y~vQvGaF~~~~nA~~l~~~L~~~g~~~~i~~~~~~yRV~v-Gpf~~~~~A~~~~~~L~~~G~~~~i~~~~~   76 (77)
T d1utaa_           5 RWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVI-GPVKGKENADSTLNRLKMAGHTNCIRLAAG   76 (77)
T ss_dssp             BCCCBCCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEE-SSCBTTTHHHHHHHHHHHHCCSCCBCCCCC
T ss_pred             eEEEEEEEecCHHHHHHHHHHHHhcCCcceecCCCcEEEEEE-CCcCCHHHHHHHHHHHHHcCCCCEEEEecC
Confidence            455778999999999999999999999743         343 577888999999999998888 56666555

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=5  Score=30.32  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCH---HHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--c
Q 029271           54 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N  128 (196)
Q Consensus        54 ~V~IimGS~SD~---~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--~  128 (196)
                      +|++++-...|-   ...+.+.+.+++.|+.+  -+. .+..+++-.+.++++-.++++-||...-....+..++.-  .
T Consensus         3 kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~~--i~~-~~~d~~~q~~~i~~li~~~vDgiIi~~~~~~~~~~~~~~a~~   79 (305)
T d8abpa_           3 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--IKI-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG   79 (305)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEE--EEE-ECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEE--EEE-cCCCHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHh
Confidence            688888887774   34556677788899754  333 345778888888999899998777666666677777743  5


Q ss_pred             cCCcEEEe
Q 029271          129 SQILVIRV  136 (196)
Q Consensus       129 t~~PVIgv  136 (196)
                      ...|||.+
T Consensus        80 ~giPVV~~   87 (305)
T d8abpa_          80 YDMKVIAV   87 (305)
T ss_dssp             TTCEEEEE
T ss_pred             cCCCEEEE
Confidence            78899987

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.39  E-value=0.98  Score=31.64  Aligned_cols=74  Identities=14%  Similarity=0.023  Sum_probs=47.9

Q ss_pred             CeEEEEEcCC---CCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhcc
Q 029271           53 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS  129 (196)
Q Consensus        53 ~~V~IimGS~---SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t  129 (196)
                      ..|+|.|=++   +.=|+|.++++.|+++|++|+..=..-+   .+..+.+.+                      ..+..
T Consensus        15 ~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~---~~~~~~l~~----------------------~t~~~   69 (109)
T d1wika_          15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED---EEVRQGLKT----------------------FSNWP   69 (109)
T ss_dssp             SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSC---HHHHHHHHH----------------------HHSCC
T ss_pred             CCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEeccc---HHHHHHHHH----------------------hcCCC
Confidence            4688888655   3367889999999999999986544332   233333332                      23456


Q ss_pred             CCcEEEecCCCCCCChhh-hhhhhc
Q 029271          130 QILVIRVPLLSEDWSEDD-VINSIR  153 (196)
Q Consensus       130 ~~PVIgvP~~~~~~~G~D-LlS~lq  153 (196)
                      +.|.|=  +.+...+|.| |..+.+
T Consensus        70 TvPqIF--i~g~~IGG~ddl~~l~~   92 (109)
T d1wika_          70 TYPQLY--VRGDLVGGLDIVKELKD   92 (109)
T ss_dssp             SSCEEE--CSSSEEECHHHHHHHHH
T ss_pred             CCCeEE--ECCEEEcCHHHHHHHHH
Confidence            788876  3444557777 666554

>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Galactose/glucose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=85.31  E-value=5.1  Score=29.84  Aligned_cols=83  Identities=10%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCHHHHHHHHHHHH----HhCCCeEEEEEcccCCchHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhh--
Q 029271           54 IVGIIMESDLDLPVMNDAARTLS----DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--  127 (196)
Q Consensus        54 ~V~IimGS~SD~~~~~~~~~~l~----~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~--  127 (196)
                      ||+|++...+| ++...+.+.++    +. -.+++-+......+++..+.++++-+++++.+|...-....+...+.-  
T Consensus         3 kIgv~~~~~~~-~f~~~i~~gi~~~a~~~-~~~~l~~~~~~~~~~~q~~~i~~li~~~vDgiii~~~~~~~~~~~~~~~~   80 (305)
T d2fvya1           3 RIGVTIYKYDD-NFMSVVRKAIEQDAKAA-PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR   80 (305)
T ss_dssp             EEEEEESCTTS-HHHHHHHHHHHHHHHTC-TTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHH
T ss_pred             EEEEEeCCCCC-HHHHHHHHHHHHHHHHc-CCcEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEeecccccccHHHHHHHH
Confidence            79999988777 55555555544    33 257888888889999999999999889999888776666666665543  


Q ss_pred             ccCCcEEEecC
Q 029271          128 NSQILVIRVPL  138 (196)
Q Consensus       128 ~t~~PVIgvP~  138 (196)
                      ....||+.+..
T Consensus        81 ~~~ipvv~~~~   91 (305)
T d2fvya1          81 GQNVPVVFFNK   91 (305)
T ss_dssp             TTTCCEEEESS
T ss_pred             hcCCceeeeee
Confidence            46688888754

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.63  E-value=2.5  Score=31.17  Aligned_cols=69  Identities=16%  Similarity=0.195  Sum_probs=44.5

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHH----HHHHHHHhhCCCeEEEEecCCCCchhHh
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA----LSYALSAKERGIKIIIVGDGVEAHLSGV  124 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~----~~~~~~~e~~~~~V~IavAG~sa~L~gv  124 (196)
                      +|.|.|+ +|-|-...+-++++.|++.||  .+||.|.|-. +.+    .++..+.-..+..++.+-+|.+.+...+
T Consensus        20 ~pdvtii-AsGsev~~AleAa~~L~~~GI--~v~Vvs~ps~-~~~~~q~~~~~~~~~~~~~~~v~iEa~~~~gw~~~   92 (146)
T d1gpua3          20 NPDIILV-ATGSEVSLSVEAAKTLAAKNI--KARVVSLPDF-FTFDKQPLEYRLSVLPDNVPIMSVEVLATTCWGKY   92 (146)
T ss_dssp             SCSEEEE-ECTHHHHHHHHHHHHHHTTTC--CEEEEECSCH-HHHHHSCHHHHHHHSCSSSCEEEECSSCSTTGGGT
T ss_pred             CCCEEEE-EeCHHHHHHHHHHHHHHhhcc--CccEEEeehh-hHHHhhhHHHhhhhcccccceeeEEeccccchhhc
Confidence            4555444 455799999999999999998  5778887742 222    2344444344556776767766665443

>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: ATP-dependent phosphofructokinase
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=0.36  Score=40.16  Aligned_cols=47  Identities=17%  Similarity=0.146  Sum_probs=34.4

Q ss_pred             chHHHHHHHHHhhCCCeEEEEecCCCCchhHhhhhccCCcEEEecCC
Q 029271           93 CKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL  139 (196)
Q Consensus        93 p~~~~~~~~~~e~~~~~V~IavAG~sa~L~gvvA~~t~~PVIgvP~~  139 (196)
                      .+...++++.+++.+++.+|.+.|-...-....-+....||||+|-.
T Consensus        80 ~~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~l~~~~~~vigiPkT  126 (320)
T d1pfka_          80 ENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPGT  126 (320)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEBC
T ss_pred             hhhhhhHHHHHHHcCCCEEEEeCCchHHHHHHHHHhcccceeeeeee
Confidence            46666788899999999888887764443333335568899999975

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.75  E-value=2.5  Score=32.69  Aligned_cols=27  Identities=19%  Similarity=0.276  Sum_probs=13.3

Q ss_pred             CCchHHHHHHHHHhhC--CCeEEEEecCC
Q 029271           91 QNCKEALSYALSAKER--GIKIIIVGDGV  117 (196)
Q Consensus        91 R~p~~~~~~~~~~e~~--~~~V~IavAG~  117 (196)
                      ..++.+.+++++..++  .++++|-.||.
T Consensus        67 t~~~~v~~~~~~~~~~~g~iDilvnnAg~   95 (240)
T d2bd0a1          67 SDMADVRRLTTHIVERYGHIDCLVNNAGV   95 (240)
T ss_dssp             TSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCcceeeccccc
Confidence            3445555555554332  33566655554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=1.8  Score=33.76  Aligned_cols=50  Identities=12%  Similarity=0.015  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCC
Q 029271           52 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG  107 (196)
Q Consensus        52 ~~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~  107 (196)
                      .++|++|||+++.+-  +++++.|.+-|..    |.-.-|+++++.++.+++++.|
T Consensus         6 ~Gkv~lITGas~GIG--~~ia~~la~~G~~----V~l~~r~~~~l~~~~~~~~~~~   55 (244)
T d1yb1a_           6 TGEIVLITGAGHGIG--RLTAYEFAKLKSK----LVLWDINKHGLEETAAKCKGLG   55 (244)
T ss_dssp             TTCEEEEETTTSHHH--HHHHHHHHHTTCE----EEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHH--HHHHHHHHHCCCE----EEEEECCHHHHHHHHHHHHhcC
Confidence            468889998888654  5555555555542    1113344444444444444433

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=82.05  E-value=2.6  Score=32.82  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhCCCe
Q 029271           53 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK  109 (196)
Q Consensus        53 ~~V~IimGS~SD~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~~~~  109 (196)
                      .+|++|+|+.+-+  ...+++.|-+-|..  +-+  .+|+.+.+.+..+++++.|.+
T Consensus         5 gK~alITGas~GI--G~aia~~la~~Ga~--V~~--~~r~~~~l~~~~~~~~~~g~~   55 (260)
T d1zema1           5 GKVCLVTGAGGNI--GLATALRLAEEGTA--IAL--LDMNREALEKAEASVREKGVE   55 (260)
T ss_dssp             TCEEEEETTTSHH--HHHHHHHHHHTTCE--EEE--EESCHHHHHHHHHHHHTTTSC
T ss_pred             CCEEEEeCCCCHH--HHHHHHHHHHCCCE--EEE--EECCHHHHHHHHHHHHhcCCc
Confidence            5677777777633  44556666666642  222  335555555555544444433

>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Thermus thermophilus [TaxId: 274]

Probab=80.92  E-value=1.1  Score=37.14  Aligned_cols=35  Identities=26%  Similarity=0.174  Sum_probs=27.3

Q ss_pred             HHhhCCCeEEEEecCCCCchhHhhhh-ccCCcEEEe
Q 029271          102 SAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRV  136 (196)
Q Consensus       102 ~~e~~~~~V~IavAG~sa~L~gvvA~-~t~~PVIgv  136 (196)
                      -.++...+++++..-+...|++.+|+ ....||+++
T Consensus        83 ~l~~~kPD~vlv~GDr~e~la~a~aa~~~~ipi~Hi  118 (373)
T d1v4va_          83 ALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHV  118 (373)
T ss_dssp             HHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhhcCcccccccccCccchhHHHHHHHhhhhheee
Confidence            34555668888888998899887755 579999986

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=80.58  E-value=3.4  Score=31.89  Aligned_cols=54  Identities=13%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             CHHHHHHHHHHHHHhCCCeEEEEEcccCCchHHHHHHHHHhhC--CCeEEEEecCCC
Q 029271           64 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGVE  118 (196)
Q Consensus        64 D~~~~~~~~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~~e~~--~~~V~IavAG~s  118 (196)
                      |.+.+++..+.|+++|..+....+-. ..++.+.+++++..++  .++++|-.||..
T Consensus        35 ~~~~l~~~~~~l~~~g~~~~~~~~Dv-s~~~~v~~~~~~~~~~~g~iDilVnnAG~~   90 (257)
T d2rhca1          35 GEEGLRTTLKELREAGVEADGRTCDV-RSVPEIEALVAAVVERYGPVDVLVNNAGRP   90 (257)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCT-TCHHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEeec-CCHHHHHHHHHHHHHHhCCCCEEEeccccc
Confidence            56667777777777777655433322 4667777777776543  358888888864