Citrus Sinensis ID: 029292

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEcccHHHcccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEEEccHHHHHHcccccccccHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
myrdrgggaskseivagpldrKRINDALDKhlektspstsralsskdkerlsvpstsagksqldhrdsrsaslpknkcsdeesetdseesdvsgsdgddtsWISWFCNlrgneffcevddeyiqddfnlcglssqvpyydYALDLILDVesshgdmfTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV
Flexible Loop (DISEMBL)
myrdrgggaskseivagpldrKRINDALdkhlektspstsralsskdkerlsvpstsagksqldhrdsrsaslpknkcsdeesetdseesdvsgsdgdDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV
Low Complexity Region (SEG)
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCsdeesetdseesdvsgsdgddtsWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV
Disordered region (IsUnstruct)
****************************************************************************************************SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMV****
Disordered Region (DISOPRED)
*****************************************************************************************************WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV
Disordered Region (DISEMBL)
**********KSEIVAGPLDRKRINDALDKHL*****************************************************************DDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV
Disordered Region (DISPRO)
****************GPLDRKRINDALDKHLE*****************************************************************DTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
O80507	283	Putative casein kinase II	yes	no	0.917	0.632	0.723	4e-74
P40228	287	Casein kinase II subunit	no	no	0.938	0.637	0.727	4e-71
P40229	282	Casein kinase II subunit	no	no	0.933	0.645	0.670	2e-65
O81275	276	Casein kinase II subunit	no	no	0.830	0.586	0.692	2e-62
P67874	215	Casein kinase II subunit	yes	no	0.502	0.455	0.612	1e-30
P67873	215	Casein kinase II subunit	yes	no	0.502	0.455	0.612	1e-30
P67872	215	Casein kinase II subunit	yes	no	0.502	0.455	0.612	1e-30
P67871	215	Casein kinase II subunit	yes	no	0.502	0.455	0.612	1e-30
P67870	215	Casein kinase II subunit	yes	no	0.502	0.455	0.612	1e-30
P67869	215	Casein kinase II subunit	yes	no	0.502	0.455	0.612	1e-30

>sp|O80507|CSK2E_ARATH Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1

 Score =  276 bits (707), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 161/199 (80%), Gaps = 20/199 (10%)

Query: 1   MYRDRGGGASKS-------EIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSV 53
           MY+DR GG           EI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  SV
Sbjct: 1   MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SV 58

Query: 54  PSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
           PSTS  KSQL  R             D ES+TDSE SDVSGS+GDDTSWISWFCNLRGNE
Sbjct: 59  PSTSTAKSQLHSRSP-----------DVESDTDSEGSDVSGSEGDDTSWISWFCNLRGNE 107

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQ+E+VESAAEMLY
Sbjct: 108 FFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLY 167

Query: 174 GLIHVRYILTSKGMAAMVK 192
           GLIHVRYILT+KGMAAM++
Sbjct: 168 GLIHVRYILTTKGMAAMME 186

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.
Arabidopsis thaliana (taxid: 3702)

>sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1

 Score =  267 bits (682), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 144/198 (72%), Positives = 164/198 (82%), Gaps = 15/198 (7%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
           MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A  
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANL 52

Query: 59  -GKSQ---LDHRDSRSASLPKNK-CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
            GK Q   ++HRDSRSASL KN   SD+ES+TDSEESDVSGSDG+DTSWISWFCNLRGNE
Sbjct: 53  IGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNE 112

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFTEEQNEL+ESAAEMLY
Sbjct: 113 FFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLY 172

Query: 174 GLIHVRYILTSKGMAAMV 191
           GLIH RYILTSKG+AAM+
Sbjct: 173 GLIHARYILTSKGLAAML 190

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P40229|CSK2C_ARATH Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 150/194 (77%), Gaps = 12/194 (6%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RG   SKSE+V    DRKRIN+  D       PS S +     K +++  S   GK
Sbjct: 1   MYRERGMVGSKSEVV----DRKRINEIHDNR-----PSHSMSQPVNGKGKVTSTSVLMGK 51

Query: 61  SQL-DHRDSRSASLPKNKCSD--EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCE 117
            QL D   SRS S+ K   SD  + S+TDSEES+VSGSDG+DTSWISWFCNLRGNEFFCE
Sbjct: 52  QQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCE 111

Query: 118 VDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIH 177
           VDD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+IH
Sbjct: 112 VDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIH 171

Query: 178 VRYILTSKGMAAMV 191
            R+ILTSKG+A+M+
Sbjct: 172 ARFILTSKGLASML 185

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Arabidopsis thaliana (taxid: 3702)

>sp|O81275|CSK2D_ARATH Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/182 (69%), Positives = 146/182 (80%), Gaps = 20/182 (10%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTS--RALSSKDKERLSVPSTSAGKSQLDHRDSRS 70
           EI+ G +DRKRINDAL+K LEK+S ST+  R  SSKDK+  S  ST   K+QL       
Sbjct: 17  EILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFTST---KTQL------- 66

Query: 71  ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLC 130
                    D ESETDSE SDVSGS+GDDTSWISWFCNLRGN+FFCEVD++YIQDDFNLC
Sbjct: 67  --------PDVESETDSEGSDVSGSEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLC 118

Query: 131 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAM 190
           GLS QVPYYDYALDLILDV++S+ +MFT+EQ+E+VESAAEMLYGLIHVRYILT+KGMAAM
Sbjct: 119 GLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAM 178

Query: 191 VK 192
            +
Sbjct: 179 TE 180

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
                 Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Rattus norvegicus (taxid: 10116)

>sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
                 Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Oryctolagus cuniculus (taxid: 9986)

>sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
                 Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Sus scrofa (taxid: 9823)

>sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
                 Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Participates in Wnt signaling.

Mus musculus (taxid: 10090)

>sp|P67870|CSK2B_HUMAN Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
                 Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

Participates in Wnt signaling (By similarity). Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Homo sapiens (taxid: 9606)

>sp|P67869|CSK2B_CHICK Casein kinase II subunit beta OS=Gallus gallus GN=CSNK2B PE=2 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
                 Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
225453309	288	PREDICTED: putative casein kinase II sub	0.984	0.666	0.942	8e-95
21261784	280	protein kinase Ck2 regulatory subunit 2	0.943	0.657	0.875	7e-90
147801660	282	hypothetical protein VITISV_022015 [Viti	0.953	0.659	0.911	7e-89
255571069	338	casein kinase II beta chain, putative [R	0.943	0.544	0.885	2e-84
433802366	200	casein kinase beta chain [Cocos nucifera	0.958	0.935	0.894	4e-84
449442327	295	PREDICTED: putative casein kinase II sub	0.969	0.640	0.87	1e-82
224137102	300	predicted protein [Populus trichocarpa]	0.923	0.6	0.888	6e-80
224063639	301	predicted protein [Populus trichocarpa]	0.923	0.598	0.873	2e-79
118489558	330	unknown [Populus trichocarpa x Populus d	0.923	0.545	0.873	3e-79
359474437	276	PREDICTED: casein kinase II subunit beta	0.923	0.652	0.732	1e-73

>gi|225453309|ref|XP_002269020.1| PREDICTED: putative casein kinase II subunit beta-4 isoform 1 [Vitis vinifera] gi|297734650|emb|CBI16701.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 181/192 (94%), Positives = 190/192 (98%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTS+ LSSKDKERLSVPSTSAGK
Sbjct: 1   MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKGLSSKDKERLSVPSTSAGK 60

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           SQLDHRD+R+ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD
Sbjct: 61  SQLDHRDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY
Sbjct: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180

Query: 181 ILTSKGMAAMVK 192
           ILTSKGM+AM++
Sbjct: 181 ILTSKGMSAMLE 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21261784|emb|CAD32500.1| protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]

 Score =  335 bits (858), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 168/192 (87%), Positives = 176/192 (91%), Gaps = 8/192 (4%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYRDRGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTSRA   KDK   +VPSTSAGK
Sbjct: 1   MYRDRGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSRAF--KDK---AVPSTSAGK 55

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           S   H D R+    KNKCSD+ESETDSEESDVSGSDG+DTSWISWFCNLRGNEFFCEVDD
Sbjct: 56  SHQHHPDHRAT---KNKCSDDESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDD 112

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY
Sbjct: 113 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 172

Query: 181 ILTSKGMAAMVK 192
           ILTSKGMAAM++
Sbjct: 173 ILTSKGMAAMLE 184

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801660|emb|CAN72327.1| hypothetical protein VITISV_022015 [Vitis vinifera]

 Score =  331 bits (849), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 175/192 (91%), Positives = 184/192 (95%), Gaps = 6/192 (3%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTS+ LSSKDKERLSVPSTSAGK
Sbjct: 1   MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKGLSSKDKERLSVPSTSAGK 60

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           SQLDHRD+R+ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD
Sbjct: 61  SQLDHRDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSH      EQNELVESAAEMLYGLIHVRY
Sbjct: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSH------EQNELVESAAEMLYGLIHVRY 174

Query: 181 ILTSKGMAAMVK 192
           ILTSKGM+AM++
Sbjct: 175 ILTSKGMSAMLE 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571069|ref|XP_002526485.1| casein kinase II beta chain, putative [Ricinus communis] gi|223534160|gb|EEF35876.1| casein kinase II beta chain, putative [Ricinus communis]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/192 (88%), Positives = 179/192 (93%), Gaps = 8/192 (4%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MY+DRGGG+S+SE     +DRKRINDALDKHLEK SPSTSR L+SKDKERLSVPSTS GK
Sbjct: 1   MYKDRGGGSSRSE-----MDRKRINDALDKHLEKLSPSTSRTLNSKDKERLSVPSTSTGK 55

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           SQ DHR   SAS+ KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD
Sbjct: 56  SQFDHR---SASISKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 112

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY
Sbjct: 113 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 172

Query: 181 ILTSKGMAAMVK 192
           ILTSKGM+AM++
Sbjct: 173 ILTSKGMSAMLE 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|433802366|gb|AGB51444.1| casein kinase beta chain [Cocos nucifera]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 169/189 (89%), Positives = 175/189 (92%), Gaps = 2/189 (1%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYRDRG   SKSEI  GPLDRKRINDALDKHLEK+SPSTSR L+ ++KERLSV STSAGK
Sbjct: 1   MYRDRGARGSKSEI--GPLDRKRINDALDKHLEKSSPSTSRGLNGREKERLSVLSTSAGK 58

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
               HRD RSASL KNKCSDEESETDSEESDVSGSDG+DTSWISWFCNLRGNEFFCEVDD
Sbjct: 59  QPDHHRDQRSASLSKNKCSDEESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDD 118

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNEL+ESAAEMLYGLIHVRY
Sbjct: 119 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHVRY 178

Query: 181 ILTSKGMAA 189
           ILTSKGMAA
Sbjct: 179 ILTSKGMAA 187

Source: Cocos nucifera

Species: Cocos nucifera

Genus: Cocos

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442327|ref|XP_004138933.1| PREDICTED: putative casein kinase II subunit beta-4-like [Cucumis sativus] gi|449505605|ref|XP_004162519.1| PREDICTED: putative casein kinase II subunit beta-4-like [Cucumis sativus]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 174/200 (87%), Positives = 180/200 (90%), Gaps = 11/200 (5%)

Query: 1   MYRDRGGG--------ASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLS 52
           MYRDRGGG        +SKSEIV   LDRKRINDALDKHLEKTSPSTSR L SK+KERLS
Sbjct: 1   MYRDRGGGGGGGGIGGSSKSEIVGATLDRKRINDALDKHLEKTSPSTSRGLHSKEKERLS 60

Query: 53  VPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN 112
           VPSTS GK QLDHR   SASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN
Sbjct: 61  VPSTSTGKPQLDHR---SASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN 117

Query: 113 EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML 172
           EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML
Sbjct: 118 EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML 177

Query: 173 YGLIHVRYILTSKGMAAMVK 192
           YGLIHVRYILT KG++AM++
Sbjct: 178 YGLIHVRYILTGKGISAMLE 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137102|ref|XP_002327022.1| predicted protein [Populus trichocarpa] gi|222835337|gb|EEE73772.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (772), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 168/189 (88%), Positives = 173/189 (91%), Gaps = 9/189 (4%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKS-----QLDH 65
           EIV G LDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS      L+H
Sbjct: 16  EIVGGQLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSSQHQQHLEH 75

Query: 66  R--DSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI 123
              DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI
Sbjct: 76  HRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI 135

Query: 124 QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT 183
           QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT
Sbjct: 136 QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT 195

Query: 184 SKGMAAMVK 192
           SKGM+AM++
Sbjct: 196 SKGMSAMLE 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063639|ref|XP_002301241.1| predicted protein [Populus trichocarpa] gi|222842967|gb|EEE80514.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/190 (87%), Positives = 171/190 (90%), Gaps = 10/190 (5%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKSQLD------ 64
           +IV GPLDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS         
Sbjct: 16  DIVGGPLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSLQHHQQQLD 75

Query: 65  --HRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 122
               DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY
Sbjct: 76  HHRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 135

Query: 123 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 182
           IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL
Sbjct: 136 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 195

Query: 183 TSKGMAAMVK 192
           TSKGM+AM++
Sbjct: 196 TSKGMSAMLE 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489558|gb|ABK96581.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/190 (87%), Positives = 171/190 (90%), Gaps = 10/190 (5%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKSQLD------ 64
           +IV GPLDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS         
Sbjct: 16  DIVGGPLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSLQHHQQQLD 75

Query: 65  --HRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 122
               DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY
Sbjct: 76  HHRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 135

Query: 123 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 182
           IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL
Sbjct: 136 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 195

Query: 183 TSKGMAAMVK 192
           TSKGM+AM++
Sbjct: 196 TSKGMSAMLE 205

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474437|ref|XP_003631465.1| PREDICTED: casein kinase II subunit beta-like isoform 2 [Vitis vinifera]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 140/191 (73%), Positives = 157/191 (82%), Gaps = 11/191 (5%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RG  A+ S+     +DRKRINDALDKHLE++SPSTS+ L+ KDK+R+S  ST  GK
Sbjct: 1   MYRERGVAAAGSKAEMASIDRKRINDALDKHLERSSPSTSKGLNGKDKDRVSAQSTLIGK 60

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
               H DS             ESETD+EESDVSGSDGDD SWISWFC++RG+EFFCEVDD
Sbjct: 61  PPPHHNDSLI-----------ESETDTEESDVSGSDGDDASWISWFCHMRGHEFFCEVDD 109

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           +YIQDDFNLCGLSSQVPYYDYALDLILDVESSHGD FTEEQNELVESAAEMLYGLIHVRY
Sbjct: 110 DYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDSFTEEQNELVESAAEMLYGLIHVRY 169

Query: 181 ILTSKGMAAMV 191
           ILTSKG+AAM+
Sbjct: 170 ILTSKGLAAML 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2042431	283	CKB4 "casein kinase II beta su	0.917	0.632	0.663	6.2e-62
TAIR|locus:2152002	287	CKB1 "casein kinase II beta ch	0.953	0.648	0.618	1.2e-56
TAIR|locus:2129316	282	CKB2 "casein kinase II beta ch	0.938	0.648	0.585	1.9e-51
TAIR|locus:2081937	276	CKB3 "casein kinase II beta ch	0.902	0.637	0.566	1.1e-50
UNIPROTKB|Q5SRQ6	234	CSNK2B "Casein kinase II subun	0.594	0.495	0.517	7.1e-29
UNIPROTKB|P67869	215	CSNK2B "Casein kinase II subun	0.466	0.423	0.637	1.2e-28
UNIPROTKB|P67868	215	CSNK2B "Casein kinase II subun	0.466	0.423	0.637	1.2e-28
UNIPROTKB|E2RP71	295	E2RP71 "Uncharacterized protei	0.466	0.308	0.637	1.2e-28
UNIPROTKB|P67870	215	CSNK2B "Casein kinase II subun	0.466	0.423	0.637	1.2e-28
UNIPROTKB|Q5SRQ3	228	CSNK2B "Casein kinase II subun	0.466	0.399	0.637	1.2e-28

TAIR|locus:2042431 CKB4 "casein kinase II beta subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 132/199 (66%), Positives = 151/199 (75%)

Query:     1 MYRDR-------GGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSV 53
             MY+DR       GGG+S+SEI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  SV
Sbjct:     1 MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SV 58

Query:    54 PSTSAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNE 113
             PSTS  KSQL H  SRS  +  +                         WISWFCNLRGNE
Sbjct:    59 PSTSTAKSQL-H--SRSPDVESD--------TDSEGSDVSGSEGDDTSWISWFCNLRGNE 107

Query:   114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
             FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQ+E+VESAAEMLY
Sbjct:   108 FFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLY 167

Query:   174 GLIHVRYILTSKGMAAMVK 192
             GLIHVRYILT+KGMAAM++
Sbjct:   168 GLIHVRYILTTKGMAAMME 186

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2152002 CKB1 "casein kinase II beta chain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 125/202 (61%), Positives = 144/202 (71%)

Query:     1 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
             MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A  
Sbjct:     1 MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANL 52

Query:    59 -GKSQ---LDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXX-XXWISWFCNLRGNE 113
              GK Q   ++HRDSRSASL KN                          WISWFCNLRGNE
Sbjct:    53 IGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNE 112

Query:   114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
             FFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFTEEQNEL+ESAAEMLY
Sbjct:   113 FFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLY 172

Query:   174 GLIHVRYILTSKGMAAMV-KFR 194
             GLIH RYILTSKG+AAM+ K++
Sbjct:   173 GLIHARYILTSKGLAAMLDKYK 194

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IGI;IDA

GO:0071900 "regulation of protein serine/threonine kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2129316 CKB2 "casein kinase II beta chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 117/200 (58%), Positives = 135/200 (67%)

Query:     1 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
             MYR+RG   SKSE+V    DRKRIN+    H  + S S S+ ++ K K    V STS   
Sbjct:     1 MYRERGMVGSKSEVV----DRKRINEI---HDNRPSHSMSQPVNGKGK----VTSTSVLM 49

Query:    59 GKSQL-DHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXX--XXWISWFCNLRGNEFF 115
             GK QL D   SRS S+ K                            WISWFCNLRGNEFF
Sbjct:    50 GKQQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFF 109

Query:   116 CEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 175
             CEVDD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+
Sbjct:   110 CEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGM 169

Query:   176 IHVRYILTSKGMAAMV-KFR 194
             IH R+ILTSKG+A+M+ K++
Sbjct:   170 IHARFILTSKGLASMLDKYK 189

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISS

TAIR|locus:2081937 CKB3 "casein kinase II beta chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 111/196 (56%), Positives = 138/196 (70%)

Query:     1 MYRDR----GGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPST 56
             MY++R    GGG+S+SEI+ G +DRKRINDAL+K LEK+S ST+ +     K++     T
Sbjct:     1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFT 60

Query:    57 SAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFC 116
             S  K+QL   +S + S                             WISWFCNLRGN+FFC
Sbjct:    61 ST-KTQLPDVESETDS---------------EGSDVSGSEGDDTSWISWFCNLRGNDFFC 104

Query:   117 EVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI 176
             EVD++YIQDDFNLCGLS QVPYYDYALDLILDV++S+ +MFT+EQ+E+VESAAEMLYGLI
Sbjct:   105 EVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLI 164

Query:   177 HVRYILTSKGMAAMVK 192
             HVRYILT+KGMAAM +
Sbjct:   165 HVRYILTTKGMAAMTE 180

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008134 "transcription factor binding" evidence=IDA

UNIPROTKB|Q5SRQ6 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 60/116 (51%), Positives = 74/116 (63%)

Query:    77 KCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQV 136
             KC                       WISWFC LRGNEFFCEVD++YIQD FNL GL+ QV
Sbjct:     3 KCKGTSRMAGTTSADVKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQV 62

Query:   137 PYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
             P+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct:    63 PHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 118

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|P67869 CSNK2B "Casein kinase II subunit beta" [Gallus gallus (taxid:9031)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 58/91 (63%), Positives = 72/91 (79%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
             ++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISS

UNIPROTKB|P67868 CSNK2B "Casein kinase II subunit beta" [Bos taurus (taxid:9913)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 58/91 (63%), Positives = 72/91 (79%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
             ++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

GO:0031519 "PcG protein complex" evidence=ISS

GO:0061154 "endothelial tube morphogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|E2RP71 E2RP71 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 58/91 (63%), Positives = 72/91 (79%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
             ++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|P67870 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 58/91 (63%), Positives = 72/91 (79%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
             ++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0005956 "protein kinase CK2 complex" evidence=NAS

GO:0019887 "protein kinase regulator activity" evidence=NAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0031519 "PcG protein complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0004674 "protein serine/threonine kinase activity" evidence=TAS

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IMP

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IDA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043623 "cellular protein complex assembly" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0051101 "regulation of DNA binding" evidence=NAS

GO:0061154 "endothelial tube morphogenesis" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=NAS

UNIPROTKB|Q5SRQ3 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 58/91 (63%), Positives = 72/91 (79%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
             ++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80507	CSK2E_ARATH	No assigned EC number	0.7236	0.9179	0.6325	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019032001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (288 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
smart01085	184	smart01085, CK_II_beta, Casein kinase II regulator	3e-55
pfam01214	183	pfam01214, CK_II_beta, Casein kinase II regulatory	1e-51
PTZ00396	251	PTZ00396, PTZ00396, Casein kinase II subunit beta;	5e-47
COG5041	242	COG5041, SKB2, Casein kinase II, beta subunit [Sig	8e-35

>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit

 Score =  173 bits (440), Expect = 3e-55
 Identities = 57/95 (60%), Positives = 74/95 (77%), Gaps = 1/95 (1%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWI WFC+L+GNEFFCEVD+++I+DDFNL GL+S+VP Y  ALDLILD+E          
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDLDEDAS 60

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMV-KFR 194
           Q  L+ES+AE+LYGLIH RYILT +G+A M+ K++
Sbjct: 61  QKSLIESSAELLYGLIHARYILTPRGLALMLEKYK 95

Length = 184

>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit

 Score =  163 bits (416), Expect = 1e-51
 Identities = 57/95 (60%), Positives = 71/95 (74%), Gaps = 2/95 (2%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWI WFC+L+GNEFFCEVD++YI+DDFNL GLS +VP Y  ALDLILD E    +   ++
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDYIEDDFNLYGLSEEVPNYKEALDLILDKEPES-ESLDDD 59

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMV-KFR 194
           + E +E  AE LYGLIH RYILT KG+A M  K++
Sbjct: 60  KKEEIEKEAEKLYGLIHARYILTPKGLAQMKEKYK 94

Length = 183

>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional

 Score =  154 bits (391), Expect = 5e-47
 Identities = 54/113 (47%), Positives = 72/113 (63%), Gaps = 6/113 (5%)

Query: 78  CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVP 137
            SDEES    E S+      +   WI WFC+L+G+EF CEVD+++I+D+FNL GL S+ P
Sbjct: 5   FSDEESSYSEEPSE------ESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFP 58

Query: 138 YYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAM 190
           +Y+ ALD+ILD E    +   +EQ   V   A  LYGLIH R+I T KG+A M
Sbjct: 59  FYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLIHARFITTPKGLALM 111

Length = 251

>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

 Score =  122 bits (308), Expect = 8e-35
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 79  SDEESETDSEE-SDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVP 137
            +   E DS+  SD      +   WI WFC+ +GNE+FCEV +E+I+D FNL GLS +VP
Sbjct: 2   MENSLEDDSDNLSDDDSDSSEYDEWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVP 61

Query: 138 YYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAM 190
           +Y   LDLILD  +        ++ +++E +A  LYGLIH RYI+T  G+ AM
Sbjct: 62  HYSEVLDLILDKLAP--SNLENDEVDIIEESARQLYGLIHARYIITKSGLQAM 112

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG3092	216	consensus Casein kinase II, beta subunit [Signal t	100.0
PTZ00396	251	Casein kinase II subunit beta; Provisional	100.0
PF01214	184	CK_II_beta: Casein kinase II regulatory subunit; I	100.0
COG5041	242	SKB2 Casein kinase II, beta subunit [Signal transd	100.0

>KOG3092 consensus Casein kinase II, beta subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.7e-44  Score=304.51  Aligned_cols=99  Identities=67%  Similarity=1.103  Sum_probs=92.9

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhh
Q 029292           96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  175 (195)
Q Consensus        96 ~~ed~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGL  175 (195)
                      ++++.+||.|||+++||||||+||+|||+|+|||+||+.+||||++||++|||++++++...++++.+.||.+|++||||
T Consensus         3 ~see~sWI~wFc~~~GnEffceVdeeyIqD~FNltgL~~~Vp~y~~ald~ILD~~~~~~~e~~~~~~~~iE~aae~LYGL   82 (216)
T KOG3092|consen    3 SSEEVSWISWFCGLRGNEFFCEVDEEYIQDRFNLTGLSEQVPNYRQALDLILDLEPDDELEDNAEQSELIESAAEMLYGL   82 (216)
T ss_pred             cccccchHHHHhcCCCCeeeEecCHHHhhhhhccccccccCchHHHHHHHhhcCCCCcccccchhHHHHHHHHHHHHHHh
Confidence            44566799999999999999999999999999999999999999999999999999887777777779999999999999


Q ss_pred             hhhhhhcCHHHHHHHHhhc
Q 029292          176 IHVRYILTSKGMAAMVKFR  194 (195)
Q Consensus       176 IHARYIlT~~GL~~M~E~~  194 (195)
                      ||||||+|.+||++|+||+
T Consensus        83 IHaRYIlT~~Gl~~M~eKy  101 (216)
T KOG3092|consen   83 IHARYILTNRGLAAMLEKY  101 (216)
T ss_pred             hhheeeechHHHHHHHHHH
Confidence            9999999999999999986

>PTZ00396 Casein kinase II subunit beta; Provisional

Probab=100.00  E-value=3.7e-41  Score=293.75  Aligned_cols=98  Identities=48%  Similarity=0.917  Sum_probs=90.3

Q ss_pred             CCCCchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhh
Q 029292           97 GDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI  176 (195)
Q Consensus        97 ~ed~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLI  176 (195)
                      .++.+||+|||+++||+|||+||++||+|+||||||+.+||||++||++|||.+++++...+++....++.+|++|||||
T Consensus        18 ~~~~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLI   97 (251)
T PTZ00396         18 EESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLI   97 (251)
T ss_pred             CCcCcHHHHHhCCCCCeeEEEeCHHHhcCcchhhCccccccCHHHHHHHHcCCCCCccccccchhHHHHHHHHHHHHHHH
Confidence            45668999999999999999999999999999999999999999999999999877654444566788999999999999


Q ss_pred             hhhhhcCHHHHHHHHhhc
Q 029292          177 HVRYILTSKGMAAMVKFR  194 (195)
Q Consensus       177 HARYIlT~~GL~~M~E~~  194 (195)
                      |||||+|++||++|++||
T Consensus        98 HARyI~T~~Gl~~M~eKY  115 (251)
T PTZ00396         98 HARFITTPKGLALMREKY  115 (251)
T ss_pred             hHhHhcCHHHHHHHHHHh
Confidence            999999999999999997

>PF01214 CK_II_beta: Casein kinase II regulatory subunit; InterPro: IPR000704 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=1.6e-40  Score=277.87  Aligned_cols=94  Identities=60%  Similarity=1.095  Sum_probs=79.5

Q ss_pred             chHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhhhhhh
Q 029292          101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY  180 (195)
Q Consensus       101 sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLIHARY  180 (195)
                      +||+|||+++||+|||+||+|||+|+|||+||+.+||+|++||++|||.++++++..++...+.++++|++|||||||||
T Consensus         1 sWI~~F~~~~~~~~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaRy   80 (184)
T PF01214_consen    1 SWIDWFCSLKGNEFFCEVDEDYIEDSFNLYGLSSQVPNYDEALDMILDKEPDEDEESDDESDDEIEKSAEMLYGLIHARY   80 (184)
T ss_dssp             -HHHHHHHSTTTTT-----HHHHHSGGGGTTGGGTSTTHHHHHHHHTT----TTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhCCCCCeEEEEeCHHHHhCcchhcChhhccccHHHHHHHHcCCCcccchhccchhHHHHHHHHHHHHhhhHHHH
Confidence            69999999999999999999999999999999999999999999999998876555556678899999999999999999


Q ss_pred             hcCHHHHHHHHhhc
Q 029292          181 ILTSKGMAAMVKFR  194 (195)
Q Consensus       181 IlT~~GL~~M~E~~  194 (195)
                      |+|++||++|++|+
T Consensus        81 I~T~~Gl~~m~eKy   94 (184)
T PF01214_consen   81 ILTPRGLEQMKEKY   94 (184)
T ss_dssp             TTSHHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHhh
Confidence            99999999999986

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Casein kinase, a ubiquitous, well-conserved protein kinase involved in cell metabolism and differentiation, is characterised by its preference for Ser or Thr in acidic stretches of amino acids. The enzyme is a tetramer of 2 alpha- and 2 beta-subunits [, ]. However, some species (e.g., mammals) possess 2 related forms of the alpha-subunit (alpha and alpha'), while others (e.g., fungi) possess 2 related beta-subunits (beta and beta') []. The alpha-subunit is the catalytic unit and contains regions characteristic of serine/threonine protein kinases. The beta-subunit is believed to be regulatory, possessing an N-terminal auto-phosphorylation site, an internal acidic domain, and a potential metal-binding motif []. The beta subunit is a highly conserved protein of about 25kDa that contains, in its central section, a cysteine-rich motif, CX(n)C, that could be involved in binding a metal such as zinc []. The mammalian beta-subunit gene promoter shares common features with those of other mammalian protein kinases and is closely related to the promoter of the regulatory subunit of cAMP-dependent protein kinase [].; GO: 0019887 protein kinase regulator activity, 0005956 protein kinase CK2 complex; PDB: 2R6M_B 1RQF_K 1DS5_G 1QF8_B 3EED_A 4DGL_A 1JWH_D.

>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

Probab=100.00  E-value=2e-37  Score=265.74  Aligned_cols=92  Identities=49%  Similarity=0.978  Sum_probs=84.3

Q ss_pred             chHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhhhhhh
Q 029292          101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY  180 (195)
Q Consensus       101 sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLIHARY  180 (195)
                      .||+|||+++||+|||+||++||+|.|||+||+..||+|.+||++|||...+.  .+.+.+-+.||.+|+.|||||||||
T Consensus        25 ~Wi~~F~~rkg~eyfc~V~~efIeDrFNltgL~~~Vp~y~~~ldlILD~~~~~--~~e~~~~d~iE~sa~~LYgLIHaRy  102 (242)
T COG5041          25 EWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPS--NLENDEVDIIEESARQLYGLIHARY  102 (242)
T ss_pred             HHHHHHHcCCCCeeeeeCCHHHHHhhhhccchhhccchHHHHHHHHHhccCCc--chhhhhhHHHHHHHHHHHHHHHhhh
Confidence            79999999999999999999999999999999999999999999999987553  2333345789999999999999999


Q ss_pred             hcCHHHHHHHHhhc
Q 029292          181 ILTSKGMAAMVKFR  194 (195)
Q Consensus       181 IlT~~GL~~M~E~~  194 (195)
                      |+|..||++|+||+
T Consensus       103 IiT~~GL~~m~eKy  116 (242)
T COG5041         103 IITKSGLQAMLEKY  116 (242)
T ss_pred             eeeHHHHHHHHHHH
Confidence            99999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
1jwh_C	215	Crystal Structure Of Human Protein Kinase Ck2 Holoe		1e-30
1rqf_A	184	Structure Of Ck2 Beta Subunit Crystallized In The P		2e-30
3eed_A	193	Crystal Structure Of Human Protein Kinase Ck2 Regul		2e-30
1qf8_A	182	Truncated Form Of Casein Kinase Ii Beta Subunit (2-		1e-28

>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 215

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 72/91 (79%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
           ++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence Of A P21waf1 Peptide Length = 184

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 72/91 (79%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 15  WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 74
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
           ++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 75  SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 105

>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory Subunit (Ck2beta; Mutant 1-193) Length = 193

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 72/91 (79%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
           ++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182) From Homo Sapiens Length = 182

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 69/91 (75%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
           ++L+E AAE LYGLIH RYILT++G+A  ++
Sbjct: 69  SDLIEQAAEXLYGLIHARYILTNRGIAQXLE 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	1e-49
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	2e-49

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215

 Score =  159 bits (403), Expect = 1e-49
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
                 Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182

 Score =  157 bits (399), Expect = 2e-49
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
                 Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	100.0
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	100.0

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A

Probab=100.00  E-value=6.6e-44  Score=297.50  Aligned_cols=99  Identities=60%  Similarity=1.062  Sum_probs=85.3

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhh
Q 029292           96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  175 (195)
Q Consensus        96 ~~ed~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGL  175 (195)
                      ++++.+||+|||+++||+|||+||+|||+|+|||+||+.+||||++||++|||.+++++...+.++.+.++++|++||||
T Consensus         3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL   82 (182)
T 1qf8_A            3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL   82 (182)
T ss_dssp             ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred             CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence            44667899999999999999999999999999999999999999999999999987665444455678899999999999


Q ss_pred             hhhhhhcCHHHHHHHHhhc
Q 029292          176 IHVRYILTSKGMAAMVKFR  194 (195)
Q Consensus       176 IHARYIlT~~GL~~M~E~~  194 (195)
                      ||||||+|++||++|++||
T Consensus        83 IHaRyIlT~~Gl~~M~eKy  101 (182)
T 1qf8_A           83 IHARYILTNRGIAQMLEKY  101 (182)
T ss_dssp             HHHHHTTSHHHHHHHHHHH
T ss_pred             hhhhhcccHHHHHHHHHhh
Confidence            9999999999999999986

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*

Probab=100.00  E-value=7.7e-44  Score=303.71  Aligned_cols=99  Identities=60%  Similarity=1.062  Sum_probs=82.7

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhh
Q 029292           96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  175 (195)
Q Consensus        96 ~~ed~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGL  175 (195)
                      ++++.+||+|||+++||+|||+||+|||+|+|||+||+.+||+|++||++|||.+++++...+..+.+.|+++|++||||
T Consensus         3 ~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYGL   82 (215)
T 4dgl_A            3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL   82 (215)
T ss_dssp             -----CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHHH
T ss_pred             CcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhhh
Confidence            44667999999999999999999999999999999999999999999999999987654444455677899999999999


Q ss_pred             hhhhhhcCHHHHHHHHhhc
Q 029292          176 IHVRYILTSKGMAAMVKFR  194 (195)
Q Consensus       176 IHARYIlT~~GL~~M~E~~  194 (195)
                      ||||||+|++||++|+|||
T Consensus        83 IHARYIlT~~Gl~~M~eKY  101 (215)
T 4dgl_A           83 IHARYILTNRGIAQMLEKY  101 (215)
T ss_dssp             HHHHHTTSHHHHHHHHHHH
T ss_pred             hhHhheecHHHHHHHHHHH
Confidence            9999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1qf8a_	173	g.41.4.1 (A:) Casein kinase II beta subunit {Human	6e-48

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 6e-48
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          
Sbjct: 2   SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN 61

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMVK 192
           Q++L+E AAEMLYGLIH RYILT++G+A M++
Sbjct: 62  QSDLIEQAAEMLYGLIHARYILTNRGIAQMLE 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1qf8a_	173	Casein kinase II beta subunit {Human (Homo sapiens	100.0

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-42  Score=282.78  Aligned_cols=95  Identities=62%  Similarity=1.084  Sum_probs=84.6

Q ss_pred             CchHHHHhCCCCCeeEEecCcchhccCCccCCCCCCCCCHHHHHHHHhCCCCCCCCCCchHhHHHHHHHHHHHHhhhhhh
Q 029292          100 TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVR  179 (195)
Q Consensus       100 ~sWI~WFcsl~gNeffceVDedYI~D~FNL~GL~~~Vp~Y~eALd~ILD~e~~~ed~~~d~~~e~Ie~~A~~LYGLIHAR  179 (195)
                      .|||+|||+++||+|||+||+|||+|+||||||+++||||++||++|||.+++++...+..+.+.++++|+.||||||||
T Consensus         1 ~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaR   80 (173)
T d1qf8a_           1 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHAR   80 (173)
T ss_dssp             CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhCCCCCeEEEEeCHHHHcCcchhcCchhccccHHHHHHHHhccCCChhhhhhhhhhHHHHHHHHHHHHHhhhh
Confidence            48999999999999999999999999999999999999999999999999877654444456678999999999999999


Q ss_pred             hhcCHHHHHHHHhhc
Q 029292          180 YILTSKGMAAMVKFR  194 (195)
Q Consensus       180 YIlT~~GL~~M~E~~  194 (195)
                      ||+|++||++|+|||
T Consensus        81 yI~T~~Gl~~m~eKy   95 (173)
T d1qf8a_          81 YILTNRGIAQMLEKY   95 (173)
T ss_dssp             HTTSHHHHHHHHHHH
T ss_pred             eeecHhHHHHHHHHH
Confidence            999999999999987