Citrus Sinensis ID: 029330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MTTSFIVEQAPKSSILALSSDSESCKDSSLLREEKEFQFQGKEMDEDAALTGRDEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTVVL
Secondary Structure (PSIPRED)
ccHHHHHHcccccccEEccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEccccccEEEEEEEcccccccccccccEEEEEEccccccccEEEEEEcccEEEEEEEccccEEEEEEccccEEEEEEcccHHHHccccccEEEEEcccEEEEEEccEEEEEEEEEEEccEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEccccEEcccccccEEEEEEcccccccccEEEEccEEEEEEEEEcccEEEEEEccccccEEEEcccHHHHHHHHccEEEEEccccEEEEEEcEEEEEEEEEEcccccEEEEc
Coil and Loop (DISEMBL)
mttsfiveqapkssilalssdsesckdsslLREEKEFQFqgkemdedaaltgrdektsvkkVSTLTLPLVISEKLQLTKAFVECegesidlsgdmgavgrilvpgtaegnHVMFLDLKgtiykttlvpsrtfcivsfghpeakvccksspfslilvdfPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTVVL
Flexible Loop (DISEMBL)
mttsfiveqapkssilalssdsesckdSSLLREEKEfqfqgkemdedaaltgrdektsvkkvstltlplvisEKLQLTKAFVECEGEsidlsgdmgAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTVVL
Low Complexity Region (SEG)
MTTSFIVEQAPKssilalssdsesckdssllREEKEFQFQGKEMDEDAALTGRDEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTVVL
Disordered region (IsUnstruct)
*************************************************************VSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTV**
Disordered Region (DISOPRED)
********************************************************************LVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVP********MFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTVVL
Disordered Region (DISEMBL)
MTTSFIVEQAPKSSILA*************LREEKEFQFQGKEMDEDAALTGRDEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTVVL
Disordered Region (DISPRO)
*TTSFIVEQAPKSS**************************************************LTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTVVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTSFIVEQAPKSSILALSSDSESCKDSSLLREEKEFQFQGKEMDEDAALTGRDEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIYIFSSSLVIFQIVYDFDIAKTTVVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q9FLU1	454	DNA-binding protein BIN4	yes	no	0.538	0.231	0.525	9e-26

>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2

 Score =  116 bits (291), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 81/118 (68%), Gaps = 13/118 (11%)

Query: 54  DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVM 113
           D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAVGR++V  T  G+  M
Sbjct: 262 DQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-GD--M 318

Query: 114 FLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           +LDLKGTIYK+T++PSRTFC+V+ G  EAK+         I+ DF   I L+ +S +Y
Sbjct: 319 YLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI-------EAIMNDF---IQLIPQSNVY 366

Component of the DNA topoisomerase VI complex. Binds to DNA. Required for chromatin organization and progression of endoreduplication cycles. The loss of BIN4 activates the ATM- and ATR-dependent DNA damage responses in postmitotic cells and induces the ectopic expression of the mitotic G2/M-specific cyclin B1;1 gene in non-dividing cells.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
359490779	397	PREDICTED: uncharacterized protein LOC10	0.784	0.385	0.418	6e-32
224121130	187	predicted protein [Populus trichocarpa]	0.502	0.524	0.611	5e-30
357464307	416	DNA-binding protein BIN4 [Medicago trunc	0.615	0.288	0.5	9e-26
356507532	380	PREDICTED: uncharacterized protein LOC10	0.533	0.273	0.525	1e-24
240256338	451	DNA-binding protein BIN4 [Arabidopsis th	0.538	0.232	0.525	4e-24
238481371	446	DNA-binding protein BIN4 [Arabidopsis th	0.538	0.235	0.525	4e-24
238481373	454	DNA-binding protein BIN4 [Arabidopsis th	0.538	0.231	0.525	4e-24
238481367	450	DNA-binding protein BIN4 [Arabidopsis th	0.538	0.233	0.525	4e-24
45736025	320	unknown protein [Oryza sativa Japonica G	0.4	0.243	0.628	5e-24
238481365	432	DNA-binding protein BIN4 [Arabidopsis th	0.538	0.243	0.525	5e-24

>gi|359490779|ref|XP_002269798.2| PREDICTED: uncharacterized protein LOC100252112 [Vitis vinifera] gi|302144012|emb|CBI23117.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/222 (41%), Positives = 113/222 (50%), Gaps = 69/222 (31%)

Query: 9   QAPKSSILALSSDSESCKDSSLLREE----------KEFQFQGKEMDEDAALTGRD---- 54
            AP  S+  LSSDSESC D+S +RE+          K  QF  KE D   +  G++    
Sbjct: 100 NAPNHSVWKLSSDSESCPDNSSMREDYIHHEESSVHKTTQFPDKEKDAVLSENGQESLLN 159

Query: 55  ----EKTSVKKVS-----------------------------------------TLTLPL 69
               EK+  K+V                                          +  LPL
Sbjct: 160 EASKEKSPKKRVKVEDHISSKKKKANSDMKGKGHDDGTELLEEEASDKHTEPQVSSGLPL 219

Query: 70  VISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPS 129
           V+SEK+  +KA VECEGESIDLSGDMGAVGRI++  T   NH MFLDLKGTIYKTT+VPS
Sbjct: 220 VLSEKVHRSKALVECEGESIDLSGDMGAVGRIVILDTPSRNHEMFLDLKGTIYKTTIVPS 279

Query: 130 RTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           RTFCIVSFG  EAKV         ++ DF   I L  +S +Y
Sbjct: 280 RTFCIVSFGQSEAKV-------EAVMNDF---IQLKPQSNVY 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121130|ref|XP_002318505.1| predicted protein [Populus trichocarpa] gi|222859178|gb|EEE96725.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 81/108 (75%), Gaps = 10/108 (9%)

Query: 64  TLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYK 123
           T  LPLV+SEK+Q +KA VECEGESIDLSGDMGAVGR+++P T  GN  M+LDLKGTIY+
Sbjct: 1   TSRLPLVLSEKVQRSKALVECEGESIDLSGDMGAVGRVVIPDTPSGNSEMYLDLKGTIYR 60

Query: 124 TTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           TT+VPSRTFC+VSFG  EAK+         I+ DF   I L ++S +Y
Sbjct: 61  TTIVPSRTFCVVSFGQSEAKI-------EAIMNDF---IQLKTQSNVY 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464307|ref|XP_003602435.1| DNA-binding protein BIN4 [Medicago truncatula] gi|355491483|gb|AES72686.1| DNA-binding protein BIN4 [Medicago truncatula]

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 90/136 (66%), Gaps = 16/136 (11%)

Query: 40  QGKEMDEDAALTGRDEKTSVK----KVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDM 95
           +GK  D D  +  +DE+T  K     VS+  LPL++SEK+  TKA VEC+G+SIDLSGDM
Sbjct: 207 KGKGGDGDVEV--KDEETFEKPVEPNVSSSILPLMLSEKVHRTKALVECQGDSIDLSGDM 264

Query: 96  GAVGRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLIL 155
           GAVGR+++  +  G+  M LDLKGTIYKT+++PSRTFC+VSFG  EAK+         I+
Sbjct: 265 GAVGRVIISDSPSGDQEMCLDLKGTIYKTSIIPSRTFCVVSFGQTEAKI-------EAIM 317

Query: 156 VDFPILILLLSKSVIY 171
            DF   I L   S +Y
Sbjct: 318 NDF---IQLNPPSDVY 330

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507532|ref|XP_003522518.1| PREDICTED: uncharacterized protein LOC100795660 [Glycine max]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 81/120 (67%), Gaps = 16/120 (13%)

Query: 58  SVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDL 117
           +V+ VS+  LPL++SEK+Q TKA +EC+G+SIDLSGDMGAVGRI++  +  G+  M LDL
Sbjct: 185 NVRMVSSARLPLMLSEKVQRTKALIECQGDSIDLSGDMGAVGRIIISDSPSGDQEMCLDL 244

Query: 118 K------GTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           K      GTIYKT++VP RTFC+VSFG  EAKV         I+ DF   I L   S +Y
Sbjct: 245 KDFAVISGTIYKTSIVPCRTFCVVSFGQSEAKV-------EAIMNDF---IQLKPHSNVY 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256338|ref|NP_197851.5| DNA-binding protein BIN4 [Arabidopsis thaliana] gi|332005954|gb|AED93337.1| DNA-binding protein BIN4 [Arabidopsis thaliana]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 81/118 (68%), Gaps = 13/118 (11%)

Query: 54  DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVM 113
           D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAVGR++V  T  G+  M
Sbjct: 259 DQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-GD--M 315

Query: 114 FLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           +LDLKGTIYK+T++PSRTFC+V+ G  EAK+         I+ DF   I L+ +S +Y
Sbjct: 316 YLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI-------EAIMNDF---IQLIPQSNVY 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481371|ref|NP_001154738.1| DNA-binding protein BIN4 [Arabidopsis thaliana] gi|332005958|gb|AED93341.1| DNA-binding protein BIN4 [Arabidopsis thaliana]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 81/118 (68%), Gaps = 13/118 (11%)

Query: 54  DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVM 113
           D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAVGR++V  T  G+  M
Sbjct: 254 DQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-GD--M 310

Query: 114 FLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           +LDLKGTIYK+T++PSRTFC+V+ G  EAK+         I+ DF   I L+ +S +Y
Sbjct: 311 YLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI-------EAIMNDF---IQLIPQSNVY 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481373|ref|NP_001154739.1| DNA-binding protein BIN4 [Arabidopsis thaliana] gi|257050999|sp|Q9FLU1.2|BIN4_ARATH RecName: Full=DNA-binding protein BIN4; AltName: Full=Protein BRASSINOSTEROID INSENSITIVE 4; AltName: Full=Protein MIDGET gi|332005959|gb|AED93342.1| DNA-binding protein BIN4 [Arabidopsis thaliana]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 81/118 (68%), Gaps = 13/118 (11%)

Query: 54  DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVM 113
           D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAVGR++V  T  G+  M
Sbjct: 262 DQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-GD--M 318

Query: 114 FLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           +LDLKGTIYK+T++PSRTFC+V+ G  EAK+         I+ DF   I L+ +S +Y
Sbjct: 319 YLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI-------EAIMNDF---IQLIPQSNVY 366

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481367|ref|NP_001154736.1| DNA-binding protein BIN4 [Arabidopsis thaliana] gi|238481369|ref|NP_001154737.1| DNA-binding protein BIN4 [Arabidopsis thaliana] gi|332005956|gb|AED93339.1| DNA-binding protein BIN4 [Arabidopsis thaliana] gi|332005957|gb|AED93340.1| DNA-binding protein BIN4 [Arabidopsis thaliana]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 81/118 (68%), Gaps = 13/118 (11%)

Query: 54  DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVM 113
           D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAVGR++V  T  G+  M
Sbjct: 258 DQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-GD--M 314

Query: 114 FLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           +LDLKGTIYK+T++PSRTFC+V+ G  EAK+         I+ DF   I L+ +S +Y
Sbjct: 315 YLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI-------EAIMNDF---IQLIPQSNVY 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45736025|dbj|BAD13052.1| unknown protein [Oryza sativa Japonica Group] gi|45736067|dbj|BAD13093.1| unknown protein [Oryza sativa Japonica Group]

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 65/78 (83%)

Query: 67  LPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVMFLDLKGTIYKTTL 126
           LPL+I +K+Q +KA +EC+G+SIDLSGD+GAVGRI++  +  GN  + LDLKGTIYK+T+
Sbjct: 140 LPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIYKSTI 199

Query: 127 VPSRTFCIVSFGHPEAKV 144
           VPSRTFC+VS G  EAK+
Sbjct: 200 VPSRTFCVVSVGQTEAKI 217

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481365|ref|NP_001154735.1| DNA-binding protein BIN4 [Arabidopsis thaliana] gi|332005955|gb|AED93338.1| DNA-binding protein BIN4 [Arabidopsis thaliana]

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 81/118 (68%), Gaps = 13/118 (11%)

Query: 54  DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAVGRILVPGTAEGNHVM 113
           D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAVGR++V  T  G+  M
Sbjct: 240 DQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-GD--M 296

Query: 114 FLDLKGTIYKTTLVPSRTFCIVSFGHPEAKVCCKSSPFSLILVDFPILILLLSKSVIY 171
           +LDLKGTIYK+T++PSRTFC+V+ G  EAK+         I+ DF   I L+ +S +Y
Sbjct: 297 YLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI-------EAIMNDF---IQLIPQSNVY 344

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2153939	454	BIN4 "AT5G24630" [Arabidopsis	0.512	0.220	0.547	4.5e-24

TAIR|locus:2153939 BIN4 "AT5G24630" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 4.5e-24, P = 4.5e-24
 Identities = 58/106 (54%), Positives = 75/106 (70%)

Query:    42 KEMDEDAALTGR---DEKTSVKKVSTLTLPLVISEKLQLTKAFVECEGESIDLSGDMGAV 98
             K+ D D  +      D+K      S+  LPLV+SEK+  TK  VECEG+SIDLSGDMGAV
Sbjct:   247 KDTDTDTIIAEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAV 306

Query:    99 GRILVPGTAEGNHVMFLDLKGTIYKTTLVPSRTFCIVSFGHPEAKV 144
             GR++V  T  G+  M+LDLKGTIYK+T++PSRTFC+V+ G  EAK+
Sbjct:   307 GRVVVSDTT-GD--MYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI 349


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       176   0.00081  109 3  11 22  0.38    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.50u 0.09s 15.59t   Elapsed:  00:00:01
  Total cpu time:  15.50u 0.09s 15.59t   Elapsed:  00:00:01
  Start:  Mon May 20 22:07:53 2013   End:  Mon May 20 22:07:54 2013

GO:0009913 "epidermal cell differentiation" evidence=IMP

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IPI

GO:0010090 "trichome morphogenesis" evidence=RCA;IMP

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0051276 "chromosome organization" evidence=RCA;IMP

GO:0000003 "reproduction" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0003002 "regionalization" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033043 "regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XII.841.1 hypothetical protein (187 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PRK06764	105	hypothetical protein; Provisional	81.96

>PRK06764 hypothetical protein; Provisional

Probab=81.96  E-value=2.1  Score=34.04  Aligned_cols=64  Identities=25%  Similarity=0.307  Sum_probs=44.3

Q ss_pred             ccccccceeeEEeecccccceeeee------ecCceec-ccCCcccee--eEEecCCCCCCceeEEeeeceeEee
Q 029330           59 VKKVSTLTLPLVISEKLQLTKAFVE------CEGESID-LSGDMGAVG--RILVPGTAEGNHVMFLDLKGTIYKT  124 (195)
Q Consensus        59 ~~svS~g~lPLvlpekv~rsK~LvE------~eg~slD-LsGD~GAVG--Rl~V~~s~~~~~~L~LDLKG~iY~a  124 (195)
                      +|+||+.+.|-+--|+++.-.+.+-      +.|.++| ||||.-||-  ...+.=  +....-.+-..|+||+-
T Consensus        25 epsvs~ae~~q~~~enfn~i~v~mn~~e~y~lsgrsidilsgdkeaiqlnkyti~f--~kpg~yvirvngciy~d   97 (105)
T PRK06764         25 EPSVSAAESQQVKEENFNAIDVSMNINELYVLSGRSIDVLSGDKEAIQLNKYTIRF--SKPGKYVIRVNGCIYND   97 (105)
T ss_pred             ccccchhcchhhhhcccceEEEEEeccceEEEcCceeeeecCChhheEeeeeEEEe--cCCccEEEEEccEEeee
Confidence            8999999999888888875444443      3378999 799999984  222321  12234677788999974

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00