Citrus Sinensis ID: 029332

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESYSQR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcHHHHHHHHHHHHcccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccHHHHHHHEEEEEEcccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEEEcccEEccc
Coil and Loop (DISEMBL)
mysnmgtqpgpgmprpaadaqpnpfgnafygagsglirgglgaygekilgssSEYVQSnisryfsdpqyyfQVNDQYVRNKLKVVlfpflhrghwtritepvggrlsykppiydinapdlyipfMAFGTYVVLAGFtlglqgkftpeALNWLFIKGLFGWFMQFMLLKVTLLslgsgeaplLDVVAYAGESYSQR
Flexible Loop (DISEMBL)
MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPflhrghwtritepvggrlsYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESYSQR
Low Complexity Region (SEG)
MYSNMGTQPGPGMPRPAADAQPNPFGNAFygagsglirgglgaygEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESYSQR
Disordered region (IsUnstruct)
************************FGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYA*******
Disordered Region (DISOPRED)
******************************************************YVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHW***************PIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESYSQR
Disordered Region (DISEMBL)
****************AADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESYSQR
Disordered Region (DISPRO)
***********************PFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESYSQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESYSQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q4FZQ0	300	Protein YIF1B-B OS=Xenopu	N/A	no	0.697	0.453	0.358	2e-18
Q6GN58	300	Protein YIF1B-A OS=Xenopu	N/A	no	0.697	0.453	0.358	2e-18
Q6P301	300	Protein YIF1B OS=Xenopus	yes	no	0.697	0.453	0.358	2e-18
Q5BJH7	314	Protein YIF1B OS=Homo sap	yes	no	0.856	0.531	0.34	1e-17
Q5U3G6	304	Protein YIF1B OS=Danio re	yes	no	0.692	0.444	0.361	2e-17
Q9CX30	311	Protein YIF1B OS=Mus musc	yes	no	0.692	0.434	0.354	5e-17
Q3T196	293	Protein YIF1A OS=Bos taur	no	no	0.897	0.597	0.328	6e-17
Q91XB7	293	Protein YIF1A OS=Mus musc	no	no	0.594	0.395	0.390	2e-16
Q6PC24	307	Protein YIF1A OS=Danio re	no	no	0.876	0.557	0.331	5e-16
O95070	293	Protein YIF1A OS=Homo sap	no	no	0.523	0.348	0.431	5e-16

>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 26/162 (16%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
             PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVAPR-------FDINAPDLYIPVMAFITYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
           WL ++ L       +LL + L+++ + +   +D+VA++G  Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFSGYKY 216

Xenopus laevis (taxid: 8355)

>sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 26/162 (16%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
             PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVAPR-------FDINAPDLYIPVMAFVTYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
           WL ++ L       +LL + L+++ + +   +D+VA+ G  Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFTGYKY 216

Xenopus laevis (taxid: 8355)

>sp|Q6P301|YIF1B_XENTR Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 26/162 (16%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
             PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVAPR-------FDINAPDLYIPVMAFITYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
           WL ++ L       +LL + L+++ + +   +D+VA++G  Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFSGYKY 216

Xenopus tropicalis (taxid: 8364)

>sp|Q5BJH7|YIF1B_HUMAN Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 100/200 (50%), Gaps = 33/200 (16%)

Query: 6   GTQPGPG-MPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYF 64
           G Q  PG +  PAA   P P         S +      AYG  +     E V  NI R+ 
Sbjct: 51  GAQRAPGGLSYPAA--SPTPHAAFLADPVSNMAM----AYGSSLAAQGKELVDKNIDRFI 104

Query: 65  --SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDL 120
             +  +YYF V+  YV  KL ++ FP+LH+    +  +  PV        P +D+NAPDL
Sbjct: 105 PITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVA-------PRFDVNAPDL 157

Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNWLFIKGLFGWFMQFMLLKVTLL 172
           YIP MAF TYV++AG  LG Q +F+P+        AL WL ++ L       +LL + L+
Sbjct: 158 YIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVL------AILLSLYLV 211

Query: 173 SLGSGEAPLLDVVAYAGESY 192
           ++ + +   +D+VA+ G  Y
Sbjct: 212 TVNT-DLTTIDLVAFLGYKY 230

Homo sapiens (taxid: 9606)

>sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 28/163 (17%)

Query: 43  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWT---R 97
           AYG  +     E +  N+ R+   S  +YYF V+  YV  KL +++FP++H  +W    +
Sbjct: 73  AYGSSLASHGKEMMDKNLDRFIPISKLKYYFAVDTVYVGKKLGLLVFPYMH-DNWEVNYQ 131

Query: 98  ITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------AL 149
              PV        P +DINAPDLYIP M F TYV++AG  LG Q +F+PE        AL
Sbjct: 132 QDTPVA-------PRFDINAPDLYIPVMGFITYVLVAGLALGTQNRFSPEILGIQASSAL 184

Query: 150 NWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
            WL I+ L       +LL + L+++ + +   +D+VA++G  Y
Sbjct: 185 VWLIIEVL------AVLLSLYLVTVNT-DLTTIDLVAFSGYKY 220

Danio rerio (taxid: 7955)

>sp|Q9CX30|YIF1B_MOUSE Protein YIF1B OS=Mus musculus GN=Yif1b PE=2 SV=2

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 88/161 (54%), Gaps = 26/161 (16%)

Query: 44  YGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE- 100
           YG  +     E V  NI R+   S  +YYF V+  YV  KL +++FP+LH+    +  + 
Sbjct: 81  YGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQD 140

Query: 101 -PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNW 151
            PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+P+        AL W
Sbjct: 141 TPVAPR-------FDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASSALAW 193

Query: 152 LFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESY 192
           L ++      +  +LL + L+++ + +   +D+VA+ G  Y
Sbjct: 194 LTLE------VVAILLSLYLVTVNT-DLTTIDLVAFLGYKY 227

Mus musculus (taxid: 10090)

>sp|Q3T196|YIF1A_BOVIN Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 14/189 (7%)

Query: 7   TQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFS- 65
           +QPG G P P AD       N  +  G  +    + AYG  I     + +   + R+ S 
Sbjct: 35  SQPG-GYPAPGADVA----FNVNHLLGDPMANMAM-AYGSSIASHGKDMMNKELHRFVSV 88

Query: 66  -DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPF 124
              +Y+F V+  YV  KL +++FP+ H+    + +  V       PP  D+NAPDLYIP 
Sbjct: 89  NKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVP-----LPPRQDLNAPDLYIPT 143

Query: 125 MAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTL-LSLGSGEAPLLD 183
           MAF TYV+LAG  LG+Q +F+PE L       L    M+ + L + + L+    +     
Sbjct: 144 MAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGIYLATVRSDLSTFH 203

Query: 184 VVAYAGESY 192
           ++AY+G  Y
Sbjct: 204 LLAYSGYKY 212

Possible role in transport between endoplasmic reticulum and Golgi.

Bos taurus (taxid: 9913)

>sp|Q91XB7|YIF1A_MOUSE Protein YIF1A OS=Mus musculus GN=Yif1a PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 7/123 (5%)

Query: 43  AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  I     + V   + R+ S    +Y+F V+  YV  KL +++FP+ H+    + + 
Sbjct: 65  AYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWKMQYSH 124

Query: 101 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGW 160
            V       PP  D+NAPDLYIP MAF TYV+LAG  LG+Q +F+PE L       L   
Sbjct: 125 DVP-----LPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTALVWV 179

Query: 161 FMQ 163
           FM+
Sbjct: 180 FME 182

Possible role in transport between endoplasmic reticulum and Golgi.

Mus musculus (taxid: 10090)

>sp|Q6PC24|YIF1A_DANRE Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 22/193 (11%)

Query: 4   NMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRY 63
           NM   P  G      +   +P  NA    GS L   G             + V   I+R+
Sbjct: 48  NMAEMPAGGQEPGVGNIFADPMANAAMMYGSTLANQG------------KDIVNKEINRF 95

Query: 64  FS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLY 121
            S    +Y+F V+ +YV  KL +++FP+ H+    R       R +   P +D+NAPDLY
Sbjct: 96  MSVNKLKYFFAVDTKYVMKKLLLLMFPYTHQDWEVRY-----HRDTPLTPRHDVNAPDLY 150

Query: 122 IPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPL 181
           IP MAF TY++LAG  LG+Q +F+PE L       L  W +  +L+ +  L L +    L
Sbjct: 151 IPTMAFITYILLAGMALGIQKRFSPEVLGLCASTALV-WMIIEVLVMLLSLYLLTVHTDL 209

Query: 182 --LDVVAYAGESY 192
              D+VAY+G  Y
Sbjct: 210 STFDLVAYSGYKY 222

Possible role in transport between endoplasmic reticulum and Golgi.

Danio rerio (taxid: 7955)

>sp|O95070|YIF1A_HUMAN Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 7/109 (6%)

Query: 43  AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
           AYG  I     + V   + R+ S    +Y+F V+  YV  KL +++FP+ H+ +W    E
Sbjct: 65  AYGSSIASHGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQ-NW----E 119

Query: 101 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEAL 149
               R +  PP  D+NAPDLYIP MAF TYV+LAG  LG+Q +F+PE L
Sbjct: 120 VQYSRDAPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVL 168

Possible role in transport between endoplasmic reticulum and Golgi.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
255587105	269	Protein YIF1A, putative [Ricinus communi	0.979	0.710	0.875	1e-93
224095666	269	predicted protein [Populus trichocarpa]	0.979	0.710	0.854	2e-91
18397705	269	integral membrane HRF1-like protein [Ara	0.979	0.710	0.854	1e-90
449468758	269	PREDICTED: protein YIF1B-A-like [Cucumis	0.897	0.650	0.92	3e-90
30695009	269	YIF1 integral membrane domain-containing	0.979	0.710	0.829	3e-88
110743793	269	hypothetical protein [Arabidopsis thalia	0.979	0.710	0.829	3e-88
297846062	265	integral membrane HRF1 family protein [A	0.948	0.698	0.859	5e-88
9755388	286	F17F8.24 [Arabidopsis thaliana]	0.979	0.667	0.797	6e-88
356526597	273	PREDICTED: protein YIF1B-like [Glycine m	0.984	0.703	0.829	7e-88
388501636	269	unknown [Lotus japonicus]	0.979	0.710	0.829	2e-87

>gi|255587105|ref|XP_002534138.1| Protein YIF1A, putative [Ricinus communis] gi|223525796|gb|EEF28242.1| Protein YIF1A, putative [Ricinus communis]

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 169/193 (87%), Positives = 181/193 (93%), Gaps = 2/193 (1%)

Query: 1   MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 60
           MY+N+GTQPG  +PRP  + QPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI
Sbjct: 1   MYNNVGTQPG--VPRPPTNPQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 58

Query: 61  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120
           SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 118

Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 180
           YIPFMAFGTY+VLAG +LGL GKF+PE LNWLF+KGL GWFMQ  LLKVTLLSLGSGEAP
Sbjct: 119 YIPFMAFGTYIVLAGLSLGLNGKFSPENLNWLFVKGLLGWFMQVALLKVTLLSLGSGEAP 178

Query: 181 LLDVVAYAGESYS 193
           LLD+VAYAG +++
Sbjct: 179 LLDIVAYAGYTFT 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095666|ref|XP_002310429.1| predicted protein [Populus trichocarpa] gi|222853332|gb|EEE90879.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/193 (85%), Positives = 178/193 (92%), Gaps = 2/193 (1%)

Query: 1   MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 60
           MY+N+G  P PG+PRP  + QP PFGNAFYGAGSGLI+GGLGAYGEKILGSSSEYVQSNI
Sbjct: 1   MYNNVG--PQPGVPRPPTNPQPTPFGNAFYGAGSGLIKGGLGAYGEKILGSSSEYVQSNI 58

Query: 61  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120
           SRYFSDPQYYFQVND YVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 118

Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 180
           YIPFMAFGTYVVLAG +LGL GKF+PEALNWLF+KGL GWFMQ  LLK+ LLSLGSGEAP
Sbjct: 119 YIPFMAFGTYVVLAGLSLGLNGKFSPEALNWLFVKGLLGWFMQVALLKIILLSLGSGEAP 178

Query: 181 LLDVVAYAGESYS 193
           LLD+VAYAG +++
Sbjct: 179 LLDMVAYAGYTFT 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397705|ref|NP_564367.1| integral membrane HRF1-like protein [Arabidopsis thaliana] gi|145324088|ref|NP_001077633.1| integral membrane HRF1-like protein [Arabidopsis thaliana] gi|14532658|gb|AAK64057.1| unknown protein [Arabidopsis thaliana] gi|21280943|gb|AAM44952.1| unknown protein [Arabidopsis thaliana] gi|21554340|gb|AAM63447.1| unknown [Arabidopsis thaliana] gi|332193168|gb|AEE31289.1| integral membrane HRF1-like protein [Arabidopsis thaliana] gi|332193169|gb|AEE31290.1| integral membrane HRF1-like protein [Arabidopsis thaliana]

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/193 (85%), Positives = 177/193 (91%), Gaps = 2/193 (1%)

Query: 1   MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 60
           MY+NMG  P PGMPRP  + +P PFGN F GAGSG IRGGLGAYGE+ILGSSSEYVQSNI
Sbjct: 1   MYNNMG--PQPGMPRPPGNPEPGPFGNPFTGAGSGFIRGGLGAYGERILGSSSEYVQSNI 58

Query: 61  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120
           SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 180
           YIPFMAFGTYVVLAG +LGL GKFTPEALNWLF+KGL GWF+Q MLLKVTLLSLGSGEAP
Sbjct: 119 YIPFMAFGTYVVLAGLSLGLNGKFTPEALNWLFVKGLVGWFLQVMLLKVTLLSLGSGEAP 178

Query: 181 LLDVVAYAGESYS 193
           LLD+VAY G +++
Sbjct: 179 LLDIVAYGGYAFA 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468758|ref|XP_004152088.1| PREDICTED: protein YIF1B-A-like [Cucumis sativus] gi|449502274|ref|XP_004161595.1| PREDICTED: protein YIF1B-A-like [Cucumis sativus]

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 161/175 (92%), Positives = 170/175 (97%)

Query: 19  DAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYV 78
            +QPNPFGNAFYGAGSGLIRGGLGAYGEKI GSSSEYVQSNISRYFSDPQYYFQVNDQYV
Sbjct: 17  SSQPNPFGNAFYGAGSGLIRGGLGAYGEKIFGSSSEYVQSNISRYFSDPQYYFQVNDQYV 76

Query: 79  RNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTL 138
           RNKLKVVLFPFLHRGHWTRIT+P+GGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGF+L
Sbjct: 77  RNKLKVVLFPFLHRGHWTRITDPIGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFSL 136

Query: 139 GLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGESYS 193
           GLQGKFTPEAL+WLFIKGL GWFMQ MLLKVTLLSLGSGEAPLLD+VAYAG +++
Sbjct: 137 GLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDIVAYAGYAFT 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695009|ref|NP_191509.2| YIF1 integral membrane domain-containing protein [Arabidopsis thaliana] gi|332646412|gb|AEE79933.1| YIF1 integral membrane domain-containing protein [Arabidopsis thaliana] gi|385137882|gb|AFI41202.1| HRF1 protein, partial [Arabidopsis thaliana]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/193 (82%), Positives = 174/193 (90%), Gaps = 2/193 (1%)

Query: 1   MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 60
           MY+NMG  P PGM  P A+ QP+PFGN F G GSGLIR GLGAYGEKI GSSSEYVQSNI
Sbjct: 1   MYNNMG--PRPGMAMPQANPQPSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNI 58

Query: 61  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120
           SRYFSDPQYYFQVNDQYVRNKLK+VL PFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 180
           YIP MAFGTYVVLAG +LGL GKFTPEALNWLF+KG+ GWF+Q MLLK+TLLSLGSGEAP
Sbjct: 119 YIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGSGEAP 178

Query: 181 LLDVVAYAGESYS 193
           LLD+VAYAG +++
Sbjct: 179 LLDIVAYAGYTFT 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743793|dbj|BAE99732.1| hypothetical protein [Arabidopsis thaliana]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/193 (82%), Positives = 174/193 (90%), Gaps = 2/193 (1%)

Query: 1   MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 60
           MY+NMG  P PGM  P A+ QP+PFGN F G GSGLIR GLGAYGEKI GSSSEYVQSNI
Sbjct: 1   MYNNMG--PRPGMAMPQANPQPSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNI 58

Query: 61  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120
           SRYFSDPQYYFQVNDQYVRNKLK+VL PFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 180
           YIP MAFGTYVVLAG +LGL GKFTPEALNWLF+KG+ GWF+Q MLLK+TLLSLGSGEAP
Sbjct: 119 YIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGSGEAP 178

Query: 181 LLDVVAYAGESYS 193
           LLD+VAYAG +++
Sbjct: 179 LLDIVAYAGYTFT 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846062|ref|XP_002890912.1| integral membrane HRF1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297336754|gb|EFH67171.1| integral membrane HRF1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  328 bits (842), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 159/185 (85%), Positives = 170/185 (91%)

Query: 9   PGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQ 68
           P PGM RP  + +P PFGN F GAGSG IRGGLGAYGE+ILGSSSEYVQSNISRYFSDPQ
Sbjct: 3   PQPGMQRPPGNPEPGPFGNPFTGAGSGFIRGGLGAYGERILGSSSEYVQSNISRYFSDPQ 62

Query: 69  YYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFG 128
           YYFQVNDQYVRNKLKVVLFPFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDLYIPFMAFG
Sbjct: 63  YYFQVNDQYVRNKLKVVLFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPFMAFG 122

Query: 129 TYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYA 188
           TYVVLAG +LGL GKFTPEALNWLF+KGL GWF+Q MLLKVTLLSLGSGEAPLLD+VAY 
Sbjct: 123 TYVVLAGLSLGLNGKFTPEALNWLFVKGLVGWFLQVMLLKVTLLSLGSGEAPLLDIVAYG 182

Query: 189 GESYS 193
           G +++
Sbjct: 183 GYAFA 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9755388|gb|AAF98195.1|AC000107_18 F17F8.24 [Arabidopsis thaliana]

 Score =  328 bits (841), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 165/207 (79%), Positives = 177/207 (85%), Gaps = 16/207 (7%)

Query: 1   MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 60
           MY+NMG  P PGMPRP  + +P PFGN F GAGSG IRGGLGAYGE+ILGSSSEYVQSNI
Sbjct: 4   MYNNMG--PQPGMPRPPGNPEPGPFGNPFTGAGSGFIRGGLGAYGERILGSSSEYVQSNI 61

Query: 61  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHR--------------GHWTRITEPVGGRL 106
           SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHR              GHWTRI+EPVGGRL
Sbjct: 62  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRPFNCTIVGSASNPQGHWTRISEPVGGRL 121

Query: 107 SYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFML 166
           SYKPPIYDINAPDLYIPFMAFGTYVVLAG +LGL GKFTPEALNWLF+KGL GWF+Q ML
Sbjct: 122 SYKPPIYDINAPDLYIPFMAFGTYVVLAGLSLGLNGKFTPEALNWLFVKGLVGWFLQVML 181

Query: 167 LKVTLLSLGSGEAPLLDVVAYAGESYS 193
           LKVTLLSLGSGEAPLLD+VAY G +++
Sbjct: 182 LKVTLLSLGSGEAPLLDIVAYGGYAFA 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526597|ref|XP_003531903.1| PREDICTED: protein YIF1B-like [Glycine max]

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 161/194 (82%), Positives = 174/194 (89%), Gaps = 2/194 (1%)

Query: 1   MYSNMGTQPG--PGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQS 58
           MY+N+G  PG     P+P   +QPN FGNAF  +GSGLIRGGLGAYGEKILGSSSEYVQS
Sbjct: 1   MYTNIGMPPGVPQHHPQPPMSSQPNLFGNAFNSSGSGLIRGGLGAYGEKILGSSSEYVQS 60

Query: 59  NISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP 118
           NISRYFSDPQYYFQVND YV+NKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP
Sbjct: 61  NISRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP 120

Query: 119 DLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGE 178
           DLYIP MAFGTYVVLAG +LGL+GKF+PEALNWLFIKGL GWFMQ  LLKVTLLSLGSGE
Sbjct: 121 DLYIPLMAFGTYVVLAGISLGLRGKFSPEALNWLFIKGLVGWFMQTALLKVTLLSLGSGE 180

Query: 179 APLLDVVAYAGESY 192
           APLLD++AYAG ++
Sbjct: 181 APLLDIIAYAGYTF 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501636|gb|AFK38884.1| unknown [Lotus japonicus]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/193 (82%), Positives = 175/193 (90%), Gaps = 2/193 (1%)

Query: 1   MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 60
           MY+N+G+QPG  +P+P   +Q NPFGNAF  AGSGLIRGGLGAYG KILGSSSEYVQSNI
Sbjct: 1   MYNNVGSQPG--VPQPPTSSQANPFGNAFQVAGSGLIRGGLGAYGGKILGSSSEYVQSNI 58

Query: 61  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120
           SRYFSDPQYYFQVND YV+NKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 118

Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 180
           YIP MAFGTYVVLAG +LGL GKF+PEALN LFIKGL GWFMQ  LLK+TLLSLGSGEAP
Sbjct: 119 YIPLMAFGTYVVLAGLSLGLHGKFSPEALNLLFIKGLLGWFMQASLLKMTLLSLGSGEAP 178

Query: 181 LLDVVAYAGESYS 193
           LLD++AYAG +++
Sbjct: 179 LLDIIAYAGYTFT 191

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2015716	269	AT1G30890 "AT1G30890" [Arabido	0.979	0.710	0.782	1.4e-80
TAIR|locus:2097583	269	AT3G59500 [Arabidopsis thalian	0.979	0.710	0.761	2.3e-78
CGD|CAL0004032	300	orf19.6642 [Candida albicans (	0.717	0.466	0.326	1.7e-20
UNIPROTKB|Q59PS2	300	YIF1 "Putative uncharacterized	0.717	0.466	0.326	1.7e-20
UNIPROTKB|G4NJF3	322	MGG_12628 "Hrf1 domain-contain	0.928	0.562	0.329	7.2e-20
ASPGD|ASPL0000002038	355	AN6628 [Emericella nidulans (t	0.733	0.402	0.347	3e-19
UNIPROTKB|Q2KGD9	579	MGCH7_ch7g396 "Putative unchar	0.928	0.312	0.329	5.6e-19
ZFIN|ZDB-GENE-030131-6922	307	yif1a "Yip1 interacting factor	0.851	0.540	0.331	4.6e-18
UNIPROTKB|Q5BJH7	314	YIF1B "Protein YIF1B" [Homo sa	0.882	0.547	0.328	5.8e-18
MGI|MGI:1924504	311	Yif1b "Yip1 interacting factor	0.871	0.546	0.322	1.6e-17

TAIR|locus:2015716 AT1G30890 "AT1G30890" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 151/193 (78%), Positives = 163/193 (84%)

Query:     1 MYSNMGTQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNI 60
             MY+NMG  P PGMPRP  + +P PFGN F                E+ILGSSSEYVQSNI
Sbjct:     1 MYNNMG--PQPGMPRPPGNPEPGPFGNPFTGAGSGFIRGGLGAYGERILGSSSEYVQSNI 58

Query:    61 SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120
             SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct:    59 SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query:   121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 180
             YIPFMAFGTYVVLAG +LGL GKFTPEALNWLF+KGL GWF+Q MLLKVTLLSLGSGEAP
Sbjct:   119 YIPFMAFGTYVVLAGLSLGLNGKFTPEALNWLFVKGLVGWFLQVMLLKVTLLSLGSGEAP 178

Query:   181 LLDVVAYAGESYS 193
             LLD+VAY G +++
Sbjct:   179 LLDIVAYGGYAFA 191

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2097583 AT3G59500 [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 147/193 (76%), Positives = 161/193 (83%)

Query:     1 MYSNMGTQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNI 60
             MY+NMG  P PGM  P A+ QP+PFGN F                EKI GSSSEYVQSNI
Sbjct:     1 MYNNMG--PRPGMAMPQANPQPSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNI 58

Query:    61 SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 120
             SRYFSDPQYYFQVNDQYVRNKLK+VL PFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct:    59 SRYFSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query:   121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 180
             YIP MAFGTYVVLAG +LGL GKFTPEALNWLF+KG+ GWF+Q MLLK+TLLSLGSGEAP
Sbjct:   119 YIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGSGEAP 178

Query:   181 LLDVVAYAGESYS 193
             LLD+VAYAG +++
Sbjct:   179 LLDIVAYAGYTFT 191

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

CGD|CAL0004032 orf19.6642 [Candida albicans (taxid:5476)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 46/141 (32%), Positives = 80/141 (56%)

Query:    52 SSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPP 111
             S++Y+Q N      D +YYFQV++ YV  K+ ++L P+ H+  W R++    G   + PP
Sbjct:    77 SNQYLQENFGSLQGDIKYYFQVSNSYVFKKIILILMPYNHKD-WNRVSTKETGTNQFLPP 135

Query:   112 IYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTL 171
               DINAPDLY+P M+F TY++L     G+ G F P+   +L  + +    +  ++ K  L
Sbjct:   136 NLDINAPDLYLPLMSFVTYILLWAAFQGINGDFHPQLFGYLASQTIAFSVLDVVIFKTGL 195

Query:   172 LSLGSGEAPLLDVVAYAGESY 192
               L   ++ + D+++++G  Y
Sbjct:   196 YLLNCPQSKIYDIISFSGYKY 216

GO:0003674 "molecular_function" evidence=ND

GO:0030134 "ER to Golgi transport vesicle" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q59PS2 YIF1 "Putative uncharacterized protein YIF1" [Candida albicans SC5314 (taxid:237561)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 46/141 (32%), Positives = 80/141 (56%)

Query:    52 SSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPP 111
             S++Y+Q N      D +YYFQV++ YV  K+ ++L P+ H+  W R++    G   + PP
Sbjct:    77 SNQYLQENFGSLQGDIKYYFQVSNSYVFKKIILILMPYNHKD-WNRVSTKETGTNQFLPP 135

Query:   112 IYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTL 171
               DINAPDLY+P M+F TY++L     G+ G F P+   +L  + +    +  ++ K  L
Sbjct:   136 NLDINAPDLYLPLMSFVTYILLWAAFQGINGDFHPQLFGYLASQTIAFSVLDVVIFKTGL 195

Query:   172 LSLGSGEAPLLDVVAYAGESY 192
               L   ++ + D+++++G  Y
Sbjct:   196 YLLNCPQSKIYDIISFSGYKY 216

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4NJF3 MGG_12628 "Hrf1 domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 64/194 (32%), Positives = 98/194 (50%)

Query:     6 GTQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYFS 65
             G  P P   +  A  Q N FG  +                        E +  NI+RY S
Sbjct:    45 GGSPYPQQQQGGAGPQ-NMFGQ-YGQFMNDPAAQVAAHFGSTAFRQGQEIIDQNINRYLS 102

Query:    66 DP--QYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPV---GGRLSYKPPIYDINAPDL 120
                 ++YF V + YV NK+ +VLFP+ H+  W+R  +P    GG+  Y PP  D+N+PD+
Sbjct:   103 VHLLKHYFNVTNSYVINKIYLVLFPWRHKP-WSR--KPAMGPGGQEGYLPPRDDVNSPDM 159

Query:   121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVT--LLSLGSGE 178
             YIP M+  TY++L+    GL+G+F PE L       L     + ++LK+   ++S+ S  
Sbjct:   160 YIPVMSLVTYILLSTAIAGLRGQFQPELLGNTAGTALIVVAAEIIILKLGCYIMSI-SNN 218

Query:   179 APLLDVVAYAGESY 192
             + LLD+VAY+G  +
Sbjct:   219 SQLLDLVAYSGYKF 232

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000002038 AN6628 [Emericella nidulans (taxid:162425)]

 Score = 231 (86.4 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 56/161 (34%), Positives = 91/161 (56%)

Query:    49 LGSSSEYVQSNISRYFSDP--QYYFQVNDQYVRNKLKVVLFPFLHRGHWTR-----ITEP 101
             + +  EY++ N +RY S P  ++YF V++ YV NKL +VLFP+ H+  W+R      T  
Sbjct:    86 MAAGQEYMEQNFNRYVSIPALKHYFNVSNSYVINKLGLVLFPWRHKP-WSRQQARLTTAS 144

Query:   102 VG--GRLSYK-------PPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWL 152
              G  G++S++       PP  DIN+PD+YIP MA  TY++L+    G +G F PE L   
Sbjct:   145 TGPDGQISHQQYSSMFLPPRDDINSPDMYIPVMALVTYILLSAMLAGFRGNFHPELLGAT 204

Query:   153 FIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGESY 192
                 +     + + LK+ +  L  + ++ L+D+VAY+G  +
Sbjct:   205 TTTAIAVIVFEIICLKLAMYILSINNDSQLVDLVAYSGYKF 245

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IEA

UNIPROTKB|Q2KGD9 MGCH7_ch7g396 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 236 (88.1 bits), Expect = 5.6e-19, P = 5.6e-19
 Identities = 64/194 (32%), Positives = 98/194 (50%)

Query:     6 GTQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYFS 65
             G  P P   +  A  Q N FG  +                        E +  NI+RY S
Sbjct:    45 GGSPYPQQQQGGAGPQ-NMFGQ-YGQFMNDPAAQVAAHFGSTAFRQGQEIIDQNINRYLS 102

Query:    66 DP--QYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPV---GGRLSYKPPIYDINAPDL 120
                 ++YF V + YV NK+ +VLFP+ H+  W+R  +P    GG+  Y PP  D+N+PD+
Sbjct:   103 VHLLKHYFNVTNSYVINKIYLVLFPWRHKP-WSR--KPAMGPGGQEGYLPPRDDVNSPDM 159

Query:   121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVT--LLSLGSGE 178
             YIP M+  TY++L+    GL+G+F PE L       L     + ++LK+   ++S+ S  
Sbjct:   160 YIPVMSLVTYILLSTAIAGLRGQFQPELLGNTAGTALIVVAAEIIILKLGCYIMSI-SNN 218

Query:   179 APLLDVVAYAGESY 192
             + LLD+VAY+G  +
Sbjct:   219 SQLLDLVAYSGYKF 232

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030131-6922 yif1a "Yip1 interacting factor homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 60/181 (33%), Positives = 91/181 (50%)

Query:    16 PAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYFS--DPQYYFQV 73
             PA   +P   GN F                  +     + V   I+R+ S    +Y+F V
Sbjct:    53 PAGGQEPG-VGNIFADPMANAAMMYGST----LANQGKDIVNKEINRFMSVNKLKYFFAV 107

Query:    74 NDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVL 133
             + +YV  KL +++FP+ H+  W    E    R +   P +D+NAPDLYIP MAF TY++L
Sbjct:   108 DTKYVMKKLLLLMFPYTHQD-W----EVRYHRDTPLTPRHDVNAPDLYIPTMAFITYILL 162

Query:   134 AGFTLGLQGKFTPEALNWLFIKGLFGWFMQF--MLLKVTLLSLGSGEAPLLDVVAYAGES 191
             AG  LG+Q +F+PE L       L    ++   MLL + LL++ + +    D+VAY+G  
Sbjct:   163 AGMALGIQKRFSPEVLGLCASTALVWMIIEVLVMLLSLYLLTVHT-DLSTFDLVAYSGYK 221

Query:   192 Y 192
             Y
Sbjct:   222 Y 222

GO:0003674 "molecular_function" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|Q5BJH7 YIF1B "Protein YIF1B" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 64/195 (32%), Positives = 94/195 (48%)

Query:     6 GTQPGPG-MPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYF 64
             G Q  PG +  PAA   P P   AF                  +     E V  NI R+ 
Sbjct:    51 GAQRAPGGLSYPAAS--PTPHA-AFLADPVSNMAMAYGSS---LAAQGKELVDKNIDRFI 104

Query:    65 --SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDL 120
               +  +YYF V+  YV  KL ++ FP+LH+    +  +  PV        P +D+NAPDL
Sbjct:   105 PITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVA-------PRFDVNAPDL 157

Query:   121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWF---MQFMLLKVTLLSLGSG 177
             YIP MAF TYV++AG  LG Q +F+P+ L  L       W    +  +LL + L+++ + 
Sbjct:   158 YIPAMAFITYVLVAGLALGTQDRFSPDLLG-LQASSALAWLTLEVLAILLSLYLVTVNT- 215

Query:   178 EAPLLDVVAYAGESY 192
             +   +D+VA+ G  Y
Sbjct:   216 DLTTIDLVAFLGYKY 230

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924504 Yif1b "Yip1 interacting factor homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 62/192 (32%), Positives = 93/192 (48%)

Query:    14 PRPAADAQPNPFGNAFXXXXXXXXXXXX-XXXXEKILGSS-----SEYVQSNISRYF--S 65
             P      QP+P G  +                   + GSS      E V  NI R+   S
Sbjct:    45 PSRGYGGQPSPGGLGYPPSSSDAAFLAAPMSNMAMVYGSSLAAQGKELVDKNIDRFIPVS 104

Query:    66 DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDLYIP 123
               +YYF V+  YV  KL +++FP+LH+    +  +  PV        P +DINAPDLYIP
Sbjct:   105 KLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQDTPVA-------PRFDINAPDLYIP 157

Query:   124 FMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWF---MQFMLLKVTLLSLGSGEAP 180
              MAF TY+++AG  LG Q +F+P+ L  L       W    +  +LL + L+++ + +  
Sbjct:   158 AMAFITYILVAGLALGTQDRFSPDLLG-LQASSALAWLTLEVVAILLSLYLVTVNT-DLT 215

Query:   181 LLDVVAYAGESY 192
              +D+VA+ G  Y
Sbjct:   216 TIDLVAFLGYKY 227

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G30890	integral membrane HRF1 family protein; integral membrane HRF1 family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- integral to membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Hrf1 (InterPro-IPR005578); BEST Arabidopsis thaliana protein match is- integral membrane HRF1 family protein (TAIR-AT3G59500.1); Has 338 Blast hits to 338 proteins in 126 species- Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 89; Plants - 40; Viruses - 0; Other Eukaryotes - 40 (source- NCBI BLink). (269 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G59500	integral membrane HRF1 family protein; integral membrane HRF1 family protein; LOCATED IN- integ [...] (269 aa)						•		•	0.899
	FRS3	FRS3 (FAR1-related sequence 3); zinc ion binding; FAR1-related sequence 3 (FRS3); FUNCTIONS IN- [...] (851 aa)				•					0.625
	AT3G20830	protein kinase family protein; protein kinase family protein; FUNCTIONS IN- kinase activity; IN [...] (408 aa)				•					0.613
	AT3G43520	unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloropl [...] (240 aa)				•					0.595
	AT5G14030	translocon-associated protein beta (TRAPB) family protein; translocon-associated protein beta ( [...] (195 aa)				•					0.565
	DRT101	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101); intramolecular transferase, phosphotransferases / ma [...] (556 aa)				•					0.560
	AT5G63270	nitrate-responsive NOI protein, putative; nitrate-responsive NOI protein, putative; FUNCTIONS I [...] (80 aa)				•					0.548
	AT4G33930	glycine-rich protein; Encodes a protein with 14.6% glycine residues, similar to hyphally regula [...] (343 aa)				•					0.548
	RABA4D	RABA4D (RAB GTPASE HOMOLOG A4D); GTP binding; Encodes RABA4D, a member of the Arabidopsis RabA4 [...] (222 aa)				•					0.548
	AT2G43900	inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase; inositol or [...] (1316 aa)				•					0.548

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
pfam03878	240	pfam03878, YIF1, YIF1	2e-62
COG5197	284	COG5197, COG5197, Predicted membrane protein [Func	8e-25

>gnl|CDD|217776 pfam03878, YIF1, YIF1

 Score =  193 bits (491), Expect = 2e-62
 Identities = 72/153 (47%), Positives = 94/153 (61%), Gaps = 8/153 (5%)

Query: 43  AYGEKILGSSSEYVQSNISRYFSDPQ--YYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
            YG+ I     EYV+ N SR+ S  +  YYF V+  YV NKLK++LFP+LHR  W RI +
Sbjct: 13  QYGQSIANQGKEYVEKNFSRWVSVSKLKYYFAVDTAYVGNKLKLLLFPYLHR-DWERIYD 71

Query: 101 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGW 160
               R S  PP YD+NAPDLYIP MAF TY++LAG  LGLQG+F+PE L       L   
Sbjct: 72  ----RESPLPPRYDVNAPDLYIPTMAFITYILLAGLLLGLQGRFSPELLGLQASSALAWV 127

Query: 161 FMQFMLLKVTLLSLG-SGEAPLLDVVAYAGESY 192
           F++ + LK+ L  L  S     LD++AY+G  +
Sbjct: 128 FLEVLALKLGLYLLNVSSSLSTLDLLAYSGYKF 160

YIF1 (Yip1 interacting factor) is an integral membrane protein that is required for membrane fusion of ER derived vesicles. It also plays a role in the biogenesis of ER derived COPII transport vesicles. Length = 240

>gnl|CDD|227524 COG5197, COG5197, Predicted membrane protein [Function unknown]

 Score = 97.7 bits (243), Expect = 8e-25
 Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 8/151 (5%)

Query: 45  GEKILGSSSEYVQSNISRYFSDPQY--YFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPV 102
           G+       EYV        S  Q   YFQV+++YV NKLK++LFPFL++ +W RI +  
Sbjct: 59  GKDAFNQFQEYVNKATGNAASSQQISTYFQVSNRYVINKLKLILFPFLNK-NWQRIGDSE 117

Query: 103 GGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFM 162
           G    + PP  D+N+PD+Y+P M F TY++L     GL+G F PE L +     L    +
Sbjct: 118 G----FLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCV 173

Query: 163 QFMLLKVTLLSLGSGEAP-LLDVVAYAGESY 192
             ++ ++ L  L   + P  LD++AY+G  +
Sbjct: 174 DLLITRLGLYLLIDSKIPSFLDLLAYSGYKF 204

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG3094	284	consensus Predicted membrane protein [Function unk	100.0
PF03878	240	YIF1: YIF1; InterPro: IPR005578 This family includ	100.0
COG5197	284	Predicted membrane protein [Function unknown]	100.0
KOG3114	290	consensus Uncharacterized conserved protein [Funct	98.58
PF04893	172	Yip1: Yip1 domain; InterPro: IPR006977 This entry	89.58

>KOG3094 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=7.9e-68  Score=461.91  Aligned_cols=186  Identities=51%  Similarity=0.883  Sum_probs=173.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccccccchhhhhhHH---------HHHHHHHhhhhHHHHhhhhhhcC--CCcce
Q 029332            2 YSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLG---------AYGEKILGSSSEYVQSNISRYFS--DPQYY   70 (195)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~yG~~~~~~g~~yvq~n~~~y~s--~lkyY   70 (195)
                      +++.+++  +++++|+-+|.+.|+|++..|.|+++.+.+++         +|||+++++|+|||++|++||++  +||||
T Consensus        12 ~~~~~p~--a~~p~p~~dp~~Gp~g~~~~G~g~~~~~~~l~g~~~a~~~~~~Gk~~~~~~~E~v~~~~~k~~~~~~l~yY   89 (284)
T KOG3094|consen   12 PNHAGPA--APMPVPQFDPTPGPFGNPVTGAGAGFPVQGLGGSPMADMAMAYGKKIAGQGKEYVEKNLGKYVSVPKLKYY   89 (284)
T ss_pred             CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEE
Confidence            3444544  56777776788899999999999999999988         99999999999999999999997  78999


Q ss_pred             eeeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCccccchHHHHHHHHHHHHHhhhcCCCChhhhH
Q 029332           71 FQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALN  150 (195)
Q Consensus        71 F~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDLYIPlMa~vTYILL~g~~~G~~g~FsPE~Lg  150 (195)
                      |+|||+||.|||++|+|||+||+ |+|+.|.    +.++|||+|+||||||||+|||+|||||+|+.+|++|+||||.||
T Consensus        90 F~Vdn~YV~~KL~lilfPf~hk~-W~~~~~~----~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~Lg  164 (284)
T KOG3094|consen   90 FAVDNAYVGKKLKLILFPFLHKD-WTRIYER----ESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEALG  164 (284)
T ss_pred             EEechHHHhhhheEEEeeecCcc-hhhhhcc----cCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHHHH
Confidence            99999999999999999999995 9999883    469999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CCCCChhhheeeccccccc
Q 029332          151 WLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGESYSQ  194 (195)
Q Consensus       151 ~~as~al~~~~lEv~i~k~~~Y~l~-~~~~~~lDLvAy~GYKyV~  194 (195)
                      +++|++++||++|++++|+++|+++ ++++++||++||+|||||+
T Consensus       165 ~~~s~al~~v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~  209 (284)
T KOG3094|consen  165 ILASKALAWVILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVG  209 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheecccCCcchhHhhhhcccchHH
Confidence            9999999999999999999999999 5899999999999999985

>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins

Probab=100.00  E-value=3.8e-63  Score=429.01  Aligned_cols=149  Identities=48%  Similarity=0.899  Sum_probs=143.2

Q ss_pred             HHHHHHHHHhhhhHHHHhhhhhhcC--CCcceeeeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCC
Q 029332           41 LGAYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP  118 (195)
Q Consensus        41 ~~~yG~~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAP  118 (195)
                      ++||||+++++|+||||||++||++  ++||||||||+||+|||++|+|||+|| +|+|..+    +++++|||+|+|||
T Consensus        11 ~~q~G~~~~~~g~~~v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k-~W~r~~~----~~~~~~Pr~DvNAP   85 (240)
T PF03878_consen   11 AMQYGQSALNQGQEYVQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHK-DWSRKYE----QESYLPPREDVNAP   85 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccC-Ccccccc----ccCCCCchhhccCc
Confidence            4699999999999999999999997  799999999999999999999999999 6999877    34699999999999


Q ss_pred             ccccchHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCChhhheeeccccccc
Q 029332          119 DLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGS-GEAPLLDVVAYAGESYSQ  194 (195)
Q Consensus       119 DLYIPlMa~vTYILL~g~~~G~~g~FsPE~Lg~~as~al~~~~lEv~i~k~~~Y~l~~-~~~~~lDLvAy~GYKyV~  194 (195)
                      |||||+||++||||++|+.+|++|+||||.||.++|+|++||++|++++|+++|+++. ++++++||+||||||||+
T Consensus        86 DLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~  162 (240)
T PF03878_consen   86 DLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVG  162 (240)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHH
Confidence            9999999999999999999999999999999999999999999999999999999994 899999999999999985

It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.

>COG5197 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=4.9e-49  Score=339.37  Aligned_cols=147  Identities=35%  Similarity=0.654  Sum_probs=138.8

Q ss_pred             HHHHHHHhhhhHHHHhhhhhhcC--CCcceeeeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCcc
Q 029332           43 AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL  120 (195)
Q Consensus        43 ~yG~~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDL  120 (195)
                      ..||.++++++|||++++++..+  .+++||+|||+||.+||+||||||++| +|+|+-+..    .|+|||+|+|+|||
T Consensus        57 ~iGk~a~n~~qEyv~k~~g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk-~W~r~gd~e----g~~pp~~d~nsPdm  131 (284)
T COG5197          57 FIGKDAFNQFQEYVNKATGNAASSQQISTYFQVSNRYVINKLKLILFPFLNK-NWQRIGDSE----GFLPPRDDVNSPDM  131 (284)
T ss_pred             HHhHHHHHHHHHHHHHhhcccccccceeEEEEechHhHHhhhheEEeecccc-hhhhccCCC----CCCCchhhcCCccc
Confidence            47999999999999999999997  899999999999999999999999999 799964443    59999999999999


Q ss_pred             ccchHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCChhhheeeccccccc
Q 029332          121 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGESYSQ  194 (195)
Q Consensus       121 YIPlMa~vTYILL~g~~~G~~g~FsPE~Lg~~as~al~~~~lEv~i~k~~~Y~l~-~~~~~~lDLvAy~GYKyV~  194 (195)
                      |||+|+|+|||||++..+|++|.|+||.||+.+|++++..++|+++.|++||+|. +...++||++||+|||||.
T Consensus       132 Y~P~M~fvtyILl~~~~~GL~g~F~PE~lg~~~s~~~a~v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~  206 (284)
T COG5197         132 YMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVP  206 (284)
T ss_pred             cchHHHHHHHHHHHHHHhhcccCCCHHHhhHHHHHHHHHHHHHHHHHHhceEEEeecccchhhhhhhhcccccHH
Confidence            9999999999999999999999999999999999999999999999999999999 5566799999999999984

>KOG3114 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=1.9e-07  Score=83.76  Aligned_cols=66  Identities=29%  Similarity=0.522  Sum_probs=49.1

Q ss_pred             HHHHhhhhhhcC--CCcceeeeChHHHHHHHhhhhccccccCCceeeecCCCCccCCCCCccCCCCCccccchHHHHHHH
Q 029332           54 EYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYV  131 (195)
Q Consensus        54 ~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DvNAPDLYIPlMa~vTYI  131 (195)
                      +.++..+ +|+.  -.|.|||||++-|++||+-.++|  ++  -.  .++.            -+.||||-|+|...|-|
T Consensus        66 qq~~~~~-~~~ti~yyq~fFdVDt~qV~~Rl~~SliP--~~--~~--~~~~------------~~~PDLYGPfWI~~TlV  126 (290)
T KOG3114|consen   66 QQVSDQL-SFFTIEYYQPFFDVDTAQVRKRLKESLIP--RN--YV--RDQI------------QDNPDLYGPFWITATLV  126 (290)
T ss_pred             ccccCCc-ccccHHhhccccCCCHHHHHHHHHHhcCC--cc--cc--cccc------------CCCccccccHHHHHHHH
Confidence            3333333 3554  78999999999999999999999  22  11  2332            37899999999999998


Q ss_pred             HHHHHHh
Q 029332          132 VLAGFTL  138 (195)
Q Consensus       132 LL~g~~~  138 (195)
                      -+.+...
T Consensus       127 f~l~~~g  133 (290)
T KOG3114|consen  127 FALAISG  133 (290)
T ss_pred             HHHHHcc
Confidence            8776653

>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain

Probab=89.58  E-value=0.66  Score=35.81  Aligned_cols=79  Identities=16%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             CCCCCccccchHHHHHHHHHHHHHhhhcCCCChh---------hh-HHHHHHH---HHHHHHHHHHHHHHHHHhCCCCCC
Q 029332          114 DINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE---------AL-NWLFIKG---LFGWFMQFMLLKVTLLSLGSGEAP  180 (195)
Q Consensus       114 DvNAPDLYIPlMa~vTYILL~g~~~G~~g~FsPE---------~L-g~~as~a---l~~~~lEv~i~k~~~Y~l~~~~~~  180 (195)
                      +.+.+|+|.+++++++.+............+.++         .. +......   ++.+++=..+++..+.+++ ++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~g-g~~~   96 (172)
T PF04893_consen   18 ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIAKLFG-GKGS   96 (172)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence            4578999999999999998887775555444443         11 1111111   2334445555555555565 6788


Q ss_pred             hhhheeecccccc
Q 029332          181 LLDVVAYAGESYS  193 (195)
Q Consensus       181 ~lDLvAy~GYKyV  193 (195)
                      .-|.++..||.++
T Consensus        97 ~~~~~~~~~ya~~  109 (172)
T PF04893_consen   97 FKETFSVVGYALI  109 (172)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887653

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00