Citrus Sinensis ID: 029362

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE
ccEEEccEEEEcccccEEEEEccEEEEEccccEEEEEEccccEEEEEccccccccEEEEEEEcccccccccHHHcHHHHHHHHHHEEcccEEEEEEEEEEEEcEEEEEccccEEEEEEEccccEEEEEEEccccEEEEEccccccEEEEEEccHHHHHHHHHHHHcccccccccEEEEccEEEEEEEccccccc
ccEEEEEEEEEccccEEEEEEEEEEEEEccccEEEEcccEEEEEEEEEccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEEccccEEEEEccccccEEEEEEccccEEEEEccccccEEEEEcccHHHHHHHHHHHHHHccccccHHHHHcccEEEEcccEEEccc
mktilssetmdipdgvKVKINAKVIevegprgklsrdfkhlnldfhlmtdeetgkrklkidawfgsrkTSAAIRTALSHvgnlitgvtKGYRYKMRFVYAhfpinasignnnKAIEIRNFlgekkvrkvdmldgvtvirsdkvkdelvldgndieLVSRSAALINQKCHVKNKDIRKFLDGIyvsekstilgee
mktilssetmdipdgvkVKINAKVIevegprgklsrdfkhlnldfhlmtdeetgkrklkidaWFGSRKTSAAIRtalshvgnlitgVTKGYRYKMRFVYAHFpinasignnnKAIEIRNFlgekkvrkvdmldgvtvirsdkvkdelvldGNDIELVSRSaalinqkchvknkdirkfldgiyvsekstilgee
MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE
**************GVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS*********
MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE*STI****
MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE
MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query194 2.2.26 [Sep-21-2011]
P49209194 60S ribosomal protein L9- yes no 1.0 1.0 0.835 1e-92
P30707193 60S ribosomal protein L9 N/A no 0.994 1.0 0.855 2e-92
Q9SZX9194 60S ribosomal protein L9- no no 1.0 1.0 0.819 3e-91
P49210190 60S ribosomal protein L9 yes no 0.958 0.978 0.815 2e-88
Q90YW0192 60S ribosomal protein L9 N/A no 0.984 0.994 0.582 1e-59
P51410192 60S ribosomal protein L9 yes no 0.963 0.973 0.578 4e-59
Q5IFJ7192 60S ribosomal protein L9 N/A no 0.963 0.973 0.584 5e-59
P32969192 60S ribosomal protein L9 yes no 0.963 0.973 0.578 7e-59
Q3SYR7192 60S ribosomal protein L9 yes no 0.963 0.973 0.578 8e-59
P17077192 60S ribosomal protein L9 yes no 0.963 0.973 0.578 8e-59
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3 Back     alignment and function desciption
 Score =  338 bits (868), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 162/194 (83%), Positives = 181/194 (93%)

Query: 1   MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MKTILSSETMDIPD V +K++AKVIEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
           D+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG + K+IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGVT++RS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKSTILGEE 194
           GIYVSEKS I+ EE
Sbjct: 181 GIYVSEKSKIVEEE 194

Arabidopsis thaliana (taxid: 3702)
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1 Back     alignment and function description
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3 Back     alignment and function description
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1 Back     alignment and function description
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2 Back     alignment and function description
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1 Back     alignment and function description
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1 Back     alignment and function description
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
449456337194 PREDICTED: 60S ribosomal protein L9-like 1.0 1.0 0.896 1e-97
307135913194 60S ribosomal protein l9 [Cucumis melo s 1.0 1.0 0.891 1e-97
255555849194 60S ribosomal protein L9, putative [Rici 1.0 1.0 0.891 2e-97
255564790194 60S ribosomal protein L9, putative [Rici 0.994 0.994 0.891 1e-96
255555845194 60S ribosomal protein L9, putative [Rici 1.0 1.0 0.871 4e-96
224115436193 predicted protein [Populus trichocarpa] 0.994 1.0 0.881 4e-95
224117728193 predicted protein [Populus trichocarpa] 0.994 1.0 0.881 7e-95
224061539193 predicted protein [Populus trichocarpa] 0.994 1.0 0.881 8e-95
449438739195 PREDICTED: 60S ribosomal protein L9-like 1.0 0.994 0.865 2e-94
351727100192 uncharacterized protein LOC100306058 [Gl 0.989 1.0 0.886 3e-94
>gi|449456337|ref|XP_004145906.1| PREDICTED: 60S ribosomal protein L9-like [Cucumis sativus] gi|449497261|ref|XP_004160355.1| PREDICTED: 60S ribosomal protein L9-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 174/194 (89%), Positives = 186/194 (95%)

Query: 1   MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MKTILSSETMDIPDGVK+K+NAK+IEVEGPRGKL R+FKHLNLDF L+TDE TGK+KLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHV NLITGVTKGYRYKMRFVYAHFPINASI N NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGV++IRS+KVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKSTILGEE 194
           GIYVSEK T++ EE
Sbjct: 181 GIYVSEKGTVVEEE 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|307135913|gb|ADN33776.1| 60S ribosomal protein l9 [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|255555849|ref|XP_002518960.1| 60S ribosomal protein L9, putative [Ricinus communis] gi|223541947|gb|EEF43493.1| 60S ribosomal protein L9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255564790|ref|XP_002523389.1| 60S ribosomal protein L9, putative [Ricinus communis] gi|223537339|gb|EEF38968.1| 60S ribosomal protein L9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255555845|ref|XP_002518958.1| 60S ribosomal protein L9, putative [Ricinus communis] gi|223541945|gb|EEF43491.1| 60S ribosomal protein L9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224115436|ref|XP_002317034.1| predicted protein [Populus trichocarpa] gi|118484523|gb|ABK94136.1| unknown [Populus trichocarpa] gi|222860099|gb|EEE97646.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117728|ref|XP_002317653.1| predicted protein [Populus trichocarpa] gi|222860718|gb|EEE98265.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061539|ref|XP_002300530.1| predicted protein [Populus trichocarpa] gi|224061545|ref|XP_002300533.1| predicted protein [Populus trichocarpa] gi|118481919|gb|ABK92894.1| unknown [Populus trichocarpa] gi|118484394|gb|ABK94074.1| unknown [Populus trichocarpa] gi|118486961|gb|ABK95313.1| unknown [Populus trichocarpa] gi|118488379|gb|ABK96007.1| unknown [Populus trichocarpa] gi|222847788|gb|EEE85335.1| predicted protein [Populus trichocarpa] gi|222847791|gb|EEE85338.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438739|ref|XP_004137145.1| PREDICTED: 60S ribosomal protein L9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351727100|ref|NP_001236893.1| uncharacterized protein LOC100306058 [Glycine max] gi|255627411|gb|ACU14050.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
TAIR|locus:2206965194 AT1G33120 [Arabidopsis thalian 1.0 1.0 0.835 1.7e-84
TAIR|locus:2196646194 PGY2 "PIGGYBACK2" [Arabidopsis 1.0 1.0 0.835 1.7e-84
TAIR|locus:2127661194 AT4G10450 [Arabidopsis thalian 1.0 1.0 0.819 5e-83
MGI|MGI:1298373192 Rpl9 "ribosomal protein L9" [M 0.963 0.973 0.578 1.3e-54
UNIPROTKB|Q3SYR7192 RPL9 "60S ribosomal protein L9 0.963 0.973 0.578 1.6e-54
UNIPROTKB|E2R149192 RPL9 "Uncharacterized protein" 0.963 0.973 0.578 2.1e-54
UNIPROTKB|P32969192 RPL9 "60S ribosomal protein L9 0.963 0.973 0.578 2.1e-54
UNIPROTKB|I3LP78192 RPL9 "Uncharacterized protein" 0.963 0.973 0.578 2.1e-54
RGD|62049192 Rpl9 "ribosomal protein L9" [R 0.963 0.973 0.578 2.1e-54
ZFIN|ZDB-GENE-030131-8646193 rpl9 "ribosomal protein L9" [D 0.984 0.989 0.567 5.5e-54
TAIR|locus:2206965 AT1G33120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 162/194 (83%), Positives = 181/194 (93%)

Query:     1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
             MKTILSSETMDIPD V +K++AKVIEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKI
Sbjct:     1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query:    61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
             D+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG + K+IEIRNF
Sbjct:    61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query:   121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
             LGEKKVRKV+MLDGVT++RS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct:   121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query:   181 GIYVSEKSTILGEE 194
             GIYVSEKS I+ EE
Sbjct:   181 GIYVSEKSKIVEEE 194
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=ISS
GO:0019843 "rRNA binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2196646 PGY2 "PIGGYBACK2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127661 AT4G10450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1298373 Rpl9 "ribosomal protein L9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYR7 RPL9 "60S ribosomal protein L9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R149 RPL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P32969 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LP78 RPL9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|62049 Rpl9 "ribosomal protein L9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8646 rpl9 "ribosomal protein L9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UX91RL6_SULSONo assigned EC number0.32650.89690.9613yesno
A6VH01RL6_METM7No assigned EC number0.36950.89170.9505yesno
A3DNC3RL6_STAMFNo assigned EC number0.39030.90720.9513yesno
C5A269RL6_THEGJNo assigned EC number0.37910.87110.9184yesno
Q975J6RL6_SULTONo assigned EC number0.33840.94320.9838yesno
P14030RL6_METVANo assigned EC number0.33510.88650.9450yesno
O26127RL6_METTHNo assigned EC number0.38040.87620.9604yesno
P49209RL91_ARATHNo assigned EC number0.83501.01.0yesno
Q5IFJ7RL9_MACFANo assigned EC number0.58420.96390.9739N/Ano
P05738RL9A_YEASTNo assigned EC number0.51040.95360.9685yesno
Q9HPB8RL6_HALSANo assigned EC number0.32400.86590.9438yesno
Q95Y90RL9_CAEELNo assigned EC number0.52350.95870.9841yesno
P51410RL9_MOUSENo assigned EC number0.57890.96390.9739yesno
O74905RL9B_SCHPONo assigned EC number0.50260.94320.9682yesno
Q9SZX9RL92_ARATHNo assigned EC number0.81951.01.0nono
B6YSN0RL6_THEONNo assigned EC number0.38120.87620.9239yesno
P54042RL6_METJANo assigned EC number0.36810.88140.9395yesno
Q9YF91RL6_AERPENo assigned EC number0.36410.88650.9450yesno
A0B9V4RL6_METTPNo assigned EC number0.37640.86080.9488yesno
A4FWA5RL6_METM5No assigned EC number0.3750.89170.9505yesno
B8D5V4RL6_DESK1No assigned EC number0.36750.91230.9619yesno
Q8PV34RL6_METMANo assigned EC number0.35710.88140.9715yesno
Q6LXD7RL6_METMPNo assigned EC number0.36950.89170.9505yesno
A2BMD5RL6_HYPBUNo assigned EC number0.43150.92780.9677yesno
Q2FSG5RL6_METHJNo assigned EC number0.36110.86080.9488yesno
A5UL72RL6_METS3No assigned EC number0.35550.87110.9494yesno
P50882RL9_DROMENo assigned EC number0.56700.97420.9947yesno
P49210RL9_ORYSJNo assigned EC number0.81570.95870.9789yesno
Q54XI5RL9_DICDINo assigned EC number0.51570.95360.9840yesno
Q963B7RL9_SPOFRNo assigned EC number0.55780.95360.9736N/Ano
A9A9P8RL6_METM6No assigned EC number0.36950.89170.9505yesno
P30707RL9_PEANo assigned EC number0.85560.99481.0N/Ano
Q5R9Q7RL9_PONABNo assigned EC number0.57890.96390.9739yesno
A6UQ60RL6_METVSNo assigned EC number0.33510.88650.9450yesno
Q18GG5RL6_HALWDNo assigned EC number0.35290.88650.9450yesno
Q3SYR7RL9_BOVINNo assigned EC number0.57890.96390.9739yesno
P17077RL9_RATNo assigned EC number0.57890.96390.9739yesno
A8AC04RL6_IGNH4No assigned EC number0.40110.81950.8548yesno
O59433RL6_PYRHONo assigned EC number0.37910.87110.9184yesno
Q8U015RL6_PYRFUNo assigned EC number0.39560.87110.9184yesno
Q9V1V1RL6_PYRABNo assigned EC number0.39010.87110.9184yesno
Q5JJG4RL6_PYRKONo assigned EC number0.37910.87110.9184yesno
O05637RL6_SULACNo assigned EC number0.32460.92260.9470yesno
P32969RL9_HUMANNo assigned EC number0.57890.96390.9739yesno
P51401RL9B_YEASTNo assigned EC number0.51290.95870.9738yesno
Q90YW0RL9_ICTPUNo assigned EC number0.58240.98450.9947N/Ano
Q0W1X2RL6_UNCMANo assigned EC number0.33880.86590.9491yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00111242
SubName- Full=Putative uncharacterized protein; (194 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_1200093
SubName- Full=Putative uncharacterized protein; (297 aa)
• •••   0.495
estExt_Genewise1_v1.C_LG_XIV3958
SubName- Full=Putative uncharacterized protein; (298 aa)
• •••   0.495
grail3.0142002402
SubName- Full=Putative uncharacterized protein; (297 aa)
• •••   0.479
estExt_fgenesh4_pg.C_LG_VII0552
SubName- Full=Putative uncharacterized protein; (146 aa)
•  •••  0.478
estExt_fgenesh4_pm.C_LG_III0216
SubName- Full=Putative uncharacterized protein; (146 aa)
•  •••  0.477
estExt_fgenesh4_pg.C_LG_V0222
SubName- Full=Putative uncharacterized protein; (147 aa)
•  •••  0.467
estExt_fgenesh4_kg.C_LG_II0054
SubName- Full=Putative uncharacterized protein; (159 aa)
•  •    0.461
grail3.0040004901
SubName- Full=Putative uncharacterized protein; (159 aa)
•  •    0.458
estExt_Genewise1_v1.C_LG_XVIII3410
hypothetical protein (160 aa)
•  •    0.452
gw1.1845.1.1
60S ribosomal protein L4/L1 (RPL4D) (408 aa)
•  •• • 0.427

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
PTZ00027190 PTZ00027, PTZ00027, 60S ribosomal protein L6; Prov 9e-85
PTZ00179189 PTZ00179, PTZ00179, 60S ribosomal protein L9; Prov 1e-64
PRK05518180 PRK05518, rpl6p, 50S ribosomal protein L6P; Review 1e-50
TIGR03653170 TIGR03653, arch_L6P, archaeal ribosomal protein L6 2e-45
COG0097178 COG0097, RplF, Ribosomal protein L6P/L9E [Translat 1e-37
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 2e-11
TIGR03654175 TIGR03654, L6_bact, ribosomal protein L6, bacteria 1e-08
PRK05498178 PRK05498, rplF, 50S ribosomal protein L6; Validate 6e-08
pfam0034776 pfam00347, Ribosomal_L6, Ribosomal protein L6 2e-04
CHL00140178 CHL00140, rpl6, ribosomal protein L6; Validated 0.002
>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional Back     alignment and domain information 
 Score =  248 bits (634), Expect = 9e-85
 Identities = 109/194 (56%), Positives = 143/194 (73%), Gaps = 4/194 (2%)

Query: 1   MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MKTI SSE + IP+GV V + ++ + V G  G+L+R F+HL +D  L  D     + +K+
Sbjct: 1   MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKD----GKYIKV 56

Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
           + WFG+    A IRT  SH+ N++TGVTK ++YKMR VYAHFPIN++I +N K IEIRNF
Sbjct: 57  EMWFGTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNF 116

Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEK+VR V ML GV V +S+ VKDE+++ G D+ELVSRSAALI+Q   V+NKDIRKFLD
Sbjct: 117 LGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLVRNKDIRKFLD 176

Query: 181 GIYVSEKSTILGEE 194
           GIYVSEK T+  +E
Sbjct: 177 GIYVSEKGTVDKDE 190

Length = 190
>gnl|CDD|140206 PTZ00179, PTZ00179, 60S ribosomal protein L9; Provisional Back     alignment and domain information
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>gnl|CDD|234296 TIGR03653, arch_L6P, archaeal ribosomal protein L6P Back     alignment and domain information
>gnl|CDD|223175 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information
>gnl|CDD|213843 TIGR03654, L6_bact, ribosomal protein L6, bacterial type Back     alignment and domain information
>gnl|CDD|235495 PRK05498, rplF, 50S ribosomal protein L6; Validated Back     alignment and domain information
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6 Back     alignment and domain information
>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 194
PTZ00179189 60S ribosomal protein L9; Provisional 100.0
PRK05518180 rpl6p 50S ribosomal protein L6P; Reviewed 100.0
PTZ00027190 60S ribosomal protein L6; Provisional 100.0
TIGR03653170 arch_L6P archaeal ribosomal protein L6P. Members o 100.0
COG0097178 RplF Ribosomal protein L6P/L9E [Translation, ribos 100.0
CHL00140178 rpl6 ribosomal protein L6; Validated 100.0
TIGR03654175 L6_bact ribosomal protein L6, bacterial type. 100.0
PRK05498178 rplF 50S ribosomal protein L6; Validated 100.0
KOG3254211 consensus Mitochondrial/chloroplast ribosomal prot 100.0
KOG3255179 consensus 60S ribosomal protein L9 [Translation, r 99.95
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 99.78
PF0034777 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0 98.1
>PTZ00179 60S ribosomal protein L9; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-66  Score=428.40  Aligned_cols=184  Identities=54%  Similarity=0.927  Sum_probs=170.5

Q ss_pred             ecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHHhhh
Q 029362            4 ILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNL   83 (194)
Q Consensus         4 ~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nm   83 (194)
                      ++..+||.||+||+|+++++.|+|+||+|+|+++|++.++.+.+..    ++++|.+++|.++++.+|+|||+||||+||
T Consensus         3 ~~~~~pI~IP~~V~V~i~~~~ItVkGpkG~Ls~~~~~~~~~i~i~~----~~~~I~v~~~~~~kk~~al~Gt~rslI~NM   78 (189)
T PTZ00179          3 IKSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNK----KNRTFTAVRWFGSKIPNSTINTALSHVRNM   78 (189)
T ss_pred             ccccccEeCCCCCEEEEeCCEEEEECCCcEEEEEcCCCCcEEEEEe----cCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            4567799999999999999999999999999999999655555434    357899999999999999999999999999


Q ss_pred             eeeeccceEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCC--CCcEEEEEeCcHhHHHHHH
Q 029362           84 ITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDK--VKDELVLDGNDIELVSRSA  161 (194)
Q Consensus        84 I~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~--~k~~i~l~G~Dkq~Vgq~A  161 (194)
                      |+|||+||+++|+++|+||||||++  +|+.|.|+|+||||||+.++||+|+++++++|  .|++|+|+|+|||+|||||
T Consensus        79 I~GVt~GF~k~L~ivgvgyp~ra~v--~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~DKq~Vgq~A  156 (189)
T PTZ00179         79 ITGVTKGFRFKVRFAYAHFPISVSV--ENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGNDLEQVSREA  156 (189)
T ss_pred             hhhhcCCEEEEEEEEEeCcceEEEE--cCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCCHHHHHHHH
Confidence            9999999999999999999999999  89999999999999999999999999999965  3579999999999999999


Q ss_pred             HHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029362          162 ALINQKCHVKNKDIRKFLDGIYVSEKSTILGE  193 (194)
Q Consensus       162 A~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~~~  193 (194)
                      |+|++.|++|+||+|+|||||||++|++...+
T Consensus       157 A~i~~~~~~~~~d~r~f~dgiy~~~k~~~~~~  188 (189)
T PTZ00179        157 AVMHQLCLVKKKDIRKFLDGIYVQTKTNVEAE  188 (189)
T ss_pred             HHHHHhhcccCCCccEeecCEEEEEeeccccc
Confidence            99999999999999999999999999966544

>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed Back     alignment and domain information
>PTZ00027 60S ribosomal protein L6; Provisional Back     alignment and domain information
>TIGR03653 arch_L6P archaeal ribosomal protein L6P Back     alignment and domain information
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00140 rpl6 ribosomal protein L6; Validated Back     alignment and domain information
>TIGR03654 L6_bact ribosomal protein L6, bacterial type Back     alignment and domain information
>PRK05498 rplF 50S ribosomal protein L6; Validated Back     alignment and domain information
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
3izr_F190 Localization Of The Large Subunit Ribosomal Protein 2e-89
2zkr_e192 Structure Of A Mammalian Ribosomal 60s Subunit With 6e-60
1s1i_H191 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-49
3zf7_y189 High-resolution Cryo-electron Microscopy Structure 1e-48
3jyw_H179 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-48
4a17_E188 T.Thermophila 60s Ribosomal Subunit In Complex With 8e-43
3j21_F184 Promiscuous Behavior Of Proteins In Archaeal Riboso 9e-28
3g4s_E172 Co-Crystal Structure Of Tiamulin Bound To The Large 2e-21
1ffk_1177 Crystal Structure Of The Large Ribosomal Subunit Fr 3e-21
1s72_E178 Refined Crystal Structure Of The Haloarcula Marismo 3e-21
2cql_A100 Solution Structure Of The N-Terminal Domain Of Huma 2e-19
2gya_E167 Structure Of The 50s Subunit Of A Pre-Translocation 1e-04
1p85_E176 Real Space Refined Coordinates Of The 50s Subunit F 1e-04
1vs6_G177 Crystal Structure Of The Bacterial Ribosome From Es 1e-04
>pdb|3IZR|F Chain F, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  324 bits (831), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/190 (81%), Positives = 175/190 (92%), Gaps = 4/190 (2%)
Query: 1   MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MKTIL+SETM+IP+GV V++ AKV+ VEGPRGKL+R+FKHLNLDF L+     G RKL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQV 56
Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
           DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N AIEIRNF
Sbjct: 57  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDML+GVT++RS+KVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 176
Query: 181 GIYVSEKSTI 190
           GIYVS+K TI
Sbjct: 177 GIYVSDKGTI 186
>pdb|2ZKR|EE Chain e, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 192 Back     alignment and structure
>pdb|1S1I|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 191 Back     alignment and structure
>pdb|3ZF7|YY Chain y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 189 Back     alignment and structure
>pdb|3JYW|H Chain H, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 179 Back     alignment and structure
>pdb|4A17|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 188 Back     alignment and structure
>pdb|3J21|F Chain F, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 184 Back     alignment and structure
>pdb|3G4S|E Chain E, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 172 Back     alignment and structure
>pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|1S72|E Chain E, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 178 Back     alignment and structure
>pdb|2CQL|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Ribosomal Protein L9 Length = 100 Back     alignment and structure
>pdb|2GYA|E Chain E, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 167 Back     alignment and structure
>pdb|1P85|E Chain E, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 176 Back     alignment and structure
>pdb|1VS6|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 177 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 5e-84
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 2e-82
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 6e-82
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 6e-80
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 3e-72
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 3e-30
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 9e-08
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 4e-07
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 9e-07
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 2e-06
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 2e-06
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 2e-06
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191 Back     alignment and structure
 Score =  245 bits (628), Expect = 5e-84
 Identities = 98/195 (50%), Positives = 137/195 (70%), Gaps = 7/195 (3%)

Query: 1   MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
           MK I + + +++P+GV V I +++++V GPRG L+++ KH+++ F      +   + +K+
Sbjct: 1   MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55

Query: 61  DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASI--GNNNKAIEIR 118
               G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+R
Sbjct: 56  AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115

Query: 119 NFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKF 178
           NFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKF
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKF 175

Query: 179 LDGIYVSEKSTILGE 193
           LDGIYVS K  I  +
Sbjct: 176 LDGIYVSHKGFITED 190
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188 Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192 Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178 Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Length = 100 Back     alignment and structure
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 223 Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Length = 176 Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Length = 177 Back     alignment and structure
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Length = 212 Back     alignment and structure
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Length = 180 Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Length = 185 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 100.0
3iz5_F190 60S ribosomal protein L9 (L6P); eukaryotic ribosom 100.0
4a17_E188 RPL9, 60S ribosomal protein L9; eukaryotic ribosom 100.0
2zkr_e192 60S ribosomal protein L9; protein-RNA complex, 60S 100.0
3j21_F184 50S ribosomal protein L6P; archaea, archaeal, KINK 100.0
1vq8_E178 50S ribosomal protein L6P; ribosome 50S, protein-p 100.0
3v2d_H180 50S ribosomal protein L6; ribosome associated inhi 100.0
1rl6_A177 Protein (ribosomal protein L6); RNA-binding protei 100.0
1nkw_E212 50S ribosomal protein L6; ribosome, large subunit, 100.0
3r8s_G176 50S ribosomal protein L6; protein biosynthesis, RN 100.0
3bbo_I223 Ribosomal protein L6; large ribosomal subunit, spi 100.0
2zjr_E185 50S ribosomal protein L6; ribosome, large ribosoma 100.0
2cql_A100 OK/SW-CL.103, 60S ribosomal protein L9; N-terminal 99.95
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H Back     alignment and structure
Probab=100.00  E-value=8.1e-73  Score=465.56  Aligned_cols=188  Identities=52%  Similarity=0.871  Sum_probs=179.1

Q ss_pred             CceecceeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEccccccCCcEEEEEeccCChhhhhHHHhHHHHH
Q 029362            1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV   80 (194)
Q Consensus         1 M~~~~~~~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~Gt~rsli   80 (194)
                      |++++.++||.||+||+|+++++.|+|+||+|+|+++|+|..+++++..     ++.+.|++|+++|+++|+|||+||||
T Consensus         1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~-----~~~l~v~~~~~~kk~~a~~gt~rsli   75 (191)
T 3u5e_H            1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVN-----NQLIKVAVHNGGRKHVAALRTVKSLV   75 (191)
T ss_dssp             CCEEEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEE-----TTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred             CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEec-----CCeEEEEECCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998667776322     58899999999999999999999999


Q ss_pred             hhheeeeccceEEEEEEEEEEecceeEe--cCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHH
Q 029362           81 GNLITGVTKGYRYKMRFVYAHFPINASI--GNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVS  158 (194)
Q Consensus        81 ~NmI~GVt~Gf~~~L~lvGvGypira~~--~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vg  158 (194)
                      +|||+|||+||+|+|+++|+||||+|++  +++|+.|+|+||||||||+.++||+||+|+++++++|+|+|+|+|||+||
T Consensus        76 ~NmI~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vg  155 (191)
T 3u5e_H           76 DNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVS  155 (191)
T ss_dssp             HHHHHHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHH
T ss_pred             HhheeeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHH
Confidence            9999999999999999999999998988  77899999999999999999999999999999977799999999999999


Q ss_pred             HHHHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029362          159 RSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGE  193 (194)
Q Consensus       159 q~AA~Ir~~~~~Kgkd~R~f~DGiyv~ek~~~~~~  193 (194)
                      |+||+||++|++|+||+|+|||||||+||++++++
T Consensus       156 q~AA~Irq~~~vk~kD~R~FlDGiyv~ek~~~~~~  190 (191)
T 3u5e_H          156 QNAADLQQICRVRNKDIRKFLDGIYVSHKGFITED  190 (191)
T ss_dssp             HHHHHHHHTTCCCSSCTTTCCCEEEEEEEEESSSC
T ss_pred             HHHHHHHhhcccCCCcccEeecCeEEEEeeEEEec
Confidence            99999999999999999999999999999999876
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Back     alignment and structure
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Back     alignment and structure
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Back     alignment and structure
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Back     alignment and structure
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Back     alignment and structure
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Back     alignment and structure
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Back     alignment and structure
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 194
d1vqoe293 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeo 6e-46
d2cqla187 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Ho 3e-22
d2zjre278 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococc 2e-13
d1vqoe179 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon 2e-13
d2j01h171 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus 3e-13
d2qamg181 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherich 1e-12
d1rl6a175 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus 2e-12
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 93 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  144 bits (365), Expect = 6e-46
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 91  YRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLD 150
           + Y M   Y+HFP+  ++  +   + I NFLGEK  R+  +     V       +EL + 
Sbjct: 1   WEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVEID---GEELTVS 55

Query: 151 GNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
           G DIE V ++AA I Q   + +KD+R F DG+Y++ K
Sbjct: 56  GPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 92
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 78 Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 79 Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 71 Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 81 Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
d1vqoe293 Ribosomal protein L6 {Archaeon Haloarcula marismor 100.0
d1rl6a289 Ribosomal protein L6 {Bacillus stearothermophilus 99.96
d2j01h289 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.96
d2zjre190 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.96
d2qamg295 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.96
d2cqla187 Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 99.95
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 99.92
d2qamg181 Ribosomal protein L6 {Escherichia coli [TaxId: 562 99.92
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 99.92
d2zjre278 Ribosomal protein L6 {Deinococcus radiodurans [Tax 99.91
d2j01h171 Ribosomal protein L6 {Thermus thermophilus [TaxId: 99.87
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.1e-37  Score=226.00  Aligned_cols=93  Identities=37%  Similarity=0.689  Sum_probs=90.7

Q ss_pred             eEEEEEEEEEEecceeEecCCCCeEEEecccCceeeEEEeCCCCeEEEeCCCCCcEEEEEeCcHhHHHHHHHHHhccccc
Q 029362           91 YRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHV  170 (194)
Q Consensus        91 f~~~L~lvGvGypira~~~~~g~~l~l~n~LG~sh~i~~~iP~gv~v~~~~~~k~~i~l~G~Dkq~Vgq~AA~Ir~~~~~  170 (194)
                      |+|+|+++++||||.+.+  +|+.+.++||||+++|+.++||+|++|++.+   ++|+|+|+|+|+|||+||+|+++|++
T Consensus         1 f~Ykmk~vyaHFPi~v~v--~g~~v~I~NFlGEK~~R~~~i~~gv~v~v~~---deiiv~G~d~E~V~qtAA~Ieq~t~v   75 (93)
T d1vqoe2           1 WEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG---EELTVSGPDIEAVGQTAADIEQLTRI   75 (93)
T ss_dssp             EEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET---TEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEEEEEeCCeEEEE--cCCEEEEEeccCCceeEEEEecCCCeeEEcC---CEEEEEcCCHHHHHHHHHHHHHhhcc
Confidence            899999999999999999  7999999999999999999999999999986   89999999999999999999999999


Q ss_pred             CCCceeeeeceEEEeeee
Q 029362          171 KNKDIRKFLDGIYVSEKS  188 (194)
Q Consensus       171 Kgkd~R~f~DGiyv~ek~  188 (194)
                      |+||+|+|||||||+||+
T Consensus        76 k~kD~R~FlDGIYv~eKp   93 (93)
T d1vqoe2          76 NDKDVRVFQDGVYITRKP   93 (93)
T ss_dssp             SSSCTTTCCCEEEEEECC
T ss_pred             CCCCccEeecCEEEEecC
Confidence            999999999999999985
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure