Citrus Sinensis ID: 029363

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPMPDPKTN
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHcHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccc
Coil and Loop (DISEMBL)
matpqmlsslkysdsltVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMkienpakistkksktkKIDRVETSLKEssrdlslfkfksGAVVALVLFVVFGLLNSlfegkvvaklpfkpfgivmkmshrglqgddatdCSMAFLYFLCSISIRTNLQkflgfspprgaaaggglfpmpdpktn
Flexible Loop (DISEMBL)
matpqmlsslkysdSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKkletmkienpakistkksktkkidrvetslkessrdlslfkfKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRgaaaggglfpmpdpktn
Low Complexity Region (SEG)
MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAkistkksktkkiDRVETSLKESSRDLSLFKFKSgavvalvlfvvfgllNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPMPDPKTN
Disordered region (IsUnstruct)
***********YSDSLTVVGISFCTAIICESISWLLIYRTNSYKTL*********************************************LSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFS********************
Disordered Region (DISOPRED)
*********LKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKT**************************************************KFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGF*********************
Disordered Region (DISEMBL)
********SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI*************ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPMPDPKTN
Disordered Region (DISPRO)
***PQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIE******TKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPR*****************
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSxxxxxxxxxxxxxxxxxxxxxNPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPMPDPKTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q5I0H4	188	Transmembrane and coiled-	yes	no	0.932	0.962	0.464	3e-39
Q5R9B0	188	Transmembrane and coiled-	yes	no	0.932	0.962	0.464	3e-39
C5HGF3	188	Transmembrane and coiled-	yes	no	0.932	0.962	0.464	3e-39
Q921L3	188	Transmembrane and coiled-	yes	no	0.932	0.962	0.464	3e-39
Q9UM00	188	Transmembrane and coiled-	yes	no	0.932	0.962	0.464	3e-39
Q3T0N3	188	Transmembrane and coiled-	yes	no	0.932	0.962	0.464	3e-39
Q54TU8	186	Transmembrane and coiled-	yes	no	0.896	0.935	0.397	9e-34

>sp|Q5I0H4|TMCO1_RAT Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 9   SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
           S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59

Query: 69  STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
           S  + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF
Sbjct: 60  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
            P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A    G F  
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query: 189 PDP 191
           P P
Sbjct: 180 PPP 182

Rattus norvegicus (taxid: 10116)

>sp|Q5R9B0|TMCO1_PONAB Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 9   SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
           S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59

Query: 69  STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
           S  + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF
Sbjct: 60  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
            P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A    G F  
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query: 189 PDP 191
           P P
Sbjct: 180 PPP 182

Pongo abelii (taxid: 9601)

>sp|C5HGF3|TMCO1_PIG Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 9   SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
           S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59

Query: 69  STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
           S  + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF
Sbjct: 60  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
            P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A    G F  
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query: 189 PDP 191
           P P
Sbjct: 180 PPP 182

Sus scrofa (taxid: 9823)

>sp|Q921L3|TMCO1_MOUSE Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 9   SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
           S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59

Query: 69  STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
           S  + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF
Sbjct: 60  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
            P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A    G F  
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query: 189 PDP 191
           P P
Sbjct: 180 PPP 182

Mus musculus (taxid: 10090)

>sp|Q9UM00|TMCO1_HUMAN Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 9   SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
           S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59

Query: 69  STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
           S  + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF
Sbjct: 60  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
            P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A    G F  
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query: 189 PDP 191
           P P
Sbjct: 180 PPP 182

Homo sapiens (taxid: 9606)

>sp|Q3T0N3|TMCO1_BOVIN Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 9   SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKI 68
           S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITE-- 59

Query: 69  STKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPF 128
           S  + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF
Sbjct: 60  SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query: 129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFPM 188
            P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A    G F  
Sbjct: 120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query: 189 PDP 191
           P P
Sbjct: 180 PPP 182

Bos taurus (taxid: 9913)

>sp|Q54TU8|TMCO1_DICDI Transmembrane and coiled-coil domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=tmco1 PE=2 SV=1

 Score =  143 bits (360), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 111/176 (63%), Gaps = 2/176 (1%)

Query: 14  DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM--KIENPAKISTK 71
           + L ++ +S  +++  E +SWLL+YRT +YK  K++ID+   +L+ +  +    + +S K
Sbjct: 5   EVLFILFVSIASSLASEGVSWLLVYRTENYKRGKANIDRLQIQLDKLVDQESETSSLSKK 64

Query: 72  KSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPF 131
            +K KKI+++E  LK ++++LS  K KS   VA+ +  +F  LN +F+G VV KLPF P 
Sbjct: 65  GNKDKKIEKIEEQLKIANKELSFSKMKSMFAVAISMIALFSYLNRIFDGVVVCKLPFVPI 124

Query: 132 GIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFP 187
           G +  +SHR + GDD TDCSM F+Y +CS+ IR N+Q  LG +PP+   A     P
Sbjct: 125 GFLQGISHRTIAGDDYTDCSMTFIYAICSMFIRNNIQLILGTAPPKTKQANPWALP 180

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
255579029	192	Transmembrane and coiled-coil domains pr	0.989	1.0	0.881	7e-86
413968562	194	transmembrane and coiled-coil domains pr	0.994	0.994	0.810	1e-83
449437555	191	PREDICTED: transmembrane and coiled-coil	0.984	1.0	0.860	1e-83
15240119	196	uncharacterized protein [Arabidopsis tha	1.0	0.989	0.841	2e-82
225441508	193	PREDICTED: transmembrane and coiled-coil	0.994	1.0	0.840	3e-82
297806685	196	hypothetical protein ARALYDRAFT_908596 [	1.0	0.989	0.841	3e-82
21554161	196	unknown [Arabidopsis thaliana]	1.0	0.989	0.836	9e-82
357508575	189	Transmembrane and coiled-coil domain-con	0.974	1.0	0.855	4e-81
388495454	189	unknown [Medicago truncatula]	0.974	1.0	0.850	1e-80
388491912	189	unknown [Lotus japonicus]	0.974	1.0	0.850	1e-80

>gi|255579029|ref|XP_002530366.1| Transmembrane and coiled-coil domains protein, putative [Ricinus communis] gi|223530113|gb|EEF32027.1| Transmembrane and coiled-coil domains protein, putative [Ricinus communis]

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 171/194 (88%), Positives = 180/194 (92%), Gaps = 2/194 (1%)

Query: 1   MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM 60
           MATPQ LSS KY+DSLTVVGIS CTA++CE+ISW+LIYRTNSY++LKSSIDKASKKLETM
Sbjct: 1   MATPQFLSSFKYADSLTVVGISMCTAVVCEAISWILIYRTNSYRSLKSSIDKASKKLETM 60

Query: 61  KIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K +   KI TKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLF+VFGLLNSLFEG
Sbjct: 61  KTDT-TKIITKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFIVFGLLNSLFEG 119

Query: 121 KVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA 180
           KVVAKLPF P  IV KMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG A
Sbjct: 120 KVVAKLPFTPIAIVRKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG-A 178

Query: 181 AGGGLFPMPDPKTN 194
           AG GLFPMPDPKTN
Sbjct: 179 AGAGLFPMPDPKTN 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413968562|gb|AFW90618.1| transmembrane and coiled-coil domains protein [Solanum tuberosum]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/195 (81%), Positives = 172/195 (88%), Gaps = 2/195 (1%)

Query: 1   MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM 60
           MA     S+ KYSDSLT+VGIS CTAI+CE+IS+LLIYRT SYK+LKS+IDKASKKLETM
Sbjct: 1   MAAAGFFSNTKYSDSLTLVGISICTAIVCEAISYLLIYRTTSYKSLKSTIDKASKKLETM 60

Query: 61  KIENPA-KISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFE 119
           K + P   + TKKSKTKKIDRVETSLKES+RDLSLFKFKSG VVA+VLF+VFG LNSLFE
Sbjct: 61  KTQEPVPSVLTKKSKTKKIDRVETSLKESTRDLSLFKFKSGFVVAVVLFMVFGFLNSLFE 120

Query: 120 GKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGA 179
           GKVVAKLPF PF +V KMSHRGL GDD TDCSMAFLYFLCSISIRTNLQKFLGFSPPRG 
Sbjct: 121 GKVVAKLPFIPFRLVQKMSHRGLPGDDMTDCSMAFLYFLCSISIRTNLQKFLGFSPPRG- 179

Query: 180 AAGGGLFPMPDPKTN 194
           +AG GLFPMPDPKTN
Sbjct: 180 SAGAGLFPMPDPKTN 194

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437555|ref|XP_004136557.1| PREDICTED: transmembrane and coiled-coil domains protein 1-like [Cucumis sativus] gi|449518535|ref|XP_004166297.1| PREDICTED: transmembrane and coiled-coil domains protein 1-like [Cucumis sativus]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/194 (86%), Positives = 182/194 (93%), Gaps = 3/194 (1%)

Query: 1   MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM 60
           MAT  + SS +YSDSL+VVGIS CTA+ICE+ISW+LIYRTNSYKTL+SSIDKA+KKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K ++ +KI+ KKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG
Sbjct: 61  KTDS-SKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 119

Query: 121 KVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA 180
           KVVAKLPFKPFG+VMKMSHRGLQGDD TDC+MAFLYFLCSISIRTNLQKFLGFSPPRG  
Sbjct: 120 KVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRG-- 177

Query: 181 AGGGLFPMPDPKTN 194
           AG GLFPMPDPKTN
Sbjct: 178 AGAGLFPMPDPKTN 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240119|ref|NP_196284.1| uncharacterized protein [Arabidopsis thaliana] gi|10178122|dbj|BAB11415.1| unnamed protein product [Arabidopsis thaliana] gi|14532446|gb|AAK63951.1| AT5g06660/F15M7_19 [Arabidopsis thaliana] gi|16974515|gb|AAL31167.1| AT5g06660/F15M7_19 [Arabidopsis thaliana] gi|332003664|gb|AED91047.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/196 (84%), Positives = 181/196 (92%), Gaps = 2/196 (1%)

Query: 1   MATP-QMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59
           MAT   + +S KY+DSLTVVGISFCTA++CE+ISW+LIYRT+SYK+LKSSIDKASKKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 60  MKIENPA-KISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 118
           MK +NP+ K++ KKSKTKKIDRVE+SLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 119 EGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG 178
           EGKVVAKLPF P  IV KMSHRGL+GDD+TDCSMAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 179 AAAGGGLFPMPDPKTN 194
           AA  GGLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441508|ref|XP_002280441.1| PREDICTED: transmembrane and coiled-coil domains protein 1 [Vitis vinifera] gi|297739810|emb|CBI29992.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/194 (84%), Positives = 172/194 (88%), Gaps = 1/194 (0%)

Query: 1   MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM 60
           MA   +LS  KYSDSL VVGIS CTAIICE+ISWLLIYRT SYKTL+SSID+A+KKLETM
Sbjct: 1   MAPSALLSGSKYSDSLAVVGISICTAIICEAISWLLIYRTTSYKTLRSSIDRAAKKLETM 60

Query: 61  KIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K  + A+  TKKSKTKK+DRVETSLKESSRDLSLFKFKSGAVVALVLF VFGLLNSLFEG
Sbjct: 61  KTTSDAQKFTKKSKTKKMDRVETSLKESSRDLSLFKFKSGAVVALVLFAVFGLLNSLFEG 120

Query: 121 KVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA 180
           K VAKLPF P  IVMKMSHRGL G+D TDCSMAFLYFLCSISIRTNLQKFLGFSPPRG A
Sbjct: 121 KSVAKLPFVPISIVMKMSHRGLNGNDPTDCSMAFLYFLCSISIRTNLQKFLGFSPPRG-A 179

Query: 181 AGGGLFPMPDPKTN 194
           AG GLFPMPDPKTN
Sbjct: 180 AGAGLFPMPDPKTN 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806685|ref|XP_002871226.1| hypothetical protein ARALYDRAFT_908596 [Arabidopsis lyrata subsp. lyrata] gi|297317063|gb|EFH47485.1| hypothetical protein ARALYDRAFT_908596 [Arabidopsis lyrata subsp. lyrata]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 165/196 (84%), Positives = 181/196 (92%), Gaps = 2/196 (1%)

Query: 1   MATP-QMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59
           MAT   + +S KY+DSLTVVGISFCTA++CE+ISW+LIYRT+SYK+LKSSIDKASKKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 60  MKIENPA-KISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 118
           MK +NP+ K++ KKSKTKKIDRVE+SLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLAIKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 119 EGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG 178
           EGKVVAKLPF P  IV KMSHRGL+GDD+TDCSMAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 179 AAAGGGLFPMPDPKTN 194
           AA  GGLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554161|gb|AAM63240.1| unknown [Arabidopsis thaliana]

 Score =  308 bits (788), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 164/196 (83%), Positives = 180/196 (91%), Gaps = 2/196 (1%)

Query: 1   MATP-QMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59
           MAT   + +S KY+DSLTVVGIS CTA++CE+ISW+LIYRT+SYK+LKSSIDKASKKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISLCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 60  MKIENPA-KISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 118
           MK +NP+ K++ KKSKTKKIDRVE+SLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 119 EGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG 178
           EGKVVAKLPF P  IV KMSHRGL+GDD+TDCSMAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 179 AAAGGGLFPMPDPKTN 194
           AA  GGLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508575|ref|XP_003624576.1| Transmembrane and coiled-coil domain-containing protein [Medicago truncatula] gi|217071096|gb|ACJ83908.1| unknown [Medicago truncatula] gi|355499591|gb|AES80794.1| Transmembrane and coiled-coil domain-containing protein [Medicago truncatula] gi|388495052|gb|AFK35592.1| unknown [Medicago truncatula]

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/194 (85%), Positives = 177/194 (91%), Gaps = 5/194 (2%)

Query: 1   MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM 60
           MA P   S  KYSD LTVVGISFCTAI+CE+ISW+LIYRTNSYK L+SSIDKASKKLETM
Sbjct: 1   MAYP--FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETM 58

Query: 61  KIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K ++  KI+ KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEG
Sbjct: 59  KTDS-NKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEG 117

Query: 121 KVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA 180
           KVVAKLPFKPFG+VMKMSHRGLQG+D TDCSMAFLYFLCSISIRTNLQKFLGF+PPRG  
Sbjct: 118 KVVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRG-- 175

Query: 181 AGGGLFPMPDPKTN 194
           AG GLFPMPDPKT+
Sbjct: 176 AGAGLFPMPDPKTS 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495454|gb|AFK35793.1| unknown [Medicago truncatula]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/194 (85%), Positives = 176/194 (90%), Gaps = 5/194 (2%)

Query: 1   MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM 60
           MA P   S  KYSD LTVVGISFCTAI+CE+ISW+LIYRTNSYK L+SSIDKASKKLETM
Sbjct: 1   MAYP--FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETM 58

Query: 61  KIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K ++  KI+ KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEG
Sbjct: 59  KTDS-NKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEG 117

Query: 121 KVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA 180
           KVVAKLPFKPFG+VMKMSHRGLQG+D TDCSMAFLYFLCSISIRTNLQKFLGF+PPRG  
Sbjct: 118 KVVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRG-- 175

Query: 181 AGGGLFPMPDPKTN 194
           AG G FPMPDPKT+
Sbjct: 176 AGAGFFPMPDPKTS 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491912|gb|AFK34022.1| unknown [Lotus japonicus]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/194 (85%), Positives = 177/194 (91%), Gaps = 5/194 (2%)

Query: 1   MATPQMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM 60
           MA P   S  KYSD LTVVGISFCTAI+CE+ISW+LIYRTNSYK ++SSIDKASKKLETM
Sbjct: 1   MAYP--FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNIRSSIDKASKKLETM 58

Query: 61  KIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEG 120
           K ++  KI+ KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEG
Sbjct: 59  KTDS-QKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEG 117

Query: 121 KVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA 180
           KVVAKLPFKPFG+VMKMSHRGLQG D TDCSMAFLYFLCSISIRTNLQKFLGF+PPRGA+
Sbjct: 118 KVVAKLPFKPFGLVMKMSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAS 177

Query: 181 AGGGLFPMPDPKTN 194
           A  GLFPMPDPKT+
Sbjct: 178 A--GLFPMPDPKTS 189

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2144173	196	AT5G06660 "AT5G06660" [Arabido	1.0	0.989	0.719	2.4e-69
TAIR|locus:2088634	196	AT3G12030 "AT3G12030" [Arabido	1.0	0.989	0.719	6.3e-69
UNIPROTKB|Q3T0N3	188	TMCO1 "Transmembrane and coile	0.922	0.952	0.448	2.4e-37
UNIPROTKB|E2RGT2	188	TMCO1 "Uncharacterized protein	0.922	0.952	0.448	2.4e-37
UNIPROTKB|J9JIE6	239	TMCO1 "Transmembrane and coile	0.922	0.748	0.448	2.4e-37
UNIPROTKB|Q9UM00	188	TMCO1 "Transmembrane and coile	0.922	0.952	0.448	2.4e-37
UNIPROTKB|C5HGF3	188	TMCO1 "Transmembrane and coile	0.922	0.952	0.448	2.4e-37
MGI|MGI:1921173	188	Tmco1 "transmembrane and coile	0.922	0.952	0.448	2.4e-37
RGD|1359178	188	Tmco1 "transmembrane and coile	0.922	0.952	0.448	2.4e-37
UNIPROTKB|E1C8A8	188	TMCO1 "Uncharacterized protein	0.922	0.952	0.442	1.7e-36

TAIR|locus:2144173 AT5G06660 "AT5G06660" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 141/196 (71%), Positives = 155/196 (79%)

Query:     1 MATP-QMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59
             MAT   + +S KY+DSLTVVGISFCTA++CE+ISW+LIYRT+SYK+LKSSIDKASKKLET
Sbjct:     1 MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query:    60 MKIENPAXXXXXXXXXXXX-DRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLF 118
             MK +NP+             DRVE+SLKESSRDLSLFKFKS               NSLF
Sbjct:    61 MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query:   119 EGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG 178
             EGKVVAKLPF P  IV KMSHRGL+GDD+TDCSMAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct:   121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query:   179 AAAGGGLFPMPDPKTN 194
             AA  GGLFPMPDPKTN
Sbjct:   181 AAGAGGLFPMPDPKTN 196

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2088634 AT3G12030 "AT3G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 141/196 (71%), Positives = 153/196 (78%)

Query:     1 MATP-QMLSSLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLET 59
             MAT   + +S KY+DSLTVVGISFCTA++CE+ISW+LIYRT+SYK+LK SIDKA+KKLET
Sbjct:     1 MATTIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLET 60

Query:    60 MKIENPAXXXXXXXXXXXX-DRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLF 118
             MK ENP+             DRVETSLKESSRDLSLFKFKS               NSLF
Sbjct:    61 MKTENPSSKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query:   119 EGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRG 178
             EGKVVAKLPF P  IV KMSHRGL+GDD TDCSMAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct:   121 EGKVVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query:   179 AAAGGGLFPMPDPKTN 194
             AA  GGLFPMPDPKTN
Sbjct:   181 AAGAGGLFPMPDPKTN 196

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q3T0N3 TMCO1 "Transmembrane and coiled-coil domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/183 (44%), Positives = 109/183 (59%)

Query:     9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
             S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct:     2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59

Query:    69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
                       +R E  LK ++RDLS+ + KS               NS+F+G+VVAKLPF
Sbjct:    60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query:   129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
              P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L 
Sbjct:   120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query:   187 PMP 189
             P P
Sbjct:   180 PPP 182

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RGT2 TMCO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/183 (44%), Positives = 109/183 (59%)

Query:     9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
             S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct:     2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59

Query:    69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
                       +R E  LK ++RDLS+ + KS               NS+F+G+VVAKLPF
Sbjct:    60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query:   129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
              P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L 
Sbjct:   120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query:   187 PMP 189
             P P
Sbjct:   180 PPP 182

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|J9JIE6 TMCO1 "Transmembrane and coiled-coil domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/183 (44%), Positives = 109/183 (59%)

Query:     9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
             S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct:    53 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 110

Query:    69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
                       +R E  LK ++RDLS+ + KS               NS+F+G+VVAKLPF
Sbjct:   111 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 170

Query:   129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
              P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L 
Sbjct:   171 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 230

Query:   187 PMP 189
             P P
Sbjct:   231 PPP 233

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9UM00 TMCO1 "Transmembrane and coiled-coil domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/183 (44%), Positives = 109/183 (59%)

Query:     9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
             S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct:     2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59

Query:    69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
                       +R E  LK ++RDLS+ + KS               NS+F+G+VVAKLPF
Sbjct:    60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query:   129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
              P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L 
Sbjct:   120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query:   187 PMP 189
             P P
Sbjct:   180 PPP 182

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|C5HGF3 TMCO1 "Transmembrane and coiled-coil domains protein 1" [Sus scrofa (taxid:9823)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/183 (44%), Positives = 109/183 (59%)

Query:     9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
             S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct:     2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59

Query:    69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
                       +R E  LK ++RDLS+ + KS               NS+F+G+VVAKLPF
Sbjct:    60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query:   129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
              P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L 
Sbjct:   120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query:   187 PMP 189
             P P
Sbjct:   180 PPP 182

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1921173 Tmco1 "transmembrane and coiled-coil domains 1" [Mus musculus (taxid:10090)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/183 (44%), Positives = 109/183 (59%)

Query:     9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
             S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct:     2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59

Query:    69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
                       +R E  LK ++RDLS+ + KS               NS+F+G+VVAKLPF
Sbjct:    60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query:   129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
              P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L 
Sbjct:   120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query:   187 PMP 189
             P P
Sbjct:   180 PPP 182

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1359178 Tmco1 "transmembrane and coiled-coil domains 1" [Rattus norvegicus (taxid:10116)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 82/183 (44%), Positives = 109/183 (59%)

Query:     9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
             S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct:     2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59

Query:    69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
                       +R E  LK ++RDLS+ + KS               NS+F+G+VVAKLPF
Sbjct:    60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query:   129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
              P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L 
Sbjct:   120 TPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLG 179

Query:   187 PMP 189
             P P
Sbjct:   180 PPP 182

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C8A8 TMCO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 81/183 (44%), Positives = 109/183 (59%)

Query:     9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXX 68
             S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K       
Sbjct:     2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITE 59

Query:    69 XXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPF 128
                       +R E  LK ++RDLS+ + KS               NS+F+G+VVAKLPF
Sbjct:    60 SAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPF 119

Query:   129 KPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLF 186
              P   +  +SHR L G+D TDCS  FLY LC++SIR N+QK LG +P R A   AGG L 
Sbjct:   120 IPLSYIQGLSHRNLLGEDYTDCSFIFLYILCTMSIRQNIQKMLGLAPSRAATKQAGGFLG 179

Query:   187 PMP 189
             P P
Sbjct:   180 PPP 182

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54TU8	TMCO1_DICDI	No assigned EC number	0.3977	0.8969	0.9354	yes	no
C5HGF3	TMCO1_PIG	No assigned EC number	0.4644	0.9329	0.9627	yes	no
Q9UM00	TMCO1_HUMAN	No assigned EC number	0.4644	0.9329	0.9627	yes	no
Q3T0N3	TMCO1_BOVIN	No assigned EC number	0.4644	0.9329	0.9627	yes	no
Q921L3	TMCO1_MOUSE	No assigned EC number	0.4644	0.9329	0.9627	yes	no
Q5R9B0	TMCO1_PONAB	No assigned EC number	0.4644	0.9329	0.9627	yes	no
Q5I0H4	TMCO1_RAT	No assigned EC number	0.4644	0.9329	0.9627	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT5G06660 unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF841, eukaryotic (InterPro-IPR008559); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G12030.1); Has 193 Blast hits to 193 proteins in 88 species- Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 41 (source- NCBI BLink). (196 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam01956	168	pfam01956, DUF106, Integral membrane protein DUF10	4e-36

>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106

 Score =  123 bits (311), Expect = 4e-36
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 15  SLTVVGISFCTAIICESISWLLIYRTNS-YKTLKSSIDKASKKLETMKIENPAKISTKKS 73
            + ++ I     ++ E + WLLI R    Y+  +  I K +++L           +  K 
Sbjct: 16  FIVILLIGILRGLLSELLQWLLIDRKMEKYQKREKEIQKRARELRK---------NGDKL 66

Query: 74  KTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGI 133
             KK ++ +  L E  +++ +   K    + +   ++FG +NS F G VVAKLPF   G 
Sbjct: 67  SPKKFEKRQEELMEDQKEMMMDMMKPNFAIMIPQILIFGWINSFFSGFVVAKLPFPLTGR 126

Query: 134 VMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSP 175
              M  RG+ G D TD S    YFLCS  +R  +QK LGF+ 
Sbjct: 127 FKGMLQRGVDGLDVTDVSSISWYFLCSFGLRQVIQKLLGFAN 168

This archaebacterial protein family has no known function. Members are predicted to be integral membrane proteins. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG3312	186	consensus Predicted membrane protein [Function unk	100.0
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	100.0
COG1422	201	Predicted membrane protein [Function unknown]	100.0
KOG3188	246	consensus Uncharacterized conserved protein [Funct	98.86
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	98.29
PRK02201	357	putative inner membrane protein translocase compon	97.08
COG1422	201	Predicted membrane protein [Function unknown]	96.15
PRK01622	256	OxaA-like protein precursor; Validated	96.12
PRK00247	429	putative inner membrane protein translocase compon	95.4
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	95.3
PRK01318	521	membrane protein insertase; Provisional	95.21
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	94.55
PRK00145	223	putative inner membrane protein translocase compon	94.45
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	94.27
PRK02944	255	OxaA-like protein precursor; Validated	94.11
PRK02463	307	OxaA-like protein precursor; Provisional	93.23
PRK01315	329	putative inner membrane protein translocase compon	93.2
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	93.18
PRK11546	143	zraP zinc resistance protein; Provisional	92.18
PRK00888	105	ftsB cell division protein FtsB; Reviewed	91.21
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	91.11
PRK03449	304	putative inner membrane protein translocase compon	91.02
KOG4253	175	consensus Tryptophan-rich basic nuclear protein [G	90.82
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	90.81
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	90.68
PRK01001	795	putative inner membrane protein translocase compon	90.57
PF05992	315	SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009	90.04
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.69
PRK02654	375	putative inner membrane protein translocase compon	89.46
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	88.91
PF14282	106	FlxA: FlxA-like protein	88.71
PF00558	81	Vpu: Vpu protein; InterPro: IPR008187 The Human im	88.55
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	87.71
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	87.36
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	87.07
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	86.0
PRK11020	118	hypothetical protein; Provisional	85.63
PF06476	115	DUF1090: Protein of unknown function (DUF1090); In	85.54
PRK06342	160	transcription elongation factor regulatory protein	85.25
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	84.68
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	80.93
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	80.59
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	80.39
PF08514	118	STAG: STAG domain ; InterPro: IPR013721 STAG domai	80.28

>KOG3312 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.1e-67  Score=421.96  Aligned_cols=181  Identities=57%  Similarity=0.947  Sum_probs=174.9

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHH
Q 029363            9 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKES   88 (194)
Q Consensus         9 ~~~~~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~   88 (194)
                      ++|++|+++|++||++||+++|+++|+||||+++|++|++++++.+|+||+.|+ ..+ +++||.++||+||.|+.+++.
T Consensus         2 s~m~aDtlliv~Is~cTAl~~EgitWvlvYRt~~Yk~LKa~vdK~sKKLE~~K~-~~~-~s~~k~~kkKieR~Ee~LK~~   79 (186)
T KOG3312|consen    2 SFMYADTLLIVFISFCTALLGEGITWVLVYRTDKYKRLKAEVDKQSKKLEKKKE-ENG-DSNDKSKKKKIERVEEKLKNN   79 (186)
T ss_pred             cccccceeeeeHHHHHHHHHhCCceEEEEEehhHHHHHHHHHHHHHHHHHHHhh-hcc-cchhhHHHHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999999999999999999999999 444 578999999999999999999


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHH
Q 029363           89 SRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQ  168 (194)
Q Consensus        89 ~~el~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iq  168 (194)
                      +|||+++|||+|+++|+.|.++++++|++|+|+|||||||.||+++|+++||||.|+|.|||||+|+|+||+|++|||||
T Consensus        80 nRDlSl~kmKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~iqglSHRnL~GdD~TDCSfiFLYiLCtmsiRqNlQ  159 (186)
T KOG3312|consen   80 NRDLSLFKMKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISIIQGLSHRNLKGDDMTDCSFIFLYILCTMSIRQNLQ  159 (186)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHHHhcccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCccCCCCCCCCCCC
Q 029363          169 KFLGFSPPRGAAAGGGLFPMPDP  191 (194)
Q Consensus       169 KlLG~~~~~~~~~~~~~~~~~~~  191 (194)
                      |+|||+|||++++|+|.|+.|++
T Consensus       160 K~LGfaPsRaaa~q~~~~~~P~p  182 (186)
T KOG3312|consen  160 KILGFAPSRAAAKQGGGFPGPPP  182 (186)
T ss_pred             HHhCcCCchhHhhcCCCCCCCCC
Confidence            99999999999999987777665

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=100.00  E-value=2.3e-39  Score=262.80  Aligned_cols=154  Identities=29%  Similarity=0.432  Sum_probs=141.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh
Q 029363           14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS   93 (194)
Q Consensus        14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~   93 (194)
                      -+++|+++|+++++++|+++|.+|||+  +.+.|.+.++++++.+++++ .+     +.++.||+|+.|+++++.+.+++
T Consensus        15 ~~i~v~~~~~~~~~~s~l~~~~~i~~~--~~~~~~~~~~~~~~~~~l~~-~~-----~~~~~~~l~~~~~~~~~~~~~~~   86 (168)
T PF01956_consen   15 ITIVVFLIAILRGLISELLQKFLIDRK--MDKYQKRMKEFQKRYRELRK-NG-----DFKKPKKLEKRQMELMEKQQEMM   86 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHHHHHHH-cC-----CccCHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999999666  56667777777777777777 33     35668999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHHHHhCC
Q 029363           94 LFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGF  173 (194)
Q Consensus        94 ~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iqKlLG~  173 (194)
                      +.+||||++++++++++|++++++|.|.+|+|+||.|+++|+.++|||++|.|+++|||++|||||||++|+++||+||.
T Consensus        87 ~~~mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl~~~d~~~~s~i~wYfL~s~~~~~vi~k~lg~  166 (168)
T PF01956_consen   87 MMMMKPMFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGLEGLDVSYVSSISWYFLCSFGLRQVIRKLLGE  166 (168)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCCCCCcccHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 029363          174 SP  175 (194)
Q Consensus       174 ~~  175 (194)
                      ++
T Consensus       167 ~n  168 (168)
T PF01956_consen  167 NN  168 (168)
T ss_pred             CC
Confidence            75

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

>COG1422 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=223.53  Aligned_cols=154  Identities=18%  Similarity=0.206  Sum_probs=131.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363           13 SDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL   92 (194)
Q Consensus        13 ~d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el   92 (194)
                      .=.++|+++|++||++++++++++| |.|+++++|++++++||+.+||++ +++     .++-||+|+.|+|.++.|+||
T Consensus        45 ~p~lvilV~avi~gl~~~i~~~~li-D~ekm~~~qk~m~efq~e~~eA~~-~~d-----~~~lkkLq~~qmem~~~Q~el  117 (201)
T COG1422          45 PPHLVILVAAVITGLYITILQKLLI-DQEKMKELQKMMKEFQKEFREAQE-SGD-----MKKLKKLQEKQMEMMDDQREL  117 (201)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHH-hCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999997 999999999999999999999999 544     455667777777777789999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHH--HHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHHHH
Q 029363           93 SLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIV--MKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKF  170 (194)
Q Consensus        93 ~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~--~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iqKl  170 (194)
                      ++..||||++|++++|++|.++..+..+....+-|++.+.|.  +.+||.++.|+.   .+|++||||||++++|+|||.
T Consensus       118 mk~qfkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gWi~WYfLcS~~vs~ilrk~  194 (201)
T COG1422         118 MKMQFKPMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVFGDF---LGWIGWYFLCSFVVSQILRKV  194 (201)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccccccc---hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999954444444477777776666553  477999998887   999999999999999999999


Q ss_pred             hCCCCC
Q 029363          171 LGFSPP  176 (194)
Q Consensus       171 LG~~~~  176 (194)
                      ||++..
T Consensus       195 l~i~~~  200 (201)
T COG1422         195 LNIAVF  200 (201)
T ss_pred             HhcccC
Confidence            998764

>KOG3188 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=2.7e-08  Score=84.30  Aligned_cols=84  Identities=25%  Similarity=0.300  Sum_probs=75.3

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCC--CCCcchHHHHHHHHHHhhHHHHHH
Q 029363           92 LSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGD--DATDCSMAFLYFLCSISIRTNLQK  169 (194)
Q Consensus        92 l~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~--d~tdcs~if~Y~Lcsm~~r~~iqK  169 (194)
                      +.+..+|.++...++.+++++|+|.+|.|.+..|+||...-.|..+.++|+.-.  |+...|.+.|||||-+|.|.+-.-
T Consensus       107 mlmdmmKgNm~~viPqtii~~WiN~fFSGFv~~kvPFPLTlrFK~MlQ~Gi~l~~LDv~wVSS~SWYFLnvfGLrsiysL  186 (246)
T KOG3188|consen  107 MLMDMMKGNMANVIPQTIIGGWINWFFSGFVTTKVPFPLTLRFKSMLQRGIDLQDLDVSWVSSASWYFLNVFGLRSIYSL  186 (246)
T ss_pred             HHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHcCchhhhcchhHhhhhHHHHHHHhhhHHHHHH
Confidence            455559999999999999999999999999999999988888999999998744  666678899999999999999999


Q ss_pred             HhCCCC
Q 029363          170 FLGFSP  175 (194)
Q Consensus       170 lLG~~~  175 (194)
                      +||-..
T Consensus       187 iLG~~N  192 (246)
T KOG3188|consen  187 ILGEEN  192 (246)
T ss_pred             Hhcccc
Confidence            999665

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=98.29  E-value=1.8e-06  Score=70.22  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhCCCccccch-----hhhHHhHHHHHHHHHHhhhhhhhhhh----hhHHHHHHHHHHHHHH
Q 029363           44 KTLKSSIDKASKKLETMKIENPAKISTKK-----SKTKKIDRVETSLKESSRDLSLFKFK----SGAVVALVLFVVFGLL  114 (194)
Q Consensus        44 ~klq~~~~~~~kkl~k~ke~~~~~~~~~k-----~~~kkler~e~el~~~~~el~~~k~k----sm~~~~l~~i~~f~l~  114 (194)
                      .+.-++..++++|+.++++|..+..+.|.     |.++|++++++|+.+++++....+.+    -..+..+++.+.+..+
T Consensus        36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (161)
T PF04420_consen   36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVL  115 (161)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------------
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44444555555555555554322223343     78899999999999988888777632    2333444455555577


Q ss_pred             HHhhcCccccccCCcch-HHHHHH--hcCCCCCCCCCcchHHHHHHHHH
Q 029363          115 NSLFEGKVVAKLPFKPF-GIVMKM--SHRGLQGDDATDCSMAFLYFLCS  160 (194)
Q Consensus       115 ~~~f~g~~VakLPF~pi-~~~~~~--thrgL~G~d~tdcs~if~Y~Lcs  160 (194)
                      ..||-..+|..+|-.-+ .|+..+  ..++..|    ..|-.+|=+.|+
T Consensus       116 ~~~~rk~pV~~lp~~~~p~p~~~lLSfP~~~~g----aVsi~~W~~ac~  160 (161)
T PF04420_consen  116 RFWYRKTPVFYLPKGWFPWPFEWLLSFPTAPLG----AVSITVWLFACN  160 (161)
T ss_dssp             -------------------------------------------------
T ss_pred             heeecCceEEEECchhhHHHHHHheecccCCCC----ceehHHHHHHhc
Confidence            77888889999995555 455544  3444444    378888888885

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=97.08  E-value=0.012  Score=53.87  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=41.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHH
Q 029363           39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLN  115 (194)
Q Consensus        39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~  115 (194)
                      .+++++++|-+++++++|.++.           ++..+..++.++|++++.+|-...-   +-|+++-+.+++++|..+.
T Consensus       158 s~~km~~lqPel~~Iq~Kyk~~-----------~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~  226 (357)
T PRK02201        158 NQEKQEELQGKKAKIDAKYKDY-----------KKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQ  226 (357)
T ss_pred             HHHHHHHhhHHHHHHHHHHhcc-----------cCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555322           1114456677788888666554433   6688888888888887776


Q ss_pred             Hh
Q 029363          116 SL  117 (194)
Q Consensus       116 ~~  117 (194)
                      +.
T Consensus       227 ~~  228 (357)
T PRK02201        227 SL  228 (357)
T ss_pred             hh
Confidence            54

>COG1422 Predicted membrane protein [Function unknown]

Probab=96.15  E-value=0.074  Score=45.11  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHH
Q 029363           23 FCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAV  102 (194)
Q Consensus        23 ~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~  102 (194)
                      +++|.+..+..-++=|..-+    +++|++.||+.++.|++. . +..+++.++|++|+|++++|+.++=.- -||--+=
T Consensus        51 lV~avi~gl~~~i~~~~liD----~ekm~~~qk~m~efq~e~-~-eA~~~~d~~~lkkLq~~qmem~~~Q~e-lmk~qfk  123 (201)
T COG1422          51 LVAAVITGLYITILQKLLID----QEKMKELQKMMKEFQKEF-R-EAQESGDMKKLKKLQEKQMEMMDDQRE-LMKMQFK  123 (201)
T ss_pred             HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHH-H-HHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence            34444444444444222222    667778888888877732 2 345667899999999999999876533 3555555


Q ss_pred             HHHHHHHHH
Q 029363          103 VALVLFVVF  111 (194)
Q Consensus       103 ~~l~~i~~f  111 (194)
                      -|+.++++.
T Consensus       124 PM~~~~v~t  132 (201)
T COG1422         124 PMLYISVLT  132 (201)
T ss_pred             hHHHHHHHH
Confidence            555555555

>PRK01622 OxaA-like protein precursor; Validated

Probab=96.12  E-value=0.052  Score=47.29  Aligned_cols=65  Identities=6%  Similarity=0.101  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhh----hhHHHHHHHHHHHHHHHH
Q 029363           47 KSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFK----SGAVVALVLFVVFGLLNS  116 (194)
Q Consensus        47 q~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~k----sm~~~~l~~i~~f~l~~~  116 (194)
                      +++|.++|-++++.++ +.. +   ++..++.++.++|++++.+|-+..-++    |+++-+.+++++|..+.+
T Consensus        90 ~~km~~iqP~l~~iq~-kyk-~---~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~  158 (256)
T PRK01622         90 QEKMAVMKPELDKIQA-KLK-V---TKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRR  158 (256)
T ss_pred             HHHHHHhCHHHHHHHH-HHh-c---cCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence            4455555555555555 321 0   111333345677778877766655444    666677777777766654

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=95.40  E-value=0.36  Score=45.34  Aligned_cols=40  Identities=10%  Similarity=0.202  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHHh
Q 029363           78 IDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNSL  117 (194)
Q Consensus        78 ler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~~  117 (194)
                      .++.++|++++.++-+..-   +-|+++-+.+|+++|..+.+.
T Consensus        84 ~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~m  126 (429)
T PRK00247         84 IRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRM  126 (429)
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445567777666554333   667788888888888777774

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=95.30  E-value=1.3  Score=36.26  Aligned_cols=38  Identities=3%  Similarity=0.138  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHH
Q 029363           79 DRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNS  116 (194)
Q Consensus        79 er~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~  116 (194)
                      ++.++|++++.++-+..-   +-|+++-+.+++++|..+++
T Consensus        50 ~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pif~~~~~~lr~   90 (181)
T TIGR03592        50 QKLQQEMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLRR   90 (181)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666666555544433   44666666666666665554

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK01318 membrane protein insertase; Provisional

Probab=95.21  E-value=0.61  Score=44.73  Aligned_cols=108  Identities=14%  Similarity=0.110  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh--h-hhhhHHHHHHHHHHHHHHHHhhcCc
Q 029363           45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF--K-FKSGAVVALVLFVVFGLLNSLFEGK  121 (194)
Q Consensus        45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~--k-~ksm~~~~l~~i~~f~l~~~~f~g~  121 (194)
                      +-.++|+++|-+++++|+ +..         ..-++.++|++++-++-...  . +-|+++-+.+|+++|.++.+..+  
T Consensus       347 ~s~~km~~lqP~~~~i~~-kyk---------~d~~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--  414 (521)
T PRK01318        347 VSMAKMKVLQPKMQELKE-KYK---------DDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--  414 (521)
T ss_pred             HHHHHHHHhhHHHHHHHH-HhH---------hhHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--
Confidence            344566677777777777 322         01245667777755544333  2 66778888888888877766544  


Q ss_pred             cccccCCcchH-HHHHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHHHHhCCC
Q 029363          122 VVAKLPFKPFG-IVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFS  174 (194)
Q Consensus       122 ~VakLPF~pi~-~~~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iqKlLG~~  174 (194)
                          +.-.|+. |++     .|.-+|++..=.+ ..+-.-|++.+.++--++-.
T Consensus       415 ----l~~~~fl~Wi~-----DLs~~Dp~~il~~-~~lPil~~~~~~~~~~l~~~  458 (521)
T PRK01318        415 ----LRHAPFIGWIH-----DLSAPDPYFILHI-GLLPILMGITMFLQQKLNPT  458 (521)
T ss_pred             ----hccCchheeec-----cccccccchhHHH-HHHHHHHHHHHHHHHHhcCC
Confidence                2223443 444     4544565422111 11122355666777766643

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=94.55  E-value=2.2  Score=35.00  Aligned_cols=63  Identities=6%  Similarity=0.160  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhh--hhh-hhhhHHHHHHHHHHHHHHHHh
Q 029363           45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLS--LFK-FKSGAVVALVLFVVFGLLNSL  117 (194)
Q Consensus        45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~--~~k-~ksm~~~~l~~i~~f~l~~~~  117 (194)
                      |-.+++.+++.++++.++ +.         ++.-++.++|++++-+|-+  ..+ +-|+++-+.+++.+|..+++.
T Consensus        27 ~~~~k~~~~~P~l~~i~~-k~---------~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pif~~~~~~lr~~   92 (198)
T PF02096_consen   27 RSSAKMQELQPELKEIQE-KY---------KEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPIFIGLFRALRRM   92 (198)
T ss_pred             HHHHHHHHHHHHHHHHHH-hh---------hHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455556666666665 21         1122234455555444433  322 445555666666666655554

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=94.45  E-value=1.6  Score=37.14  Aligned_cols=63  Identities=5%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHHh
Q 029363           45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNSL  117 (194)
Q Consensus        45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~~  117 (194)
                      +-.+++++++-++++.++ ... +  |      -+|.++|.+++.++-+..-   +-|+++-..+++++|+.+++.
T Consensus        55 ~~~~km~~iqP~~~~i~~-k~k-~--d------~~~~~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~  120 (223)
T PRK00145         55 KSSLRMNEIQPEIKKLQA-KYK-N--D------PQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNL  120 (223)
T ss_pred             HHHHHHHHhhHHHHHHHH-HHH-c--c------HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455556666666665 211 0  1      1356667777666654333   456666677777777666553

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=94.27  E-value=0.96  Score=36.47  Aligned_cols=76  Identities=12%  Similarity=0.072  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchH-HHH-HHhcCCCCCCCCCcchHHHHHH
Q 029363           80 RVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFG-IVM-KMSHRGLQGDDATDCSMAFLYF  157 (194)
Q Consensus        80 r~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~-~~~-~~thrgL~G~d~tdcs~if~Y~  157 (194)
                      ...+.+.++..+.+.-.+--++.+.+++..+.+.+...-.++..- -|+.++. ..| ++  .++.+.+++-.+|-|+-.
T Consensus        77 ~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPF-pl~~~f~~~~qrgl--~~~d~~~~s~i~wYfL~s  153 (168)
T PF01956_consen   77 ELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFSGFVVAKLPF-PLTGRFKSMLQRGL--EGLDVSYVSSISWYFLCS  153 (168)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcceEEeec-cccHHHhHHhhcCC--CCCcccHhHHHHHHHHHH
Confidence            333344444444444444344444444444444444443333332 3344444 344 44  666666666666655544


Q ss_pred             H
Q 029363          158 L  158 (194)
Q Consensus       158 L  158 (194)
                      .
T Consensus       154 ~  154 (168)
T PF01956_consen  154 F  154 (168)
T ss_pred             H
Confidence            3

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

>PRK02944 OxaA-like protein precursor; Validated

Probab=94.11  E-value=0.5  Score=41.20  Aligned_cols=66  Identities=3%  Similarity=0.045  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHH
Q 029363           45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNS  116 (194)
Q Consensus        45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~  116 (194)
                      +-..+++++|-++++.++ +..++  |   .+.-+|.++|.+++-++-+..-   +-|+++-+.+++++|..+++
T Consensus        83 ~~~~km~~iqPe~~~iq~-kyk~~--~---~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~  151 (255)
T PRK02944         83 KSTKAMQALQPEMQKLKE-KYSSK--D---QATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMR  151 (255)
T ss_pred             HHHHHHHHccHHHHHHHH-HHcCC--C---HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555566666666666 32200  1   3344677778887655555433   56667777778888876654

>PRK02463 OxaA-like protein precursor; Provisional

Probab=93.23  E-value=0.7  Score=41.47  Aligned_cols=65  Identities=9%  Similarity=0.078  Sum_probs=37.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh-----hhhhHHHHHHHHHHHHHH
Q 029363           40 TNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK-----FKSGAVVALVLFVVFGLL  114 (194)
Q Consensus        40 ~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k-----~ksm~~~~l~~i~~f~l~  114 (194)
                      +++++.+|-+++++|+|++.+++            ++..++.++|++++.+|-+..-     .-|+++-+.+++++|..+
T Consensus        90 ~~KM~~lqPe~~~Iq~Kyk~~~~------------~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai  157 (307)
T PRK02463         90 SEKMAYLKPVFEPINERLKNATT------------QEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAA  157 (307)
T ss_pred             HHHHHHhChhHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHH
Confidence            35555666666666666543221            2233455677777666644333     346777788888888755


Q ss_pred             HH
Q 029363          115 NS  116 (194)
Q Consensus       115 ~~  116 (194)
                      .+
T Consensus       158 ~~  159 (307)
T PRK02463        158 QY  159 (307)
T ss_pred             hc
Confidence            43

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=93.20  E-value=6.4  Score=35.75  Aligned_cols=64  Identities=8%  Similarity=0.151  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh--h-hhhhHHHHHHHHHHHHHHHHhh
Q 029363           45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF--K-FKSGAVVALVLFVVFGLLNSLF  118 (194)
Q Consensus        45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~--k-~ksm~~~~l~~i~~f~l~~~~f  118 (194)
                      +-..+|.+++-++++.++ ...         .+-++.++|.+++.++-+..  . +-|+++-+.+++++|..+++-.
T Consensus        66 ~~~~km~~lqPe~~~iq~-kyk---------~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~  132 (329)
T PRK01315         66 KSQRNMQEIQPKMKKIQE-KYK---------GDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAA  132 (329)
T ss_pred             HHHHHHHHccHHHHHHHH-HHH---------hHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666666666666 321         01335567777755554433  3 6788888889999998887643

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=93.18  E-value=0.72  Score=32.92  Aligned_cols=62  Identities=23%  Similarity=0.499  Sum_probs=38.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 029363           38 YRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSL  117 (194)
Q Consensus        38 yr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~  117 (194)
                      .++++|++++++++++.+|+|-.-.|             -   .|..=+..+||++.   -=.+++|+++..++..+++.
T Consensus         9 v~~~~~~~i~~rLd~iEeKvEf~~~E-------------i---~Qr~GkkiGRDiGI---lYG~v~Glii~~~~~~l~~~   69 (70)
T PF04210_consen    9 VDPDDFNEIMKRLDEIEEKVEFTNAE-------------I---AQRAGKKIGRDIGI---LYGLVIGLIIFIIYIVLSSM   69 (70)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHhHHHH-------------H---HHHHhHHhhhHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence            37888888888888887777653331             0   01111224555543   45778888887777777665


Q ss_pred             h
Q 029363          118 F  118 (194)
Q Consensus       118 f  118 (194)
                      |
T Consensus        70 ~   70 (70)
T PF04210_consen   70 F   70 (70)
T ss_pred             C
Confidence            4

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>PRK11546 zraP zinc resistance protein; Provisional

Probab=92.18  E-value=1.3  Score=35.72  Aligned_cols=79  Identities=9%  Similarity=0.084  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHh-------------hccchhHHHHHHHHHHHHHHHHHhhhh----------CCCccccc
Q 029363           15 SLTVVGISFCTAIICESISWLL-------------IYRTNSYKTLKSSIDKASKKLETMKIE----------NPAKISTK   71 (194)
Q Consensus        15 ~l~I~~ia~~t~l~se~ls~~L-------------Vyr~e~y~klq~~~~~~~kkl~k~ke~----------~~~~~~~~   71 (194)
                      .++++++|+++.+-+-.+.|.-             =...|+..++++-.++.+.+...++++          -..++++|
T Consensus         8 ~~~~~ala~~~~~s~~a~A~~~~G~~~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD   87 (143)
T PRK11546          8 ALVLMALSALAMGSGSAFAHHHWGGGHGMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPD   87 (143)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhccCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3567778888777777776641             016677666655555544433333322          12223344


Q ss_pred             hhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363           72 KSKTKKIDRVETSLKESSRDLSLFK   96 (194)
Q Consensus        72 k~~~kkler~e~el~~~~~el~~~k   96 (194)
                         .+|+.++..|+.+++.+|.--+
T Consensus        88 ---~~kI~aL~kEI~~Lr~kL~e~r  109 (143)
T PRK11546         88 ---SSKINAVAKEMENLRQSLDELR  109 (143)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHH
Confidence               7778888888888887776544

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=91.21  E-value=1.6  Score=33.19  Aligned_cols=32  Identities=13%  Similarity=0.273  Sum_probs=25.1

Q ss_pred             HHHHHhhccch---hHHHHHHHHHHHHHHHHHhhh
Q 029363           31 SISWLLIYRTN---SYKTLKSSIDKASKKLETMKI   62 (194)
Q Consensus        31 ~ls~~LVyr~e---~y~klq~~~~~~~kkl~k~ke   62 (194)
                      +++|.+++-..   .|.++++++++++++++++++
T Consensus        14 ~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~   48 (105)
T PRK00888         14 WLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKA   48 (105)
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666665454   688999999999999988887

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=91.11  E-value=1.5  Score=39.24  Aligned_cols=39  Identities=5%  Similarity=0.077  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHHh
Q 029363           79 DRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNSL  117 (194)
Q Consensus        79 er~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~~  117 (194)
                      ++.++|.+++-++-...-   .-|+++.+.+++++++.+.+.
T Consensus       159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~  200 (314)
T COG0706         159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRST  200 (314)
T ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence            344557888777766555   558888888888888776655

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=91.02  E-value=3.1  Score=37.35  Aligned_cols=63  Identities=6%  Similarity=0.136  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh--h-hhhhHHHHHHHHHHHHHHHHh
Q 029363           45 TLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF--K-FKSGAVVALVLFVVFGLLNSL  117 (194)
Q Consensus        45 klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~--k-~ksm~~~~l~~i~~f~l~~~~  117 (194)
                      +-.+++.+++=+++++++ +..         ...++.++|++++.+|-+..  + +-|+++-+.+++++|..+.+.
T Consensus        56 ks~~km~~lqP~l~~iq~-kyk---------~~~~~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~  121 (304)
T PRK03449         56 RTTRKMQELQPQIKALQK-KYG---------NDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSF  121 (304)
T ss_pred             HHHHHHHHccHHHHHHHH-Hhh---------hhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334555566666666666 321         11245667777766555433  3 678888888999999877764

>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]

Probab=90.82  E-value=1.1  Score=36.89  Aligned_cols=86  Identities=14%  Similarity=0.174  Sum_probs=43.4

Q ss_pred             hhhHHhHHHHHHHHH--HhhhhhhhhhhhhHHHHHHHHHHHHHHHHh----hcCccccccC-CcchHHHHHH--hcCCCC
Q 029363           73 SKTKKIDRVETSLKE--SSRDLSLFKFKSGAVVALVLFVVFGLLNSL----FEGKVVAKLP-FKPFGIVMKM--SHRGLQ  143 (194)
Q Consensus        73 ~~~kkler~e~el~~--~~~el~~~k~ksm~~~~l~~i~~f~l~~~~----f~g~~VakLP-F~pi~~~~~~--thrgL~  143 (194)
                      +..+|++++.+|++.  .++......+|-  ++.+.|.++=.+++..    +...+|+-+| |..-.|.+++  ..+...
T Consensus        74 RlnRKi~kl~~ele~qs~n~~~q~~~~K~--vlSv~f~vl~~~~~~~~~~K~ss~pv~~~Ptf~~~~w~~~~l~~p~~~~  151 (175)
T KOG4253|consen   74 RLNRKINKLDKELETQSKNKTAQAHLHKW--VLSVAFYVLKIMYGKTPVYKLSSSPVTLFPTFVSGVWSQGWLYVPLHAL  151 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhceeeeecCCceeeecchhccchhHHHHHHHHHHh
Confidence            567778877777765  333333333433  4444444443333322    2235777777 3222244422  222233


Q ss_pred             CCCCCcchHHHHHHHHHHhhH
Q 029363          144 GDDATDCSMAFLYFLCSISIR  164 (194)
Q Consensus       144 G~d~tdcs~if~Y~Lcsm~~r  164 (194)
                      |.    .|-..|-+-|.=.+.
T Consensus       152 gs----VsltiW~~a~~kvi~  168 (175)
T KOG4253|consen  152 GS----VSLTIWVWALMKVIN  168 (175)
T ss_pred             CC----cchhhhHHHHHHHHh
Confidence            44    667777777765544

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=90.81  E-value=2.1  Score=31.14  Aligned_cols=62  Identities=23%  Similarity=0.455  Sum_probs=37.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 029363           38 YRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSL  117 (194)
Q Consensus        38 yr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~~  117 (194)
                      .++++|++++++++++.+|+|-.-.|             -   .|..=+..+||++-   -=.+++|+++..+...++..
T Consensus        12 v~~~d~~~i~~rLD~iEeKVEftn~E-------------i---~Qr~GkkvGRDiGI---lYG~viGlli~~i~~~~~~~   72 (77)
T PRK01026         12 VDPKDFKEIQKRLDEIEEKVEFTNAE-------------I---FQRIGKKVGRDIGI---LYGLVIGLLIVLVYIILSPI   72 (77)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHH-------------H---HHHHhHHhhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            37788998888888888887664331             1   11111225666654   35677777777666655554


Q ss_pred             h
Q 029363          118 F  118 (194)
Q Consensus       118 f  118 (194)
                      |
T Consensus        73 ~   73 (77)
T PRK01026         73 F   73 (77)
T ss_pred             H
Confidence            4

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=90.68  E-value=0.93  Score=30.90  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhh
Q 029363           42 SYKTLKSSIDKASKKLETMKI   62 (194)
Q Consensus        42 ~y~klq~~~~~~~kkl~k~ke   62 (194)
                      .+-+++.+.++++++++++++
T Consensus        42 ~~~~~r~~~~~~~k~l~~le~   62 (68)
T PF06305_consen   42 SRLRLRRRIRRLRKELKKLEK   62 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345555555666665555554

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=90.57  E-value=1.9  Score=43.35  Aligned_cols=61  Identities=15%  Similarity=0.130  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHHHHHh
Q 029363           47 KSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGLLNSL  117 (194)
Q Consensus        47 q~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l~~~~  117 (194)
                      .++|+++|-+++++++ +..         +.-+|.|+|+|++-++-+..-   .-||++-+.+++++|..+.+-
T Consensus       602 maKMq~LQPemqeIQe-KYK---------dD~qK~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~s  665 (795)
T PRK01001        602 MRRMQKLSPYIQEIQQ-KYK---------KEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSS  665 (795)
T ss_pred             HHHHHHhhHHHHHHHH-HhH---------hHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3466667777777777 322         122556778888666655433   568888888888888777653

>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R

Probab=90.04  E-value=13  Score=33.76  Aligned_cols=128  Identities=13%  Similarity=0.162  Sum_probs=79.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHh---h
Q 029363           14 DSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESS---R   90 (194)
Q Consensus        14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~---~   90 (194)
                      ..+..+.+|++..+++.+.+++.  ++=-++=-.+.-+..-+..++.+. --|          +-||+||+-|.-.   .
T Consensus        58 ~~~~f~~ia~~~v~~~v~~~ff~--shyiFrWR~Am~~yY~~~W~~~r~-IEG----------ASQRIQEDtmrfa~i~E  124 (315)
T PF05992_consen   58 QILNFLWIAMIYVVLAVLNSFFV--SHYIFRWRTAMNEYYMSHWPKLRH-IEG----------ASQRIQEDTMRFAKIME  124 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHhcc-Ccc----------HHHHHHHHHHHHHHHHH
Confidence            34455556666555555443332  443333333344455566666655 222          3468888888833   3


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHhhcCccccccCCcchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHhhHHHHHHH
Q 029363           91 DLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKF  170 (194)
Q Consensus        91 el~~~k~ksm~~~~l~~i~~f~l~~~~f~g~~VakLPF~pi~~~~~~thrgL~G~d~tdcs~if~Y~Lcsm~~r~~iqKl  170 (194)
                      +|+. ++-..+.|.+.|+|+.     |--+..|..+|+-              |+.   ...++|+.++...+...+--+
T Consensus       125 ~Lgv-~~i~simtliaFlPiL-----~~lS~~V~~lp~~--------------g~i---~~~Lv~~ai~~s~~gt~~l~~  181 (315)
T PF05992_consen  125 DLGV-SFIRSIMTLIAFLPIL-----WELSSHVSELPFF--------------GEI---PHSLVWAAIIWSLFGTILLAF  181 (315)
T ss_pred             HHHH-HHHHHHHHHHHHHHHH-----HHHhccCCcCccc--------------CCC---chHHHHHHHHHHHHHHHHHHH
Confidence            3333 4667788888888888     4444556566642              222   456888899999999999889


Q ss_pred             hCCCCCC
Q 029363          171 LGFSPPR  177 (194)
Q Consensus       171 LG~~~~~  177 (194)
                      .|.+.|.
T Consensus       182 vGikLPg  188 (315)
T PF05992_consen  182 VGIKLPG  188 (315)
T ss_pred             HhccCcc
Confidence            8988874

meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.69  E-value=0.78  Score=40.56  Aligned_cols=85  Identities=13%  Similarity=0.178  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhh-------
Q 029363           22 SFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSL-------   94 (194)
Q Consensus        22 a~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~-------   94 (194)
                      ++.+.+..+.++-.+.-...+|..++++..+++++++.+..+.....+.-...++++++.+.+++.++.++.-       
T Consensus        19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~   98 (265)
T COG3883          19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE   98 (265)
T ss_pred             hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666554445677888888888888777766632110111112344445544444444444322       


Q ss_pred             ------hhhhhhHHHHHH
Q 029363           95 ------FKFKSGAVVALV  106 (194)
Q Consensus        95 ------~k~ksm~~~~l~  106 (194)
                            -+.|+|-..|=.
T Consensus        99 r~~~l~~raRAmq~nG~~  116 (265)
T COG3883          99 RQELLKKRARAMQVNGTA  116 (265)
T ss_pred             HHHHHHHHHHHHHHcCCh
Confidence                  236777666544

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=89.46  E-value=2.7  Score=38.74  Aligned_cols=33  Identities=12%  Similarity=0.199  Sum_probs=20.0

Q ss_pred             HHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHHH
Q 029363           80 RVETSLKESSRDLSLFK---FKSGAVVALVLFVVFGL  113 (194)
Q Consensus        80 r~e~el~~~~~el~~~k---~ksm~~~~l~~i~~f~l  113 (194)
                      +.++|++++-+|-+ .-   .-|+++-+.+++++|..
T Consensus        80 k~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~  115 (375)
T PRK02654         80 KQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFAT  115 (375)
T ss_pred             HHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHH
Confidence            45666666555555 22   55666667777777763

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=88.91  E-value=4.8  Score=28.21  Aligned_cols=21  Identities=5%  Similarity=0.404  Sum_probs=9.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhh
Q 029363           42 SYKTLKSSIDKASKKLETMKI   62 (194)
Q Consensus        42 ~y~klq~~~~~~~kkl~k~ke   62 (194)
                      +..++..++++.+++.++++.
T Consensus         7 ~l~~ie~~l~~~~~~i~~lE~   27 (71)
T PF10779_consen    7 KLNRIETKLDNHEERIDKLEK   27 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

>PF14282 FlxA: FlxA-like protein

Probab=88.71  E-value=1.7  Score=32.92  Aligned_cols=54  Identities=9%  Similarity=0.264  Sum_probs=41.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363           40 TNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK   96 (194)
Q Consensus        40 ~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k   96 (194)
                      .+..++|++.++.+++++.++.+ .  .+.+.+.+.++.+.++.++..+..+|....
T Consensus        18 ~~~I~~L~~Qi~~Lq~ql~~l~~-~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq   71 (106)
T PF14282_consen   18 DSQIEQLQKQIKQLQEQLQELSQ-D--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ   71 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-c--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667899999999999999888 2  122355667888899999999888887544

>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells []

Probab=88.55  E-value=0.66  Score=34.06  Aligned_cols=51  Identities=16%  Similarity=0.285  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccc
Q 029363           18 VVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKIS   69 (194)
Q Consensus        18 I~~ia~~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~   69 (194)
                      +..+|++++++...+-|.+||+.=+-.+.|.+++++-+|+.+-.| .+|.+|
T Consensus         7 ~~iialiv~~iiaIvvW~iv~ieYrk~~rqrkId~li~RIreraE-DSGnES   57 (81)
T PF00558_consen    7 LAIIALIVALIIAIVVWTIVYIEYRKIKRQRKIDRLIERIRERAE-DSGNES   57 (81)
T ss_dssp             -HHHHHHHHHHHHHHHHHHH------------CHHHHHHHHCTTT-CCHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcccc-cCCCCC
Confidence            334556666666788899988764444556777777777777666 344344

; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=87.71  E-value=4.9  Score=28.71  Aligned_cols=59  Identities=24%  Similarity=0.459  Sum_probs=34.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 029363           39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNS  116 (194)
Q Consensus        39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k~ksm~~~~l~~i~~f~l~~~  116 (194)
                      ++.+|++++++++++.+|+|-.-.                |-.|..=+..+||++-   -=.+++|+++..++..+..
T Consensus        10 ~~~d~~~i~~rLd~iEeKVEf~~~----------------E~~Qr~Gkk~GRDiGI---lYG~viGlli~~~~~~l~~   68 (70)
T TIGR01149        10 EPDEFNEVMKRLDEIEEKVEFVNG----------------EVAQRIGKKVGRDIGI---LYGLVIGLILFLIYILLSS   68 (70)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhHHhhhHHHH---HHHHHHHHHHHHHHHHHHh
Confidence            677888888888877777765332                0111111235666654   3566777766666654443

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=87.36  E-value=2.5  Score=40.11  Aligned_cols=74  Identities=23%  Similarity=0.378  Sum_probs=43.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhccchhHH---------------HHHHHHHHHHHHHHHhhhhC--------------
Q 029363           14 DSLTVVGISFCTAIICESISWLLIYRTNSYK---------------TLKSSIDKASKKLETMKIEN--------------   64 (194)
Q Consensus        14 d~l~I~~ia~~t~l~se~ls~~LVyr~e~y~---------------klq~~~~~~~kkl~k~ke~~--------------   64 (194)
                      |.++++.+-+.+|.     -|+- |++.++.               +...+++++||+|++++++.              
T Consensus       216 D~iLv~lili~v~g-----cw~a-y~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl  289 (575)
T KOG4403|consen  216 DFILVVLILIGVGG-----CWFA-YRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKL  289 (575)
T ss_pred             hHHHHHHHHHHhhh-----hhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Confidence            66665555444443     3555 6665553               23344567899999998850              


Q ss_pred             ----------CCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363           65 ----------PAKISTKKSKTKKIDRVETSLKESSRDLSLF   95 (194)
Q Consensus        65 ----------~~~~~~~k~~~kkler~e~el~~~~~el~~~   95 (194)
                                .|.++ ... .|.+|+++.+|.+..++|-..
T Consensus       290 ~ea~rl~elreg~e~-e~~-rkelE~lR~~L~kAEkele~n  328 (575)
T KOG4403|consen  290 DEAPRLSELREGVEN-ETS-RKELEQLRVALEKAEKELEAN  328 (575)
T ss_pred             hhhhhhhhhhcchhH-HHH-HHHHHHHHHHHHHHHHHHHhc
Confidence                      01111 111 257888888888888877554

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=87.07  E-value=3.4  Score=28.04  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=17.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHh
Q 029363           39 RTNSYKTLKSSIDKASKKLETM   60 (194)
Q Consensus        39 r~e~y~klq~~~~~~~kkl~k~   60 (194)
                      .+-+.++++++++++++++++.
T Consensus        46 ~r~~~~~~~k~l~~le~e~~~l   67 (68)
T PF06305_consen   46 LRRRIRRLRKELKKLEKELEQL   67 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3446789999999999998875

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=86.00  E-value=6.1  Score=29.91  Aligned_cols=66  Identities=11%  Similarity=0.246  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhh
Q 029363           24 CTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLF   95 (194)
Q Consensus        24 ~t~l~se~ls~~LVyr~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~   95 (194)
                      +.+++--.++.-++ .++.+.++.+++++...|+.+.+. +-..- ++   .+.+.+++.++.+++-++...
T Consensus        19 ~~~~~~~~l~~~~a-~~~~~~~l~~~~~~~~~Rl~~lE~-~l~~L-Pt---~~dv~~L~l~l~el~G~~~~l   84 (106)
T PF10805_consen   19 AGGIFWLWLRRTYA-KREDIEKLEERLDEHDRRLQALET-KLEHL-PT---RDDVHDLQLELAELRGELKEL   84 (106)
T ss_pred             HHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHH-HHHhC-CC---HHHHHHHHHHHHHHHhHHHHH
Confidence            33444344555554 678888888888888888888777 32211 11   345566666666655555443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK11020 hypothetical protein; Provisional

Probab=85.63  E-value=3.3  Score=32.29  Aligned_cols=47  Identities=19%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363           41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK   96 (194)
Q Consensus        41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k   96 (194)
                      ...++|.++++..+.++..++. +++        ...+.+.+.|...++.++...|
T Consensus         5 ~Eiq~L~drLD~~~~Klaaa~~-rgd--------~~~i~qf~~E~~~l~k~I~~lk   51 (118)
T PRK11020          5 NEIKRLSDRLDAIRHKLAAASL-RGD--------AEKYAQFEKEKATLEAEIARLK   51 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-cCC--------HHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888888888888888888 877        6677777777777777777766

>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli

Probab=85.54  E-value=2.6  Score=32.70  Aligned_cols=45  Identities=16%  Similarity=0.286  Sum_probs=24.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhh
Q 029363           39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDL   92 (194)
Q Consensus        39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el   92 (194)
                      +..+..+.+.++.+-+.+|++++. .|+        .+|+.+.|..|.+.+.+|
T Consensus        68 ~q~ki~~~~~kV~ere~eL~eA~~-~G~--------~~KI~K~~~KL~ea~~eL  112 (115)
T PF06476_consen   68 RQQKIAEKQQKVAEREAELKEAQA-KGD--------SDKIAKRQKKLAEAKAEL  112 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hCC--------HHHHHHHHHHHHHHHHHH
Confidence            344555555666666667777777 555        344444444444444443

>PRK06342 transcription elongation factor regulatory protein; Validated

Probab=85.25  E-value=2.8  Score=34.21  Aligned_cols=53  Identities=11%  Similarity=0.167  Sum_probs=38.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363           39 RTNSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK   96 (194)
Q Consensus        39 r~e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k   96 (194)
                      -.+.|++|+++++.+.+++..|.+ -|+ -|-   ++++...++.++.++.+.|..-+
T Consensus        32 T~~G~~~L~~El~~L~~~i~~Ar~-~GD-lsE---ak~~~~~~e~rI~~L~~~L~~A~   84 (160)
T PRK06342         32 TEAGLKALEDQLAQARAAYEAAQA-IED-VNE---RRRQMARPLRDLRYLAARRRTAQ   84 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH-CCC-hhH---HHHHHHHHHHHHHHHHHHHccCE
Confidence            678999999999999999999988 444 221   34455556667777777776555

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=84.68  E-value=7.8  Score=27.14  Aligned_cols=46  Identities=17%  Similarity=0.268  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363           44 KTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK   96 (194)
Q Consensus        44 ~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k   96 (194)
                      +.+++++.++..++++..+ +.+      +-+++.++.+.++++++.++...+
T Consensus         2 ~~i~e~l~~ie~~l~~~~~-~i~------~lE~~~~~~e~~i~~~~~~l~~I~   47 (71)
T PF10779_consen    2 QDIKEKLNRIETKLDNHEE-RID------KLEKRDAANEKDIKNLNKQLEKIK   47 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888666 322      234555566666677777776655

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=80.93  E-value=2.7  Score=34.12  Aligned_cols=68  Identities=16%  Similarity=0.192  Sum_probs=34.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhh-CCCccc-cch---hhhHHhHHHHHHHHHHh--hhhhhhhhhhhHHHHHH
Q 029363           39 RTNSYKTLKSSIDKASKKLETMKIE-NPAKIS-TKK---SKTKKIDRVETSLKESS--RDLSLFKFKSGAVVALV  106 (194)
Q Consensus        39 r~e~y~klq~~~~~~~kkl~k~ke~-~~~~~~-~~k---~~~kkler~e~el~~~~--~el~~~k~ksm~~~~l~  106 (194)
                      ..++++++++|++++.+|+...-.+ +.++-+ .++   |.++++|+.++++...+  -+....+.+-.+.+++.
T Consensus        38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (161)
T PF04420_consen   38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPF  112 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---------
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999988873221 111111 222   34556666666666632  23444444433333333

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=80.59  E-value=13  Score=30.50  Aligned_cols=24  Identities=13%  Similarity=0.469  Sum_probs=15.3

Q ss_pred             hhhHHhHHHHHHHHHHhhhhhhhh
Q 029363           73 SKTKKIDRVETSLKESSRDLSLFK   96 (194)
Q Consensus        73 ~~~kkler~e~el~~~~~el~~~k   96 (194)
                      +.+++++++++|+.+..+|+-..|
T Consensus       158 ~~~~ei~~lk~el~~~~~~~~~Lk  181 (192)
T PF05529_consen  158 KLSEEIEKLKKELEKKEKEIEALK  181 (192)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777666665444

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=80.39  E-value=13  Score=26.72  Aligned_cols=26  Identities=8%  Similarity=0.267  Sum_probs=14.5

Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHH
Q 029363           88 SSRDLSLFKFKSGAVVALVLFVVFGL  113 (194)
Q Consensus        88 ~~~el~~~k~ksm~~~~l~~i~~f~l  113 (194)
                      +++.+-..++|..++++++.++++.+
T Consensus        57 l~r~~~~~~~k~~~i~~~iv~~~~~~   82 (89)
T PF00957_consen   57 LKRKMWWRNYKLYIIIIIIVIIIILI   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence            34444444466666666666666543

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes

Probab=80.28  E-value=6.9  Score=30.19  Aligned_cols=38  Identities=24%  Similarity=0.461  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHH
Q 029363           43 YKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKE   87 (194)
Q Consensus        43 y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~   87 (194)
                      ...+.++++..+++++..+. ...      ++..++|.++..++|
T Consensus        81 ~~~l~~~~~~~~rQl~aE~~-k~~------~~~~r~~~l~~~i~~  118 (118)
T PF08514_consen   81 AKSLSEELEKTQRQLEAEKK-KKR------KNKSRLEELEQKIKE  118 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccc------ccHHHHHHHHHHhcC
Confidence            34556677888888877766 322      223377777776653

The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2lf0_A	123	Uncharacterized protein YIBL; two-domain protein,	82.61

>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}

Probab=82.61  E-value=2.5  Score=32.15  Aligned_cols=47  Identities=15%  Similarity=0.258  Sum_probs=33.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhCCCccccchhhhHHhHHHHHHHHHHhhhhhhhh
Q 029363           41 NSYKTLKSSIDKASKKLETMKIENPAKISTKKSKTKKIDRVETSLKESSRDLSLFK   96 (194)
Q Consensus        41 e~y~klq~~~~~~~kkl~k~ke~~~~~~~~~k~~~kkler~e~el~~~~~el~~~k   96 (194)
                      ...++|.++++..+.++..++. +++        ...+.+.++|...++.++...|
T Consensus        10 ~Eiq~L~drLD~~~rKlaaa~~-rgd--------~~~i~qf~~E~~~l~k~I~~lk   56 (123)
T 2lf0_A           10 NEIKRLSDRLDAIRHQQADLSL-VEA--------ADKYAELEKEKATLEAEIARLR   56 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCT-TTC--------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCC--------HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777888888888777 766        5566666666666666666655

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1k4ta1	72	Eukaryotic DNA topoisomerase I, dispensable insert	92.02

>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Eukaryotic DNA topoisomerase I, dispensable insert domain
family: Eukaryotic DNA topoisomerase I, dispensable insert domain
domain: Eukaryotic DNA topoisomerase I, dispensable insert domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.18  Score=33.52  Aligned_cols=19  Identities=32%  Similarity=0.410  Sum_probs=15.6

Q ss_pred             hhhHHhHHHHHHHHHHhhh
Q 029363           73 SKTKKIDRVETSLKESSRD   91 (194)
Q Consensus        73 ~~~kkler~e~el~~~~~e   91 (194)
                      ++.+++||++++|+.+.-+
T Consensus        46 kKkK~leRL~EQL~KLevq   64 (72)
T d1k4ta1          46 SKKKAVQRLEEQLMKLEVQ   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            5788899999999986544