Citrus Sinensis ID: 029417

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA
cHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEcHHHHccccccccccccEEEEcccEEEEEcccccccccEEEEEEcccccEEEccccEEEEccccccccccccEEEEEEccEEccEEEEEcccccccEEEEEEcccccEEEEEccccccccccHHHHHHHHccccccccccccc
cHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEcccEEEEEEEccccccEEEEEEEccccEEEEEcEEEEEEccccccccccccEEEEEccEEEccEEEEcccccccEEEEEEEEccccEEEEEEccccEcccHHHHHHHHHcccccEEEEEEcc
MAAMAALQSSMtslsissnsffgqrlsfpslspitvkptdkpclIVVRLKRwerkeckpnslpvlhkmhvkagDTVKVIAgcdkgkigeitKVFRHNSTVMVKDINLKTKHVKKREEeeqgqiikieapihssnvmLYSKEMEVASRvghkvlddgtRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA
MAAMAALQSSMTSLSISSNSFFGQRLSFPslspitvkptdkPCLIVVRLkrwerkeckpnslpvlhkmhvkaGDTVKVIAGCdkgkigeitkvfrhnstvmvkdinlktkhvkkreeeeqgqiikieapihssnVMLYSKEMEVASrvghkvlddgtrvrYLIKTgeiidsaenwkklkeanrqektevataa
MAAMAALQssmtslsissnsFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVkkreeeeqgqiikieAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA
************************RLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINL******************IEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENW******************
**************SISSNSFFGQRL******************IVV********************MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLK******************EAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSA*********************
**************SISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKH*********GQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEA************
*************************LSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query193 2.2.26 [Sep-21-2011]
Q02764187 50S ribosomal protein L24 N/A no 0.958 0.989 0.726 1e-73
P11893194 50S ribosomal protein L24 N/A no 0.979 0.974 0.752 2e-68
P92959198 50S ribosomal protein L24 yes no 0.886 0.863 0.716 3e-68
P27683191 50S ribosomal protein L24 N/A no 0.875 0.884 0.668 3e-59
B1XJS8116 50S ribosomal protein L24 yes no 0.575 0.956 0.594 2e-32
Q8DMM1117 50S ribosomal protein L24 yes no 0.585 0.965 0.601 3e-31
B0JHZ2117 50S ribosomal protein L24 yes no 0.559 0.923 0.592 5e-31
Q110B8122 50S ribosomal protein L24 yes no 0.559 0.885 0.592 2e-30
B1WQS1115 50S ribosomal protein L24 yes no 0.564 0.947 0.587 3e-30
O24700113 50S ribosomal protein L24 yes no 0.559 0.955 0.611 4e-30
>sp|Q02764|RK24_TOBAC 50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24 PE=1 SV=1 Back     alignment and function desciption
 Score =  275 bits (703), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 138/190 (72%), Positives = 153/190 (80%), Gaps = 5/190 (2%)

Query: 4   MAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLP 63
           MAALQSS   LS    SFFGQR S P   P  VK T+ PCLI  +LKRWERKECKPNSLP
Sbjct: 1   MAALQSSFAGLS---TSFFGQRFSPPLSLPPLVKSTEGPCLIQAKLKRWERKECKPNSLP 57

Query: 64  VLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQI 123
           VLHKMHVK GDTVK+I+G DKGK+GEIT++ +HNS V+VKD+NLKTKHVK R E+E GQI
Sbjct: 58  VLHKMHVKLGDTVKIISGHDKGKVGEITEIIKHNSKVVVKDVNLKTKHVKSRSEDEPGQI 117

Query: 124 IKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANR 183
           +KIEAPIHSSNVMLYSKE +VASRVGHK LD+G RVRYLIKTGEIIDSAENWK  K    
Sbjct: 118 VKIEAPIHSSNVMLYSKEQKVASRVGHKTLDNGKRVRYLIKTGEIIDSAENWK--KAVKE 175

Query: 184 QEKTEVATAA 193
           +EKT  A AA
Sbjct: 176 KEKTTEAVAA 185
One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
Nicotiana tabacum (taxid: 4097)
>sp|P11893|RK24_PEA 50S ribosomal protein L24, chloroplastic OS=Pisum sativum GN=RPL24 PE=2 SV=1 Back     alignment and function description
>sp|P92959|RK24_ARATH 50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana GN=RPL24 PE=2 SV=2 Back     alignment and function description
>sp|P27683|RK24_SPIOL 50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea GN=RPL24 PE=1 SV=1 Back     alignment and function description
>sp|B1XJS8|RL24_SYNP2 50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplX PE=3 SV=1 Back     alignment and function description
>sp|Q8DMM1|RL24_THEEB 50S ribosomal protein L24 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplX PE=3 SV=1 Back     alignment and function description
>sp|B0JHZ2|RL24_MICAN 50S ribosomal protein L24 OS=Microcystis aeruginosa (strain NIES-843) GN=rplX PE=3 SV=1 Back     alignment and function description
>sp|Q110B8|RL24_TRIEI 50S ribosomal protein L24 OS=Trichodesmium erythraeum (strain IMS101) GN=rplX PE=3 SV=1 Back     alignment and function description
>sp|B1WQS1|RL24_CYAA5 50S ribosomal protein L24 OS=Cyanothece sp. (strain ATCC 51142) GN=rplX PE=3 SV=1 Back     alignment and function description
>sp|O24700|RL24_SYNP6 50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
449463166191 PREDICTED: 50S ribosomal protein L24, ch 0.979 0.989 0.810 1e-83
449523692191 PREDICTED: LOW QUALITY PROTEIN: 50S ribo 0.979 0.989 0.810 1e-83
351723593194 uncharacterized protein LOC100306643 [Gl 0.943 0.938 0.780 3e-78
255563629193 mitochondrial ribosomal protein L24, put 0.906 0.906 0.795 1e-77
224124188194 predicted protein [Populus trichocarpa] 0.974 0.969 0.801 6e-76
351725277193 uncharacterized protein LOC100500009 [Gl 0.943 0.943 0.754 3e-75
400989187 RecName: Full=50S ribosomal protein L24, 0.958 0.989 0.726 6e-72
225461164191 PREDICTED: 50S ribosomal protein L24, ch 0.984 0.994 0.766 4e-69
302143191236 unnamed protein product [Vitis vinifera] 0.984 0.805 0.766 6e-69
357452635194 50S ribosomal protein L24 [Medicago trun 0.979 0.974 0.755 6e-68
>gi|449463166|ref|XP_004149305.1| PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/195 (81%), Positives = 173/195 (88%), Gaps = 6/195 (3%)

Query: 1   MAAMAALQSSMTSLSISSNSFFGQRLSFPSL--SPITVKPTDKPCLIVVRLKRWERKECK 58
           MAAMAALQSSMT+LS+SSNSF GQRL  P++  +PIT K  +KPCLIV++LKRWERKECK
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSK--EKPCLIVMKLKRWERKECK 58

Query: 59  PNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEE 118
           PNSLPV+HKMHVK GDTVKVIAG DKGKIGEITK+F+HNS V+V +INLKTKHVK REEE
Sbjct: 59  PNSLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEE 118

Query: 119 EQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKL 178
           EQGQIIKIEAPIHSSNVMLYSKE +V SRVGHKVL+DG RVRYLIKTGEIIDS ENWKKL
Sbjct: 119 EQGQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKL 178

Query: 179 KEANRQEKTEVATAA 193
           KEAN   K EVAT A
Sbjct: 179 KEAN--SKAEVATTA 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449523692|ref|XP_004168857.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L24, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351723593|ref|NP_001238052.1| uncharacterized protein LOC100306643 [Glycine max] gi|255629161|gb|ACU14925.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255563629|ref|XP_002522816.1| mitochondrial ribosomal protein L24, putative [Ricinus communis] gi|223537900|gb|EEF39514.1| mitochondrial ribosomal protein L24, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224124188|ref|XP_002319267.1| predicted protein [Populus trichocarpa] gi|118484624|gb|ABK94184.1| unknown [Populus trichocarpa] gi|222857643|gb|EEE95190.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351725277|ref|NP_001235551.1| uncharacterized protein LOC100500009 [Glycine max] gi|255628481|gb|ACU14585.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|400989|sp|Q02764.1|RK24_TOBAC RecName: Full=50S ribosomal protein L24, chloroplastic; AltName: Full=CL24; Flags: Precursor gi|170273|gb|AAA34086.1| ribosomal protein L24 [Nicotiana tabacum] gi|170324|gb|AAA34114.1| ribosomal protein L24 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|225461164|ref|XP_002282889.1| PREDICTED: 50S ribosomal protein L24, chloroplastic isoform 1 [Vitis vinifera] gi|359493940|ref|XP_003634697.1| PREDICTED: 50S ribosomal protein L24, chloroplastic isoform 2 [Vitis vinifera] gi|359493942|ref|XP_003634698.1| PREDICTED: 50S ribosomal protein L24, chloroplastic isoform 3 [Vitis vinifera] gi|147860928|emb|CAN78749.1| hypothetical protein VITISV_002445 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143191|emb|CBI20486.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357452635|ref|XP_003596594.1| 50S ribosomal protein L24 [Medicago truncatula] gi|355485642|gb|AES66845.1| 50S ribosomal protein L24 [Medicago truncatula] gi|388513937|gb|AFK45030.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
TAIR|locus:2172154198 RPL24 "plastid ribosomal prote 1.0 0.974 0.612 1.3e-59
TIGR_CMR|BA_0121103 BA_0121 "ribosomal protein L24 0.528 0.990 0.417 2.3e-14
TIGR_CMR|GSU_2846108 GSU_2846 "ribosomal protein L2 0.533 0.953 0.355 1.6e-13
TIGR_CMR|CBU_0249107 CBU_0249 "ribosomal protein L2 0.518 0.934 0.411 9.1e-13
TIGR_CMR|CHY_2298107 CHY_2298 "ribosomal protein L2 0.538 0.971 0.384 1.9e-12
TIGR_CMR|DET_0485103 DET_0485 "ribosomal protein L2 0.533 1.0 0.349 1.9e-12
TIGR_CMR|APH_0291104 APH_0291 "ribosomal protein L2 0.512 0.951 0.349 8.4e-10
TAIR|locus:504954880159 AT5G23535 [Arabidopsis thalian 0.481 0.584 0.372 1.1e-09
UNIPROTKB|P60627105 rplX "50S ribosomal protein L2 0.523 0.961 0.330 7.6e-09
TIGR_CMR|ECH_0420109 ECH_0420 "ribosomal protein L2 0.523 0.926 0.302 1.2e-08
TAIR|locus:2172154 RPL24 "plastid ribosomal protein L24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 120/196 (61%), Positives = 143/196 (72%)

Query:     1 MAAMAALQXXXXXXXXX-XXXFFGQRLSFP-SLSPIT-VKPTDKPCLIVVRLKRWERKEC 57
             MA M+ALQ             F GQRL  P SLS  + VKP + PCL++ +LKRWERKEC
Sbjct:     1 MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query:    58 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXX 117
             KPNSLP+LHKMHVK GDTVKVI+G DKGKIGE+TK+F HNST+++KD+NLKTKH+     
Sbjct:    61 KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query:   118 XXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKK 177
                       APIHSSNVMLYSKE +V SRVGHKVL+DG +VRYLIKTGE+ID+ E WK 
Sbjct:   121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query:   178 LKEANRQEKTEVATAA 193
             LKEA  +E T+VA  +
Sbjct:   181 LKEAKDKETTQVAVTS 196
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015934 "large ribosomal subunit" evidence=ISS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0032544 "plastid translation" evidence=IMP
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
TIGR_CMR|BA_0121 BA_0121 "ribosomal protein L24" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2846 GSU_2846 "ribosomal protein L24" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0249 CBU_0249 "ribosomal protein L24" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2298 CHY_2298 "ribosomal protein L24" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0485 DET_0485 "ribosomal protein L24" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0291 APH_0291 "ribosomal protein L24" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TAIR|locus:504954880 AT5G23535 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P60627 rplX "50S ribosomal protein L24" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0420 ECH_0420 "ribosomal protein L24" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P27683RK24_SPIOLNo assigned EC number0.66860.87560.8848N/Ano
Q02764RK24_TOBACNo assigned EC number0.72630.95850.9893N/Ano
P92959RK24_ARATHNo assigned EC number0.71670.88600.8636yesno
P11893RK24_PEANo assigned EC number0.75260.97920.9742N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
PRK00004105 PRK00004, rplX, 50S ribosomal protein L24; Reviewe 4e-44
TIGR01079104 TIGR01079, rplX_bact, ribosomal protein L24, bacte 3e-39
COG0198104 COG0198, RplX, Ribosomal protein L24 [Translation, 3e-30
CHL0014183 CHL00141, rpl24, ribosomal protein L24; Validated 9e-30
cd0608965 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein 2e-25
PRK1228176 PRK12281, rplX, 50S ribosomal protein L24; Reviewe 3e-18
pfam0046732 pfam00467, KOW, KOW motif 9e-06
PRK01191120 PRK01191, rpl24p, 50S ribosomal protein L24P; Vali 1e-05
cd0038049 cd00380, KOW, KOW: an acronym for the authors' sur 7e-04
smart0073928 smart00739, KOW, KOW (Kyprides, Ouzounis, Woese) m 9e-04
>gnl|CDD|234566 PRK00004, rplX, 50S ribosomal protein L24; Reviewed Back     alignment and domain information 
 Score =  141 bits (359), Expect = 4e-44
 Identities = 52/104 (50%), Positives = 68/104 (65%)

Query: 67  KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKI 126
            M +K GDTV VIAG DKGK G++ KV    + V+V+ +N+  KH K  +E  QG II+ 
Sbjct: 2   MMKIKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVEGVNIVKKHQKPNQENPQGGIIEK 61

Query: 127 EAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 170
           EAPIH SNV L   +   A+RVG K L+DG +VR   K+GE+ID
Sbjct: 62  EAPIHISNVALVDPKTGKATRVGFKFLEDGKKVRVAKKSGEVID 105

Length = 105
>gnl|CDD|233263 TIGR01079, rplX_bact, ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>gnl|CDD|223276 COG0198, RplX, Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|214374 CHL00141, rpl24, ribosomal protein L24; Validated Back     alignment and domain information
>gnl|CDD|240513 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein L26 Back     alignment and domain information
>gnl|CDD|183399 PRK12281, rplX, 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>gnl|CDD|144165 pfam00467, KOW, KOW motif Back     alignment and domain information
>gnl|CDD|234915 PRK01191, rpl24p, 50S ribosomal protein L24P; Validated Back     alignment and domain information
>gnl|CDD|240504 cd00380, KOW, KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese) Back     alignment and domain information
>gnl|CDD|128978 smart00739, KOW, KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 193
KOG1708236 consensus Mitochondrial/chloroplast ribosomal prot 100.0
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 100.0
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 100.0
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 100.0
PTZ00194143 60S ribosomal protein L26; Provisional 99.96
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 99.96
CHL0014183 rpl24 ribosomal protein L24; Validated 99.95
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 99.95
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 99.94
KOG3401145 consensus 60S ribosomal protein L26 [Translation, 99.66
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 98.74
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 97.69
PRK08559153 nusG transcription antitermination protein NusG; V 97.39
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 97.28
PRK05609181 nusG transcription antitermination protein NusG; V 96.71
TIGR00922172 nusG transcription termination/antitermination fac 96.69
COG0250178 NusG Transcription antiterminator [Transcription] 96.43
TIGR01955159 RfaH transcriptional activator RfaH. This model re 95.85
PRK09014162 rfaH transcriptional activator RfaH; Provisional 95.57
TIGR01956258 NusG_myco NusG family protein. This model represen 95.18
PRK0433384 50S ribosomal protein L14e; Validated 93.36
KOG1999 1024 consensus RNA polymerase II transcription elongati 85.97
PTZ00065130 60S ribosomal protein L14; Provisional 85.5
PTZ00471134 60S ribosomal protein L27; Provisional 82.87
>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-43  Score=300.01  Aligned_cols=191  Identities=42%  Similarity=0.597  Sum_probs=171.8

Q ss_pred             Chhhhhhhhhcccccccc-cccccccc-CCCCCCC-cccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEE
Q 029417            1 MAAMAALQSSMTSLSISS-NSFFGQRL-SFPSLSP-ITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVK   77 (193)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~-~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~   77 (193)
                      |+.|+||||++++||+.- ..|.++.+ +|.++.+ .+.+..+++|+.-..+..|+|..+.+...+..++|+++.||+|+
T Consensus         1 M~ts~aL~s~l~s~s~lPs~y~er~y~isP~~~~~~~pr~~adk~~~~~qk~~~w~rrr~~~~e~i~d~dw~ff~GDtVe   80 (236)
T KOG1708|consen    1 MRTSSALASSLTSLSLLPSSYFERQYLISPISLSVTSPRKVADKRCLVLQKNKPWERRRCVPVEPIIDEDWHFFFGDTVE   80 (236)
T ss_pred             CchHHHHHHHhhhhhcCCHHHhhceeeeccccccccCCCChhhhhhhHHhhcCccccccCCCCCCccccceeEecCCEEE
Confidence            889999999999999865 56668887 4666664 34777888999999999999999999998889999999999999


Q ss_pred             EeecCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCC-eeeeecCCCCeeeEEEEEccCC
Q 029417           78 VIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSN-VMLYSKEMEVASRVGHKVLDDG  156 (193)
Q Consensus        78 VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SN-V~Lv~p~~~kptRVg~r~~edG  156 (193)
                      ||.|+||||+|+|++|++++|+|+|+|+|...+|++...+|.+|.|+..|+|||.|| |||+||++.+||+++|+++++|
T Consensus        81 VlvGkDkGkqG~Vtqv~r~~s~VvV~gln~k~r~~gsekeg~pgtivk~EaPlhvsk~VmLvdp~d~q~te~~wr~~e~G  160 (236)
T KOG1708|consen   81 VLVGKDKGKQGEVTQVIRHRSWVVVKGLNTKYRHMGSEKEGEPGTIVKSEAPLHVSKQVMLVDPEDDQPTEVEWRFTEDG  160 (236)
T ss_pred             EEecccCCccceEEEEeecCceEEEcccchhhhhhcccccCCCceEEeecCCceecceeEEECccccCCceeeEEEcCCC
Confidence            999999999999999999999999999999999999998899999999999999999 9999999999999999999999


Q ss_pred             cEEEEEcccCcccccchhh-----h--hhhcccccceeeecc
Q 029417          157 TRVRYLIKTGEIIDSAENW-----K--KLKEANRQEKTEVAT  191 (193)
Q Consensus       157 kKvRv~kksg~~I~~Pe~~-----k--~~~k~~~~~~~~~~~  191 (193)
                      ++|||+.+||++||.||.|     +  -+.+...|.+.++|+
T Consensus       161 ekVRvstrSG~iIpipe~~t~dy~~pe~yiE~e~KdTp~~av  202 (236)
T KOG1708|consen  161 EKVRVSTRSGRIIPIPEKWTADYIKPELYIEAEDKDTPQVAV  202 (236)
T ss_pred             cEEEEEecccccccCcccccccccCchheeecccCCCcHhhh
Confidence            9999999999999999999     3  444445455555554

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>KOG3401 consensus 60S ribosomal protein L26 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>PRK04333 50S ribosomal protein L14e; Validated Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>PTZ00065 60S ribosomal protein L14; Provisional Back     alignment and domain information
>PTZ00471 60S ribosomal protein L27; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
3bbo_W191 Homology Model For The Spinach Chloroplast 50s Subu 5e-52
3mrz_U109 Recognition Of The Amber Stop Codon By Release Fact 1e-09
2j01_Y110 Structure Of The Thermus Thermophilus 70s Ribosome 1e-09
3tve_U102 Crystal Structure Analysis Of Ribosomal Decoding. T 3e-08
1nkw_S115 Crystal Structure Of The Large Ribosomal Subunit Fr 5e-08
3fin_Y101 T. Thermophilus 70s Ribosome In Complex With Mrna, 1e-07
3pyo_U100 Crystal Structure Of A Complex Containing Domain 3 1e-07
1pnu_S113 Crystal Structure Of A Streptomycin Dependent Ribos 3e-07
>pdb|3BBO|W Chain W, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 191 Back     alignment and structure 
Iteration: 1

 Score =  199 bits (507), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 125/172 (72%), Gaps = 3/172 (1%)
Query: 23  GQRLSFPSLSPITVKPTD-KPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAG 81
           GQRL FPS + + VK     PCLIV+R+KRWERK+CKPNSLP LHK HVK GDTVKVI+G
Sbjct: 22  GQRL-FPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISG 80
Query: 82  CDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKE 141
            +KGKIGEI+K+ +HNSTV++KD+N KTKHV               A IHSSNVML  KE
Sbjct: 81  GEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKE 140
Query: 142 MEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA 193
            EVA RVGHK+L+D  +VRYLIKTGEI+D+ + WK+++     E T VA AA
Sbjct: 141 QEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQNKKESE-TAVAVAA 191
>pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 109 Back     alignment and structure
>pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 110 Back     alignment and structure
>pdb|3TVE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 102 Back     alignment and structure
>pdb|1NKW|S Chain S, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 115 Back     alignment and structure
>pdb|3FIN|Y Chain Y, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 101 Back     alignment and structure
>pdb|3PYO|U Chain U, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 100 Back     alignment and structure
>pdb|1PNU|S Chain S, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 113 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 2e-74
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 1e-43
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 4e-40
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 7e-39
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 4e-30
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 1e-11
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 5e-07
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 1e-06
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 191 Back     alignment and structure
 Score =  221 bits (564), Expect = 2e-74
 Identities = 123/192 (64%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 1   MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPN 60
           MAAM  LQSS TSLS+SSNSF GQRL     +         PCLIV+R+KRWERK+CKPN
Sbjct: 1   MAAMV-LQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPN 59

Query: 61  SLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQ 120
           SLP LHK HVK GDTVKVI+G +KGKIGEI+K+ +HNSTV++KD+N KTKHVK +EE EQ
Sbjct: 60  SLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQ 119

Query: 121 GQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEA IHSSNVML  KE EVA RVGHK+L+D  +VRYLIKTGEI+D+ + WK+++ 
Sbjct: 120 GQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQN 179

Query: 181 ANRQEKTEVATA 192
               E      A
Sbjct: 180 KKESETAVAVAA 191
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Length = 110 Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Length = 115 Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Length = 96 Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U ... Length = 102 Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Length = 120 Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Length = 127 Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Length = 135 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 100.0
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 100.0
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 100.0
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 100.0
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 100.0
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 99.97
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 99.97
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 99.96
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 99.96
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 99.96
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 99.96
1nz9_A58 Transcription antitermination protein NUSG; transc 98.22
3p8b_B152 Transcription antitermination protein NUSG; transc 97.49
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 97.05
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 96.8
2jvv_A181 Transcription antitermination protein NUSG; transc 96.7
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 96.64
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 95.25
1m1h_A248 Transcription antitermination protein NUSG; transc 94.73
3iz5_N134 60S ribosomal protein L14 (L14E); eukaryotic ribos 89.88
2joy_A96 50S ribosomal protein L14E; protein solution struc 89.84
4a18_N144 RPL27, ribosomal protein L22; ribosome, eukaryotic 89.31
4a18_F126 RPL14; ribosome, eukaryotic initiation factor 6, E 89.24
3izc_N138 60S ribosomal protein RPL14 (L14E); eukaryotic rib 88.19
3j21_583 50S ribosomal protein L14E; archaea, archaeal, KIN 87.02
2e70_A71 Transcription elongation factor SPT5; KOW motif, s 86.14
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=3e-72  Score=468.77  Aligned_cols=191  Identities=64%  Similarity=0.969  Sum_probs=108.4

Q ss_pred             ChhhhhhhhhccccccccccccccccCCCCCCCcccCCCCcceEEecCCCHHHHHhhCCCCCCcccccceeeCCEEEEee
Q 029417            1 MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA   80 (193)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~lR~k~~~rs~p~~~k~~IkkGD~V~VI~   80 (193)
                      |||| ||||||++||||+|+||||||+|.+.++.+.+++.++|+++++|++|||++|++|++|+..+|+|++||+|+||+
T Consensus         1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lr~k~~~rslP~~~kmkIkKGD~V~VIa   79 (191)
T 3bbo_W            1 MAAM-VLQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVIS   79 (191)
T ss_dssp             ---------------------------------------------------------------CTTSCCSCCSSCEEECS
T ss_pred             Ccch-hhhhhhhccccccccccCcccCCCccccCcccccCCceeeEecccHHHHHHhCCCCCCccccCeeecCCEEEEee
Confidence            8999 999999999999999999999988876667999999999999999999999999999998999999999999999


Q ss_pred             cCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCCCeeeEEEEEccCCcEEE
Q 029417           81 GCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVR  160 (193)
Q Consensus        81 GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~kptRVg~r~~edGkKvR  160 (193)
                      |+||||+|+|++|++++|+|+|||||++++|+||++.+++|||+++|+|||+|||+|+||++++|+||+|++++||+|||
T Consensus        80 GkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp~~gkptRVg~k~~edGkKVR  159 (191)
T 3bbo_W           80 GGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVR  159 (191)
T ss_dssp             SSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSSSCCCCCCCCCSSSCCCCCS
T ss_pred             cCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEeccCCCceEEEEEEccCCcEEE
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999989999999


Q ss_pred             EEcccCcccccchhhhhhhcccccceeeeccc
Q 029417          161 YLIKTGEIIDSAENWKKLKEANRQEKTEVATA  192 (193)
Q Consensus       161 v~kksg~~I~~Pe~~k~~~k~~~~~~~~~~~~  192 (193)
                      ||++||++||.|+.|+++.++++++|+++|+|
T Consensus       160 v~KksGe~I~~p~~~~~~~~~~~~~~~~~~~~  191 (191)
T 3bbo_W          160 YLIKTGEIVDTPDRWKEIQNKKESETAVAVAA  191 (191)
T ss_dssp             SSCCSSSCCCCCC-------------------
T ss_pred             EEecCCCCcCChhHHHHHHhcccchhhhhhcC
Confidence            99999999999999999999988888777654
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Back     alignment and structure
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Back     alignment and structure
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Back     alignment and structure
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Back     alignment and structure
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Back     alignment and structure
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7 Back     alignment and structure
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 193
d2j01y1101 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) { 2e-32
d2zjrr1110 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) { 3e-30
d2gycs199 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) { 8e-28
d1vqot1119 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) { 1e-19
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Length = 101 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

 Score =  110 bits (276), Expect = 2e-32
 Identities = 36/98 (36%), Positives = 56/98 (57%)

Query: 67  KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKI 126
           KMHVK GDTV V +G  KG++G++ +V      V+V+ +N+  K V+   +  QG  I+ 
Sbjct: 3   KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEK 62

Query: 127 EAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIK 164
           EAP+H+S V          +RV  K L++G ++R   K
Sbjct: 63  EAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAK 100
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Length = 110 Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 100.0
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 100.0
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 100.0
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 99.97
d1nppa258 N-utilization substance G protein NusG, C-terminal 97.81
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 97.69
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 96.96
d2joya196 Ribosomal protein L14e {Sulfolobus solfataricus [T 85.9
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.7e-40  Score=255.04  Aligned_cols=103  Identities=34%  Similarity=0.507  Sum_probs=99.3

Q ss_pred             cccccceeeCCEEEEeecCCCCeeeEEEEEEccCCEEEEeceeeeeeeecCCcccCCceeEEEeecCcCCCeeeeecCCC
Q 029417           64 VLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEME  143 (193)
Q Consensus        64 ~~~k~~IkkGD~V~VI~GkdKGK~GkV~~V~~~~n~ViVEGvN~~kkhvK~~~~~~~GgIi~~E~PIh~SNV~Lv~p~~~  143 (193)
                      ...+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+++||+||++++++|||+++|+|||+|||||+||.++
T Consensus         7 ~~~K~kikkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeGvN~~kkh~Kp~~~~~~Ggiv~~E~PIhiSNV~lvdp~~~   86 (110)
T d2zjrr1           7 HNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETG   86 (110)
T ss_dssp             TTSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSB
T ss_pred             ccceeeeeCCCEEEEeecCCCCcceEEEEEECCCCEEEEeCcEEEEEEecccccCCCCCeEeeeeeEEhhhEEEEcCCCC
Confidence            34689999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             CeeeEEEEEccCCcEEEEEcccCc
Q 029417          144 VASRVGHKVLDDGTRVRYLIKTGE  167 (193)
Q Consensus       144 kptRVg~r~~edGkKvRv~kksg~  167 (193)
                      +|+||+|++ +||+|+|||++||+
T Consensus        87 k~trv~~~~-~dGkKvRv~kksGe  109 (110)
T d2zjrr1          87 KATRVRKQI-VDGKKVRVAVASGK  109 (110)
T ss_dssp             CCCCCCCCC-SCTTSCCCCSSSCC
T ss_pred             CceEEEEEE-eCCeEEEEEecCCC
Confidence            999999987 79999999999997
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure