Citrus Sinensis ID: 029467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MSQGDSKKLEGDAPSASSSSDGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKLRKEES
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHEEEEHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHEEEEEEHHHHHHHHHHccccHHHccccccccccccccccccccccEccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
msqgdskklegdapsassssdgrkeriIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRvsrktgpddlvnsaiagfgsgallgrlqggqrgalRYSVIFAVVGTTVDYATLRLAPIIRNfreshkdgdwlklpewspiqvlDEEALAEKKAREQKLYAQTQQALGKLRKEES
Flexible Loop (DISEMBL)
msqgdskklegdapsassssdgrkeRIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQqalgklrkees
Low Complexity Region (SEG)
MSQGDSKKLEGDAPsassssDGRKERIIVPAIlaglvggvsgllsKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSgallgrlqggqrgalrYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKLRKEES
Disordered region (IsUnstruct)
*************************RIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLD******************************
Disordered Region (DISOPRED)
***************************IVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVR*********LVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPI************WLKLPEWSPIQVLDEE****************************
Disordered Region (DISEMBL)
**********************RKERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQT************
Disordered Region (DISPRO)
********************DGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQGDSKKLEGDAPSASSSSDGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKxxxxxxxxxxxxxxxxxxxxxES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
224069860	201	predicted protein [Populus trichocarpa]	0.989	0.950	0.684	4e-70
449464128	197	PREDICTED: uncharacterized protein LOC10	0.984	0.964	0.671	7e-68
359495519	193	PREDICTED: uncharacterized protein LOC10	0.870	0.870	0.709	3e-65
255583982	203	protein translocase, putative [Ricinus c	0.974	0.926	0.646	2e-60
351723463	203	uncharacterized protein LOC100526920 [Gl	0.875	0.832	0.589	6e-50
297835600	189	mitochondrial import inner membrane tran	0.948	0.968	0.512	1e-47
18404423	189	Mitochondrial import inner membrane tran	0.948	0.968	0.512	2e-47
21554035	189	unknown [Arabidopsis thaliana]	0.823	0.841	0.562	6e-47
326495594	196	predicted protein [Hordeum vulgare subsp	0.968	0.954	0.520	3e-42
115457958	197	Os04g0376100 [Oryza sativa Japonica Grou	0.911	0.893	0.565	3e-41

>gi|224069860|ref|XP_002303058.1| predicted protein [Populus trichocarpa] gi|222844784|gb|EEE82331.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/203 (68%), Positives = 159/203 (78%), Gaps = 12/203 (5%)

Query: 1   MSQGDSKKLEGDAPSA-----SSSSDGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLAN 55
           M     K LE +A +      SS S+  KERI++P +LAG+ GG  GL+SKHRKVHGLAN
Sbjct: 1   MGSSGMKPLEENAKAPPPPPPSSFSENWKERILIPTLLAGITGGGVGLVSKHRKVHGLAN 60

Query: 56  ISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALR 115
           IS TYATN SIVT CYCGAREFVRV RK+ PDDLVNSA+AGFGSGALLGRLQGGQ GA R
Sbjct: 61  ISTTYATNFSIVTGCYCGAREFVRVVRKSEPDDLVNSAVAGFGSGALLGRLQGGQFGAFR 120

Query: 116 YSVIFAVVGTTVDYATLRLAPIIRNFRES-----HKDGDWLKLPEWSPIQVLDEEALAEK 170
           YSVIFAVVGTTVD+AT++L P + NF+ES      K   WLKLPEWSPIQVLDEEALA K
Sbjct: 121 YSVIFAVVGTTVDFATIKLRPALSNFKESIFKEKEKKPGWLKLPEWSPIQVLDEEALAAK 180

Query: 171 KAREQKLYAQTQQALGKLRKEES 193
           +ARE++LYA++  ALGKL KEES
Sbjct: 181 EAREKELYARS--ALGKLSKEES 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464128|ref|XP_004149781.1| PREDICTED: uncharacterized protein LOC101211202 [Cucumis sativus] gi|449529275|ref|XP_004171626.1| PREDICTED: uncharacterized protein LOC101232073 [Cucumis sativus]

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 160/198 (80%), Gaps = 8/198 (4%)

Query: 1   MSQGDSKKLEGDAPS----ASSSSDGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANI 56
           M   D K    D P      SS   G KERI  P +LAG+VGG +GLLSK+RKVHGLANI
Sbjct: 1   MDSPDPKTPNSDTPPFSSSTSSDYGGWKERIFYPTLLAGIVGGGAGLLSKYRKVHGLANI 60

Query: 57  SATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRY 116
           SATYATNLSIV ACYCGAREFVRVSR++ PDDL+NSAIAGFG+GALLGRLQGG+ G++RY
Sbjct: 61  SATYATNLSIVAACYCGAREFVRVSRRSEPDDLMNSAIAGFGTGALLGRLQGGRLGSVRY 120

Query: 117 SVIFAVVGTTVDYATLRLAPIIRNFRESHKDG--DWLKLPEWSPIQVLDEEALAEKKARE 174
           S++F +VGTTVDYATL+L P +R+++ES  +G   W+KLPEWSPIQVLDEEALA K+ARE
Sbjct: 121 SLMFTIVGTTVDYATLKLKPTLRSYKESIIEGSSSWMKLPEWSPIQVLDEEALAAKQARE 180

Query: 175 QKLYAQTQQALGKLRKEE 192
           Q+LYA  Q+ALG+L K++
Sbjct: 181 QQLYA--QRALGQLNKKD 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495519|ref|XP_002265905.2| PREDICTED: uncharacterized protein LOC100245423 [Vitis vinifera] gi|296085621|emb|CBI29410.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/172 (70%), Positives = 144/172 (83%), Gaps = 4/172 (2%)

Query: 24  KERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRK 83
           KER  +P +LAG+VGG +GL+SK+RKVHGLANISATYA N +IVT CYCGAREFVR +R 
Sbjct: 24  KERFFIPTLLAGIVGGGTGLVSKYRKVHGLANISATYAANFAIVTGCYCGAREFVRRNRG 83

Query: 84  TGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRNFRE 143
           TGPDDL++SA+ GFGSGA+LG LQGG+ GA+RYSV+FAV GT+VD+A L+L P+ +NF E
Sbjct: 84  TGPDDLISSAVGGFGSGAILGCLQGGRAGAVRYSVMFAVAGTSVDFAILKLKPVWKNFSE 143

Query: 144 --SHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKLRKEES 193
             S K  DWLKLPEWSPIQVLDEEALA KKAREQKLY   Q++LG L KEES
Sbjct: 144 SISQKSEDWLKLPEWSPIQVLDEEALAAKKAREQKLYG--QRSLGSLNKEES 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583982|ref|XP_002532737.1| protein translocase, putative [Ricinus communis] gi|223527514|gb|EEF29639.1| protein translocase, putative [Ricinus communis]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 154/201 (76%), Gaps = 13/201 (6%)

Query: 6   SKKLEGDAPSASSS-------SDGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANISA 58
           SK L+G+A             S+  KERI++P ILAG+ GG  GL+SKHR+ HGLA+IS 
Sbjct: 3   SKPLQGEATHPPPPPSSSSSFSENWKERILIPTILAGIGGGGVGLVSKHRQTHGLASIST 62

Query: 59  TYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSV 118
            YATN +IVT CYCGAREFVRVSRK+ PDDLVNSA AGFG+GALLGRLQGGQ GA RYS+
Sbjct: 63  AYATNFAIVTGCYCGAREFVRVSRKSEPDDLVNSAFAGFGTGALLGRLQGGQFGAFRYSI 122

Query: 119 IFAVVGTTVDYATLRLAPIIRNFRES-----HKDGDWLKLPEWSPIQVLDEEALAEKKAR 173
           IFAVVGTTVD+AT++L P +R+F++S      K G WLKLP W PIQVLDEEALA K+ R
Sbjct: 123 IFAVVGTTVDFATIKLKPKLRSFKQSLYGDKEKKGGWLKLPVWFPIQVLDEEALAAKEVR 182

Query: 174 EQKLYAQ-TQQALGKLRKEES 193
           E++LY Q  Q+ALGKL KEES
Sbjct: 183 EKQLYEQRMQRALGKLSKEES 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723463|ref|NP_001236000.1| uncharacterized protein LOC100526920 [Glycine max] gi|255631151|gb|ACU15941.1| unknown [Glycine max]

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/178 (58%), Positives = 134/178 (75%), Gaps = 9/178 (5%)

Query: 24  KERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRK 83
           K RI++P +LAG+ G  +GL+SKHR+  GLA + + YA N +IVT CYCGAREFV  +RK
Sbjct: 27  KSRIVIPTLLAGVAGAGAGLISKHRRTLGLATVCSNYAVNFTIVTGCYCGAREFVAATRK 86

Query: 84  TGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRN--- 140
           TGPDD++NSA+AGFG+GALLGRLQGGQ GA+RYSV+FAVVGTT D+A L+L   +R+   
Sbjct: 87  TGPDDILNSAVAGFGTGALLGRLQGGQLGAIRYSVMFAVVGTTADFAILKLKDALRDHTK 146

Query: 141 -----FRESHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKLRKEES 193
                   S K G WLKLPEW PIQVLDEEALA K+A+E++ + Q +  +  LR+EES
Sbjct: 147 TIYQHIENSKKSGTWLKLPEWFPIQVLDEEALAAKRAQEEQ-FLQQRARIRSLREEES 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835600|ref|XP_002885682.1| mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis lyrata subsp. lyrata] gi|297331522|gb|EFH61941.1| mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 139/197 (70%), Gaps = 14/197 (7%)

Query: 1   MSQGDSKKLEGDAPSASSSSDGRKE------RIIVPAILAGLVGGVSGLLSKHRKVHGLA 54
           M+ GD K  E      S  +   +E      R+++ ++LAG++GG +GL+SKHR  H   
Sbjct: 1   MASGDRKSPEQTNQPLSPPTPIVQETGTPTKRVLITSLLAGVIGGGAGLVSKHRIAH--P 58

Query: 55  NISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGAL 114
           NI   YATN +IV  CYCGARE VR++R++  DDL+NSAI G  SGALLGRLQGG +GA+
Sbjct: 59  NIPTVYATNCAIVAGCYCGARESVRITRRSEHDDLMNSAIGGLFSGALLGRLQGGPQGAI 118

Query: 115 RYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKKARE 174
           RYS++FA VGT  DYA+L+  P++    ES+++ +  KLPEWSPI+VLDEEALA+KKA+E
Sbjct: 119 RYSLVFAAVGTAFDYASLKAKPML----ESYRNMESFKLPEWSPIKVLDEEALAKKKAQE 174

Query: 175 QKLYAQTQQALGKLRKE 191
           +K++   ++ LGKL KE
Sbjct: 175 EKIFP--ERVLGKLNKE 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404423|ref|NP_566759.1| Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] gi|9294168|dbj|BAB02070.1| unnamed protein product [Arabidopsis thaliana] gi|89213243|gb|ABD64061.1| At3g25120 [Arabidopsis thaliana] gi|208879524|gb|ACI31307.1| At2g45250 [Arabidopsis thaliana] gi|332643460|gb|AEE76981.1| Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 138/197 (70%), Gaps = 14/197 (7%)

Query: 1   MSQGDSKKLEG-----DAPSASSSSDGRK-ERIIVPAILAGLVGGVSGLLSKHRKVHGLA 54
           M+ GD K  E        P+     +G   +R+++ ++LAG++GG +GL+SKHR  H   
Sbjct: 1   MALGDRKSPEQTNQALSPPTPIVQENGTPTKRVLITSLLAGVIGGGAGLVSKHRIAH--P 58

Query: 55  NISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGAL 114
           NI   YA N +IV  CYCGARE VR++R++  DDL+NSAI G  SGALLGRLQGG +GA+
Sbjct: 59  NIPTVYAANFAIVAGCYCGARESVRITRRSEHDDLMNSAIGGLFSGALLGRLQGGPKGAI 118

Query: 115 RYSVIFAVVGTTVDYATLRLAPIIRNFRESHKDGDWLKLPEWSPIQVLDEEALAEKKARE 174
           RYS++FA VGT  DYATL+  P++    ES+++ +  KLPEWSPI+VLDEEALA+KKA E
Sbjct: 119 RYSLVFAAVGTAFDYATLKGKPML----ESYRNMESFKLPEWSPIKVLDEEALAKKKAHE 174

Query: 175 QKLYAQTQQALGKLRKE 191
           +K++   ++ LGKL KE
Sbjct: 175 EKIFP--ERVLGKLNKE 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554035|gb|AAM63116.1| unknown [Arabidopsis thaliana]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 127/167 (76%), Gaps = 8/167 (4%)

Query: 25  ERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKT 84
           +R+++ ++LAG++GG +GL+SKHR  H   NI   YA N +IV  CYCGARE VR++R++
Sbjct: 31  KRVLITSLLAGVIGGGAGLVSKHRIAH--PNIPTVYAANFAIVAGCYCGARESVRITRRS 88

Query: 85  GPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLRLAPIIRNFRES 144
             DDL+NSAI G  SGALL RLQGG +GA+RYS++FA VGT  DYATL+  PI+    ES
Sbjct: 89  EHDDLMNSAIGGLFSGALLARLQGGPKGAIRYSLVFAAVGTAFDYATLKGKPIL----ES 144

Query: 145 HKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKLRKE 191
           +++ +  KLPEWSPI+VLDEEALA+KKA E+K++   ++ LGKL KE
Sbjct: 145 YRNMESFKLPEWSPIKVLDEEALAKKKAHEEKIFP--ERVLGKLNKE 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326495594|dbj|BAJ85893.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 129/192 (67%), Gaps = 5/192 (2%)

Query: 4   GDSKKLEGDAPSASSS-SDGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYAT 62
           GD +      P A++  S   KERI+VP + AG+VG   GLLS+HR   G    +ATYA 
Sbjct: 6   GDGEATGAGTPEAAAPFSADWKERILVPVVAAGVVGAGFGLLSRHRARLGPIRAAATYAA 65

Query: 63  NLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAV 122
           NLSIV  CY GARE  R +R T PDDL+NS + G  SGA+LGR+QGG  GA++Y+V  AV
Sbjct: 66  NLSIVAGCYGGARELARDARATTPDDLMNSVVGGLASGAVLGRIQGGHFGAVKYAVTLAV 125

Query: 123 VGTTVDYATLRLAPIIRNFRE--SHKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQ 180
            GT +DY  ++L P   +++E  S    DW  +PEWSPIQVLDEEALA+K+ RE+ L+A 
Sbjct: 126 AGTALDYFAMKLRPQWLDWKEHLSVDTKDWFTVPEWSPIQVLDEEALAKKREREKLLFA- 184

Query: 181 TQQALGKLRKEE 192
            Q+ALGK+ KEE
Sbjct: 185 -QRALGKVSKEE 195

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115457958|ref|NP_001052579.1| Os04g0376100 [Oryza sativa Japonica Group] gi|38346114|emb|CAE04592.2| OSJNBb0006N15.9 [Oryza sativa Japonica Group] gi|113564150|dbj|BAF14493.1| Os04g0376100 [Oryza sativa Japonica Group] gi|125590093|gb|EAZ30443.1| hypothetical protein OsJ_14491 [Oryza sativa Japonica Group] gi|215734903|dbj|BAG95625.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/184 (56%), Positives = 130/184 (70%), Gaps = 8/184 (4%)

Query: 14  PSASSSSDGRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANISATYATNLSIVTACYCG 73
           P+A  S+D  KERI++PA +AG+VG   GLLS+HR   G A  +ATYA NL+IV  CY G
Sbjct: 16  PAAPFSAD-WKERILLPAAVAGVVGAGFGLLSRHRARLGAARATATYAANLAIVAGCYGG 74

Query: 74  AREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATLR 133
           ARE  R +R + PDD +NS + G  SGA+LGRLQGG  GA++Y+V FA  GT +DYA L+
Sbjct: 75  ARELARDARASTPDDPMNSVVGGLASGAVLGRLQGGHFGAVKYAVTFAAAGTALDYAALK 134

Query: 134 LAPIIRNFRESHK-----DGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKL 188
           L+P I     + K     D DW  LPEWSPIQVLDEEALA+K+ARE+KL+A  Q+AL KL
Sbjct: 135 LSPQINGKWHALKEHFSGDKDWFTLPEWSPIQVLDEEALAKKRAREEKLFA--QRALSKL 192

Query: 189 RKEE 192
            KEE
Sbjct: 193 SKEE 196

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2090300	189	AT3G25120 "AT3G25120" [Arabido	0.823	0.841	0.437	4.2e-31

TAIR|locus:2090300 AT3G25120 "AT3G25120" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 73/167 (43%), Positives = 101/167 (60%)

Query:    25 ERIIVPAIXXXXXXXXXXXXXKHRKVHGLANISATYATNLSIVTACYCGAREFVRVSRKT 84
             +R+++ ++             KHR  H   NI   YA N +IV  CYCGARE VR++R++
Sbjct:    31 KRVLITSLLAGVIGGGAGLVSKHRIAH--PNIPTVYAANFAIVAGCYCGARESVRITRRS 88

Query:    85 GPDDLVNSAIAGFGSXXXXXXXXXXXXXXXXYSVIFAVVGTTVDYATLRLAPIIRNFRES 144
               DDL+NSAI G  S                YS++FA VGT  DYATL+  P++    ES
Sbjct:    89 EHDDLMNSAIGGLFSGALLGRLQGGPKGAIRYSLVFAAVGTAFDYATLKGKPML----ES 144

Query:   145 HKDGDWLKLPEWSPIQVLDEEALAEKKAREQKLYAQTQQALGKLRKE 191
             +++ +  KLPEWSPI+VLDEEALA+KKA E+K++ +  + LGKL KE
Sbjct:   145 YRNMESFKLPEWSPIKVLDEEALAKKKAHEEKIFPE--RVLGKLNKE 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      193       158   0.00085  106 3  11 22  0.38    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.93u 0.17s 12.10t   Elapsed:  00:00:01
  Total cpu time:  11.93u 0.17s 12.10t   Elapsed:  00:00:01
  Start:  Fri May 10 22:23:28 2013   End:  Fri May 10 22:23:29 2013

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	5e-11

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 57.3 bits (139), Expect = 5e-11
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 25/129 (19%)

Query: 22  GRKERIIVPAILAGLVGGVSGLLSKHRKVHGLANI--------------------SATYA 61
              ERI+       L+G V G        HGL N                       ++ 
Sbjct: 1   PCPERIVYDTGGGFLMGAVYGGFFGAP--HGLVNALRSGPLKLRLNGVLNATGRRGPSHG 58

Query: 62  TNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFA 121
            N ++    Y G    +   R  G +D  NS IAG  +GA+LG L+GG + A   + + A
Sbjct: 59  NNFAVFGGLYSGIECALEKLR--GKEDPWNSIIAGALTGAVLG-LRGGPKAAAVGAAVGA 115

Query: 122 VVGTTVDYA 130
                ++  
Sbjct: 116 AFSAAIEGL 124

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.15
PTZ00236	164	mitochondrial import inner membrane translocase su	98.61
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	98.59
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	98.48
KOG3225	168	consensus Mitochondrial import inner membrane tran	98.22
KOG1652	183	consensus Mitochondrial import inner membrane tran	96.58
PF13436	118	Gly-zipper_OmpA: Glycine-zipper containing OmpA-li	94.8
KOG3324	206	consensus Mitochondrial import inner membrane tran	94.42
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	90.31
PF13488	46	Gly-zipper_Omp: Glycine zipper	82.71
TIGR03789	239	pdsO proteobacterial sortase system OmpA family pr	82.49
COG3918	153	Predicted membrane protein [Function unknown]	81.1

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.15  E-value=7e-11  Score=89.89  Aligned_cols=107  Identities=26%  Similarity=0.280  Sum_probs=87.2

Q ss_pred             CcccchhhhhHHhhhhhchhhhhhhchh-------c-------ccchhh----hhhhhhhhhhhhhhhhhHHHHHHHHhh
Q 029467           22 GRKERIIVPAILAGLVGGVSGLLSKHRK-------V-------HGLANI----SATYATNLSIVTACYCGAREFVRVSRK   83 (193)
Q Consensus        22 ~w~~rilip~l~AG~~GggaGll~~~~~-------~-------~~~~~~----aa~~a~N~~Iv~scf~garE~~r~~R~   83 (193)
                      .|.+|++..+....+.|...|.+.+...       .       ....+-    +..++.+|..++.+|.+.+-+.+..|.
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4889999999999999998888888651       1       111222    223899999999999999999999995


Q ss_pred             cCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHH
Q 029467           84 TGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYAT  131 (193)
Q Consensus        84 t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~  131 (193)
                        .||+.|+++||+++|++++. +.|+...+.++++++++.+.++|.-
T Consensus        81 --k~D~~N~~~aG~~aGa~~~~-~~g~~~~~~~~~~~a~~~~~~~~~~  125 (128)
T PF02466_consen   81 --KDDPWNSAIAGAAAGAVLGL-RSGPRGMASGAALGAAFAAAVEYYG  125 (128)
T ss_pred             --ccccchhHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHHHHHHh
Confidence              49999999999999998887 5579888888888888888887754

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=98.61  E-value=1.2e-07  Score=79.11  Aligned_cols=105  Identities=20%  Similarity=0.215  Sum_probs=76.2

Q ss_pred             hhhHHhhhhhchhhhhhhchhc----ccc-------hhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhh
Q 029467           29 VPAILAGLVGGVSGLLSKHRKV----HGL-------ANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGF   97 (193)
Q Consensus        29 ip~l~AG~~GggaGll~~~~~~----~~~-------~~~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~   97 (193)
                      ..+...|.++|+++.+.+.-++    +.+       ..=+-.++.||.+++..|.+..-.+...|..  ||+.||+++|+
T Consensus        20 G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K--~D~~Nsi~AG~   97 (164)
T PTZ00236         20 GGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGK--EDHWNAIASGF   97 (164)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc--CchHHHHHHHH
Confidence            4556777777777766554442    211       1123578899999999999999999999955  99999999999


Q ss_pred             hhhhhhhhhcCCCCCchhHHHHHHHHhh---hHHHHHhhhch
Q 029467           98 GSGALLGRLQGGQRGALRYSVIFAVVGT---TVDYATLRLAP  136 (193)
Q Consensus        98 ~SGa~lGrlqGG~~~a~~yav~fA~vGt---g~~~a~~k~~~  136 (193)
                      +||++|+. ++|+..+...+++++++.+   ++..+.+|+..
T Consensus        98 ~TGa~l~~-r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~  138 (164)
T PTZ00236         98 FTGGVLAI-RGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM  138 (164)
T ss_pred             HHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999976 5558777777777766633   44555556553

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=98.59  E-value=1.2e-07  Score=79.26  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=60.4

Q ss_pred             hhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHH
Q 029467           55 NISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDY  129 (193)
Q Consensus        55 ~~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~  129 (193)
                      .-+-.++.||.+++..|++..-.+...|..  ||+.||+++|+++|++|+. ++|+.-++.++++++++=+.+++
T Consensus        55 ~rap~~g~~Fav~g~lys~~ec~i~~~R~K--eD~~NsiiAG~~TGa~l~~-r~G~~a~~~~aa~gg~~la~ie~  126 (170)
T TIGR00980        55 TRAPVLGGNFAVWGGLFSTIDCAVVAIRKK--EDPWNSIISGFLTGAALAV-RGGPRAMRGSAILGACILAVIEG  126 (170)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHHHHH
Confidence            344567999999999999999999999965  9999999999999999998 66688888888888877444443

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=98.48  E-value=3.4e-07  Score=74.75  Aligned_cols=107  Identities=22%  Similarity=0.313  Sum_probs=78.5

Q ss_pred             CCCCCCCCCcccchhhhh----HHhhhhhchhhhhhhchhcc--------------cchhhhhhhhhhhhhhhhhhhhHH
Q 029467           14 PSASSSSDGRKERIIVPA----ILAGLVGGVSGLLSKHRKVH--------------GLANISATYATNLSIVTACYCGAR   75 (193)
Q Consensus        14 ~~~~~~s~~w~~rilip~----l~AG~~GggaGll~~~~~~~--------------~~~~~aa~~a~N~~Iv~scf~gar   75 (193)
                      |+....+-+|.|.+.--+    ++..++|+..|++.+.+...              .....+..++-||.+++..|++..
T Consensus        21 ~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e  100 (149)
T TIGR00983        21 LTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGIN  100 (149)
T ss_pred             CCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            344456677888665443    35556677778888777531              123456788999999999999999


Q ss_pred             HHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHH
Q 029467           76 EFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVV  123 (193)
Q Consensus        76 E~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~v  123 (193)
                      -.+...|..  ||+.||++||++||+++..=+| +..++.++++.+++
T Consensus       101 ~~i~~~R~k--~D~~Nsv~AGa~TGal~~~~~G-~r~~~~g~~~G~~l  145 (149)
T TIGR00983       101 SIIEATRGK--HDDFNSVAAGALTGALYKSTRG-LRGMARSGALGATA  145 (149)
T ss_pred             HHHHHHhcc--chhhHhHHHHHHHHHHHHhccC-hHHHHHHhHHHHHH
Confidence            999999976  9999999999999999988544 75555555554444

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=9.9e-07  Score=74.12  Aligned_cols=99  Identities=26%  Similarity=0.324  Sum_probs=75.9

Q ss_pred             hhhhHHhhhhhchhhhhhh----chh-ccc----------------chhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCC
Q 029467           28 IVPAILAGLVGGVSGLLSK----HRK-VHG----------------LANISATYATNLSIVTACYCGAREFVRVSRKTGP   86 (193)
Q Consensus        28 lip~l~AG~~GggaGll~~----~~~-~~~----------------~~~~aa~~a~N~~Iv~scf~garE~~r~~R~t~p   86 (193)
                      .+.++++||.|.++|.+-+    .-. .|+                +.--.-+|+-||.+++..|.|...++...|+.  
T Consensus        43 ~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK--  120 (168)
T KOG3225|consen   43 AVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAK--  120 (168)
T ss_pred             hHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhh--
Confidence            3447788888877776653    222 011                11224489999999999999999999999999  


Q ss_pred             CCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHH
Q 029467           87 DDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDY  129 (193)
Q Consensus        87 dd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~  129 (193)
                      .||.|++++|+++|+-++.=. ||--+.-.+..|++.++.+++
T Consensus       121 ~D~~NgaiaG~vtGg~l~~ra-Gp~a~~~G~agfa~fS~~id~  162 (168)
T KOG3225|consen  121 SDWYNGAIAGCVTGGSLGYRA-GPKAAAIGCAGFAAFSAAIDK  162 (168)
T ss_pred             hchhcceeeeeeeccchhhcc-cchhhhhchhHHHHHHHHHHH
Confidence            899999999999999998655 476677777778888877765

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.0017  Score=55.66  Aligned_cols=64  Identities=19%  Similarity=0.317  Sum_probs=54.0

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHH
Q 029467           57 SATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVV  123 (193)
Q Consensus        57 aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~v  123 (193)
                      +-..+-||++.++.|.=.--.....|+-  ||.+||+|+|.++|++|.. ++|+.-.+..+++|.++
T Consensus        57 ap~~ggsFAvwgglfSt~dC~Lv~~R~K--eDpwNsivsGa~TGg~La~-r~g~~a~~~sa~~~g~~  120 (183)
T KOG1652|consen   57 APQSGGSFAVWGGLFSTVDCALVAIRKK--EDPWNSIVSGAATGGLLAA-RGGPKAMLTSAITGGLL  120 (183)
T ss_pred             CcccccceeeeechhhHHHHHHHHHhcc--cchHHHHHHHhhccceeec-cccHHHHHHHHHHHHHH
Confidence            3457899999999998888777778887  9999999999999999974 56687777888888776

>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain

Probab=94.80  E-value=0.051  Score=42.68  Aligned_cols=51  Identities=29%  Similarity=0.363  Sum_probs=44.4

Q ss_pred             CCchhhhhhhhhhhhhhhhhcCC-CCCchhHHHHHHHHhhhHHHHHhhhchh
Q 029467           87 DDLVNSAIAGFGSGALLGRLQGG-QRGALRYSVIFAVVGTTVDYATLRLAPI  137 (193)
Q Consensus        87 dd~inSavaG~~SGa~lGrlqGG-~~~a~~yav~fA~vGtg~~~a~~k~~~~  137 (193)
                      .+....++.|.+.|+++|-+-|+ ..+++..+.+.+++|....+...+.+.+
T Consensus        50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~G~~~g~~~~~~~~~  101 (118)
T PF13436_consen   50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAVGAAAGAARGRYQQY  101 (118)
T ss_pred             hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            56778888999999999999999 8999999999999999988887776543

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=0.08  Score=46.24  Aligned_cols=67  Identities=28%  Similarity=0.343  Sum_probs=51.9

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHHHHh
Q 029467           59 TYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDYATL  132 (193)
Q Consensus        59 ~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~a~~  132 (193)
                      ..+=+.=+++=.|.+....++.+|.-  ||..||++||+.+|+++=.=+|     +|.+.+-++||.+..-++-
T Consensus       127 ~~gN~lG~laL~YsaiesgI~~~R~~--dd~lnsv~AGalTGalyrs~~G-----lr~~av~ga~g~~aa~aw~  193 (206)
T KOG3324|consen  127 FWGNTLGSLALMYSAIESGIEATRGK--DDDLNSVAAGALTGALYRSTRG-----LRAAAVAGAVGGTAAAAWT  193 (206)
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhcc--ccchhhhhhhhhhhhhhhcCCC-----chHHHHHHHHHHHHHHHHH
Confidence            34556667888899999999999998  8999999999999999865544     4666666666666555554

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=90.31  E-value=0.16  Score=43.92  Aligned_cols=74  Identities=22%  Similarity=0.251  Sum_probs=58.6

Q ss_pred             ccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhH
Q 029467           51 HGLANISATYATNLSIVTACYCGAREFVRVSRKTGPDDLVNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTV  127 (193)
Q Consensus        51 ~~~~~~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~  127 (193)
                      -++..-+-..+-|+-+++..|-+-..+....|+-  .|+-|++.+|+++|+.+.+-.|.+.-. -.+.+|++.-.+.
T Consensus       110 ~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k--~d~~~~iaaG~~TGa~~~~~~g~qa~~-~~~a~~aa~s~~~  183 (191)
T COG5596         110 NNAGKRGFFTGKNLGVLGLIYAGINSIITALRAK--HDIANAIAAGAFTGAALASSAGPQAMP-MGGAGFAAFSAGI  183 (191)
T ss_pred             ccccccccccccccceeeeecccchhhhhhhhhc--cccchhhhhhhhhhHHHHhhccccccc-cCccchhhhhhhH
Confidence            3444556678899999999999999999999987  899999999999999999999966443 3445566554443

>PF13488 Gly-zipper_Omp: Glycine zipper

Probab=82.71  E-value=2.2  Score=28.89  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=24.6

Q ss_pred             hhhhhhhhhhhhhhcCCC-CCchhHHHHHHHHhhhHHHH
Q 029467           93 AIAGFGSGALLGRLQGGQ-RGALRYSVIFAVVGTTVDYA  130 (193)
Q Consensus        93 avaG~~SGa~lGrlqGG~-~~a~~yav~fA~vGtg~~~a  130 (193)
                      ++-|.+.|+++|.+.+++ .+++..+++.+++|..+.+-
T Consensus         3 a~iGA~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~ig~~   41 (46)
T PF13488_consen    3 AAIGAAAGAAIGAATGGPGKGAAIGAAVGAAVGAAIGNY   41 (46)
T ss_pred             HHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHH
Confidence            456778888888888864 55555555555555554443

>TIGR03789 pdsO proteobacterial sortase system OmpA family protein

Probab=82.49  E-value=0.69  Score=40.69  Aligned_cols=37  Identities=41%  Similarity=0.649  Sum_probs=27.8

Q ss_pred             hhhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhh
Q 029467           90 VNSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTT  126 (193)
Q Consensus        90 inSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg  126 (193)
                      .+.+..|+.+|+++|-+-|||.|++-++++.+++|..
T Consensus        40 ~~~~~~g~~~ga~~g~~~gg~~G~~~G~~~G~~~g~~   76 (239)
T TIGR03789        40 DQEALIGLGSGALLGALVGGPVGAIIGGITGGLIGQA   76 (239)
T ss_pred             ccchhhhHHHHHHHhhhhccHHHHHHHHHHHHHhhhh
Confidence            4445558889999999999997777777777766654

A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.

>COG3918 Predicted membrane protein [Function unknown]

Probab=81.10  E-value=2.1  Score=35.73  Aligned_cols=74  Identities=26%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             hhhhhhhhhhhhhhhhhhHHHHHHHHhhcCCCCch-----hhhhhhhhhhhhhhhhcCCCCCchhHHHHHHHHhhhHHH
Q 029467           56 ISATYATNLSIVTACYCGAREFVRVSRKTGPDDLV-----NSAIAGFGSGALLGRLQGGQRGALRYSVIFAVVGTTVDY  129 (193)
Q Consensus        56 ~aa~~a~N~~Iv~scf~garE~~r~~R~t~pdd~i-----nSavaG~~SGa~lGrlqGG~~~a~~yav~fA~vGtg~~~  129 (193)
                      ++.-++.-|+.+--+.....|++.|-|-++|..-+     .-++=|.++|+++|---|=+-+.+-.+++.||.||=+-|
T Consensus        39 waSfMgs~waavIftvLAv~ELvtDqlPsTPsRkVp~qFgaRiimGAf~GAvIGatgg~~~gGLiaGvIGAViGT~GGa  117 (153)
T COG3918          39 WASFMGSFWAAVIFTVLAVAELVTDQLPSTPSRKVPPQFGARIIMGAFAGAVIGATGGYRWGGLIAGVIGAVIGTMGGA  117 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCChhHhhhhhhhhhccccccccCCcEEehhhHhHHHHHHhccccH
Confidence            34444555566655667778999999998885433     456779999999998888888889999999999985544

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00