Citrus Sinensis ID: 029480

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MNDTSSRNGKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKRKPID
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHccccccEEEEEccccccccccccccccccccEEEEHHHHHHHHHHcccEEEcccccccHHHHHHHHHcccEEEcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHcccccEEEEEEEcccccccccccccccccccEEccHHHHHHHHHHcccEEEcccHHccHHHHHHHccccccccHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHcccccc
Coil and Loop (DISEMBL)
mndtssrngkyfdideilieeelvpvvfhksangvkvdpsaekdcvdegakvelpfwLSQELYLRQAVsinvpacfnqkTRREIQADAanvdlrsrcpyfyefgckiapivgdrTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKwriggpriqrasvlgrkrkpid
Flexible Loop (DISEMBL)
mndtssrngkyfdideiLIEEELVPVVFHKsangvkvdpsaeKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGckiapivgdRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAafkkwriggpriqrasvlgrkrkpid
Low Complexity Region (SEG)
MNDTSSRNGKYFdideilieeelVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKRKPID
Disordered region (IsUnstruct)
*********KYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPR***************
Disordered Region (DISOPRED)
**********YFDIDEILIEEELVPVVFHKSANGVK**************KVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAA**VASKFLAVLTKEETNLYEAAQSSMAAF*KW**************RKR****
Disordered Region (DISEMBL)
********GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASV*********
Disordered Region (DISPRO)
********GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDTSSRNGKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKRKPID
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q0UPV4	179	DNA replication complex G	N/A	no	0.838	0.899	0.289	4e-17
Q4WQ54	178	DNA replication complex G	yes	no	0.838	0.904	0.248	2e-14
Q5RDV0	216	DNA replication complex G	yes	no	0.822	0.731	0.280	2e-14
Q9BRX5	216	DNA replication complex G	yes	no	0.822	0.731	0.280	2e-14
Q9CY94	216	DNA replication complex G	yes	no	0.843	0.75	0.289	3e-14
Q08E12	216	DNA replication complex G	yes	no	0.822	0.731	0.280	5e-14
Q9UTC3	166	DNA replication complex G	yes	no	0.822	0.951	0.286	9e-14
Q54EH6	265	Probable DNA replication	yes	no	0.833	0.603	0.259	2e-13
Q6BYZ4	176	DNA replication complex G	yes	no	0.848	0.926	0.239	7e-11
P0CQ32	189	DNA replication complex G	yes	no	0.838	0.851	0.271	9e-11

>sp|Q0UPV4|PSF3_PHANO DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=PSF3 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 8/169 (4%)

Query: 11  YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQA--- 67
           Y+ +D IL + + VP  F  +  G+          + +G+KVELP WL + L L Q+   
Sbjct: 4   YYSVDAILTDAQKVPCTFELTVPGLGFLEGNMSGDMKQGSKVELPLWLGEMLALSQSLNT 63

Query: 68  ---VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTF 124
              V+++ P+  + +    ++AD   VDLR+  P+FY+ G +I  +  +  + ++L  TF
Sbjct: 64  SSLVTLDPPSALSPRVLNALKADPRTVDLRALAPHFYDLGARILELFEEEKMIEVLSDTF 123

Query: 125 QMRYKDILTKAHT--AAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
           + R   I  +AH    A    + F+  L + E  L+ AA  S  A + W
Sbjct: 124 KARAAVIADQAHNPRGALGEGADFMRGLDENERQLFRAAHDSAKAARTW 172

The GINS complex plays an essential role in the initiation of DNA replication.
Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614)

>sp|Q4WQ54|PSF3_ASPFU DNA replication complex GINS protein psf3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=psf3 PE=3 SV=2

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 11  YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYL------ 64
           Y+D+D IL + + +P  F     G+ +      + +  G +++LP WL   L +      
Sbjct: 3   YYDVDSILTDSQKLPCTFELEVPGLGILEGNPGEDIKAGTRIDLPLWLGVMLSIGARLGT 62

Query: 65  RQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTF 124
            + V++++P+  + +    ++AD   VDLRS  P+FY    ++  +  +  +  +L++TF
Sbjct: 63  SRLVTLDLPSALSDRVVNALKADPRTVDLRSLAPHFYSLSERVLDLFEEEEMVDVLINTF 122

Query: 125 QMRYKDILTKAHT--AAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
           + R  +I   AH    A    + FL  L + E  L+  A  S    + W
Sbjct: 123 KKRAAEIADHAHNPKGALGEGADFLRGLDETERQLFRVAHDSARETRIW 171

The GINS complex plays an essential role in the initiation of DNA replication.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5RDV0|PSF3_PONAB DNA replication complex GINS protein PSF3 OS=Pongo abelii GN=GINS3 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 24/182 (13%)

Query: 10  KYFDIDEILIEEELVPV-----------VFHKSANGVKVDPSAEKDCVDEGAKVELPFWL 58
            +  +D+IL+  E +PV            F + + G + D     + V +G+K+ELP WL
Sbjct: 18  NFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETD-----NAVPQGSKLELPLWL 72

Query: 59  SQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKI----APIVG 112
           ++ L+   R+ +S+ +P  + +  R    AD   VDL    P+FY FG ++    +P   
Sbjct: 73  AKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENA 132

Query: 113 DRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWR 172
           D  I + LL TF  R++ I+  +  A     S  +A L + E  L++  Q+ +  F+ W 
Sbjct: 133 D--ISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQIGQNGLNDFQCWE 190

Query: 173 IG 174
            G
Sbjct: 191 KG 192

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.

Pongo abelii (taxid: 9601)

>sp|Q9BRX5|PSF3_HUMAN DNA replication complex GINS protein PSF3 OS=Homo sapiens GN=GINS3 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 24/182 (13%)

Query: 10  KYFDIDEILIEEELVPV-----------VFHKSANGVKVDPSAEKDCVDEGAKVELPFWL 58
            +  +D+IL+  E +PV            F + + G + D     + V +G+K+ELP WL
Sbjct: 18  NFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETD-----NAVPQGSKLELPLWL 72

Query: 59  SQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKI----APIVG 112
           ++ L+   R+ +S+ +P  + +  R    AD   VDL    P+FY FG ++    +P   
Sbjct: 73  AKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENA 132

Query: 113 DRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWR 172
           D  I + LL TF  R++ I+  +  A     S  +A L + E  L++  Q  +  F+ W 
Sbjct: 133 D--ISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWE 190

Query: 173 IG 174
            G
Sbjct: 191 KG 192

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.

Homo sapiens (taxid: 9606)

>sp|Q9CY94|PSF3_MOUSE DNA replication complex GINS protein PSF3 OS=Mus musculus GN=Gins3 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 14/176 (7%)

Query: 11  YFDIDEILIEEELVPVVFHK-----SANGVKVDPSAEKDC-VDEGAKVELPFWLSQELY- 63
           +  +D+IL+ +E +PV          A  ++    +E D  + +G K+ELP WL++ L+ 
Sbjct: 19  FLSLDDILMSQEKLPVRVETPMPRLGAFFLERGAGSEPDHPLPQGTKLELPLWLAKGLFD 78

Query: 64  -LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKI----APIVGDRTIGK 118
             R+ +S+ +P  + +  R    ADA  VDL    P+FY FG ++    +P   D  I +
Sbjct: 79  HKRRILSVELPKMYQEGWRTVFSADANVVDLHKMGPHFYGFGSQLLHFDSPENAD--ISQ 136

Query: 119 MLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIG 174
            LL TF  R++ I+  +  +     S  +A L + E  L++  Q S+  F+ W  G
Sbjct: 137 SLLKTFIGRFRRIMDSSQNSYNEDTSALVARLDETERGLFQIGQRSLNDFQSWEKG 192

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.

Mus musculus (taxid: 10090)

>sp|Q08E12|PSF3_BOVIN DNA replication complex GINS protein PSF3 OS=Bos taurus GN=GINS3 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 24/182 (13%)

Query: 10  KYFDIDEILIEEELVPV-----------VFHKSANGVKVDPSAEKDCVDEGAKVELPFWL 58
            +  +D+IL+  E + V            F   + G + D     + + EG K+ELP WL
Sbjct: 18  NFLSLDDILMSHEKLSVRTEIPMPRLGAFFLDRSGGAETD-----NAIPEGTKLELPLWL 72

Query: 59  SQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKI----APIVG 112
           ++ L+   R+ +S+ +P  + +  R    ADA  VDL    P+FY FG ++    +P   
Sbjct: 73  AKGLFDNKRRILSVELPKIYQEGWRTVFSADANVVDLHKMGPHFYGFGSQLLHFDSPENA 132

Query: 113 DRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWR 172
           D  I   LL TF  R++ I+  +  A     S  +A L + E  L++  Q  +  F+ W 
Sbjct: 133 D--ISHSLLQTFVGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWE 190

Query: 173 IG 174
            G
Sbjct: 191 KG 192

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|Q9UTC3|PSF3_SCHPO DNA replication complex GINS protein psf3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psf3 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 11  YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSI 70
           Y+DID IL E + VP     S  G+      E   V  G+KVELPFWL++ L +   VSI
Sbjct: 3   YYDIDSILSENQKVPCTSTVSIPGL----GHEGRMVPTGSKVELPFWLAEVLAINSFVSI 58

Query: 71  NVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKD 130
           ++PA F+   R  ++A+  +V +R    ++Y F  K+  ++ D ++ ++ L+T + R   
Sbjct: 59  HMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLHLISDDSLVQISLNTLRSRAML 118

Query: 131 ILTKAHTAAYAVA--SKFLAVLTKEETNLYEAAQSSMAAFKKWR 172
           I   +     A+   S+F+  L   E ++   + ++  +   W+
Sbjct: 119 IADASLNPQGALQQNSQFIEGLDDFEKHILRVSHNAHRSLINWQ 162

The GINS complex plays an essential role in the initiation of DNA replication.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54EH6|PSF3_DICDI Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium discoideum GN=gins3 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 11  YFDIDEILIEEELVPV-VFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVS 69
           YFDI++IL EE+ +    F+ + N  +++  +    + +G+KV+LP+W++  L     VS
Sbjct: 3   YFDINDILAEEQKITCNFFYDAYNLGQLEEGSRDPDMKKGSKVDLPYWMALALAKSNFVS 62

Query: 70  INVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYK 129
           + +P  +  + + ++ AD   + +R   PY+ + G +++   GDR +  +L   F+ R+ 
Sbjct: 63  VIMPPEYQDEYKNKLIADPNVISMR-LFPYYDKIGVQLSDFFGDRKLKLLLFRVFRERFL 121

Query: 130 DILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
           +I +++        SK L  LT +E  ++     S   + KW
Sbjct: 122 NIYSQSINLKETDISKILGNLTYQEREVFSNGYKSSNDYDKW 163

The GINS complex plays an essential role in the initiation of DNA replication.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6BYZ4|PSF3_DEBHA DNA replication complex GINS protein PSF3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PSF3 PE=3 SV=2

 Score = 67.0 bits (162), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 8/171 (4%)

Query: 9   GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYL---- 64
             YFD+D+IL + E +P  F+ +  G+          + +  K+ELP WL++ L +    
Sbjct: 3   SNYFDLDDILSDGEKIPCRFNITVPGLGYLEGNPGKSIAKDTKIELPLWLAEILAICELS 62

Query: 65  ----RQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKML 120
               +  + ++ P   N K    I+ +A N+DL S    +Y+   K A +  D  + +++
Sbjct: 63  EDSQQSFIDLSQPDFINYKVINAIKTNAVNIDLHSILTNYYKLSEKWASMFNDVELIEVV 122

Query: 121 LSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
           +   + R  +I   A  A+  + + F+  L + E  L++    S    +KW
Sbjct: 123 MQMLKERSFEINNYASNASKQINNNFIFSLDEFEKKLFKVTSDSNKQMRKW 173

The GINS complex plays an essential role in the initiation of DNA replication.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|P0CQ32|PSF3_CRYNJ DNA replication complex GINS protein PSF3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PSF3 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 11  YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSI 70
           YF I  IL +   +   F   A G+     + ++ + EG KVELPFWL+Q L + Q  + 
Sbjct: 5   YFSITSILADNHKMSCTFALDAEGLGYLEGSTENDIHEGTKVELPFWLAQTLSVNQFTTF 64

Query: 71  NVPACFNQKTRREIQADAANVDLRSRC---PYFYEFGCKIAPIVGDR---TIGKMLLSTF 124
            +P  ++ + +  + A   +V L +      ++Y +G K+A ++ D     I  MLL  F
Sbjct: 65  TLPLPYSSRVQSALVASPVSVKLSNLVGGNGWWYRWGKKLADMLEDEQATNIRNMLLRAF 124

Query: 125 QMRYKDI--LTKAHTAA--------YAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
             R   +  L   H +A         + A  F   +  +E  L+   Q S   FK W
Sbjct: 125 TGRLPTLQDLAAHHASADHTMPELSTSKAEMFRDGMEGDERELFSIGQDSGRLFKAW 181

The GINS complex plays an essential role in the initiation of DNA replication.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
145332863	185	GINS complex protein [Arabidopsis thalia	0.942	0.978	0.723	3e-77
297820304	185	hypothetical protein ARALYDRAFT_485976 [	0.958	0.994	0.711	4e-77
116830757	186	unknown [Arabidopsis thaliana]	0.942	0.973	0.723	4e-77
7076792	194	putative protein [Arabidopsis thaliana]	0.942	0.932	0.694	1e-75
225448423	186	PREDICTED: probable DNA replication comp	0.947	0.978	0.726	2e-75
8778281	269	F14D16.22 [Arabidopsis thaliana]	0.942	0.672	0.673	7e-75
357461211	186	DNA replication complex GINS protein PSF	0.958	0.989	0.708	2e-74
224098590	184	predicted protein [Populus trichocarpa]	0.942	0.983	0.708	4e-74
449441304	189	PREDICTED: DNA replication complex GINS	0.973	0.989	0.684	4e-74
388493646	186	unknown [Medicago truncatula]	0.958	0.989	0.702	8e-74

>gi|145332863|ref|NP_001078297.1| GINS complex protein [Arabidopsis thaliana] gi|186478638|ref|NP_173342.2| GINS complex protein [Arabidopsis thaliana] gi|334182681|ref|NP_001185031.1| GINS complex protein [Arabidopsis thaliana] gi|38566626|gb|AAR24203.1| At1g19080 [Arabidopsis thaliana] gi|40824111|gb|AAR92348.1| At1g19080 [Arabidopsis thaliana] gi|98961791|gb|ABF59225.1| unknown protein [Arabidopsis thaliana] gi|332191676|gb|AEE29797.1| GINS complex protein [Arabidopsis thaliana] gi|332191677|gb|AEE29798.1| GINS complex protein [Arabidopsis thaliana] gi|332645871|gb|AEE79392.1| GINS complex protein [Arabidopsis thaliana]

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 157/181 (86%)

Query: 9   GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAV 68
            KYFDID+ILIEEE VPV+FHK+ANGV +DPSAE +C ++G+KVELPFWL+ EL+LRQAV
Sbjct: 2   AKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQAV 61

Query: 69  SINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRY 128
           +IN+P CF+QKTR E+QADAA VDLRSRCPYFYEFGCKI P+V DRT+G +L + F++RY
Sbjct: 62  TINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIRY 121

Query: 129 KDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKR 188
           K+ LTK +TAA+  ASK+L+ LTKEETNLYEAA  SM AFKKWR GGPR QRAS+LGRKR
Sbjct: 122 KEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRKR 181

Query: 189 K 189
           K
Sbjct: 182 K 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820304|ref|XP_002878035.1| hypothetical protein ARALYDRAFT_485976 [Arabidopsis lyrata subsp. lyrata] gi|297323873|gb|EFH54294.1| hypothetical protein ARALYDRAFT_485976 [Arabidopsis lyrata subsp. lyrata]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 131/184 (71%), Positives = 158/184 (85%)

Query: 9   GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAV 68
            KYFDID+ILIEEE VPV+FHK+ANGV +DPSAE +C ++G+KVELPFWL+ EL+LRQAV
Sbjct: 2   AKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQAV 61

Query: 69  SINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRY 128
           +IN+P CF+QKTR E+QADAA VDLRSRCPYFYEFGCK+ P+V DRT+G +L + F++RY
Sbjct: 62  TINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKLEPLVTDRTLGILLSTAFKIRY 121

Query: 129 KDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKR 188
           K+ LTK +TAA+  ASK+L+ LTKEETNLYEAA  SM AFKKWR GGPR QRAS+LGRKR
Sbjct: 122 KEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRKR 181

Query: 189 KPID 192
           K  D
Sbjct: 182 KDSD 185

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830757|gb|ABK28336.1| unknown [Arabidopsis thaliana]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 157/181 (86%)

Query: 9   GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAV 68
            KYFDID+ILIEEE VPV+FHK+ANGV +DPSAE +C ++G+KVELPFWL+ EL+LRQAV
Sbjct: 2   AKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQAV 61

Query: 69  SINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRY 128
           +IN+P CF+QKTR E+QADAA VDLRSRCPYFYEFGCKI P+V DRT+G +L + F++RY
Sbjct: 62  TINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIRY 121

Query: 129 KDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKR 188
           K+ LTK +TAA+  ASK+L+ LTKEETNLYEAA  SM AFKKWR GGPR QRAS+LGRKR
Sbjct: 122 KEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRKR 181

Query: 189 K 189
           K
Sbjct: 182 K 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7076792|emb|CAB75907.1| putative protein [Arabidopsis thaliana]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 132/190 (69%), Positives = 158/190 (83%), Gaps = 9/190 (4%)

Query: 9   GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCV---------DEGAKVELPFWLS 59
            KYFDID+ILIEEE VPV+FHK+ANGV +DPSAE +CV         ++G+KVELPFWL+
Sbjct: 2   AKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCVSILLPSAKAEQGSKVELPFWLA 61

Query: 60  QELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKM 119
            EL+LRQAV+IN+P CF+QKTR E+QADAA VDLRSRCPYFYEFGCKI P+V DRT+G +
Sbjct: 62  HELHLRQAVTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGIL 121

Query: 120 LLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQ 179
           L + F++RYK+ LTK +TAA+  ASK+L+ LTKEETNLYEAA  SM AFKKWR GGPR Q
Sbjct: 122 LSTAFKIRYKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQ 181

Query: 180 RASVLGRKRK 189
           RAS+LGRKRK
Sbjct: 182 RASILGRKRK 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448423|ref|XP_002271201.1| PREDICTED: probable DNA replication complex GINS protein PSF3 [Vitis vinifera] gi|147828134|emb|CAN64086.1| hypothetical protein VITISV_006937 [Vitis vinifera] gi|297736610|emb|CBI25481.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/183 (72%), Positives = 155/183 (84%), Gaps = 1/183 (0%)

Query: 11  YFDIDEILIEEELVPVVFHKSANGVKV-DPSAEKDCVDEGAKVELPFWLSQELYLRQAVS 69
           Y++IDEI++EEELV  VF K+ANGV + DPSAE + V++G+KVELPFWL+ EL  RQAV+
Sbjct: 4   YYNIDEIIVEEELVSAVFQKAANGVGILDPSAETNSVEQGSKVELPFWLAHELLQRQAVT 63

Query: 70  INVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYK 129
           I+VPACFNQKTR+EIQADA  VDLRSRCPYFYE GCK+AP+VGDRTIG +LL  F  RYK
Sbjct: 64  IHVPACFNQKTRKEIQADAPCVDLRSRCPYFYELGCKVAPLVGDRTIGSLLLQAFLSRYK 123

Query: 130 DILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKRK 189
           ++L+KAHTAA     K L +LTKEETNLYE AQSSMAAFKKWR+GGPR QRASVLGRKRK
Sbjct: 124 EVLSKAHTAASTPVPKVLTLLTKEETNLYETAQSSMAAFKKWRMGGPRFQRASVLGRKRK 183

Query: 190 PID 192
           P D
Sbjct: 184 PTD 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778281|gb|AAF79290.1|AC068602_13 F14D16.22 [Arabidopsis thaliana]

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 132/196 (67%), Positives = 158/196 (80%), Gaps = 15/196 (7%)

Query: 9   GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCV---------------DEGAKVE 53
            KYFDID+ILIEEE VPV+FHK+ANGV +DPSAE +CV               ++G+KVE
Sbjct: 71  AKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCVSLLIPSAKVYFLVQAEQGSKVE 130

Query: 54  LPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGD 113
           LPFWL+ EL+LRQAV+IN+P CF+QKTR E+QADAA VDLRSRCPYFYEFGCKI P+V D
Sbjct: 131 LPFWLAHELHLRQAVTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTD 190

Query: 114 RTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRI 173
           RT+G +L + F++RYK+ LTK +TAA+  ASK+L+ LTKEETNLYEAA  SM AFKKWR 
Sbjct: 191 RTLGILLSTAFKIRYKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRT 250

Query: 174 GGPRIQRASVLGRKRK 189
           GGPR QRAS+LGRKRK
Sbjct: 251 GGPRFQRASILGRKRK 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461211|ref|XP_003600887.1| DNA replication complex GINS protein PSF3 [Medicago truncatula] gi|355489935|gb|AES71138.1| DNA replication complex GINS protein PSF3 [Medicago truncatula]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/185 (70%), Positives = 156/185 (84%), Gaps = 1/185 (0%)

Query: 9   GKYFDIDEILIEEELVPVVFHKSANGVKV-DPSAEKDCVDEGAKVELPFWLSQELYLRQA 67
             Y+D+D+IL+EEE+V V+F K+A+GV + DPS+E D ++ G+KVELPFWL+ EL LRQA
Sbjct: 2   ANYYDMDDILVEEEIVSVIFQKAASGVGIIDPSSETDFIEAGSKVELPFWLAHELQLRQA 61

Query: 68  VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMR 127
           VS+NVP CFNQKTR EIQAD A VDLRSRCPYFYEFGCKIAPIVGDRTIG +LLS F+ R
Sbjct: 62  VSVNVPPCFNQKTRLEIQADCACVDLRSRCPYFYEFGCKIAPIVGDRTIGFLLLSAFKNR 121

Query: 128 YKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRK 187
           YK++LTKAHTAA A  SKF  +LT EE NLYE AQS+MA+FKKWR+GGPR Q AS+LGRK
Sbjct: 122 YKEVLTKAHTAAIAAGSKFWTILTNEEINLYETAQSAMASFKKWRMGGPRFQIASILGRK 181

Query: 188 RKPID 192
           RKP +
Sbjct: 182 RKPTE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098590|ref|XP_002311220.1| predicted protein [Populus trichocarpa] gi|222851040|gb|EEE88587.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 129/182 (70%), Positives = 157/182 (86%), Gaps = 1/182 (0%)

Query: 11  YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSI 70
           Y+DID IL+EEE VPVVF K+ NGVK+D S EK  V++G+K +LPFWL+ EL++RQAVSI
Sbjct: 4   YYDIDSILVEEEFVPVVFQKAINGVKIDESTEKGYVEQGSKTQLPFWLAHELHMRQAVSI 63

Query: 71  NVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKD 130
            VPACFNQKTR EIQADAA VDLRSRCPYFYEFGCK+AP+  D++IG +L   F++RYK+
Sbjct: 64  GVPACFNQKTRLEIQADAACVDLRSRCPYFYEFGCKLAPLC-DKSIGLLLAYAFRIRYKE 122

Query: 131 ILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKRKP 190
           +L KAHT A+A AS+FL +LTKEET +YEAAQSSMAAFKKWR+GGPR+QRAS+LGRKRKP
Sbjct: 123 VLHKAHTTAFAAASRFLMLLTKEETYMYEAAQSSMAAFKKWRMGGPRLQRASILGRKRKP 182

Query: 191 ID 192
            +
Sbjct: 183 AE 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441304|ref|XP_004138422.1| PREDICTED: DNA replication complex GINS protein PSF3-like [Cucumis sativus] gi|449519657|ref|XP_004166851.1| PREDICTED: DNA replication complex GINS protein PSF3-like [Cucumis sativus]

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 155/187 (82%)

Query: 6   SRNGKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLR 65
           S    Y+DID+IL EEELV VVF K+ NGV +DPS+E D V+ G+KVELPFWL+QEL+LR
Sbjct: 3   SEMTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLR 62

Query: 66  QAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQ 125
           Q   + +P+CFNQ+TR EIQADAA VDLRSRC +FYEFGCKIAP+VGDRTIG  LLST +
Sbjct: 63  QVAVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTLK 122

Query: 126 MRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLG 185
            RYK++LTKAH+A +A +SK+LA+L+KEET +YEAAQSSM AFKKWR+GGPR QRAS L 
Sbjct: 123 SRYKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLS 182

Query: 186 RKRKPID 192
           RKRK  +
Sbjct: 183 RKRKSTE 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493646|gb|AFK34889.1| unknown [Medicago truncatula]

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 130/185 (70%), Positives = 155/185 (83%), Gaps = 1/185 (0%)

Query: 9   GKYFDIDEILIEEELVPVVFHKSANGVKV-DPSAEKDCVDEGAKVELPFWLSQELYLRQA 67
             Y+D+D+IL+EEE+V V+F K+A+GV + DPS+E D ++ G+KVELPFWL+ EL LRQA
Sbjct: 2   ANYYDMDDILVEEEIVSVIFQKAASGVGIIDPSSETDFIEAGSKVELPFWLAHELQLRQA 61

Query: 68  VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMR 127
           VS+NVP CFNQK R EIQAD A VDLRSRCPYFYEFGCKIAPIVGDRTIG +LLS F+ R
Sbjct: 62  VSVNVPPCFNQKARLEIQADCACVDLRSRCPYFYEFGCKIAPIVGDRTIGFLLLSAFKNR 121

Query: 128 YKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRK 187
           YK++LTKAHTAA A  SKF  +LT EE NLYE AQS+MA+FKKWR+GGPR Q AS+LGRK
Sbjct: 122 YKEVLTKAHTAAIAAGSKFWTILTNEEINLYETAQSAMASFKKWRMGGPRFQIASILGRK 181

Query: 188 RKPID 192
           RKP +
Sbjct: 182 RKPTE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2011311	185	TTN10 "AT1G19080" [Arabidopsis	0.937	0.972	0.677	1.1e-64
TAIR|locus:2099976	185	AT3G55490 [Arabidopsis thalian	0.937	0.972	0.677	1.1e-64
UNIPROTKB|Q7ZT01	210	gins3 "Psf3" [Xenopus laevis (	0.796	0.728	0.306	7.7e-16
UNIPROTKB|E2R7G0	216	GINS3 "Uncharacterized protein	0.791	0.703	0.312	3.8e-14
UNIPROTKB|E1C7B9	214	GINS3 "Uncharacterized protein	0.682	0.612	0.303	1e-13
UNIPROTKB|Q08E12	216	GINS3 "DNA replication complex	0.697	0.620	0.316	3.4e-13
UNIPROTKB|F1RFT0	216	GINS3 "Uncharacterized protein	0.776	0.689	0.305	3.4e-13
MGI|MGI:1926083	216	Gins3 "GINS complex subunit 3	0.739	0.657	0.302	5.6e-13
UNIPROTKB|Q9BRX5	216	GINS3 "DNA replication complex	0.791	0.703	0.3	7.1e-13
RGD|1308153	216	Gins3 "GINS complex subunit 3	0.776	0.689	0.299	7.1e-13

TAIR|locus:2011311 TTN10 "AT1G19080" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 122/180 (67%), Positives = 147/180 (81%)

Query:    10 KYFXXXXXXXXXXXVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVS 69
             KYF           VPV+FHK+ANGV +DPSAE +C ++G+KVELPFWL+ EL+LRQAV+
Sbjct:     3 KYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQAVT 62

Query:    70 INVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYK 129
             IN+P CF+QKTR E+QADAA VDLRSRCPYFYEFGCKI P+V DRT+G +L + F++RYK
Sbjct:    63 INLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIRYK 122

Query:   130 DILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKRK 189
             + LTK +TAA+  ASK+L+ LTKEETNLYEAA  SM AFKKWR GGPR QRAS+LGRKRK
Sbjct:   123 EALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRKRK 182

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0000811 "GINS complex" evidence=ISS

GO:0006261 "DNA-dependent DNA replication" evidence=ISS

TAIR|locus:2099976 AT3G55490 [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 122/180 (67%), Positives = 147/180 (81%)

Query:    10 KYFXXXXXXXXXXXVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVS 69
             KYF           VPV+FHK+ANGV +DPSAE +C ++G+KVELPFWL+ EL+LRQAV+
Sbjct:     3 KYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQAVT 62

Query:    70 INVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYK 129
             IN+P CF+QKTR E+QADAA VDLRSRCPYFYEFGCKI P+V DRT+G +L + F++RYK
Sbjct:    63 INLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIRYK 122

Query:   130 DILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQRASVLGRKRK 189
             + LTK +TAA+  ASK+L+ LTKEETNLYEAA  SM AFKKWR GGPR QRAS+LGRKRK
Sbjct:   123 EALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRKRK 182

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|Q7ZT01 gins3 "Psf3" [Xenopus laevis (taxid:8355)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 49/160 (30%), Positives = 83/160 (51%)

Query:    37 VDPSAEKDCVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLR 94
             +D   + D + EG+K+ELP WL++ LY   R+ +S+ +P  + +  R    ADA  VDL 
Sbjct:    45 LDKGGDSDSIPEGSKMELPLWLAKGLYDNKRRVLSVELPKIYREGWRTVFSADANVVDLH 104

Query:    95 SRCPYFYEFGCKIAPIVGDRT--IGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTK 152
                P++Y FG ++          I K +L TF  R++ I+  +  A     S  +A L +
Sbjct:   105 KMGPHYYGFGSQLLNFDSPENPEIAKTILQTFVGRFRRIMDSSQNAYNEDTSGLVARLDE 164

Query:   153 EETNLYEAAQSSMAAFKKWRIG-GPRIQRASVLG--RKRK 189
              E +L+ A Q  + AF+ W  G   +I  ++++   +KRK
Sbjct:   165 LERSLFRAGQRGLNAFQSWERGKAAQITASNLVQNYKKRK 204

GO:0000811 "GINS complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IC

GO:0006260 "DNA replication" evidence=IMP

UNIPROTKB|E2R7G0 GINS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 50/160 (31%), Positives = 81/160 (50%)

Query:    41 AEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
             AE D  + +G+K+ELP WL++ L+   R+ +S+ +P  + Q  R    ADA  VDL    
Sbjct:    54 AETDHAIPQGSKLELPLWLAKGLFDNKRRIISVELPKIYQQGWRTVFSADANVVDLHKLG 113

Query:    98 PYFYEFGCKIAPIVGDRT--IGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEET 155
             P+FY FG ++          I + LL TF  R++ I+  +  A     S  +A L + E 
Sbjct:   114 PHFYGFGSQLLHFDSPENADISESLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMER 173

Query:   156 NLYEAAQSSMAAFKKWRIG-GPRIQRASVLG--RKRKPID 192
              L++  Q  +  F+ W  G   +I  +S++   +KRK  D
Sbjct:   174 GLFQTGQKGLNDFQCWEKGQASQITASSLVQNYKKRKLTD 213

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1C7B9 GINS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 41/135 (30%), Positives = 69/135 (51%)

Query:    44 DCVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFY 101
             D + EG+K+E+P WL++ L+   R+ +S+ +P  + +  R    ADA  VDL    PY+Y
Sbjct:    56 DSIPEGSKLEIPMWLAKGLHDSKRRLISVELPKIYKEAWRTVFSADANVVDLHKMGPYYY 115

Query:   102 EFGCKIAPIVGDRT--IGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYE 159
              FG ++          I + +L TF  R++ I+  +  A     S  +A L + E  L++
Sbjct:   116 GFGSQLLNFDNPENPEIAQCILQTFINRFRRIMDSSQNAYNEDTSSLVARLDELERALFQ 175

Query:   160 AAQSSMAAFKKWRIG 174
             A Q  +  F+ W  G
Sbjct:   176 AGQKGLNDFQCWEKG 190

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q08E12 GINS3 "DNA replication complex GINS protein PSF3" [Bos taurus (taxid:9913)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 44/139 (31%), Positives = 68/139 (48%)

Query:    41 AEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
             AE D  + EG K+ELP WL++ L+   R+ +S+ +P  + +  R    ADA  VDL    
Sbjct:    54 AETDNAIPEGTKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADANVVDLHKMG 113

Query:    98 PYFYEFGCKIAPIVGDRT--IGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEET 155
             P+FY FG ++          I   LL TF  R++ I+  +  A     S  +A L + E 
Sbjct:   114 PHFYGFGSQLLHFDSPENADISHSLLQTFVGRFRRIMDSSQNAYNEDTSALVARLDEMER 173

Query:   156 NLYEAAQSSMAAFKKWRIG 174
              L++  Q  +  F+ W  G
Sbjct:   174 GLFQTGQKGLNDFQCWEKG 192

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|F1RFT0 GINS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 48/157 (30%), Positives = 80/157 (50%)

Query:    41 AEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
             AE D  + +G+K+ELP WL++ L+   R+ +S+ +P  + +  R    ADA  VDL    
Sbjct:    54 AETDNTIPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFGADANVVDLHKMG 113

Query:    98 PYFYEFGCKIAPIVGDRT--IGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEET 155
             P+FY FG ++          I + LL TF  R++ I+  A  A     S  +A L + E 
Sbjct:   114 PHFYGFGSQLLHFDSPENADISQALLQTFIGRFRRIMDSAQNAYNEDTSALVARLDEMER 173

Query:   156 NLYEAAQSSMAAFKKWRIG-GPRIQRASVLG--RKRK 189
              L++  Q  +  F+ W  G   +I  ++++   +KRK
Sbjct:   174 GLFQTGQKGLNDFQCWEKGQASQITASNLVQNYKKRK 210

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1926083 Gins3 "GINS complex subunit 3 (Psf3 homolog)" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 45/149 (30%), Positives = 76/149 (51%)

Query:    48 EGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGC 105
             +G K+ELP WL++ L+   R+ +S+ +P  + +  R    ADA  VDL    P+FY FG 
Sbjct:    62 QGTKLELPLWLAKGLFDHKRRILSVELPKMYQEGWRTVFSADANVVDLHKMGPHFYGFGS 121

Query:   106 KIAPIVGDRT--IGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQS 163
             ++          I + LL TF  R++ I+  +  +     S  +A L + E  L++  Q 
Sbjct:   122 QLLHFDSPENADISQSLLKTFIGRFRRIMDSSQNSYNEDTSALVARLDETERGLFQIGQR 181

Query:   164 SMAAFKKWRIG-GPRIQRASVLG--RKRK 189
             S+  F+ W  G   +I  +S++   +KRK
Sbjct:   182 SLNDFQSWEKGQASQITASSLVQNYKKRK 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q9BRX5 GINS3 "DNA replication complex GINS protein PSF3" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 48/160 (30%), Positives = 80/160 (50%)

Query:    41 AEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
             AE D  V +G+K+ELP WL++ L+   R+ +S+ +P  + +  R    AD   VDL    
Sbjct:    54 AETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMG 113

Query:    98 PYFYEFGCKIAPIVGDRT--IGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEET 155
             P+FY FG ++          I + LL TF  R++ I+  +  A     S  +A L + E 
Sbjct:   114 PHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMER 173

Query:   156 NLYEAAQSSMAAFKKWRIG-GPRIQRASVLG--RKRKPID 192
              L++  Q  +  F+ W  G   +I  ++++   +KRK  D
Sbjct:   174 GLFQTGQKGLNDFQCWEKGQASQITASNLVQNYKKRKFTD 213

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1308153 Gins3 "GINS complex subunit 3 (Psf3 homolog)" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 47/157 (29%), Positives = 79/157 (50%)

Query:    41 AEKDC-VDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
             AE D  + +G K+ELP WL++ L+   R+ +S+ +P  + +  R    ADA  VDL    
Sbjct:    54 AEADHPLPQGTKLELPLWLAKGLFDNKRRILSVELPKMYQEGWRTVFSADANVVDLHKMG 113

Query:    98 PYFYEFGCKIAPIVGDRT--IGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEET 155
             P+FY FG ++          I + LL TF  R++ I+  +  +     S  +A L + E 
Sbjct:   114 PHFYGFGSQLLHFDSPENSDISQSLLQTFIGRFRRIMDSSQNSYNEDTSALVARLDETER 173

Query:   156 NLYEAAQSSMAAFKKWRIG-GPRIQRASVLG--RKRK 189
              L++  Q  +  F+ W  G   +I  +S++   +KRK
Sbjct:   174 GLFQIGQKGLNDFQSWEKGQASQITASSLVQNYKKRK 210

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G55490	unknown protein; CONTAINS InterPro DOMAIN/s- GINS complex, Psf3 component (InterPro-IPR010492); BEST Arabidopsis thaliana protein match is- TTN10 (TITAN 10) (TAIR-AT1G19080.1); Has 224 Blast hits to 224 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 76; Plants - 22; Viruses - 0; Other Eukaryotes - 21 (source- NCBI BLink). (185 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	RPB5C	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase; [...] (210 aa)							•		0.921
	NRPB5	NRPB5; DNA binding / DNA-directed RNA polymerase; Non-catalytic subunit common to DNA-dependent [...] (205 aa)							•		0.825
	RPB5D	RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D); DNA binding / DNA-directed RNA polymerase; [...] (218 aa)							•		0.821
	NRPE5	NRPE5; DNA binding / DNA-directed RNA polymerase; Non-catalytic subunit unique to Nuclear DNA-d [...] (222 aa)							•		0.790
	AT5G40600	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomem [...] (306 aa)							•		0.776
	emb1353	emb1353 (embryo defective 1353); embryo defective 1353 (emb1353); FUNCTIONS IN- molecular_funct [...] (388 aa)							•		0.776
	emb2739	emb2739 (embryo defective 2739); embryo defective 2739 (emb2739); FUNCTIONS IN- molecular_funct [...] (508 aa)							•		0.776
	MEE22	MEE22 (MATERNAL EFFECT EMBRYO ARREST 22); Encodes a novel protein of unknown function that is e [...] (1297 aa)							•		0.776
	emb2204	emb2204 (embryo defective 2204); embryo defective 2204 (emb2204); FUNCTIONS IN- molecular_funct [...] (329 aa)							•		0.776
	emb1745	emb1745 (embryo defective 1745); embryo defective 1745 (emb1745); FUNCTIONS IN- molecular_funct [...] (611 aa)							•		0.776

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
cd11713	109	cd11713, GINS_A_psf3, Alpha-helical domain of GINS	4e-35
COG5138	168	COG5138, COG5138, Uncharacterized conserved protei	2e-22
pfam05916	106	pfam05916, Sld5, GINS complex protein	8e-14

>gnl|CDD|212551 cd11713, GINS_A_psf3, Alpha-helical domain of GINS complex protein Psf3 (partner of Sld5 3)

 Score =  118 bits (299), Expect = 4e-35
 Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 68  VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIV-GDRTIGKMLLSTFQM 126
           VS+ +P  +++K R  ++AD  +VDL    PYFYE G K+  +   D  + ++LL TF+ 
Sbjct: 2   VSVELPKIYSEKVRNALKADPTSVDLHKLSPYFYELGLKLLSLFPEDEELAEVLLETFKE 61

Query: 127 RYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIG 174
           R+++I+  A  A+    S+FL  L + E  L+ A Q S+  FKKW  G
Sbjct: 62  RFREIMDHAQNASNEDNSEFLRKLDELERKLFRAGQESLKDFKKWLKG 109

Psf3 is a component of GINS, a tetrameric protein complex. Psf3 expression is up regulated in malignant colon cancer and it might be involved in cancer cell proliferation. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. Length = 109

>gnl|CDD|227467 COG5138, COG5138, Uncharacterized conserved protein [Function unknown]

 Score = 88.4 bits (219), Expect = 2e-22
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 11  YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSI 70
           Y+DID+IL+ E  +P  F     G+       +  + E  KVELP+WL+  L +   V  
Sbjct: 3   YYDIDDILLGESRIPCTFKHKIPGLGFLGPRGR-ILPENRKVELPYWLASFLAINSFVCE 61

Query: 71  NVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKD 130
             P  F++     I+A  + VDLRS CP+F+    K A ++ + ++   L      R  D
Sbjct: 62  LGPGFFSESVLNAIKAKPSTVDLRSICPHFFYLAEKYAMLLSEGSLVAGLPEFLYERAGD 121

Query: 131 ILTKAHTA--AYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
             + +      ++  S+F+  L   E ++   +      F  W
Sbjct: 122 YSSASLNLKGTFSENSQFVWRLDMVEKSIVVGSHRRFQRFCAW 164

Length = 168

>gnl|CDD|218810 pfam05916, Sld5, GINS complex protein

 Score = 64.1 bits (156), Expect = 8e-14
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 52  VELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAANVD----LRSRCPYFYEFGCKI 107
            ELP WL++EL  R  V I  P   + +    ++A+  NVD    L    PYFYE    +
Sbjct: 1   PELPLWLAEELVERVLVEIEAPDELSLEVLNALKAEPKNVDTKLQLSKLPPYFYELAELL 60

Query: 108 APIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVAS-KFLAVLTKEET 155
             ++ ++   ++L    ++R + I   A   A    S   L  L++EE 
Sbjct: 61  LELLRNK---RLLREYLRIRLRKIEKLAWHLAGGNESEDLLDNLSEEER 106

The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
KOG1106	177	consensus Uncharacterized conserved protein [Funct	100.0
COG5138	168	Uncharacterized conserved protein [Function unknow	100.0
PF05916	108	Sld5: GINS complex protein; InterPro: IPR021151 DN	99.79
KOG4071	187	consensus Uncharacterized conserved protein [Funct	99.24
PTZ00362	479	hypothetical protein; Provisional	99.16
COG5093	185	Uncharacterized conserved protein [Function unknow	97.99
COG1711	223	DNA replication initiation complex subunit, GINS f	95.44

>KOG1106 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.3e-48  Score=301.52  Aligned_cols=167  Identities=37%  Similarity=0.665  Sum_probs=157.8

Q ss_pred             CCCcccccchhhhccceeceEEEeccCcccc-CCCCcccccccCCcccchhhhhhhhhhhhheeccCCcccchhhHHHhh
Q 029480            7 RNGKYFDIDEILIEEELVPVVFHKSANGVKV-DPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQ   85 (192)
Q Consensus         7 ~~~~YydiddILa~~ekVpc~f~~~~~~lG~-d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~P~~~~~~~~~~L~   85 (192)
                      ..+.|||||||||++++|||+|++++|++|| ++-+  .++++|++||||+|||..|+.+++|+|.+|++|++.++++++
T Consensus        10 ~e~~~~~lddIla~~~ki~ct~e~~i~~lgfl~~~~--~~~~~g~kVelP~wl~~~L~~~~~~si~lP~~fs~~~rn~i~   87 (177)
T KOG1106|consen   10 EEENFLDLDDILASGEKIPCTFETKIPNLGFLQAPP--RELPAGRKVELPYWLAEELAINQFVSILLPDIFSEKVRNVIK   87 (177)
T ss_pred             hhhccccHHHHHhcCCcccceeeecCCCCCccCCCc--ccCCCCCcccchHHHHHHHhhccceeecCchHHHHHHHHHHh
Confidence            3567889999999999999999999999998 5322  579999999999999999999999999999999999999999


Q ss_pred             hccccccccccCcceeecCceecccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhHHHHHHHHH
Q 029480           86 ADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSM  165 (192)
Q Consensus        86 Adp~~V~L~~~~~~fY~~g~~l~~l~~d~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~lf~~g~~s~  165 (192)
                      |||+.||||+.|||||++|++|+.+..+..+..++.++|.+|+++|++.+.+....+++++..+||.+|+.||.+|+++.
T Consensus        88 Adp~~vdL~s~~phFY~fg~kl~~l~s~~~l~~~~se~l~~R~~~~l~~~~s~~~~~~s~~~~rLD~~E~~l~~~~~r~~  167 (177)
T KOG1106|consen   88 ADPNKVDLRSLCPHFYEFGMKLLPLDSGENLGIILSETLRSRVREILDSSLSATNTQTSKFVERLDEMERKLFEAGHRSL  167 (177)
T ss_pred             cCcceeeccccccHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997777889999999999999999999999


Q ss_pred             HHhhhhhhcC
Q 029480          166 AAFKKWRIGG  175 (192)
Q Consensus       166 ~~~~~W~~~~  175 (192)
                      .+|++|+.++
T Consensus       168 ~d~~~Wl~~~  177 (177)
T KOG1106|consen  168 NDFKCWLKGT  177 (177)
T ss_pred             HHHHHHHhcC
Confidence            9999999864

>COG5138 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1e-43  Score=268.07  Aligned_cols=164  Identities=26%  Similarity=0.413  Sum_probs=153.1

Q ss_pred             CcccccchhhhccceeceEEEeccCccccCCCCcccccccCCcccchhhhhhhhhhhhheeccCCcccchhhHHHhhhcc
Q 029480            9 GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADA   88 (192)
Q Consensus         9 ~~YydiddILa~~ekVpc~f~~~~~~lG~d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~P~~~~~~~~~~L~Adp   88 (192)
                      |+||||||||+++++|||+|.+++||+||-+.. ...+++|+|||||+|||..|+.+.+|.+..|.+|++.++|+++|+|
T Consensus         1 M~YYdiDdiL~~~s~ipctf~~~IpglG~l~~~-gr~~p~n~kvelP~wLa~~Lainsfv~~l~p~~fs~~v~naika~P   79 (168)
T COG5138           1 MEYYDIDDILLGESRIPCTFKHKIPGLGFLGPR-GRILPENRKVELPYWLASFLAINSFVCELGPGFFSESVLNAIKAKP   79 (168)
T ss_pred             CCccCHHHHhcCCCccceeeEeecCCcccCCCC-CcccCCCCeeechHHHHHHHHHhhhHHhcCcchHHHHHHHHHhcCC
Confidence            799999999999999999999999999983222 2589999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcceeecCceecccccchhHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHhhhhhhhhHHHHHHHHHH
Q 029480           89 ANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKDILTKAHTAAY--AVASKFLAVLTKEETNLYEAAQSSMA  166 (192)
Q Consensus        89 ~~V~L~~~~~~fY~~g~~l~~l~~d~~l~~~L~~~f~~R~~~I~~~a~~~~~--~~~~~~~~~Lt~~Er~lf~~g~~s~~  166 (192)
                      .+||||+.|||||.++.+++.++++.+|.+.+.+++.+|...+.+.+.|..+  ..++.|+.+||..||.|+...|++.+
T Consensus        80 ~tvdlrsI~~hff~lA~K~~mL~se~sLv~~~~e~l~~Ra~~~~~ASLn~~g~~s~nSqfv~~Ld~~Ek~i~~~Sh~~~~  159 (168)
T COG5138          80 STVDLRSICPHFFYLAEKYAMLLSEGSLVAGLPEFLYERAGDYSSASLNLKGTFSENSQFVWRLDMVEKSIVVGSHRRFQ  159 (168)
T ss_pred             ceeehhhcchHHHHHHHHHHHHhcCchHhhhhHHHHHHHHHhhhccccCcccccccccHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999999999999999999999997766643  35677999999999999999999999


Q ss_pred             Hhhhhhh
Q 029480          167 AFKKWRI  173 (192)
Q Consensus       167 ~~~~W~~  173 (192)
                      .+.+|+.
T Consensus       160 ~~~~w~~  166 (168)
T COG5138         160 RFCAWLV  166 (168)
T ss_pred             HHHHHHh
Confidence            9999985

>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template

Probab=99.79  E-value=4.2e-20  Score=134.33  Aligned_cols=102  Identities=34%  Similarity=0.568  Sum_probs=94.4

Q ss_pred             ccchhhhhhhhhhhhheeccCCcccchhhHHHhhhcccc----ccccccCcceeecCceecccccchhHHHHHHHHHHHH
Q 029480           52 VELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAAN----VDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMR  127 (192)
Q Consensus        52 veLPlWLA~~L~~~~~v~i~~P~~~~~~~~~~L~Adp~~----V~L~~~~~~fY~~g~~l~~l~~d~~l~~~L~~~f~~R  127 (192)
                      |+||+|+|..|..+++|+|..|++|+.++++++.|++..    ++|..+++|||++|..++.++  ..+..+|.+++..|
T Consensus         1 v~lP~w~a~~L~~~~~~~i~~p~~~~~~~~~~l~~e~~~~~~~~~l~~l~~~f~~~~~~l~~~~--~~ik~~l~~~~~~R   78 (108)
T PF05916_consen    1 VELPLWLAKELKKRNLVEIQPPDWFSIEYLNALEAEEKNNSNKVDLSKLPPYFYELGEMLLELL--ERIKRLLRDYLRIR   78 (108)
T ss_dssp             EEEEHHHHHHHHHTTSEEEE-TCCHCHHHHHHHHHHHCCCS-HCSCCTSSTTHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             CcCCcchHHHHHHcCCeeecCcHhhhHHHHHHHHhhhccccchhhhhcCChHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999988    899999999999999999999  78999999999999


Q ss_pred             HHHHHHhhhhh--hhhhhhhHHHhhhhhhh
Q 029480          128 YKDILTKAHTA--AYAVASKFLAVLTKEET  155 (192)
Q Consensus       128 ~~~I~~~a~~~--~~~~~~~~~~~Lt~~Er  155 (192)
                      +.+|.+.+.+.  .+.+.+.+..+||++||
T Consensus        79 ~~KI~~~~~~~~~~~~~~~~~~~~Ls~~Er  108 (108)
T PF05916_consen   79 LKKILSLAWHLLSGNDDPQEILENLSEEER  108 (108)
T ss_dssp             HHHHHHHHCHHHHHCTTCHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHhccccCCcHHHHccCCHhhC
Confidence            99999999999  55567889999999997

One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.

>KOG4071 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=9.9e-12  Score=98.21  Aligned_cols=142  Identities=18%  Similarity=0.242  Sum_probs=116.9

Q ss_pred             hhhhccceeceEEEeccCccccCCCCcccccccCCcccchhhhhhhhhhhhheeccCCcccchhhHHHhhhc-ccccccc
Q 029480           16 EILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQAD-AANVDLR   94 (192)
Q Consensus        16 dILa~~ekVpc~f~~~~~~lG~d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~P~~~~~~~~~~L~Ad-p~~V~L~   94 (192)
                      +++|+++.|.+.+++....+-+..+.. .++.+|.++.+|+|+|..|.+++.|+|..|.|++...+..+... -..--++
T Consensus         9 efia~~eli~I~P~~S~~~l~li~~d~-gp~~p~~~~rVpLWlAllLKkq~kc~Iv~P~wm~~~~L~~i~d~E~e~~tfs   87 (187)
T KOG4071|consen    9 EFIAENELIEIIPNISMDQLHLISGDI-GPFNPGVPCRVPLWLALLLKKQNKCRIVPPEWMDVDELEKIRDVEKESETFS   87 (187)
T ss_pred             HHHhcccceeeccCCcchhhhhhcCCC-cccCCCCcceehHHHHHHHhhccCceEeCcccccHHHHHHHHHHhhcccccc
Confidence            589999999999999999888633332 47999999999999999999999999999999998877666643 2233556


Q ss_pred             ccCcceeecCceecccccc-----hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhHHH
Q 029480           95 SRCPYFYEFGCKIAPIVGD-----RTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYE  159 (192)
Q Consensus        95 ~~~~~fY~~g~~l~~l~~d-----~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~lf~  159 (192)
                      .+.++|++++..|.++..|     +++..++.+++..|..|+...+...... .+.-+++||-.|..--+
T Consensus        88 ~lp~~~~ela~lL~n~a~Ddi~~~eeiR~lV~DI~d~R~aKlr~s~~~f~~~-~hakldNltLmEiN~~r  156 (187)
T KOG4071|consen   88 KLPFYYFELATLLLNFARDDIPDIEEIRTLVKDIRDIRLAKLRTSLDSFNRQ-AHAKLDNLTLMEINEIR  156 (187)
T ss_pred             cCChHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhHHHHhhH-hhcCcccceeeeeccch
Confidence            6678899999999998654     5899999999999999999998888653 45678889988876433

>PTZ00362 hypothetical protein; Provisional

Probab=99.16  E-value=4.4e-11  Score=106.21  Aligned_cols=147  Identities=18%  Similarity=0.205  Sum_probs=114.3

Q ss_pred             hccceeceEEEeccCcccc--CCCCcccccccCCcccchhhhhhhhhhhhheeccCCcccchhhHHHhhhcc-cc-cccc
Q 029480           19 IEEELVPVVFHKSANGVKV--DPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADA-AN-VDLR   94 (192)
Q Consensus        19 a~~ekVpc~f~~~~~~lG~--d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~P~~~~~~~~~~L~Adp-~~-V~L~   94 (192)
                      |-.|.|-|+-..|+|++.+  -.|-.-.++++|.++++|+|||..|.+++.|+|.+|.|++.+....++... +. -.+.
T Consensus       282 al~eLvVvKalvDip~~~L~lI~G~digpfkag~~~~VPLWLAi~LKq~~KC~IvpP~Wm~ie~Lk~I~eeE~~~~~~Ft  361 (479)
T PTZ00362        282 ALDELVVVKALVDIPYIDLSEIEGFDFKEMKSGERQWLPIYIAKELSHFGLVTVEFPFWFYIKNLKNIYEREFEDQNELT  361 (479)
T ss_pred             HhcceEEEEEecCCCCCcceeeeccccCCcCCCCeeEEeeeehhhhcccCceEEeCcccccHHHHHHHHHHHhhCccccc
Confidence            4578999999999999875  233233589999999999999999999999999999999988876666443 33 2333


Q ss_pred             cc-CcceeecCceeccc-------cc-c----------hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhh
Q 029480           95 SR-CPYFYEFGCKIAPI-------VG-D----------RTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEET  155 (192)
Q Consensus        95 ~~-~~~fY~~g~~l~~l-------~~-d----------~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er  155 (192)
                      .+ +|||++++..+.+.       .. |          .+++..+.++...|..+|.....+.......--+..|+.+|.
T Consensus       362 ~LP~p~y~EIa~lLl~~~~F~~~~a~edi~~~d~~~~~~kVR~LIeDIrd~R~~KIr~~Le~~~~~ss~i~LdNLslmEi  441 (479)
T PTZ00362        362 DLPSPYFFEISSMFLENNIFKKVTPIETIGQRTVYKYISKVAGLVEDIRYKRLKKIMNHLENQDVHSSIIYIDNLQISET  441 (479)
T ss_pred             cCCchhHHHHHHHHHhcccccccCChhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEECCccHHHH
Confidence            33 47999999988876       21 1          479999999999999999998877643223446889999999


Q ss_pred             hHHHHHHHHH
Q 029480          156 NLYEAAQSSM  165 (192)
Q Consensus       156 ~lf~~g~~s~  165 (192)
                      .+-+....+.
T Consensus       442 ~~Vn~~Ls~f  451 (479)
T PTZ00362        442 YCVNQLLSVF  451 (479)
T ss_pred             HHHHHHHHHH
Confidence            8887754443

>COG5093 Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=6e-06  Score=64.02  Aligned_cols=138  Identities=14%  Similarity=0.148  Sum_probs=94.1

Q ss_pred             hhhccceeceEEEeccCccccCCCCcccccccCCcccchhhhhhhhhhhhheeccCCcccchhhHHH-hhhcccc-cccc
Q 029480           17 ILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRRE-IQADAAN-VDLR   94 (192)
Q Consensus        17 ILa~~ekVpc~f~~~~~~lG~d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~P~~~~~~~~~~-L~Adp~~-V~L~   94 (192)
                      ++|.+|.|...+....+.+-+-....-+++.+-.+..+|||+|.-|.+++.|+|..|.|+...-... +.-+-.. -..+
T Consensus        18 fia~nE~i~I~P~~t~~qlrL~~~~t~p~m~p~~~~rvpLw~ALlLKkqn~c~Iv~P~wl~~~~L~~~i~~e~~~~d~fS   97 (185)
T COG5093          18 FIAYNELIEIEPMTTIPQLRLLERATYPPMMPLDIARVPLWAALLLKKQNMCKIVLPSWLQLESLKMSIDVEIEKADEFS   97 (185)
T ss_pred             HHhcccceeeecccccchhhhhhhhcCCCCCCchhhhhHHHHHHHHHhcccccccChhHhhHHHHHhhhhHHHhcccccc
Confidence            6899999999999999988763333345788888999999999999999999999999998664333 3333222 2234


Q ss_pred             ccCcceeecCceecccccc-----hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhh
Q 029480           95 SRCPYFYEFGCKIAPIVGD-----RTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETN  156 (192)
Q Consensus        95 ~~~~~fY~~g~~l~~l~~d-----~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~  156 (192)
                      .+.+||+.++..|.+.--|     +++..++.++-..|..+.+.--- ..+ ..+--++.||..|..
T Consensus        98 elp~~wl~lA~~Lln~~~ddvediee~r~iv~dirEiRq~K~lkGlk-~ln-e~~L~ldNl~l~EiN  162 (185)
T COG5093          98 ELPPYWLPLATELLNENCDDVEDIEESRMIVEDIREIRQAKTLKGLK-CLN-EKALNLDNLTLFEIN  162 (185)
T ss_pred             cCCchHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHhhHh-hhh-hhhcCccccchhhhh
Confidence            4679999999988876543     45666666666666655443211 111 112235666666643

>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]

Probab=95.44  E-value=0.014  Score=48.04  Aligned_cols=54  Identities=28%  Similarity=0.262  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHHhhhh
Q 029480          115 TIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW  171 (192)
Q Consensus       115 ~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~lf~~g~~s~~~~~~W  171 (192)
                      .+.+.....|.+|+.+|+..|.-.+.+   +.+.+||.+|+.||...+....+...-
T Consensus        61 t~~~~~r~ifqrR~~Kiv~~A~~~~~~---~~~~~Lt~eEk~ly~~l~~~I~~e~~~  114 (223)
T COG1711          61 TAKSDARSIFQRRYGKIVSRAIYDVPG---ETISNLTPEEKELYEDLVNFIEDERIS  114 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc---cchhcCCHHHHHHHHHHHHHHhhchhh
Confidence            566777788999999999999887653   238999999999999999887766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
2q9q_D	220	The Crystal Structure Of Full Length Human Gins Com		8e-14
2e9x_C	219	The Crystal Structure Of Human Gins Core Complex Le		9e-14
2eho_D	216	Crystal Structure Of Human Gins Complex Length = 21		2e-13

>pdb|2Q9Q|D Chain D, The Crystal Structure Of Full Length Human Gins Complex Length = 220

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 40  SAEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSR 96
            AE D  V +G+K+ELP WL++ L+   R+ +S+ +P  + +  R    AD   VDL   
Sbjct: 57  GAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKM 116
Query: 97  CPYFYEFGCKI----APIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTK 152
            P+FY FG ++    +P   D  I + LL TF  R++ I+  +  A     S  +A L +
Sbjct: 117 GPHFYGFGSQLLHFDSPENAD--ISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDE 174
Query: 153 EETNLYEAAQSSMAAFKKWRIG 174
            E  L++  Q  +  F+ W  G
Sbjct: 175 MERGLFQTGQKGLNDFQCWEKG 196

>pdb|2E9X|C Chain C, The Crystal Structure Of Human Gins Core Complex Length = 219

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 41  AEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
           AE D  V +G+K+ELP WL++ L+   R+ +S+ +P  + +  R    AD   VDL    
Sbjct: 57  AETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMG 116
Query: 98  PYFYEFGCKI----APIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKE 153
           P+FY FG ++    +P   D  I + LL TF  R++ I+  +  A     S  +A L + 
Sbjct: 117 PHFYGFGSQLLHFDSPENAD--ISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEM 174
Query: 154 ETNLYEAAQSSMAAFKKWRIG 174
           E  L++  Q  +  F+ W  G
Sbjct: 175 ERGLFQTGQKGLNDFQCWEKG 195

>pdb|2EHO|D Chain D, Crystal Structure Of Human Gins Complex Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 41  AEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
           AE D  V +G+K+ELP WL++ L+   R+ +S+ +P  + +  R    AD   VDL    
Sbjct: 54  AETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKXG 113
Query: 98  PYFYEFGCKI----APIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKE 153
           P+FY FG ++    +P   D  I + LL TF  R++ I   +  A     S  +A L + 
Sbjct: 114 PHFYGFGSQLLHFDSPENAD--ISQSLLQTFIGRFRRIXDSSQNAYNEDTSALVARLDEX 171
Query: 154 ETNLYEAAQSSMAAFKKWRIG 174
           E  L++  Q  +  F+ W  G
Sbjct: 172 ERGLFQTGQKGLNDFQCWEKG 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
2e9x_C	219	GINS complex subunit 3; eukaryotic DNA replication	1e-57

>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D* Length = 219

 Score =  179 bits (456), Expect = 1e-57
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 13/196 (6%)

Query: 10  KYFDIDEILIEEELVPVVFHKSANGVK---VDPSA---EKDCVDEGAKVELPFWLSQELY 63
            +  +D+IL+  E +PV    +   +    ++ SA     + V +G+K+ELP WL++ L+
Sbjct: 21  NFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLF 80

Query: 64  L--RQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVG--DRTIGKM 119
              R+ +S+ +P  + +  R    AD   VDL    P+FY FG ++       +  I + 
Sbjct: 81  DNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQS 140

Query: 120 LLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIGGPRIQ 179
           LL TF  R++ I+  +  A     S  +A L + E  L++  Q  +  F+ W  G     
Sbjct: 141 LLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQI 200

Query: 180 RASVL---GRKRKPID 192
            AS L    +KRK  D
Sbjct: 201 TASNLVQNYKKRKFTD 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
2e9x_C	219	GINS complex subunit 3; eukaryotic DNA replication	100.0
3anw_B	171	GINS23, putative uncharacterized protein; SLD5 sup	99.61
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	99.49
3anw_A	188	GINS51, putative uncharacterized protein; SLD5 sup	95.16

>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*

Probab=100.00  E-value=9e-61  Score=391.92  Aligned_cols=192  Identities=28%  Similarity=0.504  Sum_probs=160.2

Q ss_pred             CCCCCCCCCcccccchhhhccceeceEEEeccCccc--c-CC--CCcccc-cccCCcccchhhhhhhh--hhhhheeccC
Q 029480            1 MNDTSSRNGKYFDIDEILIEEELVPVVFHKSANGVK--V-DP--SAEKDC-VDEGAKVELPFWLSQEL--YLRQAVSINV   72 (192)
Q Consensus         1 ~~~~~~~~~~YydiddILa~~ekVpc~f~~~~~~lG--~-d~--~~~~~~-l~~g~kveLPlWLA~~L--~~~~~v~i~~   72 (192)
                      ||.+.+++++|||||||||++|+|||+|++++||||  + |+  ++...+ |++|++||||||||+.|  ..+++|+|++
T Consensus        12 ~~~~~~~~~~YydiDdILa~~ekVpC~f~~~~~~lG~~~Ld~~a~~~~~d~l~~G~kveLPlWLA~~L~~~~~~~v~i~~   91 (219)
T 2e9x_C           12 ESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVEL   91 (219)
T ss_dssp             CCCTTSSSCCTTCHHHHHHTTSEEEEEESSCBTTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEECC
T ss_pred             CccccccccCcCCHHHHHhcCCeeeeEEeecCCCCcHhhcCCccCCCCcccCCCCCEecchHHHHHHHHHhccCceEEeC
Confidence            455557889999999999999999999999999999  7 88  455456 99999999999999999  8899999999


Q ss_pred             CcccchhhHHHhhhccccccccccCcceeecCceeccc--ccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhh
Q 029480           73 PACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPI--VGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVL  150 (192)
Q Consensus        73 P~~~~~~~~~~L~Adp~~V~L~~~~~~fY~~g~~l~~l--~~d~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~L  150 (192)
                      |++|++.++++|+|||++|||+++|||||++|.+|+.+  .+|++|.++|++||++|+++|+++|+|..++++++|..+|
T Consensus        92 P~~y~~~~~~~L~Adp~~VdL~~~~p~fY~lG~~L~~l~~~ed~~L~~~L~~tf~~R~~~I~d~a~~~~~~~~~~~~~~L  171 (219)
T 2e9x_C           92 PKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARL  171 (219)
T ss_dssp             CGGGSHHHHHHHHHCGGGSCTTTSCSSHHHHHHHGGGGCCTTHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHTTC
T ss_pred             chhhhHHHHHHHhcCCcEEecccCCchHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHhcC
Confidence            99999999999999999999999999999999999999  7789999999999999999999999999766778999999


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhcCc-cceeeccc--cccCCCCC
Q 029480          151 TKEETNLYEAAQSSMAAFKKWRIGGP-RIQRASVL--GRKRKPID  192 (192)
Q Consensus       151 t~~Er~lf~~g~~s~~~~~~W~~~~~-~~~~~~~~--~rkrk~~~  192 (192)
                      |++||+||++|+++.++|++|++|+. +|++|+++  |||||+.+
T Consensus       172 d~~Er~Lf~~g~~~~~~~~~W~~~~~~~i~~s~~v~~~~krk~~~  216 (219)
T 2e9x_C          172 DEMERGLFQTGQKGLNDFQCWEKGQASQITASNLVQNYKKRKFTD  216 (219)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCC---------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhhccccc
Confidence            99999999999999999999999877 99999995  88888653

>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=99.61  E-value=4.2e-16  Score=122.05  Aligned_cols=148  Identities=19%  Similarity=0.211  Sum_probs=113.2

Q ss_pred             cccccchhhhccceeceEEEeccCccccCCCCcccccccCCcccchhhhhhhhhhhhheeccC--CcccchhhHHHhhhc
Q 029480           10 KYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINV--PACFNQKTRREIQAD   87 (192)
Q Consensus        10 ~YydiddILa~~ekVpc~f~~~~~~lG~d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~--P~~~~~~~~~~L~Ad   87 (192)
                      +||-=...++....|||++..+.           .+.++|+.++||.|+|..|...|+|+|.-  +..- ...-+++-.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~f-----------~~~~kG~e~~lp~wlA~~L~e~g~vei~d~~~~~I-~eL~~il~eE   68 (171)
T 3anw_B            1 NYFQGSHMFTGKALIAVKVMKPF-----------GDWKSGDIVLVEDWKARELWEAGVVEIVDETDKII-GEIDKVIAEE   68 (171)
T ss_dssp             CCCCCCSCCCSCSEEEEEECSCC-----------TTCCSSCEEEEEHHHHHHHHHTTSEEECCTHHHHH-HHHHHHHHHH
T ss_pred             CccccccccccceeeehHHhhhh-----------hhcCCCCeeeccHHHHHHHHHCCCEeeccccchHH-HHHHHHHHHh
Confidence            46666777778888999887543           36899999999999999999999999964  3333 3556666555


Q ss_pred             cccccccccCcceeecCceecccc-c--------c-----------hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 029480           88 AANVDLRSRCPYFYEFGCKIAPIV-G--------D-----------RTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFL  147 (192)
Q Consensus        88 p~~V~L~~~~~~fY~~g~~l~~l~-~--------d-----------~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~  147 (192)
                      -..-.|..+.++||.........+ .        |           .++.+.+.+++..|+++|+..|....+  +.+++
T Consensus        69 r~~~~L~~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la~~~~~--~~eil  146 (171)
T 3anw_B           69 RESEPLTLLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRDLKLIRFNKILKAVMLRPN--SLELL  146 (171)
T ss_dssp             TTSSSCCCCCTTHHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--C--CHHHH
T ss_pred             hccCccccCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHHHH
Confidence            555688888899998665544322 1        2           356778899999999999999977764  37899


Q ss_pred             HhhhhhhhhHHHHHHHHHHHhhhhhhc
Q 029480          148 AVLTKEETNLYEAAQSSMAAFKKWRIG  174 (192)
Q Consensus       148 ~~Lt~~Er~lf~~g~~s~~~~~~W~~~  174 (192)
                      ++||++|+.||...+.+   .+.|...
T Consensus       147 ~rLTpEEk~iy~~l~~~---i~~w~g~  170 (171)
T 3anw_B          147 SRLAPEERRIYLQMSKI---RNEWLGD  170 (171)
T ss_dssp             TTSCHHHHHHHHHHHHH---HHHHTCC
T ss_pred             hcCCHHHHHHHHHHHHH---HHHHccC
Confidence            99999999999999988   7777653

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*

Probab=99.49  E-value=2.5e-14  Score=113.74  Aligned_cols=145  Identities=20%  Similarity=0.250  Sum_probs=113.2

Q ss_pred             hhhhccceeceEEEeccCccccCCCCcccccccCCcccchhhhhhhhhhhhheeccCCcccchhhHHHhhhcccc-cccc
Q 029480           16 EILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAAN-VDLR   94 (192)
Q Consensus        16 dILa~~ekVpc~f~~~~~~lG~d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~P~~~~~~~~~~L~Adp~~-V~L~   94 (192)
                      +|||++|.|.+++++.+.++-+-.|. -.++.+|.++++|+|||..|.+++.|+|.+|.|++.+..+.+...... -.+.
T Consensus         7 eFlae~e~I~IvP~f~~~~~~lI~g~-~gPf~p~~~~~VPLWLAl~Lkk~~kc~I~~P~Wl~~e~L~~~~~~E~~~~~f~   85 (185)
T 2e9x_B            7 EFLAEKELVTIIPNFSLDKIYLIGGD-LGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFT   85 (185)
T ss_dssp             HHHHTTSEEEEEESSCBCCEEETTEE-ECCBCTTCCEEEEHHHHHHHHHTTSEEECCCTTCCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHhcCCeEEEEeCCCCCceeeeecc-cCCcCCCCcceeHHHHHHHHHhCCceEEECCcccCHHHHHHHHHHHhcccccc
Confidence            68999999999999999988763332 257999999999999999999999999999999998877666533222 2344


Q ss_pred             ccCc-ceeecCceecccccc-----hhHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhHHHhhhhhhhhHHHHH
Q 029480           95 SRCP-YFYEFGCKIAPIVGD-----RTIGKMLLSTFQMRYKDILTKAHTAAY-AVASKFLAVLTKEETNLYEAA  161 (192)
Q Consensus        95 ~~~~-~fY~~g~~l~~l~~d-----~~l~~~L~~~f~~R~~~I~~~a~~~~~-~~~~~~~~~Lt~~Er~lf~~g  161 (192)
                      .+.. |||+.+..|++...|     .+++.++.++...|..||.+....... +...--+.+|+..|....+..
T Consensus        86 ~lP~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~~~l~nls~mEin~iR~f  159 (185)
T 2e9x_B           86 PMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTF  159 (185)
T ss_dssp             CCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCccHHHHHHhHHH
Confidence            4444 699999999876653     478999999999999999988766532 112234688999998866655

>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=95.16  E-value=0.0074  Score=47.52  Aligned_cols=46  Identities=17%  Similarity=0.292  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHH
Q 029480          115 TIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAA  167 (192)
Q Consensus       115 ~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~lf~~g~~s~~~  167 (192)
                      .+.+++.++|..|+++|++.|...       ...+||++|+.||.........
T Consensus        62 ~~~~~~~~i~~~Rl~KIv~~a~~~-------~~~~Lt~EEk~l~~~l~~~i~~  107 (188)
T 3anw_A           62 IAESLMKEIIKLRLHKIVDLAVEG-------KIAEMTAEEKRLFNVIRAFIER  107 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-------EECCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-------hhhhCCHHHHHHHHHHHHHHHh
Confidence            477889999999999999999221       3689999999999998877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d2e9xc1	105	a.278.1.3 (C:1088-1192) GINS complex subunit 3, PS	1e-34
d2e9xc2	87	d.344.1.4 (C:1001-1087) GINS complex subunit 3, PS	2e-16

>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF3 C-terminal domain-like
domain: GINS complex subunit 3, PSF3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 1e-34
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 72  VPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVG--DRTIGKMLLSTFQMRYK 129
           +P  + +  R    AD   VDL    P+FY FG ++       +  I + LL TF  R++
Sbjct: 1   LPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFR 60

Query: 130 DILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIG 174
            I+  +  A     S  +A L + E  L++  Q  +  F+ W  G
Sbjct: 61  RIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKG 105

>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF3 N-terminal domain-like
domain: GINS complex subunit 3, PSF3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 2e-16
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 11 YFDIDEILIEEELVPVVFHKSANGV---KVDPSAEKDC---VDEGAKVELPFWLSQELYL 64
          +  +D+IL+  E +PV    +   +    ++ SA  +    V +G+K+ELP WL++ L+ 
Sbjct: 19 FLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFD 78

Query: 65 RQAVSINV 72
           +   ++V
Sbjct: 79 NKRRILSV 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d2e9xc1	105	GINS complex subunit 3, PSF3 {Human (Homo sapiens)	99.97
d2e9xc2	87	GINS complex subunit 3, PSF3 {Human (Homo sapiens)	99.91
d2e9xb2	61	DNA replication complex GINS protein PSF2 {Human (	98.69
d2e9xb1	112	DNA replication complex GINS protein PSF2 {Human (	95.87

>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF3 C-terminal domain-like
domain: GINS complex subunit 3, PSF3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-32  Score=199.55  Aligned_cols=103  Identities=28%  Similarity=0.500  Sum_probs=99.2

Q ss_pred             CCcccchhhHHHhhhccccccccccCcceeecCceeccccc--chhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHh
Q 029480           72 VPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVG--DRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAV  149 (192)
Q Consensus        72 ~P~~~~~~~~~~L~Adp~~V~L~~~~~~fY~~g~~l~~l~~--d~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~  149 (192)
                      +|++|++.++++|+|||++||||++|||||++|.+|+++++  |.+|+++|.+||++|+++|+|+|+|..++++++|+.+
T Consensus         1 lP~~f~~~v~~alkADp~~VdL~~~~p~fY~lg~~l~~l~~~e~~~l~~~L~~tf~~R~~~I~d~a~n~~~~~~~~~~~~   80 (105)
T d2e9xc1           1 LPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVAR   80 (105)
T ss_dssp             CCGGGSHHHHHHHHHCGGGSCTTTSCSSHHHHHHHGGGGCCTTHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHTT
T ss_pred             CChhHhHHHHHHHhcCCCeechhhcCcHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhcccccCchHHHHHh
Confidence            69999999999999999999999999999999999999997  4589999999999999999999999988788999999


Q ss_pred             hhhhhhhHHHHHHHHHHHhhhhhhc
Q 029480          150 LTKEETNLYEAAQSSMAAFKKWRIG  174 (192)
Q Consensus       150 Lt~~Er~lf~~g~~s~~~~~~W~~~  174 (192)
                      ||++||+||++|+++.+++++|++|
T Consensus        81 Lde~Er~Lf~~g~~s~~~~~~W~~g  105 (105)
T d2e9xc1          81 LDEMERGLFQTGQKGLNDFQCWEKG  105 (105)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999987

>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF3 N-terminal domain-like
domain: GINS complex subunit 3, PSF3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.6e-26  Score=158.08  Aligned_cols=64  Identities=30%  Similarity=0.627  Sum_probs=52.5

Q ss_pred             CCcccccchhhhccceeceEEEeccCccc--c-CCCCcc---cccccCCcccchhhhhhhhhh--hhheecc
Q 029480            8 NGKYFDIDEILIEEELVPVVFHKSANGVK--V-DPSAEK---DCVDEGAKVELPFWLSQELYL--RQAVSIN   71 (192)
Q Consensus         8 ~~~YydiddILa~~ekVpc~f~~~~~~lG--~-d~~~~~---~~l~~g~kveLPlWLA~~L~~--~~~v~i~   71 (192)
                      ..+|||||||||++|||||+|+.++|+||  | |++++.   .+|++|+++|||||||+.|+.  +++|+|+
T Consensus        16 ~~nYydIDDILa~~EkvPc~f~~~~p~LG~~~Ld~~~~~~~~~~i~~GskveLPLWLA~~L~~r~r~ivsVe   87 (87)
T d2e9xc2          16 EENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVE   87 (87)
T ss_dssp             SCCTTCHHHHHHTTSEEEEEESSCBTTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEEC
T ss_pred             cccccCHHHHhhcCCcccEEEEecCcccchhhcCCCCCccccccCCCCCCccchHHHHHHHhhcCcceEeeC
Confidence            34999999999999999999999999999  6 877643   469999999999999999985  4688775

>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF2 N-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.9e-09  Score=68.04  Aligned_cols=54  Identities=30%  Similarity=0.444  Sum_probs=47.8

Q ss_pred             hhhhccceeceEEEeccCccccCCCCcccccccCCcccchhhhhhhhhhhhheec
Q 029480           16 EILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSI   70 (192)
Q Consensus        16 dILa~~ekVpc~f~~~~~~lG~d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i   70 (192)
                      +|||++|.|.+.+++...++.+-.+. -.++.+|.++++|||||..|.+++.|+|
T Consensus         7 eFlae~e~v~IvP~~~~~~~~li~g~-~gpf~p~~p~~VPLWlAl~LK~q~kC~I   60 (61)
T d2e9xb2           7 EFLAEKELVTIIPNFSLDKIYLIGGD-LGPFNPGLPVEVPLWLAINLKQRQKCRL   60 (61)
T ss_dssp             HHHHTTSEEEEEESSCBCCEEETTEE-ECCBCTTCCEEEEHHHHHHHHHTTSEEE
T ss_pred             hhhhcCCeEEEEcCcccCceEeeccc-cCCcCCCCccccHHHHHHHHhccCceeE
Confidence            68999999999999999998873333 2579999999999999999999999987

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0032  Score=43.95  Aligned_cols=91  Identities=15%  Similarity=0.168  Sum_probs=63.0

Q ss_pred             CCcccchhhHHHhhhcc-ccccccccC-cceeecCceecccccc-----hhHHHHHHHHHHHHHHHHHHhhhhhhhh-hh
Q 029480           72 VPACFNQKTRREIQADA-ANVDLRSRC-PYFYEFGCKIAPIVGD-----RTIGKMLLSTFQMRYKDILTKAHTAAYA-VA  143 (192)
Q Consensus        72 ~P~~~~~~~~~~L~Adp-~~V~L~~~~-~~fY~~g~~l~~l~~d-----~~l~~~L~~~f~~R~~~I~~~a~~~~~~-~~  143 (192)
                      +|.|++.+....+.... ..-.+..+. +||++++..+++...|     .+++..+.++...|..||.......... ..
T Consensus         1 PP~Wl~ve~L~~~~~~E~~~~~f~~lP~~~~~Eia~~ll~~a~ddi~~~~~vr~Lv~DI~~vR~~Klr~~~~~l~~~~~~   80 (112)
T d2e9xb1           1 PPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEA   80 (112)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCSSCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCccccHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            58888877766555432 223333333 4888999999988764     4899999999999999999877655321 12


Q ss_pred             hhHHHhhhhhhhhHHHHHH
Q 029480          144 SKFLAVLTKEETNLYEAAQ  162 (192)
Q Consensus       144 ~~~~~~Lt~~Er~lf~~g~  162 (192)
                      .--+.+++..|....+...
T Consensus        81 ~~~l~ni~~mEin~iR~f~   99 (112)
T d2e9xb1          81 HAKLDNLTLMEINTSGTFL   99 (112)
T ss_dssp             EEECTTCCHHHHHHHHHHH
T ss_pred             eeeecchhHHHHHHhHHHH
Confidence            2347888999977655443