Citrus Sinensis ID: 029481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MASPWLHLLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWLISALLIF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccccEEEEcccccccccHHHccccHHHHcccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccEEEccccccEEEEcEcccccccEEEEcccccHHHHHcccccEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MASPWLHLLLLVSFLSMNllvkcdtdeedtLLQGLNSYReslnltsltknknAECLADELAdqfknqpctnstgantvpgtekqlsnypdllakchlnvsntrdgivmpacvpnlehslvlsnftksqysdslndtkykgagigsednWIVVILTtstpagsyvpynaasLISNIGLIYCLLFWLISALLIF
Flexible Loop (DISEMBL)
MASPWLHLLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGagigsednWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWLISALLIF
Low Complexity Region (SEG)
MAspwlhllllvsflsmnllVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWLISALLIF
Disordered region (IsUnstruct)
****WLHLLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSL*******CL*****************************SNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWLISALLI*
Disordered Region (DISOPRED)
***PWLHLLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWLISALLIF
Disordered Region (DISEMBL)
MASPWLHLLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWLISALLIF
Disordered Region (DISPRO)
*ASPWLHLLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWLISALLIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASPWLHLLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWLISALLIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q84MC0	200	Uncharacterized GPI-ancho	yes	no	0.911	0.875	0.633	9e-61
P59833	196	Uncharacterized GPI-ancho	no	no	0.760	0.744	0.693	3e-54
Q84VZ5	199	Uncharacterized GPI-ancho	no	no	0.848	0.819	0.491	3e-38
Q8GUL8	189	Uncharacterized GPI-ancho	no	no	0.802	0.814	0.533	2e-36

>sp|Q84MC0|UGPI4_ARATH Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana GN=At3g06035 PE=2 SV=1

 Score =  232 bits (592), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 114/180 (63%), Positives = 137/180 (76%), Gaps = 5/180 (2%)

Query: 18  NLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANT 77
           N  V  DTDEED LL G+NSYR + NLT L+KN+NAECLADE+ADQFKN+PCTN TG+ T
Sbjct: 19  NRPVLSDTDEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSAT 78

Query: 78  VPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTK 137
           VPGTE Q +NYP +LAKCHLNVS+TRDG +MPACVP LE +LVL+NFTKSQYS SLND+K
Sbjct: 79  VPGTEPQFANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSK 138

Query: 138 YKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISN-----IGLIYCLLFWLISALLIF 192
           + G GIG ED+WIVV+LTT+TP GSY         SN     IGL+  L+ ++ S+   F
Sbjct: 139 FTGIGIGKEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGLVSYLVIFMYSSFCFF 198

Arabidopsis thaliana (taxid: 3702)

>sp|P59833|UGPI3_ARATH Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana GN=At5g19250 PE=1 SV=1

 Score =  211 bits (536), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/147 (69%), Positives = 119/147 (80%), Gaps = 1/147 (0%)

Query: 20  LVKCDT-DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTV 78
           LV  DT DEED LL G+NSYR SLNLT+L  N NAECLADE+ADQFKNQPCTN+TG+ +V
Sbjct: 21  LVLSDTADEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASV 80

Query: 79  PGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKY 138
           PGT     N P+LL+KC LN + TRDG ++PACVPNL+ SLVL+NFT SQYS  LND+K+
Sbjct: 81  PGTTPGFPNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKF 140

Query: 139 KGAGIGSEDNWIVVILTTSTPAGSYVP 165
            G GIGS+DNWIVV+LTTSTP GSY P
Sbjct: 141 TGIGIGSDDNWIVVVLTTSTPEGSYSP 167

Arabidopsis thaliana (taxid: 3702)

>sp|Q84VZ5|UGPI2_ARATH Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana GN=At5g19240 PE=2 SV=2

 Score =  157 bits (398), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 114/167 (68%), Gaps = 4/167 (2%)

Query: 21  VKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPG 80
           V  +TD E+ L    N YRES+NLT+L KNKNAECLADE+ DQ +NQPCTN+TG+ +VPG
Sbjct: 23  VLSNTDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVPG 82

Query: 81  TEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKG 140
           T+  + N+P+LLAKC LN + TRDG+++  C P    +  LS+F  +  + +LND+K+ G
Sbjct: 83  TDPGIPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSFA-NVLTKNLNDSKFTG 141

Query: 141 AGIG--SEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWL 185
           AG+G  S+  W+V +LTT+TP GSY    A +   N GL+   L +L
Sbjct: 142 AGVGIDSDGIWLVTVLTTNTPGGSYSNSGAFAFGVN-GLVSSSLMFL 187

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUL8|UGPI1_ARATH Uncharacterized GPI-anchored protein At5g19230 OS=Arabidopsis thaliana GN=At5g19230 PE=1 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 107/165 (64%), Gaps = 11/165 (6%)

Query: 1   MASPWLHLLLLVS-FLSMNLLVKCDTD-EEDTLLQGLNSYRESLNLTSLTKNKNAECLAD 58
           MA   LHLL L+S FLS++ LV   TD E+D LL   N YR  LNL +LTKN+NAECLAD
Sbjct: 1   MAISKLHLLCLLSVFLSLHRLVLSGTDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLAD 60

Query: 59  ELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHS 118
           E+ DQ KNQPCTN+  +  VPG         +LLAKC LN +  RDG++M  C P  + +
Sbjct: 61  EVVDQLKNQPCTNTNNSAPVPGN--------NLLAKCSLNTTVVRDGVIMQVCFPKHDKN 112

Query: 119 LVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSY 163
             LSNF  S    +LND+K  G GIGS D W+VVILTT+TP G Y
Sbjct: 113 PDLSNF-NSVVLKNLNDSKITGIGIGSGDIWVVVILTTNTPEGGY 156

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
118485725	205	unknown [Populus trichocarpa]	0.994	0.931	0.661	2e-67
351728015	203	uncharacterized protein LOC100306685 pre	0.968	0.916	0.668	3e-66
359807155	198	uncharacterized protein LOC100814074 pre	0.848	0.823	0.740	5e-65
351721661	198	uncharacterized protein LOC100306063 pre	0.859	0.833	0.718	1e-64
388515277	202	unknown [Lotus japonicus]	1.0	0.950	0.623	1e-64
351722561	199	uncharacterized protein LOC100499681 pre	0.911	0.879	0.689	1e-64
388515291	199	unknown [Lotus japonicus]	0.932	0.899	0.651	1e-63
255552305	172	conserved hypothetical protein [Ricinus	0.796	0.889	0.758	4e-63
357480763	201	GPI-anchored protein, putative [Medicago	0.963	0.920	0.616	3e-62
388504872	201	unknown [Medicago truncatula]	0.963	0.920	0.616	3e-62

>gi|118485725|gb|ABK94712.1| unknown [Populus trichocarpa]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 159/204 (77%), Gaps = 13/204 (6%)

Query: 1   MASPWLHLLL--LVSFLSMNLL---VKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAEC 55
           MAS    LL    V F+ + L+   V CD D+ED LLQG+N+YR S NLT+LTKN NAEC
Sbjct: 1   MASSRFSLLFPFFVFFIILCLISHPVICDGDQEDALLQGINNYRTSFNLTTLTKNDNAEC 60

Query: 56  LADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNL 115
           LA+E+ADQFKNQPCTN+TG+NTVPGTE Q  NYP LLAKCHLNVSNTRDG VMPACVP+L
Sbjct: 61  LAEEIADQFKNQPCTNTTGSNTVPGTEPQFPNYPSLLAKCHLNVSNTRDGAVMPACVPHL 120

Query: 116 EHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVP-------YNA 168
           + SLVL+NFT++ YSD+LNDTK+ GAGIGS+ NWIVV+LTTSTP GSYV        YNA
Sbjct: 121 DPSLVLTNFTRTPYSDNLNDTKFTGAGIGSDGNWIVVVLTTSTPEGSYVTSKTDGSDYNA 180

Query: 169 ASLIS-NIGLIYCLLFWLISALLI 191
           A+L + N GLIY LLF LI +L +
Sbjct: 181 ANLTAKNTGLIYHLLFLLIGSLFL 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728015|ref|NP_001238716.1| uncharacterized protein LOC100306685 precursor [Glycine max] gi|255629271|gb|ACU14980.1| unknown [Glycine max]

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 149/193 (77%), Gaps = 7/193 (3%)

Query: 6   LHLLLLVSFLSMNLLVKCDT-DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQF 64
           L  +LL S L  N  VKCD  DEED L QG+N YRESLNLTSLTKN+NA C ADE+A QF
Sbjct: 10  LFTVLLSSILLSNHSVKCDDHDEEDDLYQGINKYRESLNLTSLTKNENANCFADEIAGQF 69

Query: 65  KNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNF 124
           KNQPCTN+TGANTVPGTE Q SNYPDLL KC LN+SNTRDGI MPACVP L  S+VL+NF
Sbjct: 70  KNQPCTNTTGANTVPGTEPQFSNYPDLLNKCQLNISNTRDGIAMPACVPGLVSSVVLTNF 129

Query: 125 TKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPY------NAASLISNIGLI 178
           T+S YS +LND+KY G GIGSEDNWIVV+LTT+TP GS+VP       + A+ +S IG I
Sbjct: 130 TQSLYSGNLNDSKYTGIGIGSEDNWIVVVLTTNTPEGSFVPETETKTDSGANFVSKIGSI 189

Query: 179 YCLLFWLISALLI 191
           YC +F L+S L +
Sbjct: 190 YCSMFLLVSNLFL 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807155|ref|NP_001241609.1| uncharacterized protein LOC100814074 precursor [Glycine max] gi|255640671|gb|ACU20620.1| unknown [Glycine max]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 123/166 (74%), Positives = 141/166 (84%), Gaps = 3/166 (1%)

Query: 18  NLLVKC-DTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGAN 76
           N  VKC D DEED L QG+N YRESLNLTSLTKN+NA C ADE+ADQFKNQPCTN+TGAN
Sbjct: 21  NHSVKCGDRDEEDDLYQGINKYRESLNLTSLTKNENANCFADEMADQFKNQPCTNTTGAN 80

Query: 77  TVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDT 136
           TVPGTE + SNYPDLL KCHLN+SNTRDGIVMPACVP L  S+VL+NFT+S YS +LND+
Sbjct: 81  TVPGTEPRFSNYPDLLNKCHLNISNTRDGIVMPACVPGLVSSVVLTNFTQSLYSGNLNDS 140

Query: 137 KYKGAGIGSEDNWIVVILTTSTPAGSYVPY--NAASLISNIGLIYC 180
           K+ G GIGSEDNWIVV+L+T+TP GS+VP   + A+LIS IGLIYC
Sbjct: 141 KFTGIGIGSEDNWIVVVLSTNTPEGSFVPETDSGANLISKIGLIYC 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721661|ref|NP_001236961.1| uncharacterized protein LOC100306063 precursor [Glycine max] gi|255627423|gb|ACU14056.1| unknown [Glycine max]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 141/167 (84%), Gaps = 2/167 (1%)

Query: 21  VKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPG 80
           VKCD DEED L QG+N YR SLNL +LT+N NA+CLA+++ADQFK QPCTN+TGANTVPG
Sbjct: 26  VKCDDDEEDNLYQGINKYRASLNLKALTRNDNADCLAEKIADQFKKQPCTNTTGANTVPG 85

Query: 81  TEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKG 140
           TE Q SNYPDLL+KC L +SNTRDG VMPACVP+L  SLVL+NFTKS YSDSLNDTKY G
Sbjct: 86  TEPQFSNYPDLLSKCDLAISNTRDGNVMPACVPDLVPSLVLTNFTKSLYSDSLNDTKYTG 145

Query: 141 AGIGSEDNWIVVILTTSTPAGSYVPY--NAASLISNIGLIYCLLFWL 185
            GIGSEDNWIVV+LTT+TP+G++ PY  + A+LIS  GLIYC + +L
Sbjct: 146 IGIGSEDNWIVVVLTTNTPSGTFAPYSSDGANLISKPGLIYCSVLFL 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515277|gb|AFK45700.1| unknown [Lotus japonicus]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/202 (62%), Positives = 152/202 (75%), Gaps = 10/202 (4%)

Query: 1   MASPWLHL---LLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLA 57
           MAS  L L   L+L S L ++  VKCD DEED L QG+N YRESLNLTSLTKN+NA C A
Sbjct: 1   MASFHLSLVFGLVLCSILLLSPPVKCDHDEEDDLYQGINKYRESLNLTSLTKNENANCFA 60

Query: 58  DELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEH 117
           D++ADQFK QPCTN+TGANTVPGTE Q  NYP LL KC LN+SNTRDG VMPACVP L  
Sbjct: 61  DKIADQFKKQPCTNTTGANTVPGTEPQFDNYPKLLTKCKLNISNTRDGSVMPACVPGLVS 120

Query: 118 SLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPY-------NAAS 170
           ++VL+NFT+S YS +LND+KY G GIGSEDNWIVV+LTT T  GS+VP        + A+
Sbjct: 121 TVVLTNFTQSLYSQNLNDSKYAGIGIGSEDNWIVVVLTTDTSGGSFVPEAGSGSSDDTAN 180

Query: 171 LISNIGLIYCLLFWLISALLIF 192
           L+S IGL+YC +  L+ ++ +F
Sbjct: 181 LLSKIGLVYCSMLLLVGSVFLF 202

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722561|ref|NP_001238272.1| uncharacterized protein LOC100499681 precursor [Glycine max] gi|255625749|gb|ACU13219.1| unknown [Glycine max]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/177 (68%), Positives = 143/177 (80%), Gaps = 2/177 (1%)

Query: 18  NLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANT 77
           N  VKCD DEED L QG+N YR SLNL +LT+N NA CLA++LA+QFK QPCTN+TGANT
Sbjct: 23  NCPVKCDDDEEDNLYQGINKYRASLNLKALTRNDNANCLAEKLANQFKKQPCTNTTGANT 82

Query: 78  VPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTK 137
           VPGTE Q SNYPDLL+KC L +SNTRDG VMPACVP L  SLVL+NFTKS YSDSLNDTK
Sbjct: 83  VPGTEPQFSNYPDLLSKCDLAISNTRDGNVMPACVPGLVPSLVLANFTKSLYSDSLNDTK 142

Query: 138 YKGAGIGSEDNWIVVILTTSTPAGSYVPY--NAASLISNIGLIYCLLFWLISALLIF 192
           Y G GIGSEDNWIVV+LTT+TP+G++ PY  N  +LIS  GLIYC + +L+  +L+ 
Sbjct: 143 YTGIGIGSEDNWIVVVLTTNTPSGTFAPYSSNGVNLISKSGLIYCSVLFLVGYILLL 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515291|gb|AFK45707.1| unknown [Lotus japonicus]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/181 (65%), Positives = 145/181 (80%), Gaps = 2/181 (1%)

Query: 14  FLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNST 73
            L +N   +C  DE+D L QG+N YR S+NL +L KN+NA+CLAD++A+QFKNQPCTN+T
Sbjct: 19  ILLINYPTECADDEKDNLYQGINKYRASINLKALAKNENADCLADQIAEQFKNQPCTNTT 78

Query: 74  GANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSL 133
           GANTVPGTE Q SNYP+LLAKCHL +S+T+D  VMPACVPNL  SLVLSNFT S YSDSL
Sbjct: 79  GANTVPGTEPQFSNYPNLLAKCHLAISDTQDRTVMPACVPNLVPSLVLSNFTGSLYSDSL 138

Query: 134 NDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPY--NAASLISNIGLIYCLLFWLISALLI 191
           NDTKY G GIGSEDNWIVV+LTT+TPAG++ PY  N A+LIS +GLI+C +  L+  + +
Sbjct: 139 NDTKYTGIGIGSEDNWIVVVLTTNTPAGNFAPYSSNGANLISKMGLIHCSMLVLVGIVFL 198

Query: 192 F 192
            
Sbjct: 199 L 199

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552305|ref|XP_002517197.1| conserved hypothetical protein [Ricinus communis] gi|223543832|gb|EEF45360.1| conserved hypothetical protein [Ricinus communis]

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 135/153 (88%)

Query: 26  DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQL 85
           +EEDTLL+G+NSYR+SLNLT+LTKN+NAECLA+ELADQFKNQPCTN+TG+NTVPGTE+Q 
Sbjct: 5   NEEDTLLEGINSYRKSLNLTTLTKNENAECLAEELADQFKNQPCTNTTGSNTVPGTEQQF 64

Query: 86  SNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGS 145
            NY  LLAKCHLNVSNTRDG  MPACVPNL+ +LVL+NFT SQYS  LNDTKY GAGIGS
Sbjct: 65  HNYESLLAKCHLNVSNTRDGQAMPACVPNLDPTLVLANFTGSQYSSYLNDTKYTGAGIGS 124

Query: 146 EDNWIVVILTTSTPAGSYVPYNAASLISNIGLI 178
           + NWIV++LTTS P GS+V YNAASL   +G+I
Sbjct: 125 DGNWIVIVLTTSDPEGSFVTYNAASLTIKMGVI 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480763|ref|XP_003610667.1| GPI-anchored protein, putative [Medicago truncatula] gi|217071106|gb|ACJ83913.1| unknown [Medicago truncatula] gi|355512002|gb|AES93625.1| GPI-anchored protein, putative [Medicago truncatula] gi|388501396|gb|AFK38764.1| unknown [Medicago truncatula]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 143/193 (74%), Gaps = 8/193 (4%)

Query: 8   LLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQ 67
           L    S L  +  V CD DEED L QG+N YR SLNLTSLTKN+NA C A++LADQFKN+
Sbjct: 9   LFFFSSILLFSHSVHCDHDEEDDLYQGVNMYRTSLNLTSLTKNENANCFAEKLADQFKNK 68

Query: 68  PCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKS 127
           PCTN+TGANT+PGTE Q  NY DLL KCHLN+SNTRDG VMPACVP L  S+VLSNFT+S
Sbjct: 69  PCTNTTGANTIPGTEPQFPNYEDLLTKCHLNISNTRDGSVMPACVPGLVPSIVLSNFTQS 128

Query: 128 QYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPY--------NAASLISNIGLIY 179
            YS +LND+K+ G GIGSEDNWIVV+LTT+T  GS+VP         N  + I+ IGL+Y
Sbjct: 129 LYSQNLNDSKFTGIGIGSEDNWIVVVLTTNTSDGSFVPESSSGDETSNGENFITKIGLVY 188

Query: 180 CLLFWLISALLIF 192
           C L  L+  +++F
Sbjct: 189 CSLLLLVGNVILF 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504872|gb|AFK40502.1| unknown [Medicago truncatula]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 142/193 (73%), Gaps = 8/193 (4%)

Query: 8   LLLLVSFLSMNLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQ 67
           L    S L  +  V CD DEED L QG+N YR SLNLTSLTKN+NA C A++LADQFKN+
Sbjct: 9   LFFFSSILLFSHSVHCDHDEEDDLYQGVNMYRTSLNLTSLTKNENANCFAEKLADQFKNK 68

Query: 68  PCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKS 127
           PCTN+TGANT+PGTE Q  NY DLL KCHLN+SNTRDG VMPACVP L  S VLSNFT+S
Sbjct: 69  PCTNTTGANTIPGTEPQFPNYEDLLTKCHLNISNTRDGSVMPACVPGLVPSFVLSNFTQS 128

Query: 128 QYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSYVPY--------NAASLISNIGLIY 179
            YS +LND+K+ G GIGSEDNWIVV+LTT+T  GS+VP         N  + I+ IGL+Y
Sbjct: 129 LYSQNLNDSKFTGIGIGSEDNWIVVVLTTNTSDGSFVPESSSGDETSNGENFITKIGLVY 188

Query: 180 CLLFWLISALLIF 192
           C L  L+  +++F
Sbjct: 189 CSLLLLVGNVILF 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:505006331	200	AT3G06035 "AT3G06035" [Arabido	0.895	0.86	0.638	1.2e-56
TAIR|locus:2182162	196	AT5G19250 "AT5G19250" [Arabido	0.895	0.877	0.611	2.1e-52
TAIR|locus:2011025	200	AT1G54860 "AT1G54860" [Arabido	0.859	0.825	0.461	2.6e-38
TAIR|locus:2182152	199	AT5G19240 "AT5G19240" [Arabido	0.848	0.819	0.491	5.5e-38
TAIR|locus:2182142	189	AT5G19230 "AT5G19230" [Arabido	0.828	0.841	0.462	2.9e-32

TAIR|locus:505006331 AT3G06035 "AT3G06035" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 113/177 (63%), Positives = 136/177 (76%)

Query:    21 VKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPG 80
             V  DTDEED LL G+NSYR + NLT L+KN+NAECLADE+ADQFKN+PCTN TG+ TVPG
Sbjct:    22 VLSDTDEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSATVPG 81

Query:    81 TEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKG 140
             TE Q +NYP +LAKCHLNVS+TRDG +MPACVP LE +LVL+NFTKSQYS SLND+K+ G
Sbjct:    82 TEPQFANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTG 141

Query:   141 AGIGSEDNWIVVILTTSTPAGSYVPYNAASLISN-----IGLIYCLLFWLISALLIF 192
              GIG ED+WIVV+LTT+TP GSY         SN     IGL+  L+ ++ S+   F
Sbjct:   142 IGIGKEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGLVSYLVIFMYSSFCFF 198

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2182162 AT5G19250 "AT5G19250" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 107/175 (61%), Positives = 131/175 (74%)

Query:    21 VKCDT-DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVP 79
             V  DT DEED LL G+NSYR SLNLT+L  N NAECLADE+ADQFKNQPCTN+TG+ +VP
Sbjct:    22 VLSDTADEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASVP 81

Query:    80 GTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYK 139
             GT     N P+LL+KC LN + TRDG ++PACVPNL+ SLVL+NFT SQYS  LND+K+ 
Sbjct:    82 GTTPGFPNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFT 141

Query:   140 GAGIGSEDNWIVVILTTSTPAGSYVPY-NAASLISNI-GLIYCLLFWLISALLIF 192
             G GIGS+DNWIVV+LTTSTP GSY P  N+ +    + GL+   L +L+    +F
Sbjct:   142 GIGIGSDDNWIVVVLTTSTPEGSYSPASNSGAFAFGVNGLVSSSLMFLLFCFFMF 196

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2011025 AT1G54860 "AT1G54860" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 78/169 (46%), Positives = 121/169 (71%)

Query:    28 EDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTV-PGT-EKQL 85
             ED LLQGLNSYR +  +    KN+ A+C+ADE+AD+ ++QPCTN T A+TV PG+   +L
Sbjct:    32 EDNLLQGLNSYRTAQRVPPFAKNEKADCVADEIADKLEDQPCTNHTTASTVTPGSVPPRL 91

Query:    86 SNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGS 145
             +NY D+L++C ++ + TRDG+++P C+PN   +L L+N+T++ Y+  LND++Y GAG+GS
Sbjct:    92 TNYQDILSECKIDPNTTRDGLILPVCIPNRIPTLALTNYTQTGYARYLNDSRYVGAGVGS 151

Query:   146 EDNWIVVILTTSTPAGSYVPYNAASLISNIGLI--YCLLFWLISALLIF 192
             E  W+VV+LTTSTP GS+    AA   +++ ++    L+  L S L++F
Sbjct:   152 EKEWMVVVLTTSTPGGSFTAGVAAGKATSVRVMAGLGLMGLLFSCLVLF 200

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2182152 AT5G19240 "AT5G19240" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 82/167 (49%), Positives = 114/167 (68%)

Query:    21 VKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPG 80
             V  +TD E+ L    N YRES+NLT+L KNKNAECLADE+ DQ +NQPCTN+TG+ +VPG
Sbjct:    23 VLSNTDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVPG 82

Query:    81 TEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKG 140
             T+  + N+P+LLAKC LN + TRDG+++  C P    +  LS+F  +  + +LND+K+ G
Sbjct:    83 TDPGIPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSFA-NVLTKNLNDSKFTG 141

Query:   141 AGIG--SEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWL 185
             AG+G  S+  W+V +LTT+TP GSY    A +   N GL+   L +L
Sbjct:   142 AGVGIDSDGIWLVTVLTTNTPGGSYSNSGAFAFGVN-GLVSSSLMFL 187

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2182142 AT5G19230 "AT5G19230" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 80/173 (46%), Positives = 103/173 (59%)

Query:    25 TD-EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEK 83
             TD E+D LL   N YR  LNL +LTKN+NAECLADE+ DQ KNQPCTN+  +  VPG   
Sbjct:    26 TDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLADEVVDQLKNQPCTNTNNSAPVPGN-- 83

Query:    84 QLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGI 143
                   +LLAKC LN +  RDG++M  C P  + +  LSNF  S    +LND+K  G GI
Sbjct:    84 ------NLLAKCSLNTTVVRDGVIMQVCFPKHDKNPDLSNFN-SVVLKNLNDSKITGIGI 136

Query:   144 GSEDNWIVVILTTSTPAGSY---VPYNAASLISNI-GLIYCLLFWLISALLIF 192
             GS D W+VVILTT+TP G Y      N+ +    + GL+     +L+    +F
Sbjct:   137 GSGDIWVVVILTTNTPEGGYSLLTTTNSGAYAFGVNGLVSSSFLFLLFCFFMF 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       174   0.00075  109 3  11 23  0.45    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.92u 0.08s 19.00t   Elapsed:  00:00:01
  Total cpu time:  18.92u 0.08s 19.00t   Elapsed:  00:00:01
  Start:  Fri May 10 23:05:50 2013   End:  Fri May 10 23:05:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84MC0	UGPI4_ARATH	No assigned EC number	0.6333	0.9114	0.875	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.44.1 SubName- Full=Putative uncharacterized protein; (161 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
cd05379	122	SCP_bacterial SCP_bacterial: SCP-like extracellula	97.72
TIGR02909	127	spore_YkwD uncharacterized protein, YkwD family. M	97.27
PF00188	124	CAP: Cysteine-rich secretory protein family; Inter	90.69
cd05384	129	SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula	85.51
cd05381	136	SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula	85.2
cd00168	122	SCP SCP: SCP-like extracellular protein domain, fo	83.31
PF14412	109	AHH: A nuclease family of the HNH/ENDO VII superfa	81.43

>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

Probab=97.72  E-value=5.8e-05  Score=54.19  Aligned_cols=41  Identities=22%  Similarity=0.242  Sum_probs=36.6

Q ss_pred             hhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCC
Q 029481           29 DTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPC   69 (192)
Q Consensus        29 d~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpC   69 (192)
                      ..+++.||.||+..++|+|+.+++-.+.|.+-|++.....+
T Consensus         2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~   42 (122)
T cd05379           2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGY   42 (122)
T ss_pred             hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCc
Confidence            46899999999999999999999999999999998865555

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.

>TIGR02909 spore_YkwD uncharacterized protein, YkwD family

Probab=97.27  E-value=0.0011  Score=50.69  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=62.7

Q ss_pred             chhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhccccccccccCc
Q 029481           26 DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDG  105 (192)
Q Consensus        26 d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC~inin~T~DG  105 (192)
                      +.|+++|+-||.||+..+||+|+-|+.-.-.|++=|+++..+.--..    .-|.    .-..-+.+++..++-.  .-|
T Consensus         3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H----~~~~----~~~~~~r~~~~g~~~~--~~g   72 (127)
T TIGR02909         3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSH----TSPT----YGSPFDMMKKFGISYR--MAG   72 (127)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccc----cCCC----CCCHHHHHHHcCCCcc--cce
Confidence            56889999999999999999999999998888888877754322111    1121    1111244444433211  111


Q ss_pred             eeeecccCCCccchhhcccchh--hhhcccC-CCCcceeecc
Q 029481          106 IVMPACVPNLEHSLVLSNFTKS--QYSDSLN-DTKYKGAGIG  144 (192)
Q Consensus       106 ~imPvCVP~l~~~~vltNyT~S--qy~~yLN-dSkytg~GiG  144 (192)
                      -.+-.  -...+..++..+-+|  ++..-|+ +.+..|||+.
T Consensus        73 ENi~~--g~~~~~~~v~~W~~S~gH~~nil~~~~~~~Gvg~~  112 (127)
T TIGR02909        73 ENIAY--GNSTVEAVHNAWMNSPGHRANILNPNYTEIGVGYV  112 (127)
T ss_pred             eeeec--cCCCHHHHHHHHHcCHhHHHHHcCCCcCeEeEEEE
Confidence            11100  012344567777766  5666665 4566666664

Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.

>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins

Probab=90.69  E-value=0.069  Score=36.13  Aligned_cols=35  Identities=26%  Similarity=0.204  Sum_probs=25.7

Q ss_pred             Hhhhhhhh-hhcCCCccccCCCCcccHHHHHHHhCC
Q 029481           32 LQGLNSYR-ESLNLTSLTKNKNAECLADELADQFKN   66 (192)
Q Consensus        32 l~~iN~YR-~slnLp~L~kN~kA~ClA~eiA~~~~~   66 (192)
                      |+-+|.|| +..++|+|+-++...=.|++-|++...
T Consensus         1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~   36 (124)
T PF00188_consen    1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCAN   36 (124)
T ss_dssp             HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCS
T ss_pred             CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhh
Confidence            57899999 889999999887777677777777655

Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....

>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

Probab=85.51  E-value=0.58  Score=35.00  Aligned_cols=39  Identities=23%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             hhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhC
Q 029481           27 EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFK   65 (192)
Q Consensus        27 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~   65 (192)
                      -+..+|+.+|.||...++|+|+=|..-+=.|.+-|++..
T Consensus         2 ~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~   40 (129)
T cd05384           2 FASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYD   40 (129)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhc
Confidence            467899999999999999999999988888888888853

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.

>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

Probab=85.20  E-value=0.74  Score=34.75  Aligned_cols=45  Identities=18%  Similarity=0.288  Sum_probs=38.2

Q ss_pred             hhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCC
Q 029481           28 EDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNST   73 (192)
Q Consensus        28 Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt   73 (192)
                      |+++|+..|.||...++|+|+=++.-.=.|.+-|+++. +.|....
T Consensus         1 ~~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~-~~c~~~~   45 (136)
T cd05381           1 PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRR-GDCALVH   45 (136)
T ss_pred             ChHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhc-CCCCccc
Confidence            35799999999999999999999888888888888886 5786544

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

Probab=83.31  E-value=0.7  Score=34.04  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             hhHHhhhhhhhhhc-CCCccccCCCCcccHHHHHHHh
Q 029481           29 DTLLQGLNSYRESL-NLTSLTKNKNAECLADELADQF   64 (192)
Q Consensus        29 d~Ll~~iN~YR~sl-nLp~L~kN~kA~ClA~eiA~~~   64 (192)
                      +++|+-+|.||... ++++|.=+..-+=.|.+-|++.
T Consensus         2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c   38 (122)
T cd00168           2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRC   38 (122)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhc
Confidence            36899999999999 9999999988888888888774

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as

>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH

Probab=81.43  E-value=0.69  Score=34.47  Aligned_cols=57  Identities=11%  Similarity=0.275  Sum_probs=43.8

Q ss_pred             ccCCCCCC-CCCChhHhhhccccccccccCceeeecccCCCccchhhcccchhh-hhcccCC
Q 029481           76 NTVPGTEK-QLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQ-YSDSLND  135 (192)
Q Consensus        76 ~~vPg~~p-q~pnyp~~l~kC~inin~T~DG~imPvCVP~l~~~~vltNyT~Sq-y~~yLNd  135 (192)
                      ..||.... ..+...+.|+++.+++|...+|+.||..-.   +....++-.|+. |.+++++
T Consensus        20 HII~~~~~~~~~~~~~~l~~~g~~in~~~Ngv~Lp~~~~---~~~~~H~g~H~~~Y~~~V~~   78 (109)
T PF14412_consen   20 HIIPKNNFERSPKLRKILEKYGIDINDPENGVWLPNSEK---PGRPPHRGRHPNEYNKYVRE   78 (109)
T ss_pred             eecCccchhccHHHHHHHHHcCCCcCCccceeeeeccCC---CCcCCcCCCCcHHHHHHHHH
Confidence            35677765 667788999999999999999999997655   555666656665 8877754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
4ifa_A	339	Extracellular protein containing A SCP domain; vac	93.57
4h0a_A	323	Uncharacterized protein; CAP protein family, cyste	92.96
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	89.2

>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}

Probab=93.57  E-value=0.027  Score=49.84  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=66.1

Q ss_pred             hhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhccccccccccCce
Q 029481           27 EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGI  106 (192)
Q Consensus        27 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC~inin~T~DG~  106 (192)
                      .|.++|.-+|.||+..+||+|+-|+...-.|+.=|+++...-+-..++.   -|.     +..+.+++..+.......=+
T Consensus       220 ~e~~vl~lvN~~Ra~~Gl~pL~~d~~L~~aAq~hA~dMa~~~~fsH~~~---~G~-----~~~~R~~~~G~~~~~~GENI  291 (339)
T 4ifa_A          220 NMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSP---TLG-----TLGDRLQRGKVGFQLAGENI  291 (339)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCSSSBT---TTB-----CHHHHHHHTTCCCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHhhcCCeecCCC---CCC-----CHHHHHHHcCCCcCceeEEE
Confidence            4789999999999999999999999988888777776643322111111   011     22345554433211100000


Q ss_pred             eeecccCCCccchhhcccchh--hhhcccCCCCcceeeccCCCceEEEEEec
Q 029481          107 VMPACVPNLEHSLVLSNFTKS--QYSDSLNDTKYKGAGIGSEDNWIVVILTT  156 (192)
Q Consensus       107 imPvCVP~l~~~~vltNyT~S--qy~~yLNdSkytg~GiGsed~WmVvVLtT  156 (192)
                      -.  .  ...+..++..+-.|  +.+. |=+..|+-+|||-...|.+.++.+
T Consensus       292 A~--G--~~s~~~av~~WmnSpGHr~N-IL~~~~t~iGvGv~~~YwtQ~F~~  338 (339)
T 4ifa_A          292 AA--Q--HSDGVAALQGWLNSEGHRKN-LLNEQFTGLGVGVYDKFYTQNFIR  338 (339)
T ss_dssp             EE--S--CSSHHHHHHHHHTSHHHHHH-HTCTTCCEEEEEEETTEEEEEEEE
T ss_pred             EE--e--CCCHHHHHHHHhCCHhHHHH-HhCCCCCEEEEEEEecEEEEEEec
Confidence            00  0  01223344444445  4444 545678888888666666666653

>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}

Probab=92.96  E-value=0.044  Score=47.75  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             hhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhccccccccccCce
Q 029481           27 EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGI  106 (192)
Q Consensus        27 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC~inin~T~DG~  106 (192)
                      .|.++|+-||.||+..+||+|+-|+...-.|..=|++....--. .+    -|    .-.+..+.+++..+.-.....=+
T Consensus       205 ~e~~il~liN~~R~~~GL~pL~~d~~L~~aA~~ha~dma~~~~~-h~----~~----~g~~~~~R~~~~g~~~~~~gENI  275 (323)
T 4h0a_A          205 QLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSD-SV----EF----TEDALRGQLDKNHVTYKTTAQNV  275 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHTC-----------CC----CHHHHHHHHHHTTCCCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCcccCccHhHHHHHHHHHHHHhhCCCC-Cc----CC----CCCCHHHHHHHcCCCcCeeeeEE
Confidence            45689999999999999999999999988888888887432111 11    11    11123355555544321111100


Q ss_pred             eeecccCCCccchhhcccchh-hhhcccCCCCcceeeccCCCceEEEE
Q 029481          107 VMPACVPNLEHSLVLSNFTKS-QYSDSLNDTKYKGAGIGSEDNWIVVI  153 (192)
Q Consensus       107 imPvCVP~l~~~~vltNyT~S-qy~~yLNdSkytg~GiGsed~WmVvV  153 (192)
                      -+    =-..+..++..+-.| ...+.|=|.+|+-+|||-..+|.+-+
T Consensus       276 A~----g~~~~~~vv~~WmnSpgHR~NiL~~~~t~iGvGv~~~YwTQ~  319 (323)
T 4h0a_A          276 GY----AFNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLI  319 (323)
T ss_dssp             EE----SCCSHHHHHHHHHTSHHHHHHHTCSSCCEEEEEEETTEEEEE
T ss_pred             ec----CCCCHHHHHHHHHcCHHHHHHHcCCCCCEEEEEEEcCEEEEE
Confidence            00    001234455666566 24444556788888888655444433

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1

Probab=89.20  E-value=0.28  Score=36.59  Aligned_cols=47  Identities=15%  Similarity=0.192  Sum_probs=39.8

Q ss_pred             chhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCC
Q 029481           26 DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNST   73 (192)
Q Consensus        26 d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt   73 (192)
                      +.++++|+..|.||...++|+|+=++.-.=.|.+-|+++.+ -|...+
T Consensus         2 ~~~~~iL~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~a~-~c~~~h   48 (135)
T 1cfe_A            2 NSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAG-DCNLIH   48 (135)
T ss_dssp             CSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTT-TCCSCS
T ss_pred             cHHHHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHHHhc-CCCccc
Confidence            45778999999999999999999999988888899988753 476544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00