Citrus Sinensis ID: 029497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQKDDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccHHccccccccccccccccccccccccccEEEEEccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccHHHHHcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAASLATQSMLASPVAARVTGirrsganqlssvkylpslrrnvnlsvrctaedeqqqqqkddqptipkaepqppkkprmstgfsevfafsgpaperiNGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVplfkgvsvesksdgfmtsdAELWNGRFAMLGLVALAFTEFVKGGTLV
Flexible Loop (DISEMBL)
maaslatqsmlaspvaARVTgirrsganqlssvkylpslrrNVNLSVRCTAEDeqqqqqkddqptipkaepqppkkprmsTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV
Low Complexity Region (SEG)
MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAedeqqqqqkddqPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV
Disordered region (IsUnstruct)
**********************************YL*************************************************VFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG****
Disordered Region (DISOPRED)
********************************************************************************TGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV
Disordered Region (DISEMBL)
**************VAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRC******************************STGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV
Disordered Region (DISPRO)
*********************************KYLPSLRRNVNLSVRCTA*****************************TGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQKDDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
P11432	196	Early light-induced prote	N/A	no	0.864	0.846	0.638	7e-55
Q01931	199	Desiccation stress protei	N/A	no	0.963	0.929	0.460	1e-40
P14895	231	High molecular mass early	N/A	no	0.697	0.580	0.554	6e-34
P14897	172	Low molecular mass early	N/A	no	0.802	0.895	0.476	4e-33
P14896	167	Low molecular mass early	N/A	no	0.567	0.652	0.581	2e-29
P27516	172	Carotene biosynthesis-rel	N/A	no	0.515	0.575	0.514	6e-17

>sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1

 Score =  213 bits (542), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 115/180 (63%), Positives = 135/180 (75%), Gaps = 14/180 (7%)

Query: 24  RSGANQLSSVK--YLPSLRRNVNLSVRCTAEDEQQQQQK---------DDQPTIPKAEPQ 72
           RS  NQ +++   Y+P+LRRNV+L VR  AE E ++Q K            PT   A  +
Sbjct: 20  RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTR 79

Query: 73  PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWF 132
           PPK   MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWF
Sbjct: 80  PPK---MSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWF 136

Query: 133 LGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 192
           LGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct: 137 LGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196

Probably involved in the integration of pigments into the mature pigment-protein complexes.
Pisum sativum (taxid: 3888)

>sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 134/204 (65%), Gaps = 19/204 (9%)

Query: 1   MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAEDEQQQ 57
           MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR   ED +++
Sbjct: 1   MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKE 59

Query: 58  Q--------QKDDQPTIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVA 108
           +          D  P +       P +  ++T  + ++F+F G APERINGR AMIGFVA
Sbjct: 60  EQQQQKQQQTHDGGPDLT------PNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVA 113

Query: 109 ALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELW 168
           A+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+W
Sbjct: 114 AVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIW 173

Query: 169 NGRFAMLGLVALAFTEFVKGGTLV 192
           NGRFAM+GLVALAFTE+VKGG L+
Sbjct: 174 NGRFAMIGLVALAFTEYVKGGPLI 197

Possibly exerts a protective role during water loss.

Craterostigma plantagineum (taxid: 4153)

>sp|P14895|ELI5_HORVU High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1

 Score =  143 bits (361), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 94/137 (68%), Gaps = 3/137 (2%)

Query: 58  QQKDDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKG 117
           Q     PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G
Sbjct: 94  QYTSPSPTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARG 152

Query: 118 QDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAML 175
             +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAML
Sbjct: 153 GGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAML 212

Query: 176 GLVALAFTEFVKGGTLV 192
           GLVALA TEF+ G   V
Sbjct: 213 GLVALAATEFITGAPFV 229

Probably involved in the integration of pigments into the mature pigment-protein complexes.

Hordeum vulgare (taxid: 4513)

>sp|P14897|ELI9_HORVU Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 104/172 (60%), Gaps = 18/172 (10%)

Query: 22  IRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQKDDQPTIPKAEPQPPKKPRMST 81
           + RS A+   + + LP+L R   L VR   E           P+ P     PP KP+ ST
Sbjct: 16  VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKAST 58

Query: 82  GFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLT 140
              +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L+
Sbjct: 59  SIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLS 118

Query: 141 VASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 192
           +ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct: 119 MASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170

Probably involved in the integration of pigments into the mature pigment-protein complexes.

Hordeum vulgare (taxid: 4513)

>sp|P14896|ELI6_HORVU Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 80  STGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVL 138
           ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +
Sbjct: 52  STSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAM 111

Query: 139 LTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 188
           L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct: 112 LSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161

Probably involved in the integration of pigments into the mature pigment-protein complexes.

Hordeum vulgare (taxid: 4513)

>sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 66/107 (61%), Gaps = 8/107 (7%)

Query: 84  SEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVAS 143
           +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + AS
Sbjct: 68  TEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAAS 125

Query: 144 LVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 188
           L+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct: 126 LIPAFA----RRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168

Putative zeaxanthin binding protein. That forms photoprotective complexes within the light-harvesting antennae.

Dunaliella bardawil (taxid: 3045)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
380504946	208	ELIP, partial [Citrus sinensis]	0.989	0.913	1.0	1e-104
297835288	183	early light-inducable protein [Arabidops	0.953	1.0	0.648	7e-60
170522964	190	putative cold-inducible protein [Camelli	0.973	0.984	0.630	6e-59
38123375	194	ELIP [Brassica rapa subsp. pekinensis]	0.963	0.953	0.612	8e-56
224102113	182	early light-inducible protein [Populus t	0.947	1.0	0.588	1e-55
28194659	189	putative early light induced protein [Ar	0.958	0.973	0.619	1e-55
224163581	182	early light-inducible protein [Populus t	0.947	1.0	0.630	2e-55
259018355	175	putative early light induced protein 2 [	0.911	1.0	0.598	2e-55
224102115	182	early light-inducible protein [Populus t	0.947	1.0	0.614	3e-55
255627107	192	unknown [Glycine max]	0.958	0.958	0.609	3e-55

>gi|380504946|gb|AFD62760.1| ELIP, partial [Citrus sinensis]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQK 60
           MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQK
Sbjct: 19  MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQK 78

Query: 61  DDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV 120
           DDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV
Sbjct: 79  DDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV 138

Query: 121 FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL 180
           FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL
Sbjct: 139 FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL 198

Query: 181 AFTEFVKGGT 190
           AFTEFVKGGT
Sbjct: 199 AFTEFVKGGT 208

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835288|ref|XP_002885526.1| early light-inducable protein [Arabidopsis lyrata subsp. lyrata] gi|297331366|gb|EFH61785.1| early light-inducable protein [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 144/188 (76%), Gaps = 5/188 (2%)

Query: 5   LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQKDDQP 64
           +AT S     V A     R+   N+L      PSL+RN  + VRC AE E + +  D  P
Sbjct: 1   MATASFNMQSVFAGGLTTRKINGNKLFFAGTFPSLKRNYPVGVRCMAEGEPKNE--DSAP 58

Query: 65  TIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQL 124
           T   A P PP KP++ST FS++ AFSGPAPERINGRLAM+GFVAAL VE+SKG++VFAQ+
Sbjct: 59  T--SAAP-PPTKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVFAQI 115

Query: 125 SDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTE 184
           SDGGV+WFLGT+ +LT+ASLVPLFKG++ ESKSDG MTSDAELWNGRFAMLGLVALAFTE
Sbjct: 116 SDGGVSWFLGTTAILTLASLVPLFKGITAESKSDGIMTSDAELWNGRFAMLGLVALAFTE 175

Query: 185 FVKGGTLV 192
           FVKGGTLV
Sbjct: 176 FVKGGTLV 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170522964|gb|ACB20694.1| putative cold-inducible protein [Camellia sinensis] gi|259018359|gb|ACV89762.1| putative light-inducible protein [Camellia sinensis]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 149/192 (77%), Gaps = 5/192 (2%)

Query: 3   ASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQKDD 62
           A+ A QS+LA PV+  VT   R+  +Q +   Y+P L+RN  + VRC AED+Q +     
Sbjct: 2   ATPAMQSILARPVSG-VTA--RARFSQFTPCSYVPRLQRNAGMQVRCMAEDDQNKDVTPI 58

Query: 63  QPTIPKAEPQ--PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV 120
               P ++P   PP KP++ST FS+V AFSGPAPERINGRLAMIGFVAA+ VE+SKG+DV
Sbjct: 59  TTPPPTSQPISFPPPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAMAVELSKGEDV 118

Query: 121 FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL 180
            AQ+S+GGV WF GTS++LT+ASL+PLFKG SVES+S+G M+SDAELWNGRFAMLGLVAL
Sbjct: 119 LAQISNGGVPWFGGTSIVLTLASLIPLFKGGSVESRSEGIMSSDAELWNGRFAMLGLVAL 178

Query: 181 AFTEFVKGGTLV 192
           AFTEFVKGG LV
Sbjct: 179 AFTEFVKGGALV 190

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38123375|gb|AAR11456.1| ELIP [Brassica rapa subsp. pekinensis]

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 120/196 (61%), Positives = 144/196 (73%), Gaps = 11/196 (5%)

Query: 3   ASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAE---DEQQQQQ 59
           AS+  QS+ A  +A R     +   N+L      P+L+RN  + VRC AE   DE     
Sbjct: 4   ASVNMQSVFACGLATR-----KINTNKLFFAGNFPNLKRNYPVGVRCMAEGMKDESTPST 58

Query: 60  KDDQP---TIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISK 116
              QP   +     P PP KP++ST FS++ AFSGPAPERINGRLAM+GFVAAL VE+SK
Sbjct: 59  SAAQPLSSSSSPPPPPPPTKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSK 118

Query: 117 GQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLG 176
           G++V AQ+SDGGV+WFLGT+ +LT+ASLVPLFKG++ ESKS GFMTSDAELWNGRFAMLG
Sbjct: 119 GENVLAQISDGGVSWFLGTTAILTLASLVPLFKGITAESKSKGFMTSDAELWNGRFAMLG 178

Query: 177 LVALAFTEFVKGGTLV 192
           LVALAFTEFVKGGTLV
Sbjct: 179 LVALAFTEFVKGGTLV 194

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102113|ref|XP_002312551.1| early light-inducible protein [Populus trichocarpa] gi|222852371|gb|EEE89918.1| early light-inducible protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 146/192 (76%), Gaps = 10/192 (5%)

Query: 1   MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQK 60
           MA S   Q++LA+PV + +    RS  + L S  ++P LR + +  V+C+  D+Q ++  
Sbjct: 1   MATSTVMQTVLATPVPSGLVK-NRSRVSNLFSATFVPRLRGSASKRVQCSKLDDQIKKL- 58

Query: 61  DDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV 120
                   AEP    KP++S  F ++FAFSGPAPERINGRLAMIGFVAA+ VE+SKGQD+
Sbjct: 59  --------AEPSSTPKPKVSPKFLDLFAFSGPAPERINGRLAMIGFVAAMAVELSKGQDL 110

Query: 121 FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL 180
           F+Q+S+GGV+WF+GTS+LL+VASL+PLFKGVS ESKSDG MTSDAE+WNGRFAMLGLVAL
Sbjct: 111 FSQISNGGVSWFVGTSILLSVASLIPLFKGVSAESKSDGVMTSDAEMWNGRFAMLGLVAL 170

Query: 181 AFTEFVKGGTLV 192
           A TE+V GGTL+
Sbjct: 171 ACTEYVSGGTLL 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28194659|gb|AAO33591.1|AF479309_1 putative early light induced protein [Arachis hypogaea]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/189 (61%), Positives = 147/189 (77%), Gaps = 5/189 (2%)

Query: 3   ASLATQSMLASPVAARVTGIRRSGANQLS-SVKYLPSLRRNVNLSVRCTAEDEQQQQQKD 61
           +S A QS+LASP+    +   RS  NQ      Y+P++RRN +LSVR  AE+EQ++Q  +
Sbjct: 4   SSYAMQSILASPMTRTPS---RSRVNQFGVPALYMPNMRRNASLSVRSMAEEEQKEQSTE 60

Query: 62  DQPTIPKAEPQPPKKPR-MSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV 120
               +    P+P  +   MST FS+V AFSGPAPERINGRLAMIGFVAAL VE+S GQD+
Sbjct: 61  PTSPVTPPPPKPQPRSPKMSTKFSDVLAFSGPAPERINGRLAMIGFVAALAVELSNGQDL 120

Query: 121 FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL 180
            +Q+S+GG+ WFLGTSV+L++ASL+PLF+GVSVESKS GFM+SDAELWNGRFAMLGL+AL
Sbjct: 121 LSQISNGGIPWFLGTSVVLSLASLIPLFQGVSVESKSGGFMSSDAELWNGRFAMLGLIAL 180

Query: 181 AFTEFVKGG 189
           AFTE+VKGG
Sbjct: 181 AFTEYVKGG 189

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224163581|ref|XP_002338573.1| early light-inducible protein [Populus trichocarpa] gi|118488109|gb|ABK95874.1| unknown [Populus trichocarpa] gi|222872878|gb|EEF10009.1| early light-inducible protein [Populus trichocarpa]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 150/192 (78%), Gaps = 10/192 (5%)

Query: 1   MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQK 60
           MA S   Q++LASPVA+ +    RS  + L S  Y+P LR + +  ++C AE ++Q+   
Sbjct: 1   MATSTVMQTVLASPVASSLVK-NRSRVSNLFSATYVPRLRGSASKRLQCKAELDEQKMS- 58

Query: 61  DDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV 120
                   AEP PP KP++ST F++V AFSGPAPERINGRLAMIGFVAA+ VE+SKGQD+
Sbjct: 59  --------AEPSPPPKPKVSTKFADVLAFSGPAPERINGRLAMIGFVAAMAVELSKGQDL 110

Query: 121 FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL 180
           F+Q+S+GGV+WF+GTS+LL+VASLVPLFKGVS ESKSDG MTSDAE+WNGRFAMLGLVAL
Sbjct: 111 FSQISNGGVSWFVGTSILLSVASLVPLFKGVSAESKSDGVMTSDAEMWNGRFAMLGLVAL 170

Query: 181 AFTEFVKGGTLV 192
           AFTEFV G TL+
Sbjct: 171 AFTEFVSGRTLL 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259018355|gb|ACV89760.1| putative early light induced protein 2 [Camellia sinensis] gi|259018361|gb|ACV89763.1| putative early light induced protein 2 [Camellia sinensis]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 142/192 (73%), Gaps = 17/192 (8%)

Query: 1   MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQK 60
           MA S   QS+LA PV +  T   R+   Q +   Y+P L++N ++ VRC A    +  QK
Sbjct: 1   MATSATMQSVLARPVTSVTT---RARFGQFTPCSYVPYLQKNASMQVRCMA----KYGQK 53

Query: 61  DDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV 120
           +D            +KP++ST FS+V AFSGPAPERINGRLAMIGFVAA+ VE+S G+DV
Sbjct: 54  EDVT----------QKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAMAVELSNGEDV 103

Query: 121 FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL 180
             Q+S+GGV WF+GTS++LT+ASLVPLFKGVSVES+S+  M+SDAELWNGRFAMLGLVAL
Sbjct: 104 LVQISNGGVPWFVGTSIVLTLASLVPLFKGVSVESRSERIMSSDAELWNGRFAMLGLVAL 163

Query: 181 AFTEFVKGGTLV 192
           AFTEFVKGG LV
Sbjct: 164 AFTEFVKGGALV 175

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102115|ref|XP_002312552.1| early light-inducible protein [Populus trichocarpa] gi|222852372|gb|EEE89919.1| early light-inducible protein [Populus trichocarpa]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 151/192 (78%), Gaps = 10/192 (5%)

Query: 1   MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQK 60
           MA S   Q++LASPVA+ +    RS  + L S  Y+P LR + +  ++C AE ++Q+   
Sbjct: 1   MATSTVMQTVLASPVASSLVK-NRSRVSNLFSATYVPRLRGSASKRLQCKAELDEQKMS- 58

Query: 61  DDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV 120
                   AEP PP KP++ST F++V AFSGPAPERINGRLAMIGFVAA+ VE+SKGQD+
Sbjct: 59  --------AEPSPPPKPKVSTKFADVLAFSGPAPERINGRLAMIGFVAAMAVELSKGQDL 110

Query: 121 FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL 180
           F+Q+S+GGV+WF+GTS+LL+VASL+PLFKGVS ESKS+G MTSDAE+WNGRFAMLGLVAL
Sbjct: 111 FSQISNGGVSWFVGTSILLSVASLIPLFKGVSAESKSEGVMTSDAEMWNGRFAMLGLVAL 170

Query: 181 AFTEFVKGGTLV 192
           A+TE+V GGTL+
Sbjct: 171 AYTEYVSGGTLL 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255627107|gb|ACU13898.1| unknown [Glycine max]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 146/197 (74%), Gaps = 13/197 (6%)

Query: 2   AASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSL--RRNVNLSVRCTAEDEQQQQQ 59
           A+S A QS+LA+P+    +G R    NQ      +P+L  RRNV L VR  A++EQ  + 
Sbjct: 3   ASSYAMQSILANPLIRISSGSR---VNQFG----VPALHMRRNVGLRVRSMAKEEQPSEP 55

Query: 60  KDDQPTIPKAEP--QPPKKP--RMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEIS 115
                  P  EP  QP   P  ++ST FS+V AFSGPAPERINGRLAMIGFVAA+ VE++
Sbjct: 56  ATPVTPPPSVEPKPQPVSAPSSKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAMAVEVA 115

Query: 116 KGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAML 175
           KGQ V  Q+S+GG+ WFLGTSV+LT+ASL+PLF+GVSVESKS GFM+SDAELWNGRFAML
Sbjct: 116 KGQGVLEQISNGGIPWFLGTSVVLTLASLIPLFQGVSVESKSKGFMSSDAELWNGRFAML 175

Query: 176 GLVALAFTEFVKGGTLV 192
           GL+ALAFTE+VKG TLV
Sbjct: 176 GLIALAFTEYVKGSTLV 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2094354	195	ELIP1 "EARLY LIGHT-INDUCABLE P	0.979	0.964	0.610	1.8e-55
TAIR|locus:2130085	193	ELIP2 "EARLY LIGHT-INDUCIBLE P	0.942	0.937	0.557	1.2e-49

TAIR|locus:2094354 ELIP1 "EARLY LIGHT-INDUCABLE PROTEIN" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     5 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXP 64
             +AT S     V A     R+   N+L S    P+L+RN  + VRC A            P
Sbjct:     1 MATASFNMQSVFAGGLTTRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAP 60

Query:    65 T------IPKA-EPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKG 117
             +      +PK+  P PP KP++ST FS++ AFSGPAPERINGRLAM+GFVAAL VE+SKG
Sbjct:    61 STSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKG 120

Query:   118 QDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGL 177
             ++V AQ+SDGGV+WFLGT+ +LT+ASLVPLFKG+SVESKS G MTSDAELWNGRFAMLGL
Sbjct:   121 ENVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGL 180

Query:   178 VALAFTEFVKGGTLV 192
             VALAFTEFVKGGTLV
Sbjct:   181 VALAFTEFVKGGTLV 195

GO:0009507 "chloroplast" evidence=ISM

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009411 "response to UV" evidence=RCA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2130085 ELIP2 "EARLY LIGHT-INDUCIBLE PROTEIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 111/199 (55%), Positives = 136/199 (68%)

Query:     3 ASLATQSMLASPVAARVT-GIRRSGANQLSSVKYLPSLRRNVNLSVRCTAX--------X 53
             AS   QS+ A+P     T  IR +  NQL   +  P       + VRC A          
Sbjct:     4 ASFNMQSVFAAPSGVLTTRNIRNT--NQLFFKRIAP-------VGVRCMAQGDPIKEDPS 54

Query:    54 XXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVE 113
                       P +P++ P P  KP++ST F ++ AFSGPAPERINGRLAM+GFVAA+ +E
Sbjct:    55 VPSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAME 114

Query:   114 ISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFA 173
             +SKG++VFAQ+SDGGV WFLGT+ LLT+AS+VPLFKG+  E+KS GFMTSDAELWNGRFA
Sbjct:   115 LSKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFA 174

Query:   174 MLGLVALAFTEFVKGGTLV 192
             MLGLVALAFTE+V GGTLV
Sbjct:   175 MLGLVALAFTEYVTGGTLV 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       180   0.00092  109 3  11 22  0.41    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.55u 0.16s 15.71t   Elapsed:  00:00:01
  Total cpu time:  15.55u 0.16s 15.71t   Elapsed:  00:00:01
  Start:  Fri May 10 23:33:28 2013   End:  Fri May 10 23:33:29 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010224 "response to UV-B" evidence=IEP;RCA

GO:0009411 "response to UV" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P11432	ELI_PEA	No assigned EC number	0.6388	0.8645	0.8469	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_302736.1 annotation not avaliable (183 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	3e-08
PHA02337	35	PHA02337, PHA02337, putative high light inducible	4e-04

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 26/129 (20%), Positives = 37/129 (28%), Gaps = 40/129 (31%)

Query: 93  APERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWF-------------LGTSVLL 139
             E  +GR AM+  + AL  E+       A    G  AWF             L   +LL
Sbjct: 11  EAELKHGRWAMLAVLGALVPELLTKLGGVA----GEPAWFEAGGPLLPAIPTLLALQILL 66

Query: 140 TVASLVPLFKGVSVESKSDGF--------------MTSD---------AELWNGRFAMLG 176
            +  L             +G               +  D          E+ NGR AM+ 
Sbjct: 67  LMGFLELARWQGGKAPGGEGGDPGYPGGFGFDPLGLAKDPETFAELKLKEIKNGRLAMIA 126

Query: 177 LVALAFTEF 185
            +     E 
Sbjct: 127 FLGFFVQEL 135

Length = 135

>gnl|CDD|177361 PHA02337, PHA02337, putative high light inducible protein

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 92  PAPERINGRLAMIGFVAALGVEISKGQ 118
           P  E  NG LAMIGFVAA+G   + GQ
Sbjct: 3   PEAEIFNGWLAMIGFVAAVGAYATTGQ 29

Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.88
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.86
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.84
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.83
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.83
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	99.81
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.81
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.79
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.79
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.79
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.76
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.75
PLN00171	324	photosystem light-harvesting complex -chlorophyll	99.74
PLN00187	286	photosystem II light-harvesting complex II protein	99.74
PHA02337	35	putative high light inducible protein	99.28
PLN00014	250	light-harvesting-like protein 3; Provisional	99.01
PHA02337	35	putative high light inducible protein	98.98
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.53
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.52
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	98.44
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	98.43
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	98.4
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	98.37
PLN00014	250	light-harvesting-like protein 3; Provisional	98.35
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.33
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.31
PLN00187	286	photosystem II light-harvesting complex II protein	98.29
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.28
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	98.26
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.22
PLN00171	324	photosystem light-harvesting complex -chlorophyll	98.21
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.18
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	98.07
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	97.91

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.88  E-value=1.2e-22  Score=162.81  Aligned_cols=104  Identities=28%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             CCcccccCCCC-------CchHHHHHHHHHHHHHHHHHHHHHhCCch---------hhhhh---hh--hhHHHHHHHHHH
Q 029497           81 TGFSEVFAFSG-------PAPERINGRLAMIGFVAALGVEISKGQDV---------FAQLS---DG--GVAWFLGTSVLL  139 (192)
Q Consensus        81 ~~f~D~lgFsg-------~~aEliNGR~AMLGfvg~l~~E~~tg~~~---------~~Q~~---~~--g~~~fl~~~~ll  139 (192)
                      .| |||+||+.       +++|+||||+||||++++++.|+.++.+.         |.+..   ..  .+...+++++++
T Consensus        13 ~g-fDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ig~~   91 (156)
T PF00504_consen   13 YG-FDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAAGWAQILLFIGAL   91 (156)
T ss_dssp             TS-SSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSHHHHHHHHHHHHH
T ss_pred             CC-CChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhHHHHHHHHHHhHh
Confidence            45 99999984       58999999999999999999999976432         22211   11  111234455566


Q ss_pred             HHHhhhccccCC------CCCCCCC-----C--------CCChHHHHHHHHHHHHHHHHHHHHHH
Q 029497          140 TVASLVPLFKGV------SVESKSD-----G--------FMTSDAELWNGRFAMLGLVALAFTEF  185 (192)
Q Consensus       140 ~~asl~P~~~g~------~~e~~~~-----G--------~ft~~AEl~NGRlAMlG~~gl~~~E~  185 (192)
                      +..+....+...      ...+++.     |        .+++++|+||||||||||+++++||.
T Consensus        92 e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen   92 EPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             HHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            655443332110      1111111     1        24679999999999999999999984

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.86  E-value=4.2e-21  Score=163.42  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=74.4

Q ss_pred             CcccccCCCC---------CchHHHHHHHHHHHHHHHHHHHHHhCCchh-------------hhhhhhh-hHHHHHHHHH
Q 029497           82 GFSEVFAFSG---------PAPERINGRLAMIGFVAALGVEISKGQDVF-------------AQLSDGG-VAWFLGTSVL  138 (192)
Q Consensus        82 ~f~D~lgFsg---------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~-------------~Q~~~~g-~~~fl~~~~l  138 (192)
                      .+||||||+.         +++|++|||+||||++|.+++|..+..+..             +++...+ +.++++++++
T Consensus        57 ~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ig~  136 (209)
T PLN00089         57 KKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGF  136 (209)
T ss_pred             cCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHHHHH
Confidence            3699999974         269999999999999999999997644321             1111112 2344555666


Q ss_pred             HHHHhhhcc----ccCCCCCCCCCC--C--C----------ChHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497          139 LTVASLVPL----FKGVSVESKSDG--F--M----------TSDAELWNGRFAMLGLVALAFTEFVKGGTLV  192 (192)
Q Consensus       139 l~~asl~P~----~~g~~~e~~~~G--~--f----------t~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~  192 (192)
                      +++....+.    ..+ ...++++|  +  |          .+.+|++||||||+||+|+++||.+||++++
T Consensus       137 ~E~~~~~~~~~~~~~~-~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        137 VDLAVSAPAAAAAAEF-DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             HHHHHhhccccccccC-CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence            664322221    111 22344443  1  1          1367999999999999999999999999874

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.84  E-value=6.7e-21  Score=161.43  Aligned_cols=107  Identities=22%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             CCcccccCCCC----------CchHHHHHHHHHHHHHHHHHHHH-HhCCc--------h---------hhhhhhhhhHHH
Q 029497           81 TGFSEVFAFSG----------PAPERINGRLAMIGFVAALGVEI-SKGQD--------V---------FAQLSDGGVAWF  132 (192)
Q Consensus        81 ~~f~D~lgFsg----------~~aEliNGR~AMLGfvg~l~~E~-~tg~~--------~---------~~Q~~~~g~~~f  132 (192)
                      .|+|||+||+.          +++|++|||+||++++|.+++|+ .+-.+        +         +.++...++.++
T Consensus        44 ~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi  123 (202)
T PLN00120         44 LGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQI  123 (202)
T ss_pred             CCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHH
Confidence            47899999973          37999999999999999999996 22111        1         122333345555


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCC-------CCCCCC----------hHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 029497          133 LGTSVLLTVASLVPLFKGVSVESK-------SDGFMT----------SDAELWNGRFAMLGLVALAFTEFVKGG  189 (192)
Q Consensus       133 l~~~~ll~~asl~P~~~g~~~e~~-------~~G~ft----------~~AEl~NGRlAMlG~~gl~~~E~vTG~  189 (192)
                      +++++++++.... ...|....++       ++| |+          +.+||+|||||||||+|+++||+++|.
T Consensus       124 ~~~ig~~E~~~~~-~~~~~~~~pGd~~~g~~d~g-fdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        124 LAFIGFLELAVMK-DITGEGEFVGDFRNGYIDFG-WDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHHhhc-ccccCCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            6667777754432 1111111122       333 33          378999999999999999999999996

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.83  E-value=9.9e-21  Score=164.97  Aligned_cols=110  Identities=22%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh---hhhhhhh---------HHH-HHHHHHHHH
Q 029497           83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA---QLSDGGV---------AWF-LGTSVLLTV  141 (192)
Q Consensus        83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q~~~~g~---------~~f-l~~~~ll~~  141 (192)
                      -|||+||++        .++|++||||||||++|+++.|++++.+++.   ++..+..         .++ ++.++.+++
T Consensus        75 GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~  154 (250)
T PLN00101         75 GFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEI  154 (250)
T ss_pred             CCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHH
Confidence            599999975        2789999999999999999999999876542   2222211         111 122333333


Q ss_pred             Hhhhc-----------cccCCCCCCCC----CCCCC----------hHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497          142 ASLVP-----------LFKGVSVESKS----DGFMT----------SDAELWNGRFAMLGLVALAFTEFVKGGTLV  192 (192)
Q Consensus       142 asl~P-----------~~~g~~~e~~~----~G~ft----------~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~  192 (192)
                      .....           .|.+...++.+    .|.|+          +.||||||||||++++|+++|+++||++.+
T Consensus       155 ~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi  230 (250)
T PLN00101        155 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPF  230 (250)
T ss_pred             HHhhcccCCCcccccccccccccCCccccCCCCccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence            32211           11110111111    12232          479999999999999999999999999864

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.83  E-value=4.2e-20  Score=160.70  Aligned_cols=107  Identities=21%  Similarity=0.180  Sum_probs=68.1

Q ss_pred             ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh--hh-HHHHHHHHHHHHHhhhcccc--C
Q 029497           84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG--GV-AWFLGTSVLLTVASLVPLFK--G  150 (192)
Q Consensus        84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~--g~-~~fl~~~~ll~~asl~P~~~--g  150 (192)
                      |||+||+.        +++|++||||||+|++|.+++|+++..++++. ...  +. ...+..+.++ +..+++.++  +
T Consensus        58 FDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~a-g~~~~~~~~~~l~~iqil-l~g~~E~~r~~~  135 (246)
T PLN00100         58 FDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLPKFWEA-GAEKYGLDLQTLVLIQVV-VMAVLEAARYRG  135 (246)
T ss_pred             CCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcccchhhc-chhhhccchhHHHHHHHH-HHHHHhhhcccc
Confidence            99999974        27899999999999999999999764333321 110  00 0111122222 123333322  1


Q ss_pred             -----CCCCCCCCC--C--C----ChHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497          151 -----VSVESKSDG--F--M----TSDAELWNGRFAMLGLVALAFTEFVKGGTLV  192 (192)
Q Consensus       151 -----~~~e~~~~G--~--f----t~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~  192 (192)
                           +..++++++  +  |    .+.||++||||||+||+|+++|+.+||++++
T Consensus       136 ~~~~g~~~~pg~~~FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPl  190 (246)
T PLN00100        136 FMKTGESGVLSFFPFDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL  190 (246)
T ss_pred             cccccccCCCCCCCCCcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence                 111122222  1  1    2589999999999999999999999999864

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=99.81  E-value=2.1e-19  Score=157.96  Aligned_cols=115  Identities=17%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             CCCCCc-ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh---hhhhhhh---------HHH-HHH
Q 029497           78 RMSTGF-SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA---QLSDGGV---------AWF-LGT  135 (192)
Q Consensus        78 ~~~~~f-~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q~~~~g~---------~~f-l~~  135 (192)
                      ....++ |||||++.        +++|++||||||||++|++++|++++.+++.   ++..+..         .++ ++.
T Consensus        78 ~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~l  157 (267)
T PLN00098         78 SLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVL  157 (267)
T ss_pred             CCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHH
Confidence            333444 99999975        3899999999999999999999988765532   2221111         010 112


Q ss_pred             HHHHHHHhhhccc----cC-------------CCCCCCCCC--C--CC----------hHHHHHHHHHHHHHHHHHHHHH
Q 029497          136 SVLLTVASLVPLF----KG-------------VSVESKSDG--F--MT----------SDAELWNGRFAMLGLVALAFTE  184 (192)
Q Consensus       136 ~~ll~~asl~P~~----~g-------------~~~e~~~~G--~--ft----------~~AEl~NGRlAMlG~~gl~~~E  184 (192)
                      +++++..-+...+    .+             +...+++.+  +  |.          +.+|++||||||++++|+++|+
T Consensus       158 mG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~  237 (267)
T PLN00098        158 MGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA  237 (267)
T ss_pred             HHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            2333322111111    00             001122211  1  21          4699999999999999999999


Q ss_pred             HHhCCcCC
Q 029497          185 FVKGGTLV  192 (192)
Q Consensus       185 ~vTG~~l~  192 (192)
                      .+||++++
T Consensus       238 ~vTG~gPl  245 (267)
T PLN00098        238 VYTGEGPI  245 (267)
T ss_pred             hhcCCChH
Confidence            99999864

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.81  E-value=1.6e-19  Score=158.30  Aligned_cols=108  Identities=22%  Similarity=0.251  Sum_probs=68.6

Q ss_pred             ccccCCCC-------------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhh------hhhh-----------hhHHHH
Q 029497           84 SEVFAFSG-------------PAPERINGRLAMIGFVAALGVEISKGQDVFAQ------LSDG-----------GVAWFL  133 (192)
Q Consensus        84 ~D~lgFsg-------------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q------~~~~-----------g~~~fl  133 (192)
                      |||||++.             +++|++||||||||++|+++.|++++.+++.+      +..+           +....+
T Consensus        65 FDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l  144 (262)
T PLN00048         65 FDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTL  144 (262)
T ss_pred             CCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHH
Confidence            89999974             25799999999999999999999986655421      1111           001111


Q ss_pred             HHHHHHHHHhhhccccCCC-------------------------CCCCCCC--C--C---------ChHHHHHHHHHHHH
Q 029497          134 GTSVLLTVASLVPLFKGVS-------------------------VESKSDG--F--M---------TSDAELWNGRFAML  175 (192)
Q Consensus       134 ~~~~ll~~asl~P~~~g~~-------------------------~e~~~~G--~--f---------t~~AEl~NGRlAMl  175 (192)
                      +.+ .+.++.+++.++...                         ..+++.+  +  |         .+.+|++||||||+
T Consensus       145 ~~~-~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~  223 (262)
T PLN00048        145 FVL-EMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAML  223 (262)
T ss_pred             HHH-HHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHH
Confidence            111 122333344332110                         0111111  1  1         14799999999999


Q ss_pred             HHHHHHHHHHHhCCcCC
Q 029497          176 GLVALAFTEFVKGGTLV  192 (192)
Q Consensus       176 G~~gl~~~E~vTG~~l~  192 (192)
                      +++|+++|+++||++.+
T Consensus       224 A~~G~~~q~~~tg~gp~  240 (262)
T PLN00048        224 AILGYFIQALVTGVGPF  240 (262)
T ss_pred             HhhhHhhhhhhcCCCHH
Confidence            99999999999999863

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.79  E-value=3e-19  Score=155.28  Aligned_cols=109  Identities=16%  Similarity=0.234  Sum_probs=68.8

Q ss_pred             ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchh---hhhhhhh----------hHHH-HHHHHHHHH
Q 029497           84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVF---AQLSDGG----------VAWF-LGTSVLLTV  141 (192)
Q Consensus        84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~---~Q~~~~g----------~~~f-l~~~~ll~~  141 (192)
                      |||+||+.        .++|++||||||||++|+++.|++++.++.   .++..+.          +.++ ++.++.++.
T Consensus        67 fDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~  146 (244)
T PLN00097         67 FDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQMAMFNWAEI  146 (244)
T ss_pred             CCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHHHHHHHHHHH
Confidence            89999975        379999999999999999999999876542   1222111          1111 111223333


Q ss_pred             Hhhhcccc-C---C--------CCCCCC----CCCCC--------------hHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Q 029497          142 ASLVPLFK-G---V--------SVESKS----DGFMT--------------SDAELWNGRFAMLGLVALAFTEFVKGGTL  191 (192)
Q Consensus       142 asl~P~~~-g---~--------~~e~~~----~G~ft--------------~~AEl~NGRlAMlG~~gl~~~E~vTG~~l  191 (192)
                      ..+.-.++ |   .        ..++.+    .|.|+              +.+|+|||||||++++|+++|+.+||+++
T Consensus       147 ~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGP  226 (244)
T PLN00097        147 RRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGP  226 (244)
T ss_pred             HHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCH
Confidence            22211111 1   0        011111    11222              46999999999999999999999999986


Q ss_pred             C
Q 029497          192 V  192 (192)
Q Consensus       192 ~  192 (192)
                      +
T Consensus       227 l  227 (244)
T PLN00097        227 V  227 (244)
T ss_pred             H
Confidence            4

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.79  E-value=6.8e-19  Score=152.96  Aligned_cols=109  Identities=17%  Similarity=0.117  Sum_probs=65.3

Q ss_pred             cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhh-----hhhh-------hhH----HHHHHHHH
Q 029497           83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFAQ-----LSDG-------GVA----WFLGTSVL  138 (192)
Q Consensus        83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q-----~~~~-------g~~----~fl~~~~l  138 (192)
                      -|||++++.        +++|++||||||||++|++++|+++...+++-     +..+       .+.    ..+..+.+
T Consensus        66 GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqv  145 (243)
T PLN00099         66 GFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEF  145 (243)
T ss_pred             CCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHH
Confidence            499999975        26899999999999999999999754222210     0000       010    01111222


Q ss_pred             HHHHhhhcccc----C--CCCCCCC-CCC--CC---------hHHHHHHHHHHHHHHHHHHHHH-HHhCCcCC
Q 029497          139 LTVASLVPLFK----G--VSVESKS-DGF--MT---------SDAELWNGRFAMLGLVALAFTE-FVKGGTLV  192 (192)
Q Consensus       139 l~~asl~P~~~----g--~~~e~~~-~G~--ft---------~~AEl~NGRlAMlG~~gl~~~E-~vTG~~l~  192 (192)
                      + +..+++.++    +  ....+++ +.+  |.         +.+|||||||||+||+|+++|| .+||++++
T Consensus       146 l-~ig~~E~~r~~~~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl  217 (243)
T PLN00099        146 L-AIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL  217 (243)
T ss_pred             H-HHHHHHHHhhccCCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence            2 122222211    1  0111221 111  21         4689999999999999999999 56898864

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.79  E-value=9.8e-19  Score=152.65  Aligned_cols=109  Identities=15%  Similarity=0.169  Sum_probs=68.2

Q ss_pred             ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCch-----hhhhhh-------hh-hHH-HHHHHHHHHH
Q 029497           84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDV-----FAQLSD-------GG-VAW-FLGTSVLLTV  141 (192)
Q Consensus        84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~-----~~Q~~~-------~g-~~~-fl~~~~ll~~  141 (192)
                      ||||||+.        +++|++|||+||||++|.+++|+++..++     |.....       .+ ..+ -++++++++.
T Consensus        68 FDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~  147 (252)
T PLN00147         68 FDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAET  147 (252)
T ss_pred             CCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHH
Confidence            89999975        37899999999999999999999876543     211110       00 111 1223344443


Q ss_pred             Hhhhcc-----------ccCC-----CC---CCCCCC--C--CC---------hHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 029497          142 ASLVPL-----------FKGV-----SV---ESKSDG--F--MT---------SDAELWNGRFAMLGLVALAFTEFVKGG  189 (192)
Q Consensus       142 asl~P~-----------~~g~-----~~---e~~~~G--~--ft---------~~AEl~NGRlAMlG~~gl~~~E~vTG~  189 (192)
                      ....-+           |.|.     ..   .+++.+  +  +.         +.+|++||||||+|++|+++||.+||+
T Consensus       148 ~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~  227 (252)
T PLN00147        148 KRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHT  227 (252)
T ss_pred             HhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence            221100           0000     00   112111  1  11         468999999999999999999999999


Q ss_pred             cCC
Q 029497          190 TLV  192 (192)
Q Consensus       190 ~l~  192 (192)
                      +++
T Consensus       228 Gp~  230 (252)
T PLN00147        228 GPI  230 (252)
T ss_pred             ChH
Confidence            863

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.76  E-value=2.1e-18  Score=151.30  Aligned_cols=108  Identities=21%  Similarity=0.312  Sum_probs=67.7

Q ss_pred             ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCch------hh----hh-hhhhh------------H-H
Q 029497           84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDV------FA----QL-SDGGV------------A-W  131 (192)
Q Consensus        84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~------~~----Q~-~~~g~------------~-~  131 (192)
                      |||||++.        +++|++||||||||++|+++.|++++.++      |.    |+ ..+++            . +
T Consensus        76 fDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~  155 (262)
T PLN00025         76 WDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSIL  155 (262)
T ss_pred             CCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHH
Confidence            99999975        27899999999999999999999875543      11    11 00111            0 0


Q ss_pred             HHHHHHHHHHHhhhcccc--C----C--C-CCCCC-CCC--C---------ChHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 029497          132 FLGTSVLLTVASLVPLFK--G----V--S-VESKS-DGF--M---------TSDAELWNGRFAMLGLVALAFTEFVKGGT  190 (192)
Q Consensus       132 fl~~~~ll~~asl~P~~~--g----~--~-~e~~~-~G~--f---------t~~AEl~NGRlAMlG~~gl~~~E~vTG~~  190 (192)
                      .++.+.++ ++.+++.++  +    +  + ..+++ +.+  +         .+.+|++||||||++++|+++|+++||++
T Consensus       156 a~~~~qv~-lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~G  234 (262)
T PLN00025        156 AIWACQVV-LMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG  234 (262)
T ss_pred             HHHHHHHH-HHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCC
Confidence            01111111 223333332  1    1  1 11211 111  1         15789999999999999999999999998


Q ss_pred             CC
Q 029497          191 LV  192 (192)
Q Consensus       191 l~  192 (192)
                      ++
T Consensus       235 Pl  236 (262)
T PLN00025        235 PL  236 (262)
T ss_pred             hH
Confidence            64

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.75  E-value=1.2e-17  Score=146.09  Aligned_cols=40  Identities=23%  Similarity=0.205  Sum_probs=34.6

Q ss_pred             cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 029497           83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA  122 (192)
Q Consensus        83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~  122 (192)
                      -|||+|++.        .+.|++||||||||++|+++.|+++|..+++
T Consensus        79 GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~  126 (255)
T PLN00170         79 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE  126 (255)
T ss_pred             CcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence            399999974        2689999999999999999999998876554

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=99.74  E-value=5.4e-18  Score=152.22  Aligned_cols=109  Identities=15%  Similarity=0.075  Sum_probs=66.7

Q ss_pred             ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh-------hhh-------------hhhh----HH
Q 029497           84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA-------QLS-------------DGGV----AW  131 (192)
Q Consensus        84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~-------Q~~-------------~~g~----~~  131 (192)
                      ||||||+.        +++|++||||||||++|++++|+++..+...       ...             ..++    ..
T Consensus       133 FDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q  212 (324)
T PLN00171        133 FDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQ  212 (324)
T ss_pred             CCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhH
Confidence            89999975        3799999999999999999999976443211       001             0110    01


Q ss_pred             HHHHHHHHHHHh--hhccc--cCC-------CCCCCCCC----C-CC--------------hHHHHHHHHHHHHHHHHHH
Q 029497          132 FLGTSVLLTVAS--LVPLF--KGV-------SVESKSDG----F-MT--------------SDAELWNGRFAMLGLVALA  181 (192)
Q Consensus       132 fl~~~~ll~~as--l~P~~--~g~-------~~e~~~~G----~-ft--------------~~AEl~NGRlAMlG~~gl~  181 (192)
                      .+.++.++.+..  ..+..  .+.       .+.+++.+    . |+              +.+|++||||||+|++|++
T Consensus       213 ~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~  292 (324)
T PLN00171        213 GVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFY  292 (324)
T ss_pred             HHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            122222222221  11211  110       11122211    1 22              3579999999999999999


Q ss_pred             HHHHHhCCcCC
Q 029497          182 FTEFVKGGTLV  192 (192)
Q Consensus       182 ~~E~vTG~~l~  192 (192)
                      +|+.+||++++
T Consensus       293 vq~~vTG~GPl  303 (324)
T PLN00171        293 IQAAVTGKGPV  303 (324)
T ss_pred             HhHhhcCCChH
Confidence            99999999864

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=99.74  E-value=4.9e-18  Score=150.52  Aligned_cols=98  Identities=23%  Similarity=0.265  Sum_probs=62.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh-----h----h--hH---HHHHHHHHHHHHhhhccccCCCCC----
Q 029497           93 APERINGRLAMIGFVAALGVEISKGQDVFAQLSD-----G----G--VA---WFLGTSVLLTVASLVPLFKGVSVE----  154 (192)
Q Consensus        93 ~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~-----~----g--~~---~fl~~~~ll~~asl~P~~~g~~~e----  154 (192)
                      ++|++||||||||++|++++|+++|..++. .+.     +    +  ..   ..++.+.++ ++.+++.+++...+    
T Consensus       135 EaELiHGRwAMLAvaG~lvpEll~G~~W~~-aG~~~~~~g~~y~g~~~p~~~~~l~~iqvl-lmG~~E~~R~~~~~~~~~  212 (286)
T PLN00187        135 ECELIHGRWAMLATLGALSVEALTGVTWQD-AGKVELVDGSSYLGQPLPFSITTLIWIEVL-VIGYIEFQRNAELDPEKR  212 (286)
T ss_pred             HHHhhhhHHHHHHhhchhhHHhccCCcccc-cccccccccccccccccchhHHHHHHHHHH-HHHHHHhhhccCCCCCCC
Confidence            679999999999999999999987654321 111     0    0  00   112222222 34444554422111    


Q ss_pred             --CCCCC--C--C---------ChHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497          155 --SKSDG--F--M---------TSDAELWNGRFAMLGLVALAFTEFVKGGTLV  192 (192)
Q Consensus       155 --~~~~G--~--f---------t~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~  192 (192)
                        +++.+  +  |         .+.+|++||||||++++|+++|+.+||++.+
T Consensus       213 ~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi  265 (286)
T PLN00187        213 LYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL  265 (286)
T ss_pred             CCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence              11111  1  1         1468999999999999999999999998763

>PHA02337 putative high light inducible protein

Probab=99.28  E-value=4.2e-12  Score=80.79  Aligned_cols=31  Identities=39%  Similarity=0.583  Sum_probs=29.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Q 029497          161 MTSDAELWNGRFAMLGLVALAFTEFVKGGTL  191 (192)
Q Consensus       161 ft~~AEl~NGRlAMlG~~gl~~~E~vTG~~l  191 (192)
                      |++.+|+||||+|||||+..+..|+.||+++
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~i   31 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQII   31 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence            6889999999999999999999999999976

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=99.01  E-value=3.6e-10  Score=98.14  Aligned_cols=49  Identities=31%  Similarity=0.428  Sum_probs=40.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh--hhHHHHHHHHHH
Q 029497           91 GPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG--GVAWFLGTSVLL  139 (192)
Q Consensus        91 g~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~--g~~~fl~~~~ll  139 (192)
                      .+++|++|||+||+||+.++++|+++|+++++|+++.  ++.+|+.+++++
T Consensus       159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~v~gvl  209 (250)
T PLN00014        159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVTVAGVL  209 (250)
T ss_pred             CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHHHHHhe
Confidence            3589999999999999999999999999999999874  455555554443

>PHA02337 putative high light inducible protein

Probab=98.98  E-value=5.1e-10  Score=71.26  Aligned_cols=30  Identities=53%  Similarity=0.742  Sum_probs=27.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 029497           92 PAPERINGRLAMIGFVAALGVEISKGQDVF  121 (192)
Q Consensus        92 ~~aEliNGR~AMLGfvg~l~~E~~tg~~~~  121 (192)
                      +.+|++|||+||+||+.++..|+.||+++.
T Consensus         3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip   32 (35)
T PHA02337          3 PEAEIFNGWLAMIGFVAAVGAYATTGQIIP   32 (35)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence            479999999999999999999999999763

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.53  E-value=4.1e-08  Score=86.14  Aligned_cols=47  Identities=28%  Similarity=0.409  Sum_probs=41.0

Q ss_pred             CCCcccccCCCC----CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           80 STGFSEVFAFSG----PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        80 ~~~f~D~lgFsg----~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      ..|.||||||+.    ...|++|||+||++++|.+++++.||++.++++..
T Consensus       185 PGG~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~  235 (250)
T PLN00101        185 PGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQ  235 (250)
T ss_pred             CCCccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHH
Confidence            456799999974    25899999999999999999999999998887754

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.52  E-value=1e-07  Score=83.75  Aligned_cols=49  Identities=18%  Similarity=0.163  Sum_probs=41.0

Q ss_pred             CCCCc-ccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh
Q 029497           79 MSTGF-SEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSDG  127 (192)
Q Consensus        79 ~~~~f-~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~  127 (192)
                      ...++ |||||+...        ..|++|||+||+|++|.+++|+.+|++.++++...
T Consensus       179 yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~h  236 (252)
T PLN00147        179 YPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTH  236 (252)
T ss_pred             CcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            33444 999999752        57999999999999999999999999988877553

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=98.44  E-value=1.7e-07  Score=82.00  Aligned_cols=48  Identities=27%  Similarity=0.445  Sum_probs=41.8

Q ss_pred             CCCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           79 MSTGFSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        79 ~~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      ...|.||||||.+.        ..|++|||+||++++|.+++++.||++.++++..
T Consensus       177 YPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~  232 (244)
T PLN00097        177 YPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFS  232 (244)
T ss_pred             CCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence            45578999999752        5899999999999999999999999998887754

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=98.43  E-value=2.1e-07  Score=82.23  Aligned_cols=48  Identities=25%  Similarity=0.356  Sum_probs=41.7

Q ss_pred             CCCCcccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           79 MSTGFSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        79 ~~~~f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      ...++|||||+..        ...|++|||+||++++|.+++|+.||++.++++..
T Consensus       186 yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~  241 (262)
T PLN00025        186 YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD  241 (262)
T ss_pred             CCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence            4557799999975        26899999999999999999999999998887754

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=98.40  E-value=1.4e-07  Score=82.62  Aligned_cols=43  Identities=23%  Similarity=0.334  Sum_probs=38.6

Q ss_pred             ccccCCCC---CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           84 SEVFAFSG---PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        84 ~D~lgFsg---~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      ||||||+.   ...|++|||+||+||+|.+++++.+|++.++++..
T Consensus       150 FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~  195 (246)
T PLN00100        150 FDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA  195 (246)
T ss_pred             CCcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence            99999974   36899999999999999999999999998877654

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=98.37  E-value=4.7e-07  Score=79.24  Aligned_cols=47  Identities=26%  Similarity=0.351  Sum_probs=39.2

Q ss_pred             CCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHH-HHhCCchhhhhhh
Q 029497           80 STGFSEVFAFSGP--------APERINGRLAMIGFVAALGVE-ISKGQDVFAQLSD  126 (192)
Q Consensus        80 ~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E-~~tg~~~~~Q~~~  126 (192)
                      ..+.||||||+..        ..|++|||+||+|++|.+++| ..+|++.++++..
T Consensus       167 PGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~  222 (243)
T PLN00099        167 PGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT  222 (243)
T ss_pred             CCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHH
Confidence            3457999999742        579999999999999999999 4689998887754

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=98.35  E-value=2.3e-07  Score=80.82  Aligned_cols=30  Identities=40%  Similarity=0.575  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497          163 SDAELWNGRFAMLGLVALAFTEFVKGGTLV  192 (192)
Q Consensus       163 ~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~  192 (192)
                      +.+|++|||+|||||+..++.|++||.+++
T Consensus       160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll  189 (250)
T PLN00014        160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV  189 (250)
T ss_pred             chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence            579999999999999999999999999874

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.33  E-value=4.2e-07  Score=80.50  Aligned_cols=47  Identities=26%  Similarity=0.352  Sum_probs=40.2

Q ss_pred             CCCc-ccccCCCC---------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           80 STGF-SEVFAFSG---------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        80 ~~~f-~D~lgFsg---------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      ..++ |||+|+..         ...|++|||+||++++|.+++++.||++.++++..
T Consensus       194 PGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~  250 (267)
T PLN00098        194 PGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMA  250 (267)
T ss_pred             CCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHH
Confidence            4455 99999953         14899999999999999999999999999888754

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.31  E-value=4.1e-07  Score=80.39  Aligned_cols=44  Identities=30%  Similarity=0.416  Sum_probs=38.9

Q ss_pred             cccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           83 FSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        83 f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      +|||+|+...        ..|++|||+||++++|.+++|+.+|++.++++..
T Consensus       194 ~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~  245 (262)
T PLN00048        194 FFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLD  245 (262)
T ss_pred             ccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHH
Confidence            5999999752        5899999999999999999999999998877654

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=98.29  E-value=6.1e-07  Score=80.19  Aligned_cols=44  Identities=18%  Similarity=0.305  Sum_probs=38.7

Q ss_pred             cccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           83 FSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        83 f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      +||||||+..        ..|++|||+||+|++|.+++++.+|.+.++++..
T Consensus       219 ~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~  270 (286)
T PLN00187        219 FFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT  270 (286)
T ss_pred             cccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            5999999752        5799999999999999999999999988777654

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.28  E-value=4.6e-07  Score=76.38  Aligned_cols=31  Identities=35%  Similarity=0.459  Sum_probs=28.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHh-CCcCC
Q 029497          162 TSDAELWNGRFAMLGLVALAFTEFVK-GGTLV  192 (192)
Q Consensus       162 t~~AEl~NGRlAMlG~~gl~~~E~vT-G~~l~  192 (192)
                      ++..|+||||+||+||+..++.|++| |+|++
T Consensus       135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL  166 (214)
T PLN00084        135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL  166 (214)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence            35789999999999999999999999 88864

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=98.26  E-value=8.3e-07  Score=76.05  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             ccccCCCCC---------chHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 029497           84 SEVFAFSGP---------APERINGRLAMIGFVAALGVEISKGQDVF  121 (192)
Q Consensus        84 ~D~lgFsg~---------~aEliNGR~AMLGfvg~l~~E~~tg~~~~  121 (192)
                      |||+|+.+.         ..|++|||+||+|+.|.++.|+++|+++.
T Consensus       161 fdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        161 FDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             ccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence            899999531         46999999999999999999999998864

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.22  E-value=1.8e-06  Score=72.82  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=33.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHh-CCchhhhhhhh
Q 029497           92 PAPERINGRLAMIGFVAALGVEISK-GQDVFAQLSDG  127 (192)
Q Consensus        92 ~~aEliNGR~AMLGfvg~l~~E~~t-g~~~~~Q~~~~  127 (192)
                      ..-|++|||+||+||+.+++.|++| |+++++|+...
T Consensus       136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~E  172 (214)
T PLN00084        136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGE  172 (214)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccc
Confidence            3689999999999999999999999 99999998764

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=98.21  E-value=1.3e-06  Score=79.29  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             cccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           83 FSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        83 f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      .|||+||+..        ..|++|||+||+|++|.+++|+.||++.++++..
T Consensus       257 ~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~  308 (324)
T PLN00171        257 LFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD  308 (324)
T ss_pred             CCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence            3999999742        4699999999999999999999999998877654

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.18  E-value=7.4e-07  Score=71.50  Aligned_cols=30  Identities=37%  Similarity=0.369  Sum_probs=27.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 029497          161 MTSDAELWNGRFAMLGLVALAFTEFVKGGT  190 (192)
Q Consensus       161 ft~~AEl~NGRlAMlG~~gl~~~E~vTG~~  190 (192)
                      |.+.+|++|||+||+|++|.+++|+.++.+
T Consensus        28 ~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~   57 (156)
T PF00504_consen   28 WYREAELKHGRVAMLAFVGALVQEAGTGFP   57 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred             HHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence            568999999999999999999999988753

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=98.07  E-value=1.7e-06  Score=76.25  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             cccccCCCC-----------------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhh
Q 029497           83 FSEVFAFSG-----------------PAPERINGRLAMIGFVAALGVEISKGQDVFAQL  124 (192)
Q Consensus        83 f~D~lgFsg-----------------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~  124 (192)
                      +||||||.+                 +..|++|||+||++++|.+++- .+|++-++++
T Consensus       196 ~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l  253 (255)
T PLN00170        196 FFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL  253 (255)
T ss_pred             ccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhh
Confidence            799999974                 2689999999999999988766 7888876654

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=97.91  E-value=1.4e-05  Score=68.16  Aligned_cols=26  Identities=31%  Similarity=0.234  Sum_probs=24.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCC
Q 029497           93 APERINGRLAMIGFVAALGVEISKGQ  118 (192)
Q Consensus        93 ~aEliNGR~AMLGfvg~l~~E~~tg~  118 (192)
                      ..|++|||+||+|+.|.++.|.++|.
T Consensus       170 ~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        170 AIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            57999999999999999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.81
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.78
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	99.77
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.75
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.75
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.67
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.72
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.69
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.45
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.44
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	98.43
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.23

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.81  E-value=1.3e-19  Score=154.97  Aligned_cols=112  Identities=20%  Similarity=0.146  Sum_probs=67.1

Q ss_pred             CCcccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCc------hhh----hh-hhh-------h------
Q 029497           81 TGFSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQD------VFA----QL-SDG-------G------  128 (192)
Q Consensus        81 ~~f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~------~~~----Q~-~~~-------g------  128 (192)
                      ...|||+||+.        +++|++||||||||++|+++.|+++..+      .|.    +. .+.       +      
T Consensus        43 D~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q  122 (232)
T 2bhw_A           43 DYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ  122 (232)
T ss_dssp             CCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEEC
T ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcchhhHH
Confidence            34699999985        3899999999999999999999976322      121    11 000       0      


Q ss_pred             hHHHHHH-----HHHHHHHhhhc--ccc-CCCCCCCC-CCC--C---------ChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 029497          129 VAWFLGT-----SVLLTVASLVP--LFK-GVSVESKS-DGF--M---------TSDAELWNGRFAMLGLVALAFTEFVKG  188 (192)
Q Consensus       129 ~~~fl~~-----~~ll~~asl~P--~~~-g~~~e~~~-~G~--f---------t~~AEl~NGRlAMlG~~gl~~~E~vTG  188 (192)
                      ...++.+     ++.++.....-  .-. .+...+++ +.+  |         .+.+|++||||||+||+|+++||.+||
T Consensus       123 ~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg  202 (232)
T 2bhw_A          123 SILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG  202 (232)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcC
Confidence            0011111     22222221110  000 01111111 111  1         147899999999999999999999999


Q ss_pred             CcCC
Q 029497          189 GTLV  192 (192)
Q Consensus       189 ~~l~  192 (192)
                      ++++
T Consensus       203 ~g~~  206 (232)
T 2bhw_A          203 KGPL  206 (232)
T ss_dssp             SCSH
T ss_pred             CChH
Confidence            9863

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.78  E-value=3.3e-20  Score=161.89  Aligned_cols=110  Identities=17%  Similarity=0.143  Sum_probs=64.0

Q ss_pred             cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh---hhh--------hh-hhHHH-HHHHHHHHH
Q 029497           83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA---QLS--------DG-GVAWF-LGTSVLLTV  141 (192)
Q Consensus        83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q~~--------~~-g~~~f-l~~~~ll~~  141 (192)
                      .|||+||+.        +++|++||||||||++|.++.|++++.++..   ++.        .. .+.++ ++++++++.
T Consensus        86 GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~  165 (269)
T 2wsc_2           86 GFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEG  165 (269)
T ss_dssp             --------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTHHHHHHH
T ss_pred             CCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHHHHHHHH
Confidence            489999953        2799999999999999999999998655431   111        10 11111 223455555


Q ss_pred             Hhhh-----------ccccCCC------CCCCCC--CC------------CChHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 029497          142 ASLV-----------PLFKGVS------VESKSD--GF------------MTSDAELWNGRFAMLGLVALAFTEFVKGGT  190 (192)
Q Consensus       142 asl~-----------P~~~g~~------~e~~~~--G~------------ft~~AEl~NGRlAMlG~~gl~~~E~vTG~~  190 (192)
                      ..+.           |.|.+..      ..+++.  .+            ..+.+|++|||||||||+|+++||.+||++
T Consensus       166 ~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g  245 (269)
T 2wsc_2          166 RRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG  245 (269)
T ss_dssp             HHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTC
T ss_pred             HHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCC
Confidence            4331           1122110      011111  11            135799999999999999999999999998


Q ss_pred             CC
Q 029497          191 LV  192 (192)
Q Consensus       191 l~  192 (192)
                      ++
T Consensus       246 ~l  247 (269)
T 2wsc_2          246 PI  247 (269)
T ss_dssp             SS
T ss_pred             hH
Confidence            74

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=99.77  E-value=1.1e-18  Score=150.48  Aligned_cols=98  Identities=26%  Similarity=0.279  Sum_probs=59.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCchhh---h-h----hhhh------h---HHH-HHHHHHHHHHhhhccccCC-CC
Q 029497           93 APERINGRLAMIGFVAALGVEISKGQDVFA---Q-L----SDGG------V---AWF-LGTSVLLTVASLVPLFKGV-SV  153 (192)
Q Consensus        93 ~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q-~----~~~g------~---~~f-l~~~~ll~~asl~P~~~g~-~~  153 (192)
                      ++|++||||||||++|+++.|+++|..++.   + +    .+.+      +   .++ ++++++++...... +.+. ..
T Consensus        94 eaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~-~~~~~~~  172 (243)
T 3pl9_A           94 ECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE-LDTEKRL  172 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSC-CCTTTTT
T ss_pred             HhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcc-cCCcccc
Confidence            579999999999999999999998754321   1 0    0000      0   111 12233333322211 0000 00


Q ss_pred             CCC----CCCC--------CChHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Q 029497          154 ESK----SDGF--------MTSDAELWNGRFAMLGLVALAFTEFVKGGTL  191 (192)
Q Consensus       154 e~~----~~G~--------ft~~AEl~NGRlAMlG~~gl~~~E~vTG~~l  191 (192)
                      .++    ..|.        ..+.+|+||||+||+||+|+++||++||+++
T Consensus       173 ~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gp  222 (243)
T 3pl9_A          173 YPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGP  222 (243)
T ss_dssp             CCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             CCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCh
Confidence            011    1111        1257999999999999999999999999985

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.75  E-value=1.1e-20  Score=165.46  Aligned_cols=110  Identities=23%  Similarity=0.248  Sum_probs=61.9

Q ss_pred             cccccCCCCC-------------chHHHHHHHHHHHHHHHHHHHHHhCCchhh------hhh-----hhh----------
Q 029497           83 FSEVFAFSGP-------------APERINGRLAMIGFVAALGVEISKGQDVFA------QLS-----DGG----------  128 (192)
Q Consensus        83 f~D~lgFsg~-------------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~------Q~~-----~~g----------  128 (192)
                      .|||+||+.+             ++|++|||+||||++++++.|++++.++..      +..     ..+          
T Consensus        78 GfDPlGl~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~  157 (276)
T 2wsc_3           78 GFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYT  157 (276)
T ss_dssp             -------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCS
T ss_pred             CCCccccCChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchH
Confidence            4899999642             599999999999999999999998766431      111     011          


Q ss_pred             hHHH-HHHHHHHHHHhhhc-----------cc--cC------CCCCCCC--CCC--C---------ChHHHHHHHHHHHH
Q 029497          129 VAWF-LGTSVLLTVASLVP-----------LF--KG------VSVESKS--DGF--M---------TSDAELWNGRFAML  175 (192)
Q Consensus       129 ~~~f-l~~~~ll~~asl~P-----------~~--~g------~~~e~~~--~G~--f---------t~~AEl~NGRlAMl  175 (192)
                      +.|+ ++.+++++.....-           .+  .+      +...+++  +.+  |         .+.+|++||||||+
T Consensus       158 l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMl  237 (276)
T 2wsc_3          158 LFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAML  237 (276)
T ss_dssp             TTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHH
Confidence            1111 12233333322110           01  00      0011111  111  1         24789999999999


Q ss_pred             HHHHHHHHHHHhCCcCC
Q 029497          176 GLVALAFTEFVKGGTLV  192 (192)
Q Consensus       176 G~~gl~~~E~vTG~~l~  192 (192)
                      ||+|+++||++||++++
T Consensus       238 a~~g~~~~~~~tg~g~~  254 (276)
T 2wsc_3          238 AILGYFVQALVTGVGPY  254 (276)
T ss_dssp             HHHHHHSSCCCCSSCCS
T ss_pred             HHHHHHHHHHhcCCChH
Confidence            99999999999999864

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.75  E-value=1.1e-19  Score=157.07  Aligned_cols=110  Identities=20%  Similarity=0.265  Sum_probs=64.8

Q ss_pred             CcccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh---hhhh--------h-hhHHH-HHHHHHHH
Q 029497           82 GFSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA---QLSD--------G-GVAWF-LGTSVLLT  140 (192)
Q Consensus        82 ~f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q~~~--------~-g~~~f-l~~~~ll~  140 (192)
                      ..|||+||+.        +++|++|||+||||++++++.|++++.++..   ++..        . .+.++ ++++++++
T Consensus        74 ~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E  153 (251)
T 2wsc_4           74 NGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVE  153 (251)
T ss_dssp             -------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTT
T ss_pred             CCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHH
Confidence            3599999964        2799999999999999999999998866542   1110        0 11111 12334444


Q ss_pred             HHhhh-----------ccccCCCCC------CCC-CCCC-------ChHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497          141 VASLV-----------PLFKGVSVE------SKS-DGFM-------TSDAELWNGRFAMLGLVALAFTEFVKGGTLV  192 (192)
Q Consensus       141 ~asl~-----------P~~~g~~~e------~~~-~G~f-------t~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~  192 (192)
                      ...+.           |.|.+...+      +++ +.++       .+.+||||||| ||||+|+++||++||++++
T Consensus       154 ~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl  229 (251)
T 2wsc_4          154 IRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF  229 (251)
T ss_dssp             HHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCC
T ss_pred             HHHhhcccCCCcccccccccccccccccccCCCCccCccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHH
Confidence            43221           112211111      111 1121       25899999999 9999999999999999864

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.67  E-value=5.7e-18  Score=145.78  Aligned_cols=108  Identities=19%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchh-----hhhhh------------hhhHHHHHHHH
Q 029497           83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVF-----AQLSD------------GGVAWFLGTSV  137 (192)
Q Consensus        83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~-----~Q~~~------------~g~~~fl~~~~  137 (192)
                      .|||+||+.        +++|++||||||||++|.++.|+++...+.     ..+..            ..+.. ++.+.
T Consensus        67 gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~-i~~iq  145 (241)
T 2wsc_1           67 GFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPT-ILAIE  145 (241)
T ss_dssp             CCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHH-HHHHH
T ss_pred             CcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHH-HHHHH
Confidence            399999974        279999999999999999999986432221     11110            01111 11111


Q ss_pred             HHHHHhhhcccc--CCCC----CCC-CCCC-----------CChHHHHHHHHHHHHHHHHHHHHH-HHhCCcCC
Q 029497          138 LLTVASLVPLFK--GVSV----ESK-SDGF-----------MTSDAELWNGRFAMLGLVALAFTE-FVKGGTLV  192 (192)
Q Consensus       138 ll~~asl~P~~~--g~~~----e~~-~~G~-----------ft~~AEl~NGRlAMlG~~gl~~~E-~vTG~~l~  192 (192)
                      ++. ..++..++  +.+.    .++ .+.+           ..+.+|+||||+||+||+|+++|| .+||++++
T Consensus       146 ~l~-ig~~E~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl  218 (241)
T 2wsc_1          146 FLA-IAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL  218 (241)
T ss_dssp             HHH-THHHHHHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred             HHH-HHHHHHHHHhccCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence            111 11122111  1000    000 0111           125799999999999999999999 58999864

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.72  E-value=1.3e-08  Score=87.77  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=42.0

Q ss_pred             CCCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           79 MSTGFSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        79 ~~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      ...++|||||+...        .+|++|||+||+||++.+++|+.||++.++|+..
T Consensus       173 ~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~  228 (243)
T 3pl9_A          173 YPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT  228 (243)
T ss_dssp             CCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            34578999999742        6999999999999999999999999999888754

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.69  E-value=1.6e-08  Score=86.26  Aligned_cols=47  Identities=26%  Similarity=0.365  Sum_probs=41.0

Q ss_pred             CCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           80 STGFSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        80 ~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      ..++|||+||...        ..|++|||+||+||++.++.|++||++.+.|+..
T Consensus       157 Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~  211 (232)
T 2bhw_A          157 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD  211 (232)
T ss_dssp             CCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHH
T ss_pred             CCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            3568999999753        5899999999999999999999999998887754

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.45  E-value=3.2e-08  Score=86.61  Aligned_cols=45  Identities=27%  Similarity=0.392  Sum_probs=37.2

Q ss_pred             cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh
Q 029497           83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG  127 (192)
Q Consensus        83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~  127 (192)
                      +||||||..        +..|++|||+||+||++.++.|++||++.++|+...
T Consensus       208 ~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~H  260 (276)
T 2wsc_3          208 FFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDH  260 (276)
T ss_dssp             SCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC----
T ss_pred             cccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHh
Confidence            499999963        368999999999999999999999999998887653

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.44  E-value=3.3e-08  Score=86.28  Aligned_cols=46  Identities=26%  Similarity=0.346  Sum_probs=39.8

Q ss_pred             CCCc-ccccCCCC---------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhh
Q 029497           80 STGF-SEVFAFSG---------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLS  125 (192)
Q Consensus        80 ~~~f-~D~lgFsg---------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~  125 (192)
                      ..++ ||||||..         ...|++|||+||+||++.++.|+++|++.++|+.
T Consensus       196 PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             TTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             CCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            3455 99999962         2689999999999999999999999999887765

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=98.43  E-value=5.4e-08  Score=83.70  Aligned_cols=48  Identities=25%  Similarity=0.343  Sum_probs=40.3

Q ss_pred             CCCCcccccCCCC--------CchHHHHHHHHHHHHHHHHHHH-HHhCCchhhhhhh
Q 029497           79 MSTGFSEVFAFSG--------PAPERINGRLAMIGFVAALGVE-ISKGQDVFAQLSD  126 (192)
Q Consensus        79 ~~~~f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E-~~tg~~~~~Q~~~  126 (192)
                      ...|+|||+||..        +..|++|||+||+|+++.++.| ..+|++.++|+..
T Consensus       167 yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~  223 (241)
T 2wsc_1          167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT  223 (241)
T ss_dssp             SCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred             CCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence            3456899999964        2689999999999999999999 5799988877654

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.23  E-value=3e-07  Score=79.40  Aligned_cols=45  Identities=27%  Similarity=0.401  Sum_probs=39.0

Q ss_pred             CCcccccCCCC----CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497           81 TGFSEVFAFSG----PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD  126 (192)
Q Consensus        81 ~~f~D~lgFsg----~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~  126 (192)
                      .++||||++..    ...|++|||+ |+|++|.+++|+.||++.++++..
T Consensus       186 Gg~FDPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~  234 (251)
T 2wsc_4          186 GGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ  234 (251)
T ss_dssp             CCTTCCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred             CCccCccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence            45799999863    4789999999 999999999999999998877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.87
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.7

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.87  E-value=6.4e-22  Score=164.58  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=31.0

Q ss_pred             ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhC
Q 029497           84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKG  117 (192)
Q Consensus        84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg  117 (192)
                      ||||||+.        +++|++|||+||||++|++++|+++.
T Consensus        33 FDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~   74 (218)
T d1rwta_          33 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR   74 (218)
T ss_dssp             CCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhcc
Confidence            89999985        38999999999999999999999763

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.70  E-value=6.4e-09  Score=85.27  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=41.7

Q ss_pred             CCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh
Q 029497           80 STGFSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSDG  127 (192)
Q Consensus        80 ~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~  127 (192)
                      ..+.|||+++...        ..|++|||+||+|++|.++.|+.||++.++|+.+.
T Consensus       144 ~~g~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h  199 (218)
T d1rwta_         144 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH  199 (218)
T ss_dssp             CCGGGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             CCCCccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Confidence            3467999999653        48999999999999999999999999999887653