Citrus Sinensis ID: 029512

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF
Secondary Structure (PSIPRED)
ccccccccHHHHccccccccHHHHHHHHHcccccccHHHHccccccEEccccccccccccHHHHHHHHccccccEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHcccccEEcccccccccEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccEEEEccccHHHHHHHHHHHcccccHHHHHHccccEEccccccccccccccHHHHHHHHccccccEEEEccccHcccccccccEEEEEccccccHHHHHHHHHccHccccccccccccEEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
meknvemsknaqfraiqpspsilsfvednllgrrrpielrragynielsapldnipfstsseRERIEENIFRNKLEFFAAAkvsssfpapdlpeiafagrsnvgksSMLNALTRQwgvvrtsdkpgltqtINFFKLGTKlclvdlpgygfaYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF
Flexible Loop (DISEMBL)
MEKNVemsknaqfraiqpspsilsfvednllGRRRPIELRragynielsapldnipfstsSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF
Low Complexity Region (SEG)
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPfstssererieenifrnKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF
Disordered region (IsUnstruct)
*********************ILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNI************ENIFRNKLEFFAAAKVS*******LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILY*
Disordered Region (DISOPRED)
*****************************************************************IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF
Disordered Region (DISEMBL)
**********AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF
Disordered Region (DISPRO)
***NVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q2GAU7	217	Probable GTP-binding prot	yes	no	0.625	0.552	0.468	4e-24
Q39YG6	204	Probable GTP-binding prot	yes	no	0.557	0.524	0.495	1e-23
A8GM60	212	Probable GTP-binding prot	yes	no	0.531	0.481	0.480	4e-22
Q2LVW9	196	Probable GTP-binding prot	yes	no	0.562	0.551	0.458	4e-22
Q4UNC2	212	Probable GTP-binding prot	yes	no	0.546	0.495	0.476	7e-22
Q6AJW0	193	Probable GTP-binding prot	yes	no	0.583	0.580	0.438	7e-22
Q5FPX9	227	Probable GTP-binding prot	yes	no	0.5	0.422	0.479	3e-21
Q1GN74	219	Probable GTP-binding prot	yes	no	0.671	0.589	0.422	3e-21
B2A1E8	193	Probable GTP-binding prot	yes	no	0.546	0.544	0.467	4e-21
Q16AA3	216	Probable GTP-binding prot	yes	no	0.609	0.541	0.45	4e-21

>sp|Q2GAU7|ENGB_NOVAD Probable GTP-binding protein EngB OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=engB PE=3 SV=1

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 8/128 (6%)

Query: 56  PFSTSSERERIEEN--IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALT 113
           P   ++ +E IE+   +F  ++EF  +A      P PD+PEIAFAGRSNVGKSS+LNALT
Sbjct: 3   PEEQAAHQELIEQARLLFAGRVEFLKSAPALKFLPDPDVPEIAFAGRSNVGKSSLLNALT 62

Query: 114 RQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171
            +  + RTS  PG TQ +N+F++G  T+L LVD+PGYGFA A  +V + W  LV    R+
Sbjct: 63  GRKSLARTSVTPGRTQELNYFEVGEPTRLRLVDMPGYGFAKAPPKVVETWRRLV----RD 118

Query: 172 FWSCTCFL 179
           F      L
Sbjct: 119 FLRGRVVL 126

Necessary for normal cell division and for the maintenance of normal septation.
Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)

>sp|Q39YG6|ENGB_GEOMG Probable GTP-binding protein EngB OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=engB PE=3 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 2/109 (1%)

Query: 76  EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
           EF  +    + +P P+LPE+AFAGRSNVGKSS++N L  + G+VRTS  PG TQ INFF+
Sbjct: 7   EFVTSGTRPAHYPPPELPEVAFAGRSNVGKSSLINVLVNRKGLVRTSSTPGRTQLINFFR 66

Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLIYI 182
           +   L LVDLPGYGFA     VK  W  +V   +S R   SC   ++ I
Sbjct: 67  VNGSLMLVDLPGYGFAKVPLAVKKEWGPMVETYLSTRPNLSCVVLIVDI 115

Necessary for normal cell division and for the maintenance of normal septation.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|A8GM60|ENGB_RICAH Probable GTP-binding protein EngB OS=Rickettsia akari (strain Hartford) GN=engB PE=3 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 67/102 (65%)

Query: 70  IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           +FR++++F A A   +  P   LPEIAF G+SNVGKSS++N +     + + S+ PG T+
Sbjct: 19  LFRSQVKFVAGAMNINQIPNFSLPEIAFVGKSNVGKSSLINTICNNKNLAKVSNTPGRTR 78

Query: 130 TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171
            INFF L  KL +VDLPGYGFA+    VK+ WE L+S   RN
Sbjct: 79  QINFFNLADKLIIVDLPGYGFAHVPISVKEQWEVLISYYLRN 120

Necessary for normal cell division and for the maintenance of normal septation.

Rickettsia akari (strain Hartford) (taxid: 293614)

>sp|Q2LVW9|ENGB_SYNAS Probable GTP-binding protein EngB OS=Syntrophus aciditrophicus (strain SB) GN=engB PE=3 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 75  LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
           +EF  +A + S +P   LPE+AF GRSNVGKSS++N L R+  + RTS+ PG TQ INFF
Sbjct: 6   VEFVKSATLPSGYPPGSLPEVAFVGRSNVGKSSLINTLLRRKQLARTSNTPGRTQLINFF 65

Query: 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183
            +  +L  VDLPGYGFA   E VK  W  ++    R+   C   +++I 
Sbjct: 66  NVNQELLFVDLPGYGFARVPEAVKREWGPMIETYLRD-RECLRMVVFIL 113

Necessary for normal cell division and for the maintenance of normal septation.

Syntrophus aciditrophicus (strain SB) (taxid: 56780)

>sp|Q4UNC2|ENGB_RICFE Probable GTP-binding protein EngB OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=engB PE=3 SV=1

 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 67/105 (63%)

Query: 70  IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           +FR++ +F A A   +  P   LPEIAF G+SNVGKSS++N +     + + S+ PG T+
Sbjct: 17  LFRHQAKFVAGAMNINQIPNFSLPEIAFVGKSNVGKSSLINTICNNKNLAKVSNTPGRTR 76

Query: 130 TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWS 174
            INFF L  KL +VDLPGYGFA     VK+ WE L+S   RN +S
Sbjct: 77  QINFFNLADKLIIVDLPGYGFANVPISVKEQWEVLISYYLRNSYS 121

Necessary for normal cell division and for the maintenance of normal septation.

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q6AJW0|ENGB_DESPS Probable GTP-binding protein EngB OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=engB PE=3 SV=1

 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
           N + F  +       P   LPE AFAGRSNVGKSS++N L R+ G V+ S +PG TQ +N
Sbjct: 4   NDITFLLSVHGLDQLPEDGLPEFAFAGRSNVGKSSLMNTLLRRSGFVKVSGRPGKTQGLN 63

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLIYIFY 184
           FF+      LVDLPGYGFA   +E+++ W++L++  IS R    C   +I I +
Sbjct: 64  FFQAAEDCMLVDLPGYGFARVSKEMQNNWQKLITSYISEREALKCVVVIIDIRH 117

Necessary for normal cell division and for the maintenance of normal septation.

Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439)

>sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein EngB OS=Gluconobacter oxydans (strain 621H) GN=engB PE=3 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 66/96 (68%)

Query: 70  IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           +F  + EFF  ++     P    PE+AFAGRSNVGKSS++NALT +  + R S +PG T+
Sbjct: 20  LFAGECEFFFGSQKIDQLPPVGRPEVAFAGRSNVGKSSIINALTGRRALARASSEPGRTK 79

Query: 130 TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
            +NFF L  +L LVD+PGYGFA A + VK+ W++++
Sbjct: 80  QLNFFNLADRLSLVDMPGYGFAKAAKSVKEDWQDMM 115

Necessary for normal cell division and for the maintenance of normal septation.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

>sp|Q1GN74|ENGB_SPHAL Probable GTP-binding protein EngB OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=engB PE=3 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 6/135 (4%)

Query: 52  LDNIPFSTSSERERIEE--NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSML 109
           +  I     ++ ER E    +F   + F  +A      P P +PEIAFAGRSNVGKSS+L
Sbjct: 1   MSEIELEPGADPERAERARKLFSGPIAFLKSAPALQHLPVPSVPEIAFAGRSNVGKSSLL 60

Query: 110 NALTRQWGVVRTSDKPGLTQTINFFKLGTKLC--LVDLPGYGFAYAKEEVKDAWEELVS- 166
           NALT + G+ RTS  PG TQ +N+F +G      LVD+PGYGFA A ++V   W  L++ 
Sbjct: 61  NALTNRNGLARTSVTPGRTQELNYFDVGEPPVFRLVDMPGYGFAKAPKDVVRKWRFLIND 120

Query: 167 -ISYRNFWSCTCFLI 180
            +  R     T  LI
Sbjct: 121 YLRGRQVLKRTLVLI 135

Necessary for normal cell division and for the maintenance of normal septation.

Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (taxid: 317655)

>sp|B2A1E8|ENGB_NATTJ Probable GTP-binding protein EngB OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=engB PE=3 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 76  EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
           E+ A+A +SS FP+   PEI+F GRSNVGKSS++N L  +  +  TS +PG T+TINFF 
Sbjct: 7   EYMASAYLSSQFPSEMYPEISFIGRSNVGKSSLINTLINRKNLAYTSKQPGKTRTINFFL 66

Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
           +   L  VDLPGYGFA   + ++  WE+LV+  +S RN    +  +I
Sbjct: 67  INKSLYFVDLPGYGFAKVSKTMQKDWEQLVNAYLSQRNTLKLSILII 113

Necessary for normal cell division and for the maintenance of normal septation.

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

>sp|Q16AA3|ENGB_ROSDO Probable GTP-binding protein EngB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=engB PE=3 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 46  IELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGK 105
           ++L  P+   P   S E+ R+   +F    EF       S  P PD  E+ FAGRSNVGK
Sbjct: 1   MQLPFPVAQDPDQHSLEKGRL---LFAGDTEFVKGVVAMSGLPDPDRLEVCFAGRSNVGK 57

Query: 106 SSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           SS++NALT + G+ R S+ PG TQ INFF  G    LVDLPGYG+A A   V + W+ L+
Sbjct: 58  SSLINALTGRKGLARASNTPGRTQEINFFTAGESHYLVDLPGYGYANAPVPVVEKWQRLL 117

Necessary for normal cell division and for the maintenance of normal septation.

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
359478497	574	PREDICTED: uncharacterized protein LOC10	0.906	0.303	0.859	1e-84
297745779	395	unnamed protein product [Vitis vinifera]	0.906	0.440	0.859	5e-84
255553339	489	GTP binding protein, putative [Ricinus c	0.906	0.355	0.869	5e-83
356569473	540	PREDICTED: uncharacterized protein LOC10	0.906	0.322	0.846	5e-82
356537641	535	PREDICTED: uncharacterized protein LOC10	0.906	0.325	0.840	5e-81
224145468	305	predicted protein [Populus trichocarpa]	0.932	0.586	0.818	2e-79
42573726	465	putative GTP-binding protein CGPA [Arabi	0.927	0.382	0.794	9e-78
10176792	397	unnamed protein product [Arabidopsis tha	0.927	0.448	0.794	2e-77
297793371	467	predicted protein [Arabidopsis lyrata su	0.927	0.381	0.788	2e-77
18424095	446	putative GTP-binding protein CGPA [Arabi	0.927	0.399	0.794	2e-77

>gi|359478497|ref|XP_002276707.2| PREDICTED: uncharacterized protein LOC100255308 [Vitis vinifera]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/178 (85%), Positives = 163/178 (91%), Gaps = 4/178 (2%)

Query: 1   MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTS 60
           +EKN+ MSKNAQFRAIQPSPSIL+FVEDNLLGRRR IELRR+GYN ELSAPLDNIPFSTS
Sbjct: 305 LEKNITMSKNAQFRAIQPSPSILAFVEDNLLGRRRLIELRRSGYNTELSAPLDNIPFSTS 364

Query: 61  SERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVR 120
           SERERIEE+IFRNKL FFAAA VSSSFP PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR
Sbjct: 365 SERERIEESIFRNKLTFFAAANVSSSFPPPDLPEIAFAGRSNVGKSSMLNALTRQWGVVR 424

Query: 121 TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCF 178
           TSDKPGLTQTINFFKLG+KL LVDLPGYGFAYAKEEVKD+WEELV+     +   +CF
Sbjct: 425 TSDKPGLTQTINFFKLGSKLSLVDLPGYGFAYAKEEVKDSWEELVN----EYMIMSCF 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745779|emb|CBI15835.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 153/178 (85%), Positives = 163/178 (91%), Gaps = 4/178 (2%)

Query: 1   MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTS 60
           +EKN+ MSKNAQFRAIQPSPSIL+FVEDNLLGRRR IELRR+GYN ELSAPLDNIPFSTS
Sbjct: 101 LEKNITMSKNAQFRAIQPSPSILAFVEDNLLGRRRLIELRRSGYNTELSAPLDNIPFSTS 160

Query: 61  SERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVR 120
           SERERIEE+IFRNKL FFAAA VSSSFP PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR
Sbjct: 161 SERERIEESIFRNKLTFFAAANVSSSFPPPDLPEIAFAGRSNVGKSSMLNALTRQWGVVR 220

Query: 121 TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCF 178
           TSDKPGLTQTINFFKLG+KL LVDLPGYGFAYAKEEVKD+WEELV+     +   +CF
Sbjct: 221 TSDKPGLTQTINFFKLGSKLSLVDLPGYGFAYAKEEVKDSWEELVN----EYMIMSCF 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553339|ref|XP_002517711.1| GTP binding protein, putative [Ricinus communis] gi|223543109|gb|EEF44643.1| GTP binding protein, putative [Ricinus communis]

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/176 (86%), Positives = 158/176 (89%), Gaps = 2/176 (1%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAI+PSPSILSFVEDNLLGRRR IEL+RAGYNIELSAPLDNIP STSSERERI
Sbjct: 213 MSKNAQFRAIKPSPSILSFVEDNLLGRRRLIELKRAGYNIELSAPLDNIPLSTSSERERI 272

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKL FFAAAKVSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGV RTSDKPG
Sbjct: 273 EENIFRNKLTFFAAAKVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVARTSDKPG 332

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
           LTQTINFF LG KLCLVDLPGYGFAYAKEEVKDAWE+LV   +S R      C LI
Sbjct: 333 LTQTINFFSLGPKLCLVDLPGYGFAYAKEEVKDAWEDLVKEYVSTRVGLKRVCLLI 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569473|ref|XP_003552925.1| PREDICTED: uncharacterized protein LOC100799694 [Glycine max]

 Score =  308 bits (790), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 149/176 (84%), Positives = 160/176 (90%), Gaps = 2/176 (1%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAIQPSP ILSFVE NLLGRRR I+L+RAGYNI+LSAPLDNIPFS+SSERE+I
Sbjct: 277 MSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKI 336

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKLEFFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG
Sbjct: 337 EENIFRNKLEFFAAAKVSSSFPTPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPG 396

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
           LTQTINFF+LGTK CLVDLPGYGFAYAKEEVK++WEELV   +S R      C LI
Sbjct: 397 LTQTINFFQLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLKRVCLLI 452

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537641|ref|XP_003537334.1| PREDICTED: uncharacterized protein LOC100801850 [Glycine max]

 Score =  305 bits (781), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 148/176 (84%), Positives = 159/176 (90%), Gaps = 2/176 (1%)

Query: 7   MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
           MSKNAQFRAIQPSP ILSFVE NLLGRRR I+L+RAGYNI+LSAPLDNIPFS+SSERE+I
Sbjct: 272 MSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKI 331

Query: 67  EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
           EENIFRNKL+FFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG
Sbjct: 332 EENIFRNKLDFFAAAKVSSSFPPPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPG 391

Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
           LTQTINFF LGTK CLVDLPGYGFAYAKEEVK++WEELV   +S R      C LI
Sbjct: 392 LTQTINFFNLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLRRVCLLI 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145468|ref|XP_002325653.1| predicted protein [Populus trichocarpa] gi|222862528|gb|EEF00035.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/182 (81%), Positives = 159/182 (87%), Gaps = 3/182 (1%)

Query: 1   MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTS 60
           +EK+  MS NAQFRAIQPSPSILSFVEDN LGRRR IEL+RAGYN +LSAPLDNIPFSTS
Sbjct: 38  LEKDAGMSMNAQFRAIQPSPSILSFVEDNFLGRRRSIELKRAGYNTDLSAPLDNIPFSTS 97

Query: 61  SERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVR 120
           SERERIEENIFRNKL FFAAAKVSSSFP P LPEIAFAGRSNVGKSS+LN+LTRQWGV R
Sbjct: 98  SERERIEENIFRNKLTFFAAAKVSSSFPPPGLPEIAFAGRSNVGKSSLLNSLTRQWGVAR 157

Query: 121 TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCF 178
           TSDKPGLTQTINFF+LG  +CLVDLPGYGFAYAKEEVKD+WEELV   +S R      C 
Sbjct: 158 TSDKPGLTQTINFFELGN-VCLVDLPGYGFAYAKEEVKDSWEELVKEYVSMRVNLKRVCL 216

Query: 179 LI 180
           LI
Sbjct: 217 LI 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573726|ref|NP_974959.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|222423373|dbj|BAH19659.1| AT5G58370 [Arabidopsis thaliana] gi|332009661|gb|AED97044.1| putative GTP-binding protein CGPA [Arabidopsis thaliana]

 Score =  294 bits (753), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 159/180 (88%), Gaps = 2/180 (1%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP STS+E
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LV   +S R      C L+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10176792|dbj|BAA96928.2| unnamed protein product [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 159/180 (88%), Gaps = 2/180 (1%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP STS+E
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LV   +S R      C L+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793371|ref|XP_002864570.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310405|gb|EFH40829.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 159/180 (88%), Gaps = 2/180 (1%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL++AGYN EL APLDNIP STS+E
Sbjct: 201 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKKAGYNTELPAPLDNIPQSTSTE 260

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 261 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 320

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LV   +S R      C L+
Sbjct: 321 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 380

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424095|ref|NP_568876.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|14334980|gb|AAK59667.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|17104637|gb|AAL34207.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|332009660|gb|AED97043.1| putative GTP-binding protein CGPA [Arabidopsis thaliana]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 159/180 (88%), Gaps = 2/180 (1%)

Query: 3   KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
           K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP STS+E
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query: 63  RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
           RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
           DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LV   +S R      C L+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2161243	465	AT5G58370 [Arabidopsis thalian	0.927	0.382	0.722	1.1e-62
DICTYBASE|DDB_G0348940	743	DDB_G0348940 [Dictyostelium di	0.557	0.144	0.545	1.1e-24
UNIPROTKB|Q748I9	206	engB "Probable GTP-binding pro	0.552	0.514	0.485	3.5e-20
TIGR_CMR|GSU_3013	206	GSU_3013 "GTP-binding protein"	0.552	0.514	0.485	3.5e-20
UNIPROTKB|Q5LW13	217	engB "Probable GTP-binding pro	0.468	0.414	0.522	2.5e-19
TIGR_CMR|SPO_0530	217	SPO_0530 "GTP-binding protein"	0.468	0.414	0.522	2.5e-19
UNIPROTKB|P38424	195	engB "Probable GTP-binding pro	0.479	0.471	0.467	1.7e-18
TAIR|locus:2144271	318	AT5G11480 [Arabidopsis thalian	0.437	0.264	0.523	7.5e-18
TAIR|locus:2059221	300	EMB2001 "embryo defective 2001	0.567	0.363	0.431	1.2e-17
UNIPROTKB|Q81LC2	198	engB "Probable GTP-binding pro	0.479	0.464	0.445	2.5e-17

TAIR|locus:2161243 AT5G58370 [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 130/180 (72%), Positives = 143/180 (79%)

Query:     3 KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPXXXXXX 62
             K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP      
Sbjct:   199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258

Query:    63 XXXXXXXXXXXKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
                        KLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct:   259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318

Query:   123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRNFWSCTCFLI 180
             DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LV   +S R      C L+
Sbjct:   319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

DICTYBASE|DDB_G0348940 DDB_G0348940 [Dictyostelium discoideum (taxid:44689)]

 Score = 291 (107.5 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 60/110 (54%), Positives = 80/110 (72%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             K++F  AAK   SF    LPE+AF GRSNVGKSS++NALT++ G+ +TSDKPG TQ+IN+
Sbjct:   257 KMKFIGAAKNIDSFLPETLPEVAFIGRSNVGKSSLINALTQR-GLAKTSDKPGQTQSINW 315

Query:   134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSC-TCFLIYI 182
             F+LG+ L LVDLPGYGFA+AKE + + W + ++I Y     C +C  I I
Sbjct:   316 FELGSTLYLVDLPGYGFAFAKETLVEQWSD-ITIHYLTERKCISCVFILI 364

GO:0005525 "GTP binding" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q748I9 engB "Probable GTP-binding protein EngB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 52/107 (48%), Positives = 64/107 (59%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF  +      +P  DL EIAF GRSNVGKSS++N L  +  +VRTS  PG TQ INFF+
Sbjct:     8 EFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFR 67

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYI 182
             +   L LVDLPGYGFA    EVK  W  +V  +Y    SC   ++ I
Sbjct:    68 VNGSLMLVDLPGYGFARVPPEVKRQWGPMVE-TYLAGRSCLACVVLI 113

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3013 GSU_3013 "GTP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 52/107 (48%), Positives = 64/107 (59%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF  +      +P  DL EIAF GRSNVGKSS++N L  +  +VRTS  PG TQ INFF+
Sbjct:     8 EFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFR 67

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYI 182
             +   L LVDLPGYGFA    EVK  W  +V  +Y    SC   ++ I
Sbjct:    68 VNGSLMLVDLPGYGFARVPPEVKRQWGPMVE-TYLAGRSCLACVVLI 113

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LW13 engB "Probable GTP-binding protein EngB" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/90 (52%), Positives = 59/90 (65%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct:    29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
              G +L LVDLPGYG+A A  +V + W++L+
Sbjct:    89 QGPELYLVDLPGYGYANAPLKVVEKWQKLL 118

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0530 SPO_0530 "GTP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/90 (52%), Positives = 59/90 (65%)

Query:    76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
             EF       S  P  D  E+ FAGRSNVGKSS++NALT   G+ R S+ PG TQ INFF 
Sbjct:    29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88

Query:   136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
              G +L LVDLPGYG+A A  +V + W++L+
Sbjct:    89 QGPELYLVDLPGYGYANAPLKVVEKWQKLL 118

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P38424 engB "Probable GTP-binding protein EngB" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 43/92 (46%), Positives = 59/92 (64%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+NF
Sbjct:     5 KSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF 64

Query:   134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
             + +  +L  VD+PGYGFA   +  ++AW  ++
Sbjct:    65 YIINDELHFVDVPGYGFAKVSKSEREAWGRMI 96

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2144271 AT5G11480 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 44/84 (52%), Positives = 54/84 (64%)

Query:    88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
             PA  LPE A  GRSNVGKSS+LN+L R+  +  TS KPG TQ IN F++  K  LVDLPG
Sbjct:   131 PADGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRINDKWYLVDLPG 190

Query:   148 YGFAYAKEEVKDAWEELVSISYRN 171
             YG+A A  E+K  W +     + N
Sbjct:   191 YGYASAPHELKQDWNKFTKDYFLN 214

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

TAIR|locus:2059221 EMB2001 "embryo defective 2001" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 47/109 (43%), Positives = 60/109 (55%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             ++EF  ++  +   P  D PEIA  GRSNVGKSS++N L R+  V  TS KPG TQ IN 
Sbjct:   102 EVEFVKSSARARDCPKDDRPEIAILGRSNVGKSSLINCLVRKKEVALTSKKPGKTQLINH 161

Query:   134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYI 182
             F +     +VDLPGYGFA   +  K  W       + N  S  C L+ I
Sbjct:   162 FLVNKSWYIVDLPGYGFAKVSDAAKTDWSAFTKGYFLNRDSLVCVLLLI 210

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

UNIPROTKB|Q81LC2 engB "Probable GTP-binding protein EngB" [Bacillus anthracis (taxid:1392)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 41/92 (44%), Positives = 58/92 (63%)

Query:    74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
             K +   +A     +P  DLPEIA AGRSNVGKSS +N +  +  +VR S KPG TQT+NF
Sbjct:     5 KADIVISAVKPEQYPDGDLPEIALAGRSNVGKSSFINKILNRKKLVRISSKPGKTQTLNF 64

Query:   134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
             F +   +  VD+PGYG+A   +  + AW +++
Sbjct:    65 FLINEMMHFVDVPGYGYAKVSKTERAAWGKMI 96

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023958001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (573 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
PRK00454	196	PRK00454, engB, GTP-binding protein YsxC; Reviewed	2e-41
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	7e-40
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	2e-38
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	1e-35
PRK04213	201	PRK04213, PRK04213, GTP-binding protein; Provision	3e-16
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-16
cd00880	161	cd00880, Era_like, E	6e-10
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-09
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	4e-09
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	6e-09
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	7e-08
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	2e-07
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	5e-07
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	6e-07
cd11383	140	cd11383, YfjP, YfjP GTPase	1e-06
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	1e-06
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	2e-06
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	2e-06
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	9e-06
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	1e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	2e-05
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	2e-05
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	3e-05
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	4e-05
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	5e-05
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	1e-04
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	2e-04
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	2e-04
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	2e-04
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	2e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	2e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	3e-04
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	3e-04
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	4e-04
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	7e-04
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	7e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	8e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	8e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-04
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	8e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	8e-04
cd04163	168	cd04163, Era, E	0.002
TIGR01933	261	TIGR01933, hflK, HflK protein	0.003
COG1084	346	COG1084, COG1084, Predicted GTPase [General functi	0.004

>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed

 Score =  137 bits (349), Expect = 2e-41
 Identities = 51/97 (52%), Positives = 66/97 (68%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
            +F +  EF  +A      P  D PEIAFAGRSNVGKSS++NALT +  + RTS  PG T
Sbjct: 1   KLFIHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRT 60

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           Q INFF++  KL LVDLPGYG+A   +E K+ W++L+
Sbjct: 61  QLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97

Length = 196

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score =  133 bits (337), Expect = 7e-40
 Identities = 48/91 (52%), Positives = 61/91 (67%)

Query: 76  EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
           EF  +A      P  D PEIAFAGRSNVGKSS++NALT +  + RTS  PG TQ INFF+
Sbjct: 2   EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE 61

Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166
           +     LVDLPGYG+A   +E K+ W++L+ 
Sbjct: 62  VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score =  130 bits (330), Expect = 2e-38
 Identities = 52/97 (53%), Positives = 69/97 (71%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
            +  +K +F  +A     +P  DLPEIAFAGRSNVGKSS++NALT Q  + RTS  PG T
Sbjct: 1   KLNYHKAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT 60

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           Q INFF++  +L LVDLPGYG+A   +EVK+ W++L+
Sbjct: 61  QLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLI 97

Length = 200

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score =  122 bits (308), Expect = 1e-35
 Identities = 43/72 (59%), Positives = 55/72 (76%)

Query: 94  EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 153
           E+AFAGRSNVGKSS++NALT +  + RTS  PG TQ INFF +G K  LVDLPGYG+A  
Sbjct: 1   EVAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKV 60

Query: 154 KEEVKDAWEELV 165
            +EV++ W +L+
Sbjct: 61  SKEVREKWGKLI 72

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional

 Score = 73.0 bits (180), Expect = 3e-16
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 8/72 (11%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA- 151
           PEI F GRSNVGKS+++  LT +   VR   +PG+T+  N +  G  + L DLPG+GF  
Sbjct: 10  PEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWGDFI-LTDLPGFGFMS 66

Query: 152 ----YAKEEVKD 159
                 +E++KD
Sbjct: 67  GVPKEVQEKIKD 78

Length = 201

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 70.0 bits (172), Expect = 6e-16
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 94  EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKLGTKLCLVDLPGYGFA 151
            +A  GR NVGKS+++NALT    V   SD PG T+   +    LG ++ LVD PG    
Sbjct: 1   RVALVGRPNVGKSTLINALTGA-KVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIEG 59

Query: 152 YAKEEVKDAWEE 163
            ++ +  + +  
Sbjct: 60  ASEGKGVEGFNR 71

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGY--G 149
           A  GR NVGKSS+LNAL  Q  V   S  PG T+              + L+D PG    
Sbjct: 1   AIFGRPNVGKSSLLNALLGQN-VGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 150 FAYAKEEVKDAWEEL 164
               +E V++A +  
Sbjct: 60  GGLGRERVEEARQVA 74

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT-----KLCLVDLPGYGF 150
              GR  VGKSS+LNAL     V   SD PG T+  + +         KL LVD PG   
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 151 AYAKEEVKDAWEEL 164
                  + A   L
Sbjct: 60  FGGLGREELARLLL 73

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  V +  +KPG+T+   + ++G  + L+D PG
Sbjct: 125 NVGKSTLINRLRGK-KVAKVGNKPGVTRGQQWIRIGPNIELLDTPG 169

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 99  GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
           G  NVGKS+++N L  +  V +TS++PG T+ I + KL   + L+D PG   
Sbjct: 139 GYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189

Length = 322

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 87  FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLV 143
           F A +   I   G  NVGKSS++NAL      V  S  PG T   QTI    L   + L 
Sbjct: 77  FSALNEATIGLVGYPNVGKSSLINALVGS-KKVSVSSTPGKTKHFQTIF---LEPGITLC 132

Query: 144 DLPG 147
           D PG
Sbjct: 133 DCPG 136

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPG 147
           IA  GR NVGKSS+LNAL  +  V+  SD  G T+    + F   G K  L+D  G
Sbjct: 5   IAIIGRPNVGKSSLLNALLGEERVI-VSDIAGTTRDSIDVPFEYDGQKYTLIDTAG 59

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 82  KVSSSFPAPDLPE--------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---T 130
            +    P  +  E        IA  GR NVGKS+++NAL  +  V+  SD  G T+    
Sbjct: 154 AILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSID 212

Query: 131 INFFKLGTKLCLVD 144
           I F + G K  L+D
Sbjct: 213 IPFERNGKKYTLID 226

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKLGTKLCLVDLPG 147
           +   G   VGKSS++NAL  +     TS     PG T+ I   ++ +K+ L+D PG
Sbjct: 102 VGVVGYPKVGKSSIINALKGR-HSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPG 156

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPGYGFAY 152
              G++  GKSS+ NAL     V    D+   T+    +   T    L L+DLPG G   
Sbjct: 1   GLMGKTGAGKSSLCNALFGT-EVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERG 59

Query: 153 -----AKEEVKDAWEEL 164
                 +E  +    E 
Sbjct: 60  RRDREYEELYRRLLPEA 76

The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
           I   GR N GKSS++NALT Q  +   SD PG T
Sbjct: 9   IGIFGRRNAGKSSLINALTGQ-DIAIVSDVPGTT 41

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 97  FAGRSNVGKSSMLNALTRQWGVVR----------TSDKPGLTQTINFFKLGTKLCLVDLP 146
             G +NVGKS+++NAL +  G              S  PG T  +    LG    L D P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189

Query: 147 GY 148
           G 
Sbjct: 190 GI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPG-Y 148
           IA  G  NVGK+++ NALT  RQ       + PG+T       FK  G ++ +VDLPG Y
Sbjct: 3   IALVGNPNVGKTTLFNALTGARQ----HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTY 58

Query: 149 GF-AYAKEEV 157
               Y++EE 
Sbjct: 59  SLSPYSEEEK 68

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 44.7 bits (107), Expect = 9e-06
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 82  KVSSSFPAPDLPE-------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TI 131
            +    P  +  +       IA  GR NVGKSS++NAL  +  V+  SD  G T+     
Sbjct: 156 AILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDT 214

Query: 132 NFFKLGTKLCLVD 144
            F + G K  L+D
Sbjct: 215 PFERDGQKYTLID 227

Length = 435

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 97  FAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
             G +NVGKSS++N L +Q      V+ TS  PG T  +    L     L D PG 
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGI 214

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLT---QTINFFKLGTKLCLVDLPG- 147
             +A  G  NVGK+++ NALT   G   +  + PG+T   +       G ++ +VDLPG 
Sbjct: 4   LTVALVGNPNVGKTTLFNALT---GANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGT 60

Query: 148 YGF-AYAKEEV 157
           Y   AY+++E 
Sbjct: 61  YSLTAYSEDEK 71

Length = 653

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 11/68 (16%)

Query: 96  AFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKLGTKLC-LVDLPG-YG 149
           A  G  NVGK+++ NALT  RQ    +  + PG+T  +    FKLG K   +VDLPG Y 
Sbjct: 1   ALVGNPNVGKTTLFNALTGARQ----KVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTYS 56

Query: 150 F-AYAKEE 156
              Y+++E
Sbjct: 57  LTPYSEDE 64

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  V +  ++PG+T+   + KL   L L+D PG
Sbjct: 128 NVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPG 172

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
           NVGKSS++N+L R          PG+T+++    L   + L+D PG 
Sbjct: 126 NVGKSSVINSLKRS-RACNVGATPGVTKSMQEVHLDKHVKLLDSPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           +A  G  + GKS++LNAL  +     GV  T+       T+  + L   + LVD PG
Sbjct: 3   LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVI----TVLRYGLLKGVVLVDTPG 55

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 7/40 (17%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT 128
            P +A  GR NVGKS++ N LT +    R    SD PG+T
Sbjct: 3   TPVVAIVGRPNVGKSTLFNRLTGR----RIAIVSDTPGVT 38

Length = 444

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT 128
            P +A  GR NVGKS++ N LT +    R    +D PG+T
Sbjct: 1   KPVVAIVGRPNVGKSTLFNRLTGK----RDAIVADTPGVT 36

Length = 435

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 52  LDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPD-LPEIAFAGRSNVGKSSMLN 110
           L   P+  S+   R   ++    L+    A+ +S F  P  L  +A  GR NVGKSS+LN
Sbjct: 410 LGE-PYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLN 468

Query: 111 ALTRQ 115
            LT +
Sbjct: 469 QLTHE 473

Length = 712

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           +   G  NVGKSS +NAL  ++  ++    PG T+     KL  ++ L D PG
Sbjct: 94  VGVVGLPNVGKSSFINALLNKFK-LKVGSIPGTTKLQQDVKLDKEIYLYDTPG 145

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 7/33 (21%)

Query: 99  GRSNVGKSSMLNALTRQWGVVR---TSDKPGLT 128
           GR NVGKS++ N LT +    R    SD PG+T
Sbjct: 4   GRPNVGKSTLFNRLTGR----RDAIVSDTPGVT 32

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ 115
           +   GR NVGKSS+LNAL  +
Sbjct: 220 VVIIGRPNVGKSSLLNALLGR 240

Length = 454

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
           IA  GR NVGKSS++NA+  +  V+  SD  G T+    I F + G K  L+D
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGRKYVLID 232

Length = 444

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 96  AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPG 147
              G  NVGKS++L+ALT     V  +  P  T   N     F  G  + ++DLPG
Sbjct: 1   GLVGLPNVGKSTLLSALTS--AKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPG 54

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L  +  + +T ++PG+T+   + KLG  L L+D PG
Sbjct: 131 NVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPG 175

Length = 287

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 17/96 (17%)

Query: 95  IAFAGRSNVGKSSMLNALT---RQW-GVVRTSDKPG--LTQTINFFKLGTKLCLVDLPG- 147
              AG+S VGKS++LNAL        G +      G   T  +  F L     L+D PG 
Sbjct: 38  SVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLIDTPGF 97

Query: 148 --YGFAY-AKEEVKDAWEELVSIS----YRNFWSCT 176
              G  +   EE+ + + E   ++    +R+   C 
Sbjct: 98  RELGLWHLDPEELAEYFPEFRELAGQCKFRD---CL 130

Length = 161

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 17/95 (17%)

Query: 96  AFAGRSNVGKSSMLNAL----TRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGY- 148
              G+S VGKS+++NAL     ++ G +      G   T  +  F L     ++D PG+ 
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFR 227

Query: 149 --GFAYA-KEEVKDAWEELVSIS----YRNFWSCT 176
             G A+   E++  A+ E   ++    +R+   CT
Sbjct: 228 SLGLAHLEPEDLVQAFPEFAELARQCKFRD---CT 259

Length = 301

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 7/37 (18%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT 128
           +A  GR NVGKS++ N LT +    R    SD PG+T
Sbjct: 2   VAIVGRPNVGKSTLFNRLTGK----RDAIVSDTPGVT 34

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ 115
           +  AGR NVGKSS+LNAL  +
Sbjct: 218 VVIAGRPNVGKSSLLNALLGE 238

Length = 449

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPG 147
           I   G  NVGKS++LN L      + T  KPG T+       +      K  L+D  G
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISI-TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           + F G  NVGKSS++N L R   V + +  PG T+   +  L  ++ L+D PG
Sbjct: 105 VGFIGYPNVGKSSVINTL-RSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ 115
           +  AG+ NVGKSS+LNAL  +
Sbjct: 6   VVIAGKPNVGKSSLLNALAGR 26

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206726 cd04163, Era, E

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG------TKLCLVDLPG 147
           +A  GR NVGKS++LNAL  Q  +   S KP  T+       G       ++  VD PG
Sbjct: 6   VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRI---RGIYTDDDAQIIFVDTPG 60

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|130988 TIGR01933, hflK, HflK protein

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 98  AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEV 157
           A R  +G S+M + LT     +R   K  L + I+ + LG  +  V+      A   EEV
Sbjct: 95  ALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQS---ARPPEEV 151

Query: 158 KDAWEE 163
           K+A+++
Sbjct: 152 KEAFDD 157

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PMID:8947034,PMID:96367) [SS 8/27/03]. Length = 261

>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only]

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 75  LEFFAAAKVS-SSFPA--PDLPEIAFAGRSNVGKSSMLNALTR 114
           LEF   A+      PA  PDLP I  AG  NVGKSS++  LT 
Sbjct: 148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTT 190

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
COG0218	200	Predicted GTPase [General function prediction only	99.9
COG0486	454	ThdF Predicted GTPase [General function prediction	99.87
COG2262	411	HflX GTPases [General function prediction only]	99.85
PRK11058	426	GTPase HflX; Provisional	99.79
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.78
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.74
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.73
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.69
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
COG1160	444	Predicted GTPases [General function prediction onl	99.66
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.65
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.65
COG1159	298	Era GTPase [General function prediction only]	99.63
KOG0410	410	consensus Predicted GTP binding protein [General f	99.61
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.61
COG1084	346	Predicted GTPase [General function prediction only	99.61
PTZ00258	390	GTP-binding protein; Provisional	99.57
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.54
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.54
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.53
COG1160	444	Predicted GTPases [General function prediction onl	99.51
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.51
PRK09601	364	GTP-binding protein YchF; Reviewed	99.51
COG1161	322	Predicted GTPases [General function prediction onl	99.51
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.49
PRK12297	424	obgE GTPase CgtA; Reviewed	99.48
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.48
PRK12298	390	obgE GTPase CgtA; Reviewed	99.47
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.47
PRK12299	335	obgE GTPase CgtA; Reviewed	99.47
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.47
PRK04213	201	GTP-binding protein; Provisional	99.45
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.45
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.45
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.43
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.43
PRK12296	500	obgE GTPase CgtA; Reviewed	99.43
PRK09602	396	translation-associated GTPase; Reviewed	99.42
KOG2486	320	consensus Predicted GTPase [General function predi	99.42
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.42
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	99.42
COG1163	365	DRG Predicted GTPase [General function prediction	99.41
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.4
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.4
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.39
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.39
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.39
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.39
PRK00089	292	era GTPase Era; Reviewed	99.38
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.38
PRK00093	435	GTP-binding protein Der; Reviewed	99.38
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.38
COG3596	296	Predicted GTPase [General function prediction only	99.37
PRK03003	472	GTP-binding protein Der; Reviewed	99.37
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.37
PRK03003	472	GTP-binding protein Der; Reviewed	99.37
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.36
PRK15494	339	era GTPase Era; Provisional	99.36
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.36
PRK00093	435	GTP-binding protein Der; Reviewed	99.36
PRK12288	347	GTPase RsgA; Reviewed	99.35
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.35
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.34
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.33
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.33
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.33
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.32
PRK12289	352	GTPase RsgA; Reviewed	99.32
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.31
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.3
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	99.29
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.29
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.28
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.28
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.27
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.26
COG1162	301	Predicted GTPases [General function prediction onl	99.25
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	99.23
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.22
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.22
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.22
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.22
PRK13796	365	GTPase YqeH; Provisional	99.21
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.18
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.18
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.17
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.17
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.16
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.14
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.14
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.13
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.12
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.12
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.12
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.12
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.11
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.11
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.11
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.1
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.1
KOG2484	435	consensus GTPase [General function prediction only	99.1
PRK00098	298	GTPase RsgA; Reviewed	99.09
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.09
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.09
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.09
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.08
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.08
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.08
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.08
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.07
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.07
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.06
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.06
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.06
PLN03118	211	Rab family protein; Provisional	99.06
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.06
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.05
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.05
COG0536	369	Obg Predicted GTPase [General function prediction	99.05
PLN00223	181	ADP-ribosylation factor; Provisional	99.05
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.04
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.04
KOG2423	572	consensus Nucleolar GTPase [General function predi	99.04
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.03
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.03
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.02
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.02
cd00881	189	GTP_translation_factor GTP translation factor fami	99.02
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.02
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.02
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.02
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.02
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.01
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.01
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.0
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.99
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.99
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.99
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.99
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.99
PTZ00133	182	ADP-ribosylation factor; Provisional	98.99
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.98
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.98
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.98
PTZ00369	189	Ras-like protein; Provisional	98.98
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.97
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.97
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.96
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.95
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.95
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.94
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.94
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.94
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.94
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.94
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.93
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.93
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.92
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.92
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.92
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.92
PLN03110	216	Rab GTPase; Provisional	98.91
cd04105	203	SR_beta Signal recognition particle receptor, beta	98.91
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.9
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.9
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.9
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.9
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.89
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.89
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.88
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.88
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.87
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.86
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.86
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.86
PRK12317	425	elongation factor 1-alpha; Reviewed	98.85
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.84
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.84
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.84
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.83
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.83
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.83
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.83
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.83
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.82
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.82
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.81
PLN03108	210	Rab family protein; Provisional	98.8
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.8
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.8
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.79
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.78
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.78
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.77
CHL00189	742	infB translation initiation factor 2; Provisional	98.77
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.75
PRK05306	787	infB translation initiation factor IF-2; Validated	98.75
CHL00071	409	tufA elongation factor Tu	98.75
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.75
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.75
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.74
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	98.74
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.74
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.73
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.73
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.73
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.72
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.71
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.71
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.7
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.68
PRK04004	586	translation initiation factor IF-2; Validated	98.68
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.68
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.68
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.68
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.67
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.67
PRK12735	396	elongation factor Tu; Reviewed	98.67
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.66
PLN00023	334	GTP-binding protein; Provisional	98.66
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.65
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.65
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.65
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.65
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.65
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.65
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	98.63
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.62
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.61
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.6
PRK00049	396	elongation factor Tu; Reviewed	98.6
COG1100	219	GTPase SAR1 and related small G proteins [General	98.59
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.56
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	98.55
PLN03127	447	Elongation factor Tu; Provisional	98.54
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.54
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.53
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.53
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.52
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.52
PRK12736	394	elongation factor Tu; Reviewed	98.5
PRK01889	356	GTPase RsgA; Reviewed	98.5
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.49
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.47
PRK00007	693	elongation factor G; Reviewed	98.47
PRK12739	691	elongation factor G; Reviewed	98.47
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.43
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	98.43
PLN03126	478	Elongation factor Tu; Provisional	98.42
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.4
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.4
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.4
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	98.39
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.39
PRK10218	607	GTP-binding protein; Provisional	98.38
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	98.38
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.37
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.36
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.36
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.35
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.33
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.3
COG2229	187	Predicted GTPase [General function prediction only	98.29
PRK05433	600	GTP-binding protein LepA; Provisional	98.29
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	98.28
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	98.25
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.25
KOG0394	210	consensus Ras-related GTPase [General function pre	98.24
PRK13351	687	elongation factor G; Reviewed	98.23
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.22
KOG0090	238	consensus Signal recognition particle receptor, be	98.17
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	98.16
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.15
PTZ00141	446	elongation factor 1- alpha; Provisional	98.11
PTZ00416	836	elongation factor 2; Provisional	98.1
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.07
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.06
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.05
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.04
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.02
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.01
PRK09866	741	hypothetical protein; Provisional	98.0
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.98
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	97.97
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	97.94
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.89
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	97.86
PRK07560	731	elongation factor EF-2; Reviewed	97.85
PRK12740	668	elongation factor G; Reviewed	97.79
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.78
PLN00043	447	elongation factor 1-alpha; Provisional	97.76
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	97.68
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.67
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.67
KOG1145	683	consensus Mitochondrial translation initiation fac	97.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.65
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.63
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	97.63
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.63
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.62
cd03112	158	CobW_like The function of this protein family is u	97.59
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	97.58
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	97.56
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.53
PRK10416	318	signal recognition particle-docking protein FtsY;	97.51
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.5
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	97.49
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.48
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.47
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.45
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	97.44
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	97.42
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.38
PRK14737	186	gmk guanylate kinase; Provisional	97.36
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.35
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.35
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.32
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.32
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	97.31
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	97.29
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.26
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.26
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	97.24
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.23
COG3523	1188	IcmF Type VI protein secretion system component Va	97.22
PRK14738	206	gmk guanylate kinase; Provisional	97.18
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.16
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.15
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.15
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.13
PRK13768	253	GTPase; Provisional	97.1
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.09
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.08
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.05
PRK14974	336	cell division protein FtsY; Provisional	97.04
PRK00300	205	gmk guanylate kinase; Provisional	97.04
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.02
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.99
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.99
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.99
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.98
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.98
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.97
KOG0462	650	consensus Elongation factor-type GTP-binding prote	96.97
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.97
KOG0461	522	consensus Selenocysteine-specific elongation facto	96.96
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.94
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.94
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.93
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.92
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.92
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.92
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.91
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.9
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.9
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.9
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.89
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.88
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.88
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.87
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.86
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.85
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.85
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.85
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.85
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.84
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.84
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.84
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.83
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.82
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.81
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.81
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.8
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.8
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.8
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.8
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.8
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.79
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.79
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.79
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.79
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.79
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.78
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.78
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.78
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.78
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.78
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.78
PRK10908	222	cell division protein FtsE; Provisional	96.77
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.77
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.76
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.76
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.76
PF00004	132	AAA: ATPase family associated with various cellula	96.75
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.75
PLN02772	398	guanylate kinase	96.75
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.75
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.75
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.75
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.75
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.74
COG4988	559	CydD ABC-type transport system involved in cytochr	96.74
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.74
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.74
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.73
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.73
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.73
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.73
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.72
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.72
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.71
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.71
COG1217	603	TypA Predicted membrane GTPase involved in stress	96.71
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	96.71
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	96.7
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.7
smart00382	148	AAA ATPases associated with a variety of cellular	96.69
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.69
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.68
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.68
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.68
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.68
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	96.68
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.68
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.68
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.68
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.68
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	96.67
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.67
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	96.67
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.67
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.67
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.67
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.67
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.66
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.66
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.66
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.66
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.66
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.65
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.65
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.65
TIGR00959	428	ffh signal recognition particle protein. This mode	96.65
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.65
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.65
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.65
cd03246	173	ABCC_Protease_Secretion This family represents the	96.65
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.64
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.64
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	96.64
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.64
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.64
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.63
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.63
PRK10867	433	signal recognition particle protein; Provisional	96.63
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.63
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.63
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	96.63
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.63
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	96.63
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.62
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	96.62
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.62
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.61
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	96.61
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.61
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.6
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.6
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.6
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.6
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.6
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.6
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.6
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.6
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.6
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	96.59
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.59
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	96.59
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	96.59
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	96.59
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	96.59
PRK07261	171	topology modulation protein; Provisional	96.58
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.58
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	96.58
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.58
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.58
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	96.58
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	96.58
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.57
COG4987	573	CydC ABC-type transport system involved in cytochr	96.57

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.90  E-value=2.4e-23  Score=164.88  Aligned_cols=111  Identities=49%  Similarity=0.747  Sum_probs=98.4

Q ss_pred             HHHhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHH
Q 029512           77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE  156 (192)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~  156 (192)
                      ++.++......|....+.|+++|+||||||||||+|++....+.+|.+||.||.++++..+..+.+||.||||++.....
T Consensus         9 f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~   88 (200)
T COG0218           9 FITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKE   88 (200)
T ss_pred             EEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHH
Confidence            34444555667778899999999999999999999999867899999999999999999999999999999999877778


Q ss_pred             HHHHHHHHHh--hhccCceeEEEEEEecCCceE
Q 029512          157 VKDAWEELVS--ISYRNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       157 ~~~~~~~~~~--l~~~~~~~~v~~vvD~s~~~~  187 (192)
                      ..+.|..++.  |..+.++.+++++||++|+-.
T Consensus        89 ~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~  121 (200)
T COG0218          89 VKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK  121 (200)
T ss_pred             HHHHHHHHHHHHHhhchhheEEEEEEECCCCCc
Confidence            8899998888  888888999999999998753

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.87  E-value=6.9e-22  Score=172.72  Aligned_cols=158  Identities=22%  Similarity=0.207  Sum_probs=114.5

Q ss_pred             cCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcccccCCCCCCCCeE
Q 029512           16 IQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEI   95 (192)
Q Consensus        16 ~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   95 (192)
                      +..+.+.+..+...|  |..++++.. .+|+.+|||+|+++.........-...+...--.++..+.+....  ..+.++
T Consensus       146 ~~~l~G~ls~~i~~l--r~~li~~~a-~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il--r~G~kv  220 (454)
T COG0486         146 LRQLQGALSQLINEL--REALLELLA-QVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL--REGLKV  220 (454)
T ss_pred             HHHcCCcHHHHHHHH--HHHHHHHHH-HheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hcCceE
Confidence            344555666777777  778888888 699999999998877655443222222222222233444333332  356799


Q ss_pred             EEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC---hHHHHHHHHHHHhhhc
Q 029512           96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVSISY  169 (192)
Q Consensus        96 ~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~---~~~~~~~~~~~~~l~~  169 (192)
                      +++|+||||||||+|+|++. ..++|++.||||||.-...   .|.++.++||+|+..+..   ..++.+.|..      
T Consensus       221 vIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~------  293 (454)
T COG0486         221 VIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA------  293 (454)
T ss_pred             EEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH------
Confidence            99999999999999999998 6799999999999987655   389999999999987432   3334455444      


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      .+.+|++++|+|++.+
T Consensus       294 i~~ADlvL~v~D~~~~  309 (454)
T COG0486         294 IEEADLVLFVLDASQP  309 (454)
T ss_pred             HHhCCEEEEEEeCCCC
Confidence            4568999999999985

>COG2262 HflX GTPases [General function prediction only]

Probab=99.85  E-value=3.4e-21  Score=165.99  Aligned_cols=169  Identities=21%  Similarity=0.225  Sum_probs=126.8

Q ss_pred             ccccccccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhh--hhhHHHHHhcc--cc
Q 029512            9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIF--RNKLEFFAAAK--VS   84 (192)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~--~~~~~~~~~~~--~~   84 (192)
                      +.+...++|++.+++.|..+|+.+....+  .+++..+..+.|.|   ...+.+++.+..++.  +..++.+...+  .+
T Consensus       110 A~S~EgkLQVeLAqL~Y~lpRl~~~~~~l--~~~GggiG~rGpGE---~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R  184 (411)
T COG2262         110 ARSREGKLQVELAQLRYELPRLVGSGSHL--SRLGGGIGFRGPGE---TQLETDRRRIRRRIAKLKRELENVEKAREPRR  184 (411)
T ss_pred             hccchhhhhhhHHhhhhhhhHhHhhhhhc--ccccCCCCCCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667889999999999999997765554  45577778888887   344566777777773  34444444333  45


Q ss_pred             cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE----eeCCeEEEEECCCCCCCCChHHHHHH
Q 029512           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVKDA  160 (192)
Q Consensus        85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~----~~~~~~~lvDtPG~~~~~~~~~~~~~  160 (192)
                      ..+.+.+.|.|+++||||+|||||+|+|++..  ..+.+..+.|-++..-    ..|..+.+.||.||....+.. +..+
T Consensus       185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~-LV~A  261 (411)
T COG2262         185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP-LVEA  261 (411)
T ss_pred             hhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChH-HHHH
Confidence            55666789999999999999999999999875  6677888877665422    236889999999998866544 3344


Q ss_pred             HHHHHhhhccCceeEEEEEEecCCceE
Q 029512          161 WEELVSISYRNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       161 ~~~~~~l~~~~~~~~v~~vvD~s~~~~  187 (192)
                      |.+-  |++...+|++++|||+|+|+.
T Consensus       262 FksT--LEE~~~aDlllhVVDaSdp~~  286 (411)
T COG2262         262 FKST--LEEVKEADLLLHVVDASDPEI  286 (411)
T ss_pred             HHHH--HHHhhcCCEEEEEeecCChhH
Confidence            4333  778899999999999999953

>PRK11058 GTPase HflX; Provisional

Probab=99.79  E-value=3.5e-19  Score=157.41  Aligned_cols=168  Identities=17%  Similarity=0.208  Sum_probs=113.1

Q ss_pred             ccccccccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhh--hhHHHHHhccc--c
Q 029512            9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAKV--S   84 (192)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~--~~~~~~~~~~~--~   84 (192)
                      +.+...++|++.++++|..+|+.+.  ..++.+++..+..+.|.|.   ..+.+++.+..++..  ..+......+.  +
T Consensus       115 A~t~e~klqvelA~l~y~~prl~~~--~~~l~~~~gg~g~~g~ge~---~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r  189 (426)
T PRK11058        115 ARTHEGKLQVELAQLRHLATRLVRG--WTHLERQKGGIGLRGPGET---QLETDRRLLRNRIVQILSRLERVEKQREQGR  189 (426)
T ss_pred             cCChHHHHHHHHHhhhhhhhhhhcc--ccchhhhcCCCCCCCCChh---HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4566788999999999999999654  3456666666777888763   334445556655532  22222222221  1


Q ss_pred             cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---C-CeEEEEECCCCCCCCChHHHHHH
Q 029512           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDA  160 (192)
Q Consensus        85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~-~~~~lvDtPG~~~~~~~~~~~~~  160 (192)
                      ..+...+.|+|+++|+||||||||+|+|++..  ..+.+.+|+|.++.....   + ..+.++||||+....+.+ +...
T Consensus       190 ~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~--~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~-lve~  266 (426)
T PRK11058        190 RARIKADVPTVSLVGYTNAGKSTLFNRITEAR--VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD-LVAA  266 (426)
T ss_pred             HHhhhcCCCEEEEECCCCCCHHHHHHHHhCCc--eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH-HHHH
Confidence            11222456899999999999999999999974  347888898887754321   3 478999999985432332 2222


Q ss_pred             HHHHHhhhccCceeEEEEEEecCCce
Q 029512          161 WEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       161 ~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      |...  +...+.+|++++|+|+++|+
T Consensus       267 f~~t--l~~~~~ADlIL~VvDaS~~~  290 (426)
T PRK11058        267 FKAT--LQETRQATLLLHVVDAADVR  290 (426)
T ss_pred             HHHH--HHHhhcCCEEEEEEeCCCcc
Confidence            3222  56678899999999999875

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.78  E-value=8e-19  Score=151.68  Aligned_cols=168  Identities=21%  Similarity=0.226  Sum_probs=111.0

Q ss_pred             ccccccccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhh--hhhHHHHHhcc--cc
Q 029512            9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIF--RNKLEFFAAAK--VS   84 (192)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~--~~~~~~~~~~~--~~   84 (192)
                      +.+...++|...+++.|..+++.+..  .++.+....++.++|+|+..   ..+++.+..++.  +..+..+...+  .+
T Consensus       107 a~t~e~klqv~la~l~~~l~r~~~~~--~~l~~~~~~i~~~g~gE~~~---~~~~~~i~~ri~~l~~~L~~~~~~~~~~r  181 (351)
T TIGR03156       107 ARTHEGKLQVELAQLKYLLPRLVGGW--THLSRQGGGIGTRGPGETQL---ETDRRLIRERIAQLKKELEKVEKQRERQR  181 (351)
T ss_pred             ccChHHHHHHHHHhccchhhhhhhhH--HHHHhhcCCCCCCCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566788999999999999997643  23344344555677776322   333455555542  23333332222  22


Q ss_pred             cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHH
Q 029512           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDA  160 (192)
Q Consensus        85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~  160 (192)
                      ..+.+.+.++|+++|+||||||||+|+|++..  ..+.+.+|+|+++....    .+..+.++||||+....+.+ ..+.
T Consensus       182 ~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~-lie~  258 (351)
T TIGR03156       182 RRRKRADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHE-LVAA  258 (351)
T ss_pred             hhhcccCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHH-HHHH
Confidence            23333567899999999999999999999974  67788889888765322    36789999999985432332 2233


Q ss_pred             HHHHHhhhccCceeEEEEEEecCCce
Q 029512          161 WEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       161 ~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      +...  +....++|++++|+|+++++
T Consensus       259 f~~t--le~~~~ADlil~VvD~s~~~  282 (351)
T TIGR03156       259 FRAT--LEEVREADLLLHVVDASDPD  282 (351)
T ss_pred             HHHH--HHHHHhCCEEEEEEECCCCc
Confidence            4333  44567899999999999875

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.74  E-value=1.5e-17  Score=128.36  Aligned_cols=88  Identities=26%  Similarity=0.218  Sum_probs=63.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|+||||||||||+|+|..  +.++++||+|.+.....   .+..+.++|+||+..........+...+++.   
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~---   75 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL---   75 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH---
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh---
Confidence            379999999999999999999985  88999999999987544   3789999999997653222222233333322   


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      ....|++++|+|+++.
T Consensus        76 ~~~~D~ii~VvDa~~l   91 (156)
T PF02421_consen   76 SEKPDLIIVVVDATNL   91 (156)
T ss_dssp             HTSSSEEEEEEEGGGH
T ss_pred             hcCCCEEEEECCCCCH
Confidence            4568999999999864

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.73  E-value=2.6e-17  Score=146.46  Aligned_cols=159  Identities=26%  Similarity=0.259  Sum_probs=105.1

Q ss_pred             ccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHh--hhhhHHHH-HhcccccCCCCCC
Q 029512           15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--FRNKLEFF-AAAKVSSSFPAPD   91 (192)
Q Consensus        15 ~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~~~~~~   91 (192)
                      ++..+.+.++.....|  |.+++.+.. .+++.+|||+|+.+...   ++.+..++  .+.++..+ .........  ..
T Consensus       143 al~~l~G~l~~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~~~---~~~i~~~i~~l~~~l~~l~~~~~~~~~~--~~  214 (449)
T PRK05291        143 ALRQLQGALSKLINEL--REELLELLA-LVEAAIDFPEEDIEFLS---DEKILEKLEELIAELEALLASARQGEIL--RE  214 (449)
T ss_pred             HHHhcCcHHHHHHHHH--HHHHHHHHH-HheEEccCCCCCccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc
Confidence            4555666777777777  667888776 79999999998765433   23333333  22233322 222222111  23


Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHH-HHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDA-WEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~-~~~~~~l  167 (192)
                      .++|+++|++|+|||||+|+|++. ..+.+++.+|+|++....   ..+.++.++||||+....  +.+... +...  +
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~gi~~~--~  289 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKIGIERS--R  289 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHHHHHHH--H
Confidence            579999999999999999999997 456788999999886532   247789999999986522  111110 1111  3


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      ...+.+|++++|+|++++.
T Consensus       290 ~~~~~aD~il~VvD~s~~~  308 (449)
T PRK05291        290 EAIEEADLVLLVLDASEPL  308 (449)
T ss_pred             HHHHhCCEEEEEecCCCCC
Confidence            4456789999999998764

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.69  E-value=3.5e-16  Score=139.00  Aligned_cols=159  Identities=19%  Similarity=0.133  Sum_probs=102.7

Q ss_pred             ccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcccccCCCCCCCCe
Q 029512           15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPE   94 (192)
Q Consensus        15 ~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (192)
                      ++....+.+......|  |..++++.. .+++.+|||+|+.+.  ..-...+.. +...-..++... ....  .....+
T Consensus       135 A~~~l~G~ls~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~--~~~~~~l~~-~~~~l~~ll~~~-~~~~--~~~g~k  205 (442)
T TIGR00450       135 ALNKLAGELDQKIEAI--RKSLLQLLA-QVEVNIDYEEDDDEQ--DSLNQLLLS-IIAELKDILNSY-KLEK--LDDGFK  205 (442)
T ss_pred             HHHhcCcHHHHHHHHH--HHHHHHHHH-HeeEECCcCCCCccH--HHHHHHHHH-HHHHHHHHHHHH-HHHH--hhcCCE
Confidence            4445666666777777  778888888 799999999986432  111112211 111111222222 2111  134679


Q ss_pred             EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      |+++|.+|||||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+....  +... .+.--......+
T Consensus       206 VvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie-~~gi~~~~~~~~  281 (442)
T TIGR00450       206 LAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVE-RLGIEKSFKAIK  281 (442)
T ss_pred             EEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHH-HHHHHHHHHHHh
Confidence            999999999999999999997 4577899999999875433   37789999999987532  1111 111001133456


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|++.+.
T Consensus       282 ~aD~il~V~D~s~~~  296 (442)
T TIGR00450       282 QADLVIYVLDASQPL  296 (442)
T ss_pred             hCCEEEEEEECCCCC
Confidence            789999999998654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=3.6e-16  Score=114.07  Aligned_cols=89  Identities=25%  Similarity=0.351  Sum_probs=67.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|+|||||+|+|++. ....++..+++|++.....   .+..+.++||||+..........+.+..+  +...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~--~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKF--LEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHH--HHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHH--HHHH
Confidence            5899999999999999999996 4678999999999884432   36778999999998754433322233333  3445


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                      ..+|++++|+|++++
T Consensus        78 ~~~d~ii~vv~~~~~   92 (116)
T PF01926_consen   78 SKSDLIIYVVDASNP   92 (116)
T ss_dssp             CTESEEEEEEETTSH
T ss_pred             HHCCEEEEEEECCCC
Confidence            788999999998763

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.66  E-value=3.2e-16  Score=137.00  Aligned_cols=89  Identities=28%  Similarity=0.382  Sum_probs=68.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      +.|+|||+||||||||+|+|++. +.+.|++.||+|||..+..   .+..+.++||+|+..... +.+...+..-. +..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~i~~Qa-~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQELIREQA-LIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHHHHHHH-HHH
Confidence            78999999999999999999998 7899999999999986544   478899999999975332 22222111110 344


Q ss_pred             cCceeEEEEEEecCC
Q 029512          170 RNFWSCTCFLIYIFY  184 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~  184 (192)
                      ...+|++++|+|++.
T Consensus        81 i~eADvilfvVD~~~   95 (444)
T COG1160          81 IEEADVILFVVDGRE   95 (444)
T ss_pred             HHhCCEEEEEEeCCC
Confidence            567899999999864

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.65  E-value=2.4e-15  Score=118.41  Aligned_cols=112  Identities=47%  Similarity=0.716  Sum_probs=82.5

Q ss_pred             hHHHHHhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512           74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~  153 (192)
                      +..+..++......+....++|+++|.+|+|||||+|+|++......+++.+|+|++..++..+..+.+|||||+.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~   85 (196)
T PRK00454          6 NAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKV   85 (196)
T ss_pred             HHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCC
Confidence            34444444434444556778999999999999999999999733567788889999988777778999999999876443


Q ss_pred             hHHHHHHHHHHHh--hhccCceeEEEEEEecCCc
Q 029512          154 KEEVKDAWEELVS--ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       154 ~~~~~~~~~~~~~--l~~~~~~~~v~~vvD~s~~  185 (192)
                      .......|..+..  +.....++++++++|++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~  119 (196)
T PRK00454         86 SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP  119 (196)
T ss_pred             CchHHHHHHHHHHHHHHhCccceEEEEEEecCCC
Confidence            3333445544444  5666777889999997764

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.65  E-value=1.2e-15  Score=119.42  Aligned_cols=98  Identities=49%  Similarity=0.771  Sum_probs=75.9

Q ss_pred             CCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      .++...++|+++|.+|+|||||+|+|++......+++.+|+|+++.++..+..+.+|||||++...........|..+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            44566789999999999999999999997435667788899999887766678999999999775444444455555443


Q ss_pred             --hhccCceeEEEEEEecCC
Q 029512          167 --ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 --l~~~~~~~~v~~vvD~s~  184 (192)
                        +.....++++++|+|++.
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~  112 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRH  112 (179)
T ss_pred             HHHHhChhhcEEEEEecCCC
Confidence              455567889999999876

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1159 Era GTPase [General function prediction only]

Probab=99.63  E-value=1.6e-15  Score=126.46  Aligned_cols=88  Identities=26%  Similarity=0.212  Sum_probs=67.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .-|+++|+||||||||+|+|.|. +++.+|+.+.|||.....   ....++.++||||+..+..  .+-+.+.... .+.
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~--~l~~~m~~~a-~~s   82 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH--ALGELMNKAA-RSA   82 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch--HHHHHHHHHH-HHH
Confidence            37899999999999999999999 799999999999986432   2478899999999987522  1111111110 345


Q ss_pred             cCceeEEEEEEecCC
Q 029512          170 RNFWSCTCFLIYIFY  184 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~  184 (192)
                      ...+|++++|+|+.+
T Consensus        83 l~dvDlilfvvd~~~   97 (298)
T COG1159          83 LKDVDLILFVVDADE   97 (298)
T ss_pred             hccCcEEEEEEeccc
Confidence            567899999999987

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.61  E-value=1.2e-15  Score=128.34  Aligned_cols=170  Identities=19%  Similarity=0.170  Sum_probs=105.2

Q ss_pred             cccccccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcc-cccCCC
Q 029512           10 NAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAK-VSSSFP   88 (192)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~   88 (192)
                      .+....+|.-.+.+||..+++  ...+-++.+..... +-.+.|.+-........++.+.-.++.++.....+ .+..+.
T Consensus        98 ~T~earlqvalAempy~~~rl--~r~~~hl~r~~g~~-v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~  174 (410)
T KOG0410|consen   98 VTAEARLQVALAEMPYVGGRL--ERELQHLRRQSGGQ-VKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKRQRRVGRE  174 (410)
T ss_pred             hhHHHHHhhhhhcCccccchH--HHHHHHHHhcCCCc-ccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            345566778888889988888  43444454433332 33333211111111111222222333344333322 233444


Q ss_pred             CCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE----EEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        89 ~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~----~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ....+.|++|||||+|||||+|+|++..  ....+.-+.|-|+.    ..+.|..+.+.||-||....+ -.+..+|++-
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aa--l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP-~~LvaAF~AT  251 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAA--LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP-IQLVAAFQAT  251 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhh--cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCc-HHHHHHHHHH
Confidence            5678899999999999999999999653  33445556665553    444688999999999986443 3344444444


Q ss_pred             HhhhccCceeEEEEEEecCCceE
Q 029512          165 VSISYRNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s~~~~  187 (192)
                        |.+...+|++++|+|.|+|++
T Consensus       252 --LeeVaeadlllHvvDiShP~a  272 (410)
T KOG0410|consen  252 --LEEVAEADLLLHVVDISHPNA  272 (410)
T ss_pred             --HHHHhhcceEEEEeecCCccH
Confidence              667888999999999999985

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=1.6e-15  Score=133.19  Aligned_cols=139  Identities=22%  Similarity=0.177  Sum_probs=89.3

Q ss_pred             CCChhhhhhccceeecCCCCCCCCCCChHH--HHHHHHHhhhhhHHHHHhcccccCCCCCCCCeEEEEecCCCcHHHHHH
Q 029512           33 RRRPIELRRAGYNIELSAPLDNIPFSTSSE--RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLN  110 (192)
Q Consensus        33 r~~li~~~~~~~~~~l~~~~e~i~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin  110 (192)
                      |..++++.+ ++++.++|.++.-.......  ...... +.......+.........  ..++.|+|+|+||||||||+|
T Consensus       211 r~~lIe~~a-~l~a~idf~e~~~l~~~~t~~~~~~~~~-l~d~v~s~l~~~~~~e~l--q~gl~iaIvGrPNvGKSSLlN  286 (531)
T KOG1191|consen  211 RKILIEALA-GLEARIDFEEERPLEEIETVEIFIESLS-LLDDVLSHLNKADEIERL--QSGLQIAIVGRPNVGKSSLLN  286 (531)
T ss_pred             HHHHHHHHh-ccceeechhhcCchhhccchhhhhHHHH-HHHHHHHHHHhhhhHHHh--hcCCeEEEEcCCCCCHHHHHH
Confidence            456677777 79999998765321111111  111111 111112222222222222  245899999999999999999


Q ss_pred             HHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCC-CC---ChHHHHHHHHHHHhhhccCceeEEEEEEec
Q 029512          111 ALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGF-AY---AKEEVKDAWEELVSISYRNFWSCTCFLIYI  182 (192)
Q Consensus       111 ~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~-~~---~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~  182 (192)
                      +|++. ..+.|++.+|+|||..   +...|.++.|+||+|+.. ..   ....+.++      ......+|++++|+|+
T Consensus       287 aL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA------~k~~~~advi~~vvda  358 (531)
T KOG1191|consen  287 ALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA------RKRIERADVILLVVDA  358 (531)
T ss_pred             HHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH------HHHHhhcCEEEEEecc
Confidence            99998 7899999999999874   333589999999999987 21   12222333      3334568999999999

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.61  E-value=3.9e-15  Score=125.51  Aligned_cols=106  Identities=28%  Similarity=0.336  Sum_probs=79.5

Q ss_pred             HHHHHhcc-cccCCCC--CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCC
Q 029512           75 LEFFAAAK-VSSSFPA--PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGY  148 (192)
Q Consensus        75 ~~~~~~~~-~~~~~~~--~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~  148 (192)
                      +.++...+ ...++|.  ++.++|+++|+||||||||+++|++..  ..+.++|+||+..+.++.   +..++++||||+
T Consensus       148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGl  225 (346)
T COG1084         148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGL  225 (346)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcc
Confidence            44444433 2334443  578999999999999999999999986  789999999999987764   458999999999


Q ss_pred             CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .+....+-.....+++..|.+..  +.|++++|.|-
T Consensus       226 LDRPl~ErN~IE~qAi~AL~hl~--~~IlF~~D~Se  259 (346)
T COG1084         226 LDRPLEERNEIERQAILALRHLA--GVILFLFDPSE  259 (346)
T ss_pred             cCCChHHhcHHHHHHHHHHHHhc--CeEEEEEcCcc
Confidence            88655554444555665554433  77999999874

>PTZ00258 GTP-binding protein; Provisional

Probab=99.57  E-value=8.8e-15  Score=127.68  Aligned_cols=91  Identities=23%  Similarity=0.238  Sum_probs=69.6

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------------------CCeEEEEECCCCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG  149 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~lvDtPG~~  149 (192)
                      ....+|+|||.||||||||+|+|++..  ..++++||+|++++....                    +.++.++||||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            456799999999999999999999974  689999999998875442                    2259999999997


Q ss_pred             CCCC-hHHHHHHHHHHHhhhccCceeEEEEEEecCCceE
Q 029512          150 FAYA-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       150 ~~~~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~  187 (192)
                      .... .+.+.+.+     +...+.+|++++|||++..+.
T Consensus        97 ~ga~~g~gLg~~f-----L~~Ir~aD~il~VVd~f~d~~  130 (390)
T PTZ00258         97 KGASEGEGLGNAF-----LSHIRAVDGIYHVVRAFEDED  130 (390)
T ss_pred             cCCcchhHHHHHH-----HHHHHHCCEEEEEEeCCCCCC
Confidence            6322 23333322     456678999999999975443

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.54  E-value=5.4e-14  Score=111.81  Aligned_cols=90  Identities=13%  Similarity=0.079  Sum_probs=63.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l~~  169 (192)
                      +|+++|.||+|||||+|+|+|..........+++|++++...   .+..+.++||||+.+... .+...+.+.... ...
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~-~~~   80 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCL-SLS   80 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHH-Hhc
Confidence            799999999999999999999843222223567888876543   478899999999987533 333333322222 223


Q ss_pred             cCceeEEEEEEecCC
Q 029512          170 RNFWSCTCFLIYIFY  184 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~  184 (192)
                      ...++++++|+|+.+
T Consensus        81 ~~g~~~illVi~~~~   95 (196)
T cd01852          81 APGPHAFLLVVPLGR   95 (196)
T ss_pred             CCCCEEEEEEEECCC
Confidence            467899999999865

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01900 YchF YchF subfamily

Probab=99.54  E-value=1.2e-14  Score=121.71  Aligned_cols=85  Identities=24%  Similarity=0.280  Sum_probs=64.9

Q ss_pred             EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---C-----------------CeEEEEECCCCCCCCC-
Q 029512           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGFAYA-  153 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~-----------------~~~~lvDtPG~~~~~~-  153 (192)
                      |++||.||||||||+|+|++..  ..++++||+|++++....   +                 ..+.++|+||+..... 
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            5899999999999999999984  488999999998764331   1                 1499999999976322 


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+...+     +.+.+.+|++++|||++..+
T Consensus        79 ~~glg~~f-----L~~i~~~D~li~VV~~f~d~  106 (274)
T cd01900          79 GEGLGNKF-----LSHIREVDAIAHVVRCFEDD  106 (274)
T ss_pred             hhHHHHHH-----HHHHHhCCEEEEEEeCcCCC
Confidence            33343333     55667899999999997543

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR00436 era GTP-binding protein Era

Probab=99.53  E-value=5.5e-14  Score=117.32  Aligned_cols=88  Identities=26%  Similarity=0.209  Sum_probs=64.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHH-HHHHhhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAW-EELVSISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~-~~~~~l~~  169 (192)
                      .|+++|+||||||||+|+|++. ..+.+++.+++|++....   ..+.++.++||||+.....  .+...+ ...  ...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~l~~~~~~~~--~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--SLNRLMMKEA--RSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--hHHHHHHHHH--HHH
Confidence            6899999999999999999998 678889999999975422   2356799999999876421  111111 111  233


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      ...+|++++|+|++.+.
T Consensus        77 l~~aDvvl~VvD~~~~~   93 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWN   93 (270)
T ss_pred             HhhCCEEEEEEECCCCC
Confidence            45789999999998653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.51  E-value=1.7e-14  Score=126.28  Aligned_cols=95  Identities=27%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+++++|.||+|||||+|+|+|. +.+.+++.+|+|+|.-   +.+.+..+.++||+|+.....-.+..+.++....+
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            4589999999999999999999998 6799999999999874   44568999999999997633222211222222225


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      .....++.+++|+|++.+.
T Consensus       256 ~aI~~a~vvllviDa~~~~  274 (444)
T COG1160         256 KAIERADVVLLVIDATEGI  274 (444)
T ss_pred             hHHhhcCEEEEEEECCCCc
Confidence            5566789999999998763

>cd01858 NGP_1 NGP-1

Probab=99.51  E-value=4.6e-14  Score=108.47  Aligned_cols=57  Identities=33%  Similarity=0.588  Sum_probs=51.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~  148 (192)
                      ...+|+++|.||||||||+|+|.+. ....++..+|+|++.+++..+..+.++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence            3468899999999999999999998 56889999999999998888888999999996

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.51  E-value=5e-14  Score=121.82  Aligned_cols=86  Identities=21%  Similarity=0.238  Sum_probs=66.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--e-C-----------------CeEEEEECCCCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGFAY  152 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~-~-----------------~~~~lvDtPG~~~~~  152 (192)
                      .+|+|+|.||||||||+|+|++..  +.++++||+|++++...  . +                 ..+.++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            589999999999999999999984  78899999999886432  1 1                 258999999997632


Q ss_pred             -ChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          153 -AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       153 -~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                       ..+.+.+.+     +.+.+.+|++++|||++..
T Consensus        81 ~~g~glg~~f-----L~~i~~aD~li~VVd~f~d  109 (364)
T PRK09601         81 SKGEGLGNQF-----LANIREVDAIVHVVRCFED  109 (364)
T ss_pred             ChHHHHHHHH-----HHHHHhCCEEEEEEeCCcc
Confidence             223333333     5567789999999999743

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.51  E-value=1.3e-13  Score=118.04  Aligned_cols=139  Identities=22%  Similarity=0.262  Sum_probs=87.1

Q ss_pred             cccccCCCCcccchhhhhhcCCCChhhhhhccceeecC------C-CCC-CC-CC-CChH---HHHHHHHHhhhhhHHHH
Q 029512           12 QFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELS------A-PLD-NI-PF-STSS---ERERIEENIFRNKLEFF   78 (192)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~------~-~~e-~i-~~-~~~~---~~~~i~~~~~~~~~~~~   78 (192)
                      -.++-.|.+++++.+.+...++..++.+++.++--...      . ..+ .. +. ....   ....+...+..-.....
T Consensus        41 vvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i  120 (322)
T COG1161          41 VVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKI  120 (322)
T ss_pred             EEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHHHHHHH
Confidence            35677899999999999999988877777754321000      0 000 00 00 0000   00011100000000111


Q ss_pred             HhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512           79 AAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        79 ~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~  153 (192)
                      +.  ...........+++++|.||||||||||+|++. ..+.+++.||+|+..++...+..+.|+||||+..+..
T Consensus       121 ~~--~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~  192 (322)
T COG1161         121 KR--LKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKF  192 (322)
T ss_pred             HH--HhhcCCCccceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCc
Confidence            11  111111223468999999999999999999998 6799999999999999999999999999999987543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.49  E-value=7.4e-14  Score=109.51  Aligned_cols=57  Identities=33%  Similarity=0.545  Sum_probs=52.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~  148 (192)
                      ...+++++|.||+|||||||+|++. ..+.+++.||+|++.+++..+..+.++||||+
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence            4579999999999999999999998 56789999999999999888889999999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.48  E-value=1.9e-13  Score=120.70  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=66.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCC-CChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFA-YAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~-~~~~~~~~~~~~~~~l~  168 (192)
                      .|+|+|.||||||||||+|++..  ..+++++++|..++....    +..+.++||||+... .....+...|     +.
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~f-----Lr  232 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQF-----LR  232 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHH-----HH
Confidence            89999999999999999999974  557889999999886543    578999999999752 2222232222     45


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      +...++++++|+|++..
T Consensus       233 hier~~llI~VID~s~~  249 (424)
T PRK12297        233 HIERTRVIVHVIDMSGS  249 (424)
T ss_pred             HHhhCCEEEEEEeCCcc
Confidence            56678999999999754

>cd01878 HflX HflX subfamily

Probab=99.48  E-value=4.4e-13  Score=106.64  Aligned_cols=92  Identities=20%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eC-CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~-~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      .+.++|+++|++|||||||+|+|++..  ..+.+.++.|.+.....   .+ ..+.+|||||+....... ....+... 
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~-  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ-LVEAFRST-  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH-HHHHHHHH-
Confidence            456899999999999999999999973  34445556665543222   23 389999999986543332 22223322 


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                       +.....+|++++|+|++++.
T Consensus       115 -~~~~~~~d~ii~v~D~~~~~  134 (204)
T cd01878         115 -LEEVAEADLLLHVVDASDPD  134 (204)
T ss_pred             -HHHHhcCCeEEEEEECCCCC
Confidence             23345789999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.47  E-value=2e-13  Score=119.64  Aligned_cols=83  Identities=19%  Similarity=0.217  Sum_probs=64.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCCh-HHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAK-EEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~-~~~~~~~~~~~~l~  168 (192)
                      .|+|||.||||||||+|+|++..  ..++++|++|+.+.....    +..+.++||||+...... ..+...   +  +.
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~---~--l~  233 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIR---F--LK  233 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHH---H--HH
Confidence            89999999999999999999974  588999999999876543    346999999999763221 222222   2  34


Q ss_pred             ccCceeEEEEEEecC
Q 029512          169 YRNFWSCTCFLIYIF  183 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s  183 (192)
                      +...++++++|+|++
T Consensus       234 ~i~radvlL~VVD~s  248 (390)
T PRK12298        234 HLERCRVLLHLIDIA  248 (390)
T ss_pred             HHHhCCEEEEEeccC
Confidence            566789999999987

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.47  E-value=5.6e-13  Score=100.88  Aligned_cols=92  Identities=51%  Similarity=0.767  Sum_probs=69.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh--hhccC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRN  171 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~--l~~~~  171 (192)
                      .|+++|.+|+|||||+|+|++.......++.+++|.....+.....+.++||||++...........+.....  +....
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            3789999999999999999954345677788888888877777779999999999875433333334444433  45567


Q ss_pred             ceeEEEEEEecCCc
Q 029512          172 FWSCTCFLIYIFYT  185 (192)
Q Consensus       172 ~~~~v~~vvD~s~~  185 (192)
                      +++.+++++|...+
T Consensus        81 ~~~~~~~v~d~~~~   94 (170)
T cd01876          81 NLKGVVLLIDSRHG   94 (170)
T ss_pred             hhhEEEEEEEcCcC
Confidence            88999999998754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.47  E-value=2.1e-13  Score=117.30  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=67.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCC-ChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAY-AKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~-~~~~~~~~~~~~~~  166 (192)
                      ...|+|||.||||||||+|+|++..  ..+++++++|..++...    .+..+.++||||+.... ....+...|     
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~f-----  230 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRF-----  230 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHH-----
Confidence            3588999999999999999999874  56889999999987543    24679999999997632 222333333     


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      +.+.+.++++++|+|+++++
T Consensus       231 lrhie~a~vlI~ViD~s~~~  250 (335)
T PRK12299        231 LKHIERTRLLLHLVDIEAVD  250 (335)
T ss_pred             HHHhhhcCEEEEEEcCCCCC
Confidence            44566789999999998754

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=7.2e-14  Score=119.95  Aligned_cols=92  Identities=23%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---------------------CCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---------------------~~~~~lvDtPG~~~  150 (192)
                      ..+++|||.||||||||+|+|+...  +..+++|+||.+++....                     ...+.++|.+|+..
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            4689999999999999999999984  888999999999874321                     13689999999976


Q ss_pred             -CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEEE
Q 029512          151 -AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIIL  190 (192)
Q Consensus       151 -~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~~  190 (192)
                       +...+++.+.|     |.+.+.+|.+++||||+..+.+.+
T Consensus        80 GAs~GeGLGNkF-----L~~IRevdaI~hVVr~f~d~di~h  115 (372)
T COG0012          80 GASKGEGLGNKF-----LDNIREVDAIIHVVRCFGDTDIEH  115 (372)
T ss_pred             CcccCCCcchHH-----HHhhhhcCeEEEEEEecCCCcccC
Confidence             66677888887     888899999999999997776544

>PRK04213 GTP-binding protein; Provisional

Probab=99.45  E-value=7.3e-13  Score=105.04  Aligned_cols=90  Identities=34%  Similarity=0.576  Sum_probs=64.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC-----hHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-----KEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~-----~~~~~~~~~~~~  165 (192)
                      ..++|+++|.+|||||||+|+|++..  ..++..+|+|++......+ .+.+|||||++....     .+.....+..+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI   84 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence            45799999999999999999999873  4567788999887655545 799999999865221     222222222221


Q ss_pred             hhhccCceeEEEEEEecCC
Q 029512          166 SISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~  184 (192)
                       ......++++++|+|++.
T Consensus        85 -~~~~~~~~~vi~v~d~~~  102 (201)
T PRK04213         85 -EDNADRILAAVLVVDGKS  102 (201)
T ss_pred             -HhhhhhheEEEEEEeCcc
Confidence             124466789999999864

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.45  E-value=9.8e-13  Score=108.88  Aligned_cols=91  Identities=19%  Similarity=0.153  Sum_probs=62.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~  166 (192)
                      ...+|+++|.+|+|||||+|+|+|. ....++...++|+....+.   .+..+.+|||||+.+... .......+..+..
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~  108 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR  108 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence            4579999999999999999999998 5566777777887776544   367899999999987532 1112222333332


Q ss_pred             hhccCceeEEEEEEec
Q 029512          167 ISYRNFWSCTCFLIYI  182 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~  182 (192)
                      +......+.++++...
T Consensus       109 ~l~~~~idvIL~V~rl  124 (249)
T cd01853         109 YLKKKTPDVVLYVDRL  124 (249)
T ss_pred             HHhccCCCEEEEEEcC
Confidence            2233456777777543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.45  E-value=5.1e-13  Score=121.69  Aligned_cols=87  Identities=26%  Similarity=0.329  Sum_probs=67.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCC--CCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGF--AYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~--~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|+||||||||+|+|+|..  +.+++.||+|.+.....   .+..+.++|.||..+  +.+.|+  +.-.+++ 
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE--~Var~~l-   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE--KVARDFL-   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH--HHHHHHH-
Confidence            3479999999999999999999986  89999999999987554   477899999999876  333332  2222332 


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                        .....|+++.|+|++.-
T Consensus        78 --l~~~~D~ivnVvDAtnL   94 (653)
T COG0370          78 --LEGKPDLIVNVVDATNL   94 (653)
T ss_pred             --hcCCCCEEEEEcccchH
Confidence              24667999999999754

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.43  E-value=1.3e-13  Score=121.78  Aligned_cols=60  Identities=38%  Similarity=0.599  Sum_probs=56.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~  152 (192)
                      ..+|++||+|||||||+||+|.|. +...|+.+||.|++.|...+...+.|+||||+.++.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPS  373 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPS  373 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCccccC
Confidence            579999999999999999999999 678999999999999999999999999999998753

>cd01898 Obg Obg subfamily

Probab=99.43  E-value=3.1e-13  Score=103.64  Aligned_cols=85  Identities=18%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCC-eEEEEECCCCCCCCCh-HHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAYAK-EEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~-~~~lvDtPG~~~~~~~-~~~~~~~~~~~~l~  168 (192)
                      .|+++|.+|||||||+|+|++..  ..++..+++|+++....   .+. .+.++||||+...... .....   .+  +.
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~---~~--~~   74 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGH---RF--LR   74 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchH---HH--HH
Confidence            58999999999999999999863  46777788887754322   244 8999999998542111 11111   12  22


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.+|++++|+|++++
T Consensus        75 ~~~~~d~vi~v~D~~~~   91 (170)
T cd01898          75 HIERTRLLLHVIDLSGD   91 (170)
T ss_pred             HHHhCCEEEEEEecCCC
Confidence            33468999999999887

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.43  E-value=4.8e-13  Score=120.02  Aligned_cols=86  Identities=17%  Similarity=0.208  Sum_probs=65.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCC-hHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA-KEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l  167 (192)
                      ...|+|||.||||||||||+|++..  ..++++|++|++++....   +..+.++||||+..... ...+...   +  +
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~---f--L  231 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLD---F--L  231 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHH---H--H
Confidence            3589999999999999999999974  457899999999875543   56899999999975222 2222222   2  4


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                      .+...++++++|+|++.
T Consensus       232 rhieradvLv~VVD~s~  248 (500)
T PRK12296        232 RHIERCAVLVHVVDCAT  248 (500)
T ss_pred             HHHHhcCEEEEEECCcc
Confidence            55677899999999975

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.42  E-value=5.1e-13  Score=117.24  Aligned_cols=85  Identities=20%  Similarity=0.121  Sum_probs=65.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---------------------------eCCeEEEEEC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL  145 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---------------------------~~~~~~lvDt  145 (192)
                      .+|+|+|.||||||||+|+|++..  ..+++++|+|.+++...                           ...++.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            489999999999999999999974  56789999998876532                           1245789999


Q ss_pred             CCCCCC-CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          146 PGYGFA-YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       146 PG~~~~-~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ||+... .....+.+.+     +.+.+.+|++++|+|++.
T Consensus        80 aGl~~ga~~g~glg~~f-----L~~ir~ad~ll~Vvd~~~  114 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQF-----LDDLRQADALIHVVDASG  114 (396)
T ss_pred             CCcCCCccchhhHHHHH-----HHHHHHCCEEEEEEeCCC
Confidence            998652 2233343333     566778999999999983

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.42  E-value=4.3e-13  Score=111.02  Aligned_cols=100  Identities=40%  Similarity=0.555  Sum_probs=83.7

Q ss_pred             CCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        86 ~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ..|+...+++++.|.+|+|||||+|.++..+..+..+. .+|.|+..+.+..+..++++|.|||+.+.-..+..+.|..+
T Consensus       130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence            34556778999999999999999999998865555554 88999999999999999999999977755555555668777


Q ss_pred             Hh--hhccCceeEEEEEEecCCc
Q 029512          165 VS--ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~--l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..  +.+++++..+++++|++.+
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~  232 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVP  232 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCC
Confidence            66  7889999999999999865

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.42  E-value=7.8e-13  Score=110.86  Aligned_cols=94  Identities=21%  Similarity=0.148  Sum_probs=70.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHh-
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS-  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~-  166 (192)
                      .-..|+++|.||||||||.|.+.|. +++.++....||+......   ...++.++||||+........-. ....++. 
T Consensus        71 k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~-l~~s~lq~  148 (379)
T KOG1423|consen   71 KSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHH-LMMSVLQN  148 (379)
T ss_pred             eEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHH-HHHHhhhC
Confidence            3468999999999999999999999 7899999999998865443   36789999999998643322111 1112222 


Q ss_pred             -hhccCceeEEEEEEecCCce
Q 029512          167 -ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 -l~~~~~~~~v~~vvD~s~~~  186 (192)
                       .....++|.|++|+|++.+-
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr  169 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATR  169 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCc
Confidence             44567899999999999543

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.42  E-value=3.9e-13  Score=113.83  Aligned_cols=95  Identities=25%  Similarity=0.244  Sum_probs=80.1

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------------------CCeEEEEECCCCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG  149 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~lvDtPG~~  149 (192)
                      .+.+++++||.||+||||++|+|+...  +.++++|+||.+++....                    ...+.++|.+|+.
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv   95 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV   95 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence            356799999999999999999999984  459999999999875432                    2468999999987


Q ss_pred             C-CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEEEe
Q 029512          150 F-AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILY  191 (192)
Q Consensus       150 ~-~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~~~  191 (192)
                      . +....++.+.|     |.+.+.+|.+++||+|+.+..++++
T Consensus        96 kGAs~G~GLGN~F-----Ls~iR~vDaifhVVr~f~d~di~hv  133 (391)
T KOG1491|consen   96 KGASAGEGLGNKF-----LSHIRHVDAIFHVVRAFEDTDIIHV  133 (391)
T ss_pred             cCcccCcCchHHH-----HHhhhhccceeEEEEecCcccceec
Confidence            6 56667788887     8889999999999999998887763

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.41  E-value=6.7e-13  Score=111.97  Aligned_cols=91  Identities=23%  Similarity=0.233  Sum_probs=73.0

Q ss_pred             CCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCC-hHH-HHHHHH
Q 029512           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA-KEE-VKDAWE  162 (192)
Q Consensus        88 ~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~-~~~-~~~~~~  162 (192)
                      ++.+..+++|||.|++|||||+|.|++..  ..++++++||..+.   ..+.|..++++|+||+....+ ... -.+.  
T Consensus        59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~v--  134 (365)
T COG1163          59 KKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQV--  134 (365)
T ss_pred             eccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCccee--
Confidence            45677899999999999999999999986  78999999999874   555799999999999876222 111 1122  


Q ss_pred             HHHhhhccCceeEEEEEEecCCce
Q 029512          163 ELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       163 ~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                          +..++++|++++|+|...+.
T Consensus       135 ----lsv~R~ADlIiiVld~~~~~  154 (365)
T COG1163         135 ----LSVARNADLIIIVLDVFEDP  154 (365)
T ss_pred             ----eeeeccCCEEEEEEecCCCh
Confidence                67789999999999997543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.40  E-value=7.8e-13  Score=111.49  Aligned_cols=62  Identities=34%  Similarity=0.604  Sum_probs=55.6

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~  152 (192)
                      ....+++++|.||||||||+|+|++. ..+.+++.||+|++.++...+..+.++||||+..+.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~  180 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK  180 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence            34579999999999999999999998 567889999999999998888899999999997754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.40  E-value=3.7e-12  Score=95.71  Aligned_cols=90  Identities=27%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|+|||||+|+|++. ....+++.+++|++.....   .+..+.++||||+......-. ...+...  ...
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-~~~~~~~--~~~   77 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE-KIGIERA--REA   77 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH-HHHHHHH--HHH
Confidence            48999999999999999999997 4566778889888765332   356899999999876332211 0111111  223


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      ...++++++|+|++.+.
T Consensus        78 ~~~~~~~v~v~d~~~~~   94 (157)
T cd04164          78 IEEADLVLFVIDASRGL   94 (157)
T ss_pred             HhhCCEEEEEEECCCCC
Confidence            45689999999998543

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01895 EngA2 EngA2 subfamily

Probab=99.39  E-value=2.1e-12  Score=98.33  Aligned_cols=93  Identities=30%  Similarity=0.250  Sum_probs=64.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .++|+++|.+|+|||||+|+|++. .....++.+++|++..   ....+..+.+|||||+..........+.+.....+.
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            468999999999999999999987 4455667777776653   223467799999999876432221111121111133


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ....+|++++|+|++.+
T Consensus        81 ~~~~~d~vi~v~d~~~~   97 (174)
T cd01895          81 AIERADVVLLVIDATEG   97 (174)
T ss_pred             HHhhcCeEEEEEeCCCC
Confidence            45678999999999776

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.39  E-value=1.9e-12  Score=99.24  Aligned_cols=90  Identities=24%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      |+|+++|++|+|||||+|+|++..  ..++..+++|.+.....   .+.++.+|||||+.+....+...-....+..+..
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            589999999999999999999974  33556677787765433   2578999999998542111110000111111211


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                        ..|++++|+|++++.
T Consensus        79 --~~d~~l~v~d~~~~~   93 (168)
T cd01897          79 --LRAAVLFLFDPSETC   93 (168)
T ss_pred             --ccCcEEEEEeCCccc
Confidence              247899999998653

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.39  E-value=1.8e-12  Score=114.38  Aligned_cols=87  Identities=25%  Similarity=0.280  Sum_probs=64.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|++|||||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+...  .+.+.+.+.... ....
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~~~~~~-~~~~   76 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLDKQIREQA-EIAI   76 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHHHHHHHHH-HHHH
Confidence            4899999999999999999998 4678899999999876443   4788999999998642  222222222211 2334


Q ss_pred             CceeEEEEEEecCC
Q 029512          171 NFWSCTCFLIYIFY  184 (192)
Q Consensus       171 ~~~~~v~~vvD~s~  184 (192)
                      +.+|++++|+|++.
T Consensus        77 ~~ad~vl~vvD~~~   90 (429)
T TIGR03594        77 EEADVILFVVDGRE   90 (429)
T ss_pred             hhCCEEEEEEeCCC
Confidence            67899999999875

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.39  E-value=1.1e-12  Score=99.07  Aligned_cols=56  Identities=39%  Similarity=0.568  Sum_probs=50.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF  150 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~  150 (192)
                      +++++|.+|+|||||+|+|++. ....++..+|+|++.+....+..+.++||||+..
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~  140 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGLVF  140 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCcCC
Confidence            8999999999999999999998 5567888999999988888877899999999864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK00089 era GTPase Era; Reviewed

Probab=99.38  E-value=3e-12  Score=107.66  Aligned_cols=88  Identities=27%  Similarity=0.218  Sum_probs=63.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..|+++|.+|||||||+|+|+|. ..+.+++.+.+|++.....   .+..+.++||||+..+..  .+.+.+.... ...
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~~~~~~~~-~~~   81 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALNRAMNKAA-WSS   81 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHHHHHHHHH-HHH
Confidence            37999999999999999999998 6788888898888754322   346899999999876331  1111111111 233


Q ss_pred             cCceeEEEEEEecCC
Q 029512          170 RNFWSCTCFLIYIFY  184 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~  184 (192)
                      ...+|++++|+|++.
T Consensus        82 ~~~~D~il~vvd~~~   96 (292)
T PRK00089         82 LKDVDLVLFVVDADE   96 (292)
T ss_pred             HhcCCEEEEEEeCCC
Confidence            457899999999986

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.38  E-value=1.1e-12  Score=112.14  Aligned_cols=83  Identities=19%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---------------------------eCCeEEEEECCC
Q 029512           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDLPG  147 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---------------------------~~~~~~lvDtPG  147 (192)
                      |+++|.||||||||+|+|++..  ..++++|++|.++....                           ...++.++||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            5899999999999999999974  67899999998876321                           124689999999


Q ss_pred             CCCC-CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          148 YGFA-YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       148 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +... .....+.+.+     +...+++|++++|+|++.
T Consensus        79 lv~ga~~~~glg~~f-----L~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          79 LVPGAHEGKGLGNKF-----LDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCCCccchhhHHHHH-----HHHHHHCCEEEEEEeCCC
Confidence            8642 2223333332     556778999999999974

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.38  E-value=4e-12  Score=112.48  Aligned_cols=94  Identities=27%  Similarity=0.224  Sum_probs=69.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..++|+++|.+|+|||||+|+|++. ....+++.+|+|++...   ...+..+.++||||+..........+.+.....+
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            4679999999999999999999987 45778899999998642   2347789999999987633322222222212224


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                      ...+.+|++++|+|++.+
T Consensus       251 ~~~~~ad~~ilViD~~~~  268 (435)
T PRK00093        251 KAIERADVVLLVIDATEG  268 (435)
T ss_pred             HHHHHCCEEEEEEeCCCC
Confidence            455678999999999864

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.38  E-value=1.2e-12  Score=100.39  Aligned_cols=58  Identities=34%  Similarity=0.487  Sum_probs=51.9

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~  148 (192)
                      ....+++++|.||+|||||+|+|++. ....++..+|+|++.+....+..+.++||||+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence            35679999999999999999999997 44668889999999998888889999999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.37  E-value=1.7e-12  Score=107.45  Aligned_cols=91  Identities=24%  Similarity=0.253  Sum_probs=63.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChH-HHHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVS  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~-~~~~~~~~~~~  166 (192)
                      ....|+++|.||+|||||||+|+.. ....++..+.+|....   ..+.+..+.||||||+++....+ +.++...++  
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~--  114 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY--  114 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH--
Confidence            3457789999999999999999975 4456665544443322   23356899999999999854333 344444333  


Q ss_pred             hhccCceeEEEEEEecCCceE
Q 029512          167 ISYRNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~~  187 (192)
                         ...+|++++++|+.++++
T Consensus       115 ---l~~~DLvL~l~~~~draL  132 (296)
T COG3596         115 ---LPKLDLVLWLIKADDRAL  132 (296)
T ss_pred             ---hhhccEEEEeccCCCccc
Confidence               345689999999988764

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.37  E-value=3.9e-12  Score=114.02  Aligned_cols=91  Identities=23%  Similarity=0.316  Sum_probs=66.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..++|+++|.+|||||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+....  ..+...+.... .
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~-~  112 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQA-E  112 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHH-H
Confidence            4579999999999999999999997 4567889999999876543   36789999999986311  11222221111 1


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                      ...+.+|++++|+|++..
T Consensus       113 ~~~~~aD~il~VvD~~~~  130 (472)
T PRK03003        113 VAMRTADAVLFVVDATVG  130 (472)
T ss_pred             HHHHhCCEEEEEEECCCC
Confidence            234568999999999864

>cd01855 YqeH YqeH

Probab=99.37  E-value=1.2e-12  Score=103.53  Aligned_cols=57  Identities=35%  Similarity=0.475  Sum_probs=49.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC-------ceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~-------~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~  148 (192)
                      ...++++|.+|+|||||||+|++...       ...++..+|+|++.+.+..+..+.++|||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence            35899999999999999999998531       2467788999999998888778999999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.37  E-value=2.5e-12  Score=115.28  Aligned_cols=94  Identities=22%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..++|+++|.+|||||||+|+|++. ....+++.+|+|++..   +...+..+.+|||||+............+..+...
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence            4579999999999999999999997 4456888999998764   22347789999999986422111111222222223


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                      ...+.+|++++|+|++..
T Consensus       289 ~~i~~ad~vilV~Da~~~  306 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEP  306 (472)
T ss_pred             HHHhcCCEEEEEEeCCCC
Confidence            345678999999998764

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.36  E-value=2.7e-12  Score=107.56  Aligned_cols=60  Identities=32%  Similarity=0.536  Sum_probs=54.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~  151 (192)
                      ...+++++|.||||||||+|+|++. ....+++.||+|+..+++..+..+.++||||+..+
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~  176 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP  176 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence            4578999999999999999999997 56788999999999998888889999999999664

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK15494 era GTPase Era; Provisional

Probab=99.36  E-value=3.8e-12  Score=109.67  Aligned_cols=88  Identities=22%  Similarity=0.162  Sum_probs=63.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHH-HHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAW-EELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~-~~~~~l  167 (192)
                      ..+|+++|.+|||||||+|+|++. ..+.+++.+++|++....   ..+.++.+|||||+......  +...+ ...  .
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~~~~~r~~--~  126 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LEKAMVRCA--W  126 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HHHHHHHHH--H
Confidence            458999999999999999999997 667788889999875432   23678999999998643221  11111 111  2


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                      .....+|++++|+|++.
T Consensus       127 ~~l~~aDvil~VvD~~~  143 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK  143 (339)
T ss_pred             HHhhhCCEEEEEEECCC
Confidence            23456899999999865

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.36  E-value=2e-12  Score=110.98  Aligned_cols=87  Identities=20%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---C-CeEEEEECCCCCCCC-ChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAY-AKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~-~~~~lvDtPG~~~~~-~~~~~~~~~~~~~~  166 (192)
                      ...|+|+|.||||||||+|+|++..  ..+++++++|..++....   + ..+.++||||+.... ....+...|     
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~f-----  229 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRF-----  229 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHH-----
Confidence            3588999999999999999999874  568899999988765442   3 789999999986522 222233333     


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                      +.+...++++++|+|++..
T Consensus       230 lrhierad~ll~VvD~s~~  248 (329)
T TIGR02729       230 LKHIERTRVLLHLIDISPL  248 (329)
T ss_pred             HHHHHhhCEEEEEEcCccc
Confidence            3445568999999999865

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.36  E-value=4.5e-12  Score=112.16  Aligned_cols=89  Identities=26%  Similarity=0.300  Sum_probs=65.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ++|+++|.+|||||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+....  +.....+.... ...
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~-~~~   77 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFEKQIREQA-ELA   77 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHHHHHHHHH-HHH
Confidence            68999999999999999999998 5577889999998875433   37889999999987521  11212111111 223


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      ...+|++++|+|++.+
T Consensus        78 ~~~ad~il~vvd~~~~   93 (435)
T PRK00093         78 IEEADVILFVVDGRAG   93 (435)
T ss_pred             HHhCCEEEEEEECCCC
Confidence            4568999999999763

>PRK12288 GTPase RsgA; Reviewed

Probab=99.35  E-value=1.8e-12  Score=112.06  Aligned_cols=86  Identities=26%  Similarity=0.293  Sum_probs=63.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCC-------ceeEEEEEeeCCeEEEEECCCCCC---C-CChHHHHHHHH
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGF---A-YAKEEVKDAWE  162 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-------~T~~~~~~~~~~~~~lvDtPG~~~---~-~~~~~~~~~~~  162 (192)
                      .++|+|.||||||||||+|++. ....++..++       ||+..+.+.......|+|||||..   . ...+++...|.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~-~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~  285 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPE-AEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFV  285 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccc-cceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhH
Confidence            6899999999999999999987 3345554443       788888888765667999999865   2 35577888998


Q ss_pred             HHHhhhccCceeEEEEEEecCCce
Q 029512          163 ELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       163 ~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      +|..+..      -|..-||+|.+
T Consensus       286 ei~~~~~------~CrF~dC~H~~  303 (347)
T PRK12288        286 EFRDYLG------TCKFRDCKHDD  303 (347)
T ss_pred             HHHHHhc------CCCCCCCccCC
Confidence            8877421      24455666654

>cd01894 EngA1 EngA1 subfamily

Probab=99.35  E-value=4.3e-12  Score=95.54  Aligned_cols=85  Identities=25%  Similarity=0.243  Sum_probs=59.9

Q ss_pred             EEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHH-HHHHHHhhhccC
Q 029512           96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKD-AWEELVSISYRN  171 (192)
Q Consensus        96 ~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~-~~~~~~~l~~~~  171 (192)
                      +++|.+|+|||||+|+|++. .....+..+++|++.....   .+..+.++||||+.....  .... .+...  ....+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~--~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQA--ELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHH--HHHHH
Confidence            47899999999999999987 4456777888887765433   367899999999876322  1111 11111  22335


Q ss_pred             ceeEEEEEEecCCc
Q 029512          172 FWSCTCFLIYIFYT  185 (192)
Q Consensus       172 ~~~~v~~vvD~s~~  185 (192)
                      .+|++++|+|++++
T Consensus        76 ~~d~ii~v~d~~~~   89 (157)
T cd01894          76 EADVILFVVDGREG   89 (157)
T ss_pred             hCCEEEEEEecccc
Confidence            68999999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.34  E-value=4.6e-12  Score=103.80  Aligned_cols=86  Identities=23%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l~~  169 (192)
                      +|+++|++|+|||||+|+|++..  ..+++.+++|.++...   ..+..+.++||||+..... ......   .+  +..
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~---~~--l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGR---QV--IAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHH---HH--HHh
Confidence            68999999999999999999974  5577888988776533   3478899999999865221 111111   11  344


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+++|++++|+|+++++
T Consensus        75 ~~~ad~il~V~D~t~~~   91 (233)
T cd01896          75 ARTADLILMVLDATKPE   91 (233)
T ss_pred             hccCCEEEEEecCCcch
Confidence            67889999999997754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.33  E-value=5.9e-12  Score=101.65  Aligned_cols=89  Identities=20%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l~~  169 (192)
                      +|+|+|.+|+||||++|+|+|...........++|+.++...   .|..+.+||||||.++.. .+...+.+...+.+ .
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~-~   80 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL-C   80 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH-T
T ss_pred             EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh-c
Confidence            789999999999999999999853222223445676665433   489999999999977543 34344444333322 2


Q ss_pred             cCceeEEEEEEecC
Q 029512          170 RNFWSCTCFLIYIF  183 (192)
Q Consensus       170 ~~~~~~v~~vvD~s  183 (192)
                      ....+++++|+...
T Consensus        81 ~~g~ha~llVi~~~   94 (212)
T PF04548_consen   81 SPGPHAFLLVIPLG   94 (212)
T ss_dssp             TT-ESEEEEEEETT
T ss_pred             cCCCeEEEEEEecC
Confidence            45578888888765

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd04163 Era Era subfamily

Probab=99.33  E-value=1.6e-11  Score=92.54  Aligned_cols=90  Identities=27%  Similarity=0.194  Sum_probs=62.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|++++. ..+...+.+.+|+......   .+..+.++||||+........  ..+.... ..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~-~~   78 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG--ERMVKAA-WS   78 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH--HHHHHHH-HH
Confidence            358999999999999999999997 5566666666776544322   246799999999875322111  1111111 23


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ....+|.+++++|++++
T Consensus        79 ~~~~~d~i~~v~d~~~~   95 (168)
T cd04163          79 ALKDVDLVLFVVDASEP   95 (168)
T ss_pred             HHHhCCEEEEEEECCCc
Confidence            34567999999999876

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.33  E-value=9.2e-12  Score=109.84  Aligned_cols=94  Identities=26%  Similarity=0.226  Sum_probs=67.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|+|||||+|+|++. ....+++.+|+|++....   ..+..+.+|||||+..........+.+.....+
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence            3468999999999999999999997 456788899999876422   346789999999987533222112222222224


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                      ...+.+|++++|+|++++
T Consensus       250 ~~~~~ad~~ilV~D~~~~  267 (429)
T TIGR03594       250 KAIERADVVLLVLDATEG  267 (429)
T ss_pred             HHHHhCCEEEEEEECCCC
Confidence            455778999999999864

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.32  E-value=2.1e-12  Score=99.24  Aligned_cols=82  Identities=22%  Similarity=0.246  Sum_probs=58.0

Q ss_pred             EEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---e-CCeEEEEECCCCCCCCCh-HHHHHHHHHHHhhhccC
Q 029512           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAK-EEVKDAWEELVSISYRN  171 (192)
Q Consensus        97 lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~-~~~~~lvDtPG~~~~~~~-~~~~~~~~~~~~l~~~~  171 (192)
                      ++|++|||||||+|+|++.. . .+++.+++|+++....   . +..+.++||||+...... +.+.   ..+  +...+
T Consensus         1 iiG~~~~GKStll~~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~---~~~--~~~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAK-P-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLG---NQF--LAHIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCC-c-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCcc---HHH--HHHHh
Confidence            57999999999999999973 3 5677888887765332   3 788999999998642111 1111   111  22334


Q ss_pred             ceeEEEEEEecCCc
Q 029512          172 FWSCTCFLIYIFYT  185 (192)
Q Consensus       172 ~~~~v~~vvD~s~~  185 (192)
                      .+|++++|+|++++
T Consensus        74 ~~d~ii~v~d~~~~   87 (176)
T cd01881          74 RADAILHVVDASED   87 (176)
T ss_pred             ccCEEEEEEeccCC
Confidence            58999999999876

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK12289 GTPase RsgA; Reviewed

Probab=99.32  E-value=5.9e-12  Score=108.93  Aligned_cols=89  Identities=25%  Similarity=0.327  Sum_probs=64.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCC-------ceeEEEEEeeCCeEEEEECCCCCCC---CChHHHHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA---YAKEEVKDAWE  162 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-------~T~~~~~~~~~~~~~lvDtPG~~~~---~~~~~~~~~~~  162 (192)
                      ..++|+|+||||||||||+|++. ....++..++       ||++.+.+.......|+|||||...   ...+++...|.
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l~~~~~~l~~~F~  251 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDLDCSPRELAHYFP  251 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCccccccccCHHHHHhhHH
Confidence            36899999999999999999987 3455666666       8999888877545589999999763   23466777777


Q ss_pred             HHHhhhccCceeEEEEEEecCCce
Q 029512          163 ELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       163 ~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ++..+..    ..-|..-||.|.+
T Consensus       252 e~~~~~~----~~~CrF~dC~H~~  271 (352)
T PRK12289        252 EARQRLA----QGNCQFNDCLHRD  271 (352)
T ss_pred             HHHHhHh----hCceEccCCccCC
Confidence            7755211    1235666777654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.31  E-value=7.1e-12  Score=94.69  Aligned_cols=85  Identities=22%  Similarity=0.212  Sum_probs=58.2

Q ss_pred             EEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        97 lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      |+|.+|+|||||+|++++..  ..++..+++|.+....   ..+..+.+|||||+............+..+  +.. ..+
T Consensus         1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~--~~~-~~~   75 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDF--LLG-EKP   75 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHH--hcC-CCC
Confidence            57999999999999999973  5667778888776422   236789999999986422111111112222  222 678


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      |++++|+|++.++
T Consensus        76 d~vi~v~d~~~~~   88 (158)
T cd01879          76 DLIVNVVDATNLE   88 (158)
T ss_pred             cEEEEEeeCCcch
Confidence            9999999998754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.30  E-value=1.4e-11  Score=115.44  Aligned_cols=94  Identities=26%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..++|+++|.+|||||||+|+|++. ....+++.+|+|++..   +...+..+.+|||||+..........+.+..+...
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            4579999999999999999999997 4567788999998864   23357789999999986532221111222222224


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                      ...+.+|++++|+|++..
T Consensus       528 ~~i~~advvilViDat~~  545 (712)
T PRK09518        528 AAIERSELALFLFDASQP  545 (712)
T ss_pred             HHhhcCCEEEEEEECCCC
Confidence            445778999999999765

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=99.29  E-value=4.3e-12  Score=106.52  Aligned_cols=133  Identities=24%  Similarity=0.278  Sum_probs=85.5

Q ss_pred             ccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHh--------------hhhhHHHHHh
Q 029512           15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--------------FRNKLEFFAA   80 (192)
Q Consensus        15 ~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~--------------~~~~~~~~~~   80 (192)
                      +=-|+++.++.|++.+..+.+++.++++++.    .+.+........+.+....-+              ....+..+..
T Consensus        56 aRiPLssrn~~~~~~~~~k~riiVlNK~DLa----d~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~  131 (335)
T KOG2485|consen   56 ARIPLSSRNELFQDFLPPKPRIIVLNKMDLA----DPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSE  131 (335)
T ss_pred             cccCCccccHHHHHhcCCCceEEEEeccccc----CchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHH
Confidence            4458999999999999999999999998433    322110000000000000000              0001111111


Q ss_pred             cccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhc----cCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCC
Q 029512           81 AKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        81 ~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~----~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~  151 (192)
                      ...+..+..+....++++|-||+|||||||++...    .+.+.++..||+|+.+..   +...+.++++||||+..+
T Consensus       132 ~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P  209 (335)
T KOG2485|consen  132 ELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP  209 (335)
T ss_pred             HHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence            12223333456789999999999999999999753    257899999999999864   335788999999999775

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.29  E-value=1.1e-11  Score=107.56  Aligned_cols=59  Identities=36%  Similarity=0.431  Sum_probs=51.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc----CceeecCCCCceeEEEEEeeCCeEEEEECCCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~----~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~  151 (192)
                      ..++++|.||||||||+|+|++..    ....++..||+|++...+..+..+.++||||+..+
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~  217 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS  217 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh
Confidence            589999999999999999999853    23678999999999998888778899999999863

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.28  E-value=3.3e-11  Score=102.20  Aligned_cols=88  Identities=17%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|+||||++|+|+|. ..+.++...++|.....   ...|..+.+|||||+.+.....  .+....+..+
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~--e~~~~~ik~~  113 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN--DQAVNIIKRF  113 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH--HHHHHHHHHH
Confidence            4679999999999999999999998 55566666665544332   2357899999999998642111  1111122222


Q ss_pred             hccCceeEEEEEEe
Q 029512          168 SYRNFWSCTCFLIY  181 (192)
Q Consensus       168 ~~~~~~~~v~~vvD  181 (192)
                      ......|++++|.+
T Consensus       114 l~~~g~DvVLyV~r  127 (313)
T TIGR00991       114 LLGKTIDVLLYVDR  127 (313)
T ss_pred             hhcCCCCEEEEEec
Confidence            22346788888843

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.28  E-value=6.9e-12  Score=103.55  Aligned_cols=87  Identities=24%  Similarity=0.322  Sum_probs=61.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecC-------CCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDA  160 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-------~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~  160 (192)
                      ...++++|+||||||||+|+|.+.. ...++.       ..+||++.+.+..+ ...|+|||||..    ....+++...
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~  197 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQG  197 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHh
Confidence            3588999999999999999999863 222222       23488888877763 459999999965    3445778888


Q ss_pred             HHHHHhhhccCceeEEEEEEecCCce
Q 029512          161 WEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       161 ~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      |.++..+..      -|..-||+|.+
T Consensus       198 f~e~~~~~~------~C~f~~C~H~~  217 (245)
T TIGR00157       198 FVEFRDYLG------ECKFRDCLHQS  217 (245)
T ss_pred             CHHHHHHhC------CCCCCCCccCC
Confidence            888866322      14445565543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.28  E-value=3.4e-11  Score=112.90  Aligned_cols=90  Identities=23%  Similarity=0.313  Sum_probs=66.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..++|+++|++|||||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+.....  .+...+.... .
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~-~  349 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GIDSAIASQA-Q  349 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHHHHHHHHH-H
Confidence            4578999999999999999999997 5678899999999876544   267899999999864211  1111111111 2


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                      ...+.+|++++|+|++.
T Consensus       350 ~~~~~aD~iL~VvDa~~  366 (712)
T PRK09518        350 IAVSLADAVVFVVDGQV  366 (712)
T ss_pred             HHHHhCCEEEEEEECCC
Confidence            23457899999999975

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.27  E-value=2e-11  Score=115.01  Aligned_cols=89  Identities=19%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC---hHHHHHHH-HHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA---KEEVKDAW-EELV  165 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~---~~~~~~~~-~~~~  165 (192)
                      .+|+++|++|||||||+|+|+|..  ..+++.+|+|.+.....   .+.++.++||||..+-..   .....+.+ ..+ 
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~-   80 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY-   80 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH-
Confidence            589999999999999999999974  57899999999875433   367899999999865211   11111111 111 


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                        .....+|.+++|+|++..+
T Consensus        81 --l~~~~aD~vI~VvDat~le   99 (772)
T PRK09554         81 --ILSGDADLLINVVDASNLE   99 (772)
T ss_pred             --HhccCCCEEEEEecCCcch
Confidence              1234679999999998644

>cd01856 YlqF YlqF

Probab=99.26  E-value=2.2e-11  Score=94.95  Aligned_cols=59  Identities=34%  Similarity=0.582  Sum_probs=51.5

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG  149 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~  149 (192)
                      ...++++++|.+|+|||||+|+|++. ....++..+|+|++.+.+..+..+.++||||+.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~  171 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGIL  171 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence            34568999999999999999999997 456788899999999887777889999999973

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.25  E-value=1.2e-11  Score=104.12  Aligned_cols=89  Identities=24%  Similarity=0.332  Sum_probs=64.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC--ceeecC----CCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG--VVRTSD----KPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDAW  161 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~--~~~~~~----~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~~  161 (192)
                      ....+++|+||||||||+|+|.+...  ...++.    .-.||++...+.....-.|+|||||..    ....+.+...|
T Consensus       164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F  243 (301)
T COG1162         164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAF  243 (301)
T ss_pred             CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHh
Confidence            44889999999999999999997521  222222    224888888888877779999999854    46778888898


Q ss_pred             HHHHhhhccCceeEEEEEEecCCce
Q 029512          162 EELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       162 ~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      .++.++      ..-|..-||+|.+
T Consensus       244 ~ef~~~------~~~CkFr~C~H~~  262 (301)
T COG1162         244 PEFAEL------ARQCKFRDCTHTH  262 (301)
T ss_pred             HHHHHH------hcCCCCCCCCCCC
Confidence            888763      2235555666543

>TIGR00092 GTP-binding protein YchF

Probab=99.23  E-value=1.3e-11  Score=106.98  Aligned_cols=92  Identities=21%  Similarity=0.146  Sum_probs=69.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---C-----------------CeEEEEECCCCCC-C
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGF-A  151 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~-----------------~~~~lvDtPG~~~-~  151 (192)
                      .+++|||.||+|||||+|+|++.. ...++++|++|.+++....   +                 ..+.++|.||+.. +
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~-~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLL-GNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCC-ccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            589999999999999999999984 3378899999988764321   1                 3689999999876 3


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEEE
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIIL  190 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~~  190 (192)
                      ....++.+.|     |.+.+++|.+++|+|++..+.+.|
T Consensus        82 s~g~Glgn~f-----L~~ir~~d~l~hVvr~f~d~~i~H  115 (368)
T TIGR00092        82 SKGEGLGNQF-----LANIREVDIIQHVVRCFEDDIIHH  115 (368)
T ss_pred             hcccCcchHH-----HHHHHhCCEEEEEEeCCCCcccCc
Confidence            3333444444     667788999999999987655543

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.22  E-value=1.1e-10  Score=89.17  Aligned_cols=80  Identities=18%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe------eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~------~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      |.|+++|.+|+|||||+|+|++.. .. ....+++|++.....      .+..+.++||||...      ....+..   
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~-~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~------~~~~~~~---   69 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTN-VA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA------FTNMRAR---   69 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcc-cc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH------HHHHHHH---
Confidence            579999999999999999999863 22 234456776654222      156899999999532      1122221   


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                        ....+|++++|+|+++.
T Consensus        70 --~~~~~d~il~v~d~~~~   86 (168)
T cd01887          70 --GASLTDIAILVVAADDG   86 (168)
T ss_pred             --HHhhcCEEEEEEECCCC
Confidence              12467999999999764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.22  E-value=6.8e-12  Score=97.22  Aligned_cols=74  Identities=27%  Similarity=0.333  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccC--ceeec----CCCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWG--VVRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDAWE  162 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~--~~~~~----~~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~~~  162 (192)
                      ..++++|+||||||||+|+|.+...  ...++    ....+|+..+.+.......|+|||||..    ....+.+...|.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~  115 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFP  115 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSG
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHH
Confidence            5899999999999999999998732  11222    2224788888888878889999999864    245566666666


Q ss_pred             HHHh
Q 029512          163 ELVS  166 (192)
Q Consensus       163 ~~~~  166 (192)
                      ++..
T Consensus       116 e~~~  119 (161)
T PF03193_consen  116 EFRP  119 (161)
T ss_dssp             GGHH
T ss_pred             Hhcc
Confidence            6655

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.22  E-value=1.8e-10  Score=105.66  Aligned_cols=89  Identities=19%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCC-CCceeEEEEE--eeCCeEEEEECCCCCCCCChH-HHHHHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-~g~T~~~~~~--~~~~~~~lvDtPG~~~~~~~~-~~~~~~~~~~~l~  168 (192)
                      .+|+++|.||+||||++|+|+|. ....++.. +++|+.....  ..+..+.+|||||+.++...+ .....+..+..+-
T Consensus       119 lrIvLVGKTGVGKSSLINSILGe-kvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L  197 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIFGE-VKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI  197 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcc-ccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence            58999999999999999999998 34445544 4555533322  247889999999998753322 2223333333322


Q ss_pred             ccCceeEEEEEEec
Q 029512          169 YRNFWSCTCFLIYI  182 (192)
Q Consensus       169 ~~~~~~~v~~vvD~  182 (192)
                      ....++++++|...
T Consensus       198 sk~gpDVVLlV~RL  211 (763)
T TIGR00993       198 KKNPPDIVLYVDRL  211 (763)
T ss_pred             hcCCCCEEEEEEeC
Confidence            22346777777653

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd04171 SelB SelB subfamily

Probab=99.22  E-value=1e-10  Score=88.69  Aligned_cols=79  Identities=23%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEe---e-CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~---~-~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .|+++|++|||||||+|+|++.. ....  ...+++|.+..+..   . +..+.+|||||..      ...   ..+  .
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~------~~~---~~~--~   69 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIE-TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE------KFI---KNM--L   69 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcc-cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH------HHH---HHH--H
Confidence            68999999999999999999752 1111  22346666654322   2 6789999999952      111   111  2


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                      .....+|++++|+|+++
T Consensus        70 ~~~~~ad~ii~V~d~~~   86 (164)
T cd04171          70 AGAGGIDLVLLVVAADE   86 (164)
T ss_pred             hhhhcCCEEEEEEECCC
Confidence            23457899999999875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK13796 GTPase YqeH; Provisional

Probab=99.21  E-value=2.5e-11  Score=105.67  Aligned_cols=59  Identities=31%  Similarity=0.380  Sum_probs=50.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc----CceeecCCCCceeEEEEEeeCCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~----~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~  150 (192)
                      ...++++|.||||||||||+|++..    ....++..||+|++...+..+....++||||+..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~  222 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH  222 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence            3489999999999999999999642    2456889999999999888877789999999964

>cd04157 Arl6 Arl6 subfamily

Probab=99.18  E-value=1.7e-10  Score=87.50  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=55.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc-CceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~-~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      +|+++|.+|||||||+++|++.. ......+..|.+... +...+..+.+|||||...      ....|..+     .+.
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~------~~~~~~~~-----~~~   68 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK------YRGLWEHY-----YKN   68 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh------hHHHHHHH-----Hcc
Confidence            47899999999999999999863 123334445544332 223467799999999532      22334333     246


Q ss_pred             eeEEEEEEecCCce
Q 029512          173 WSCTCFLIYIFYTN  186 (192)
Q Consensus       173 ~~~v~~vvD~s~~~  186 (192)
                      +|++++|+|++++.
T Consensus        69 ~d~ii~v~D~~~~~   82 (162)
T cd04157          69 IQGIIFVIDSSDRL   82 (162)
T ss_pred             CCEEEEEEeCCcHH
Confidence            89999999998753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.18  E-value=1.6e-10  Score=87.82  Aligned_cols=81  Identities=16%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|.+|||||||+|++++.. .....+..+.+...........+.++||||..      .....|..+     .+.+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~------~~~~~~~~~-----~~~~   68 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAE-LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQE------KMRTVWKCY-----LENT   68 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-cccccCccCcceEEEEeCCceEEEEEECCCCH------hHHHHHHHH-----hccC
Confidence            47999999999999999999873 33333333333222222234679999999953      222334333     2357


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      |++++|+|++++.
T Consensus        69 ~~iv~v~D~~~~~   81 (160)
T cd04156          69 DGLVYVVDSSDEA   81 (160)
T ss_pred             CEEEEEEECCcHH
Confidence            8999999998764

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04154 Arl2 Arl2 subfamily

Probab=99.17  E-value=2.5e-10  Score=88.43  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=56.1

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ....+|+++|++|+|||||+|+|++. ......+..|..... ....+..+.+|||||..      .....|..+     
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~l~D~~G~~------~~~~~~~~~-----   78 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT-LEYEGYKLNIWDVGGQK------TLRPYWRNY-----   78 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE-EEECCEEEEEEECCCCH------HHHHHHHHH-----
Confidence            34579999999999999999999987 333333444432221 11236778999999942      222334333     


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      .+.+|++++|+|++.+
T Consensus        79 ~~~~d~~i~v~d~~~~   94 (173)
T cd04154          79 FESTDALIWVVDSSDR   94 (173)
T ss_pred             hCCCCEEEEEEECCCH
Confidence            2467999999998776

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01859 MJ1464 MJ1464

Probab=99.17  E-value=1e-10  Score=89.48  Aligned_cols=57  Identities=37%  Similarity=0.567  Sum_probs=49.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~  148 (192)
                      ...+++++|.+|+||||++|+|.+. ....+++.+|+|++.+....+..+.++||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence            3568899999999999999999987 45677888999998887777788999999996

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd00154 Rab Rab family

Probab=99.16  E-value=3e-10  Score=84.90  Aligned_cols=82  Identities=17%  Similarity=0.098  Sum_probs=54.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .+|+++|.+|+|||||+|.+++.. .... ....+.+.......   ....+.++|+||...      ....+..+    
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~~~~~----   69 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER------FRSITPSY----   69 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCc-CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH------HHHHHHHH----
Confidence            379999999999999999999874 2222 23334444433333   246789999999521      11122222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+++|++++|+|+++++
T Consensus        70 -~~~~d~ii~v~d~~~~~   86 (159)
T cd00154          70 -YRGAHGAILVYDITNRE   86 (159)
T ss_pred             -hcCCCEEEEEEECCCHH
Confidence             34689999999998754

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.14  E-value=4e-10  Score=88.57  Aligned_cols=82  Identities=18%  Similarity=0.292  Sum_probs=56.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||+|.+.+. ......++.+.+.. .....+..+.++||||..      .....|..+     .+
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~------~~~~~~~~~-----~~   83 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKND-RLAQHQPTQHPTSE-ELAIGNIKFTTFDLGGHQ------QARRLWKDY-----FP   83 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccccceE-EEEECCEEEEEEECCCCH------HHHHHHHHH-----hC
Confidence            479999999999999999999986 33333333333322 122236789999999963      223344433     24


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      +++++++|+|+++++
T Consensus        84 ~ad~ii~vvD~~~~~   98 (184)
T smart00178       84 EVNGIVYLVDAYDKE   98 (184)
T ss_pred             CCCEEEEEEECCcHH
Confidence            789999999998764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.14  E-value=4.9e-11  Score=100.51  Aligned_cols=87  Identities=18%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCC-CCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGF-AYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~-~~~~~~~~~~~~~~~~  166 (192)
                      ...|++||.||+|||||+|+|+..+  ..++.+++||..++...    ....+.+-|.||+.. +..+..+-..|     
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~F-----  268 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKF-----  268 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHH-----
Confidence            3477899999999999999999985  58999999999987443    245599999999976 33344444444     


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                      |++.+.++.+++|+|++-+
T Consensus       269 LrHiER~~~l~fVvD~s~~  287 (366)
T KOG1489|consen  269 LRHIERCKGLLFVVDLSGK  287 (366)
T ss_pred             HHHHHhhceEEEEEECCCc
Confidence            6777788999999999877

>cd01861 Rab6 Rab6 subfamily

Probab=99.13  E-value=3.9e-10  Score=85.58  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=52.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--Eee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|++|+|||||+|++++.. + .....++.+.+...  ... +  ..+.+|||||-.      .....+..+    
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~------~~~~~~~~~----   69 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDT-F-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE------RFRSLIPSY----   69 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC-C-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH------HHHHHHHHH----
Confidence            78999999999999999999873 2 22444555544321  221 2  458999999932      122223222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.++++++|.|.++++
T Consensus        70 -~~~~~~ii~v~d~~~~~   86 (161)
T cd01861          70 -IRDSSVAVVVYDITNRQ   86 (161)
T ss_pred             -hccCCEEEEEEECcCHH
Confidence             24678899999987653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.12  E-value=5.5e-10  Score=84.83  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|||||||+|++++........+..+.........   ....+.+|||||..      .....+..+     .
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~~~~~~~~~-----~   70 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP------EYLEVRNEF-----Y   70 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH------HHHHHHHHH-----h
Confidence            799999999999999999998742221122222221111121   24678999999952      111222222     2


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                      +.++++++|+|.+++
T Consensus        71 ~~~d~~ilv~D~~~~   85 (168)
T cd04119          71 KDTQGVLLVYDVTDR   85 (168)
T ss_pred             ccCCEEEEEEECCCH
Confidence            467899999998765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.12  E-value=5e-10  Score=86.55  Aligned_cols=80  Identities=19%  Similarity=0.272  Sum_probs=56.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|.+|||||||+|.+++. ......++.|.+.. .....+..+.++||||-      +.....|..+     .+.+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~------~~~~~~~~~~-----~~~a   67 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGG------ANFRGIWVNY-----YAEA   67 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCc------HHHHHHHHHH-----HcCC
Confidence            4799999999999999999986 33334444455433 22334678999999993      2233444433     3578


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      +++++|+|+++++
T Consensus        68 ~~ii~V~D~s~~~   80 (167)
T cd04161          68 HGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEEEEECCchh
Confidence            9999999998764

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.12  E-value=3.8e-10  Score=85.83  Aligned_cols=83  Identities=19%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce---eEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T---~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|++|+|||||+|+|++...........+.+   ........+..+.+|||||-      +.....+..+     
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~------~~~~~~~~~~-----   70 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ------ERYRSLAPMY-----   70 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch------HHHHHHHHHH-----
Confidence            479999999999999999999874222133344432   23333223467899999993      1122222222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|+|+++++
T Consensus        71 ~~~~~~~i~v~d~~~~~   87 (163)
T cd01860          71 YRGAAAAIVVYDITSEE   87 (163)
T ss_pred             hccCCEEEEEEECcCHH
Confidence            24678999999988764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04155 Arl3 Arl3 subfamily

Probab=99.12  E-value=5.7e-10  Score=85.86  Aligned_cols=83  Identities=20%  Similarity=0.355  Sum_probs=56.5

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ....+|+++|++|+|||||++.|.+. ......+..|.+... ....+..+.++||||..      .....|..+     
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~-~~~~~~~t~g~~~~~-i~~~~~~~~~~D~~G~~------~~~~~~~~~-----   78 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASE-DISHITPTQGFNIKT-VQSDGFKLNVWDIGGQR------AIRPYWRNY-----   78 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcC-CCcccCCCCCcceEE-EEECCEEEEEEECCCCH------HHHHHHHHH-----
Confidence            34679999999999999999999986 333344444544332 22247789999999952      222233332     


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      .+.++.+++|+|++.+
T Consensus        79 ~~~~~~ii~v~D~~~~   94 (173)
T cd04155          79 FENTDCLIYVIDSADK   94 (173)
T ss_pred             hcCCCEEEEEEeCCCH
Confidence            2467899999998753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01866 Rab2 Rab2 subfamily

Probab=99.11  E-value=7.7e-10  Score=85.23  Aligned_cols=84  Identities=20%  Similarity=0.154  Sum_probs=52.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|++++...........|.+........   ...+.+|||||-      +.......     .
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~~~~~~~-----~   72 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ------ESFRSITR-----S   72 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------HHHHHHHH-----H
Confidence            358999999999999999999987311111223333333222222   347899999993      22122211     1


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|+++++
T Consensus        73 ~~~~~d~il~v~d~~~~~   90 (168)
T cd01866          73 YYRGAAGALLVYDITRRE   90 (168)
T ss_pred             HhccCCEEEEEEECCCHH
Confidence            224678999999988653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd00880 Era_like Era (E

Probab=99.11  E-value=5.1e-10  Score=83.00  Aligned_cols=84  Identities=27%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             EEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHH-HHHHHHHHhhhccC
Q 029512           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEV-KDAWEELVSISYRN  171 (192)
Q Consensus        97 lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~-~~~~~~~~~l~~~~  171 (192)
                      ++|++|+|||||+|+|++. .....+..+++|........    +..+.++||||+......... ...+..     ...
T Consensus         1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~-----~~~   74 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARR-----VLE   74 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHH-----HHH
Confidence            5799999999999999987 44446666777766543332    668999999998764332211 112211     234


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|.+++++|++.+.
T Consensus        75 ~~d~il~v~~~~~~~   89 (163)
T cd00880          75 RADLILFVVDADLRA   89 (163)
T ss_pred             hCCEEEEEEeCCCCC
Confidence            679999999998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04149 Arf6 Arf6 subfamily

Probab=99.11  E-value=7.2e-10  Score=85.89  Aligned_cols=82  Identities=17%  Similarity=0.181  Sum_probs=54.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||+++|.... .....++.|.+.. ........+.+|||||..      .....|..+     .+
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~-~~~~~~t~g~~~~-~~~~~~~~~~l~Dt~G~~------~~~~~~~~~-----~~   75 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQD------KIRPLWRHY-----YT   75 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCC-CccccCCcccceE-EEEECCEEEEEEECCCCH------HHHHHHHHH-----hc
Confidence            4699999999999999999998652 2222233333332 122246789999999952      223334333     24


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|++.+.
T Consensus        76 ~a~~ii~v~D~t~~~   90 (168)
T cd04149          76 GTQGLIFVVDSADRD   90 (168)
T ss_pred             cCCEEEEEEeCCchh
Confidence            689999999998753

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.10  E-value=1.5e-10  Score=97.62  Aligned_cols=87  Identities=26%  Similarity=0.337  Sum_probs=61.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeec-------CCCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDAW  161 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-------~~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~~  161 (192)
                      ..++++|++|+|||||+|+|++... ..++       ...++|+..+.+.......++||||+..    ....+++...|
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f  240 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYF  240 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHh
Confidence            5899999999999999999998632 2222       2334788887777754568999999943    35567777888


Q ss_pred             HHHHhhhccCceeEEEEEEecCCce
Q 029512          162 EELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       162 ~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      .++..+.      .-|..-||+|.+
T Consensus       241 ~~~~~~~------~~C~F~~C~H~~  259 (287)
T cd01854         241 PEFRELA------GQCKFRDCTHTN  259 (287)
T ss_pred             HHHHHHh------CCCCCCCCcCCC
Confidence            8776632      124555666654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.10  E-value=5.9e-10  Score=84.55  Aligned_cols=80  Identities=18%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|.+|+|||||+|++++.. ........+.+.+. ....+..+.+|||||...      ....|..+.     ..+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~------~~~~~~~~~-----~~~   67 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET-VEYKNVSFTVWDVGGQDK------IRPLWKHYY-----ENT   67 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE-EEECCEEEEEEECCCChh------hHHHHHHHh-----ccC
Confidence            58999999999999999999973 33333444444332 222467899999999542      122343332     356


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      +++++|+|++.++
T Consensus        68 ~~~i~v~D~~~~~   80 (158)
T cd00878          68 NGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEEEECCCHH
Confidence            9999999998763

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG2484 consensus GTPase [General function prediction only]

Probab=99.10  E-value=4.1e-11  Score=103.44  Aligned_cols=62  Identities=32%  Similarity=0.487  Sum_probs=56.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~  153 (192)
                      ...+++++|+||+||||+||+|... ..+.+++.||.|+..+....+..+.|+|+||+.....
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~  312 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSI  312 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceeecCC
Confidence            4569999999999999999999998 6799999999999999999999999999999876433

>PRK00098 GTPase RsgA; Reviewed

Probab=99.09  E-value=3.4e-10  Score=95.98  Aligned_cols=74  Identities=28%  Similarity=0.432  Sum_probs=55.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-------CceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDA  160 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-------g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~  160 (192)
                      ...++++|++|||||||+|+|++.. ...++..+       .+|+..+.+.......++||||+..    ....+++...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~  242 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHY  242 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHH
Confidence            4589999999999999999999863 22233222       3788777777766679999999873    3456777778


Q ss_pred             HHHHHh
Q 029512          161 WEELVS  166 (192)
Q Consensus       161 ~~~~~~  166 (192)
                      |.++..
T Consensus       243 f~~~~~  248 (298)
T PRK00098        243 FPEFRP  248 (298)
T ss_pred             HHHHHH
Confidence            777765

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.09  E-value=8.5e-10  Score=85.73  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=55.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|+|||||++.|++.. .....+..+.+.. .....+..+.++||||..      .....|...     .+
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~------~~~~~~~~~-----~~   81 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVE-EIVYKNIRFLMWDIGGQE------SLRSSWNTY-----YT   81 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccceE-EEEECCeEEEEEECCCCH------HHHHHHHHH-----hh
Confidence            4589999999999999999998763 2333344443332 222346789999999953      223334333     24


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|+++++
T Consensus        82 ~~d~vi~V~D~s~~~   96 (174)
T cd04153          82 NTDAVILVIDSTDRE   96 (174)
T ss_pred             cCCEEEEEEECCCHH
Confidence            689999999998753

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.09  E-value=5e-10  Score=85.62  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=51.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCc--eeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~--~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|++|+|||||+|.|++....  .........|....   ....+..+.+|||||...      ....+..+    
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~----   70 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES------LRSLWDKY----   70 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh------hHHHHHHH----
Confidence            4799999999999999999875211  01111122333222   222367899999999532      22233322    


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                       ...++++++|+|++.+
T Consensus        71 -~~~~~~~v~vvd~~~~   86 (167)
T cd04160          71 -YAECHAIIYVIDSTDR   86 (167)
T ss_pred             -hCCCCEEEEEEECchH
Confidence             3467899999998765

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.09  E-value=5.3e-10  Score=102.85  Aligned_cols=83  Identities=24%  Similarity=0.215  Sum_probs=59.1

Q ss_pred             ecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeE
Q 029512           99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSC  175 (192)
Q Consensus        99 G~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~  175 (192)
                      |++|||||||+|+|++..  ..+++.+|+|.+.....   .+..+.++||||...-...........++..   ...+|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~---~~~aDv   75 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLL---NEKPDL   75 (591)
T ss_pred             CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHh---hcCCCE
Confidence            899999999999999974  57889999999875432   4678999999997652211111122222221   346799


Q ss_pred             EEEEEecCCce
Q 029512          176 TCFLIYIFYTN  186 (192)
Q Consensus       176 v~~vvD~s~~~  186 (192)
                      +++|+|++..+
T Consensus        76 vI~VvDat~le   86 (591)
T TIGR00437        76 VVNVVDASNLE   86 (591)
T ss_pred             EEEEecCCcch
Confidence            99999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01868 Rab11_like Rab11-like

Probab=99.08  E-value=1.3e-09  Score=83.27  Aligned_cols=83  Identities=19%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++++........+..+.+........ +  ..+.+|||||..      .....+...     
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~~~~~~~~~-----   72 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE------RYRAITSAY-----   72 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH------HHHHHHHHH-----
Confidence            58999999999999999999987321222233332222222222 2  468899999942      111222222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|+++++
T Consensus        73 ~~~~~~~i~v~d~~~~~   89 (165)
T cd01868          73 YRGAVGALLVYDITKKQ   89 (165)
T ss_pred             HCCCCEEEEEEECcCHH
Confidence            24678899999987643

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01863 Rab18 Rab18 subfamily

Probab=99.08  E-value=1.1e-09  Score=83.19  Aligned_cols=82  Identities=18%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|++|+|||||+|+|++........+..+.+........   ...+.+|||||...      ....+..+     .
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~~~~~-----~   70 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER------FRTLTSSY-----Y   70 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh------hhhhhHHH-----h
Confidence            7899999999999999999987422223444455444333222   35689999999421      11122222     3


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|+|.++++
T Consensus        71 ~~~d~~i~v~d~~~~~   86 (161)
T cd01863          71 RGAQGVILVYDVTRRD   86 (161)
T ss_pred             CCCCEEEEEEECCCHH
Confidence            5679999999987653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.08  E-value=1.4e-09  Score=82.45  Aligned_cols=81  Identities=21%  Similarity=0.181  Sum_probs=50.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|++|+|||||+|++++.. . .....+..+.+  ...... +  ..+.+|||||-.      .....+..+   
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~~~~~~~~---   69 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGK-F-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE------RFRSITSSY---   69 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH------HHHHHHHHH---
Confidence            379999999999999999999873 2 22222222222  122222 2  468899999932      111222222   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.+|++++|+|++++.
T Consensus        70 --~~~~d~~ilv~d~~~~~   86 (164)
T smart00175       70 --YRGAVGALLVYDITNRE   86 (164)
T ss_pred             --hCCCCEEEEEEECCCHH
Confidence              24689999999998764

Rab GTPases are implicated in vesicle trafficking.

>cd01864 Rab19 Rab19 subfamily

Probab=99.08  E-value=1.4e-09  Score=83.23  Aligned_cols=83  Identities=20%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..+|+++|.+|+|||||++++.+.. .... ....+.......... +  ..+.+|||||.      +.....+..+   
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~------~~~~~~~~~~---   72 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGT-FSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ------ERFRTITQSY---   72 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC-CcccCCCccceEEEEEEEEECCEEEEEEEEECCCh------HHHHHHHHHH---
Confidence            3589999999999999999998753 2211 122222222222222 2  47899999993      2222222222   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.+|++++++|++.+.
T Consensus        73 --~~~~d~~llv~d~~~~~   89 (165)
T cd01864          73 --YRSANGAIIAYDITRRS   89 (165)
T ss_pred             --hccCCEEEEEEECcCHH
Confidence              34679999999998763

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.07  E-value=3.2e-10  Score=91.07  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=54.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceee------------------------------cCCCCceeEEEEE---eeCCeE
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFF---KLGTKL  140 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~------------------------------~~~~g~T~~~~~~---~~~~~~  140 (192)
                      +|+++|++|+|||||+|+|+..... .+                              ....|+|++....   ..+.++
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKS-IFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence            4899999999999999999865321 11                              0125677776433   247789


Q ss_pred             EEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          141 CLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       141 ~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .++||||...      ..   ..+  +...+.+|++++|+|++.+
T Consensus        80 ~liDTpG~~~------~~---~~~--~~~~~~ad~~llVvD~~~~  113 (208)
T cd04166          80 IIADTPGHEQ------YT---RNM--VTGASTADLAILLVDARKG  113 (208)
T ss_pred             EEEECCcHHH------HH---HHH--HHhhhhCCEEEEEEECCCC
Confidence            9999999521      11   111  2234578999999999764

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.07  E-value=5.3e-10  Score=86.13  Aligned_cols=76  Identities=24%  Similarity=0.281  Sum_probs=49.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|++|+|||||+|+|.+...   ..   ..|....+...    .+|||||+.... .+.    ...+  +...+.+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~~~~----~~iDtpG~~~~~-~~~----~~~~--~~~~~~a   65 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEFNDK----GDIDTPGEYFSH-PRW----YHAL--ITTLQDV   65 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEECCC----CcccCCccccCC-HHH----HHHH--HHHHhcC
Confidence            799999999999999999998631   11   23333333221    269999986432 111    1222  2234678


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      |++++|+|++..+
T Consensus        66 d~il~v~d~~~~~   78 (158)
T PRK15467         66 DMLIYVHGANDPE   78 (158)
T ss_pred             CEEEEEEeCCCcc
Confidence            9999999998664

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.06  E-value=7.3e-10  Score=88.24  Aligned_cols=85  Identities=21%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCC---CceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---GLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~---g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|+|||||+|+|++...........   .+|++...+..  ...+.+|||||++......      .+++..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------~~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP------DDYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH------HHHHHH
Confidence            479999999999999999999853111111111   24444443332  3579999999998643221      111111


Q ss_pred             hccCceeEEEEEEecC
Q 029512          168 SYRNFWSCTCFLIYIF  183 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s  183 (192)
                      .....+|.++++.|.+
T Consensus        76 ~~~~~~d~~l~v~~~~   91 (197)
T cd04104          76 MKFSEYDFFIIISSTR   91 (197)
T ss_pred             hCccCcCEEEEEeCCC
Confidence            1234568888876654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.06  E-value=1.2e-09  Score=85.63  Aligned_cols=83  Identities=18%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..+|+++|.+|||||||++++.... .....++.|.+.......    .+..+.+|||||.      +.....|..+   
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------~~~~~~~~~~---   72 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNE-FVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ------EKLRPLWKSY---   72 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC-cCCcCCccccceeEEEeeccCCCceEEEEEECCCc------HhHHHHHHHH---
Confidence            3589999999999999999998763 222222223222222221    2467999999994      2223344443   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.+|++++|+|+++++
T Consensus        73 --~~~~d~ii~v~D~~~~~   89 (183)
T cd04152          73 --TRCTDGIVFVVDSVDVE   89 (183)
T ss_pred             --hccCCEEEEEEECCCHH
Confidence              34689999999998764

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04151 Arl1 Arl1 subfamily

Probab=99.06  E-value=1.2e-09  Score=83.18  Aligned_cols=79  Identities=20%  Similarity=0.204  Sum_probs=51.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|.+|+|||||+++|.... .....+..+.+.. .....+..+.+|||||...      ....|..+.     ..+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~------~~~~~~~~~-----~~~   67 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGE-VVTTIPTIGFNVE-TVTYKNLKFQVWDLGGQTS------IRPYWRCYY-----SNT   67 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCC-CcCcCCccCcCeE-EEEECCEEEEEEECCCCHH------HHHHHHHHh-----cCC
Confidence            58999999999999999997653 2222222222221 1222467899999999632      223343332     368


Q ss_pred             eEEEEEEecCCc
Q 029512          174 SCTCFLIYIFYT  185 (192)
Q Consensus       174 ~~v~~vvD~s~~  185 (192)
                      +++++|+|++.+
T Consensus        68 ~~ii~v~d~~~~   79 (158)
T cd04151          68 DAIIYVVDSTDR   79 (158)
T ss_pred             CEEEEEEECCCH
Confidence            999999999765

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PLN03118 Rab family protein; Provisional

Probab=99.06  E-value=2e-09  Score=86.32  Aligned_cols=84  Identities=19%  Similarity=0.142  Sum_probs=54.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|||||||+++|++. ......+..+.+........   ...+.+|||||...      ....+..+   
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~~~~---   82 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER------FRTLTSSY---   82 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh------hHHHHHHH---
Confidence            3469999999999999999999986 33333444444333332322   24689999999532      11122222   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.+|++++|+|+++++
T Consensus        83 --~~~~d~~vlv~D~~~~~   99 (211)
T PLN03118         83 --YRNAQGIILVYDVTRRE   99 (211)
T ss_pred             --HhcCCEEEEEEECCCHH
Confidence              24678899999987653

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.06  E-value=3.9e-10  Score=94.91  Aligned_cols=64  Identities=23%  Similarity=0.434  Sum_probs=38.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeec-CCC------CceeEEE----EEe---eCCeEEEEECCCCCCCCChHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKP------GLTQTIN----FFK---LGTKLCLVDLPGYGFAYAKEEV  157 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~~------g~T~~~~----~~~---~~~~~~lvDtPG~~~~~~~~~~  157 (192)
                      .+|+++|.+|+|||||||+|++.. ..... ..+      ..|....    ...   ....+.++|||||++....+..
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            589999999999999999999874 22221 000      1111111    111   1357899999999986655433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.05  E-value=2e-09  Score=82.33  Aligned_cols=81  Identities=15%  Similarity=0.071  Sum_probs=51.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||+|++.+.. .. ....+..+.+.  ....   ....+.+|||||..      .....+..+   
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~---   71 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDT-YT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE------RFRTITSSY---   71 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC-CC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH------hHHHHHHHH---
Confidence            489999999999999999999863 21 12222222222  1111   23468999999942      122222222   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.+|++++|+|+++++
T Consensus        72 --~~~~~~ii~v~d~~~~~   88 (166)
T cd01869          72 --YRGAHGIIIVYDVTDQE   88 (166)
T ss_pred             --hCcCCEEEEEEECcCHH
Confidence              24689999999997753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.05  E-value=1.5e-09  Score=81.23  Aligned_cols=80  Identities=19%  Similarity=0.259  Sum_probs=50.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE-EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~-~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .|+++|++|||||||+|+|++....  ....+....... ....+..+.++||||..      .....+..+.     +.
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~------~~~~~~~~~~-----~~   67 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFS--EDTIPTVGFNMRKVTKGNVTLKVWDLGGQP------RFRSMWERYC-----RG   67 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCC--cCccCCCCcceEEEEECCEEEEEEECCCCH------hHHHHHHHHH-----hc
Confidence            3789999999999999999987321  111221111111 11234678999999952      2223343332     45


Q ss_pred             eeEEEEEEecCCce
Q 029512          173 WSCTCFLIYIFYTN  186 (192)
Q Consensus       173 ~~~v~~vvD~s~~~  186 (192)
                      +|.+++|+|+++++
T Consensus        68 ~d~ii~v~d~~~~~   81 (159)
T cd04159          68 VNAIVYVVDAADRT   81 (159)
T ss_pred             CCEEEEEEECCCHH
Confidence            78999999988643

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.05  E-value=1.9e-10  Score=97.86  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=68.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCC-CCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGF-AYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~-~~~~~~~~~~~~~~~~l~  168 (192)
                      -|++||.||+||||||++++..+  ..++++|+||..++...    .+..+.+-|.||+.. +.....+-..|     |+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~F-----Lr  233 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRF-----LR  233 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHH-----HH
Confidence            56899999999999999999986  78899999999986332    356799999999976 44444444444     66


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      +..-+.++++|||.+..+
T Consensus       234 HIERt~vL~hviD~s~~~  251 (369)
T COG0536         234 HIERTRVLLHVIDLSPID  251 (369)
T ss_pred             HHHhhheeEEEEecCccc
Confidence            677789999999998654

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.05  E-value=1.9e-09  Score=84.64  Aligned_cols=82  Identities=16%  Similarity=0.215  Sum_probs=56.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|+|||||++.+... ......++.|.+.. .....+..+.+|||||-      +.....|..+.     +
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~-~~~~~~pt~g~~~~-~~~~~~~~~~i~D~~Gq------~~~~~~~~~~~-----~   83 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLG-EIVTTIPTIGFNVE-TVEYKNISFTVWDVGGQ------DKIRPLWRHYF-----Q   83 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccC-CCccccCCcceeEE-EEEECCEEEEEEECCCC------HHHHHHHHHHh-----c
Confidence            368999999999999999999865 22333333333322 12224678999999993      33344554443     4


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|+++++
T Consensus        84 ~a~~iI~V~D~s~~~   98 (181)
T PLN00223         84 NTQGLIFVVDSNDRD   98 (181)
T ss_pred             cCCEEEEEEeCCcHH
Confidence            679999999998764

>cd01850 CDC_Septin CDC/Septin

Probab=99.04  E-value=2e-09  Score=90.42  Aligned_cols=63  Identities=27%  Similarity=0.386  Sum_probs=41.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCC-------CCceeEEEE----E-eeC--CeEEEEECCCCCCCCChH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINF----F-KLG--TKLCLVDLPGYGFAYAKE  155 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-------~g~T~~~~~----~-~~~--~~~~lvDtPG~~~~~~~~  155 (192)
                      ..+|+++|.+|+|||||+|+|++.. .......       ...|.....    . ..|  ..+.+||||||++....+
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~   80 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS   80 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCC-CccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch
Confidence            4589999999999999999999873 3332211       112222211    1 123  469999999999865443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01889 SelB_euk SelB subfamily

Probab=99.04  E-value=6.1e-10  Score=87.96  Aligned_cols=80  Identities=20%  Similarity=0.267  Sum_probs=53.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccC-----ceeecCCCCceeEEEEE---e--------------eCCeEEEEECCCCCCC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWG-----VVRTSDKPGLTQTINFF---K--------------LGTKLCLVDLPGYGFA  151 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~-----~~~~~~~~g~T~~~~~~---~--------------~~~~~~lvDtPG~~~~  151 (192)
                      +|+++|.+|+|||||+|+|++...     .......+|+|.+..+.   .              .+..+.+|||||..  
T Consensus         2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--   79 (192)
T cd01889           2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA--   79 (192)
T ss_pred             eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence            689999999999999999997311     11223344666655321   1              15689999999962  


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                         .    .+..+  +.....+|.+++|+|++.
T Consensus        80 ---~----~~~~~--~~~~~~~d~vi~VvD~~~  103 (192)
T cd01889          80 ---S----LIRTI--IGGAQIIDLMLLVVDATK  103 (192)
T ss_pred             ---H----HHHHH--HHHHhhCCEEEEEEECCC
Confidence               1    12222  233456799999999975

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=99.04  E-value=7.4e-11  Score=101.98  Aligned_cols=62  Identities=31%  Similarity=0.562  Sum_probs=56.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~  153 (192)
                      ....|++||+||+||||+||+|... +++.+++.||-|.-.++..+-..++|||+||+..+..
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~  367 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSS  367 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCCCC
Confidence            4568999999999999999999998 7999999999999888888889999999999987654

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.03  E-value=2.7e-09  Score=82.02  Aligned_cols=84  Identities=18%  Similarity=0.088  Sum_probs=52.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|++|+|||||+|++++........+..+.+.......   ....+.+|||||-.      .....+..+    
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~------~~~~~~~~~----   72 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE------RFRTITTAY----   72 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH------HHHHHHHHH----
Confidence            35899999999999999999998731111122223322222222   23468999999932      112222222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+++|+++++.|+++++
T Consensus        73 -~~~ad~~i~v~d~~~~~   89 (167)
T cd01867          73 -YRGAMGIILVYDITDEK   89 (167)
T ss_pred             -hCCCCEEEEEEECcCHH
Confidence             35689999999987543

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.03  E-value=2e-09  Score=81.25  Aligned_cols=79  Identities=14%  Similarity=0.059  Sum_probs=46.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||+|++++...   ......++.+   ......+  ..+.+|||||-..      ....+..+   
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~l~~~~---   69 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE------YSAMRDQY---   69 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC---cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc------hHHHHHHH---
Confidence            4799999999999999999998631   2222222221   1111112  3477899999421      12223222   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.++.+++|+|.+++
T Consensus        70 --~~~~~~~i~v~~~~~~   85 (162)
T cd04138          70 --MRTGEGFLCVFAINSR   85 (162)
T ss_pred             --HhcCCEEEEEEECCCH
Confidence              2346777888777654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04122 Rab14 Rab14 subfamily

Probab=99.02  E-value=3.2e-09  Score=81.44  Aligned_cols=83  Identities=18%  Similarity=0.174  Sum_probs=50.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||++++.+...........+.+........   ...+.+|||||-      +.....+..     .
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------~~~~~~~~~-----~   71 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ------ERFRAVTRS-----Y   71 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCc------HHHHHHHHH-----H
Confidence            48999999999999999999986311111112222222122222   346899999993      222222222     2


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|+|.++++
T Consensus        72 ~~~~~~~ilv~d~~~~~   88 (166)
T cd04122          72 YRGAAGALMVYDITRRS   88 (166)
T ss_pred             hcCCCEEEEEEECCCHH
Confidence            35789999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04113 Rab4 Rab4 subfamily

Probab=99.02  E-value=2.5e-09  Score=81.35  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=49.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|||||||+|+|++...........+..........   ...+.+|||||..      .....+..     ..
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~------~~~~~~~~-----~~   70 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE------RFRSVTRS-----YY   70 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH------HHHHhHHH-----Hh
Confidence            7899999999999999999986321211222222222121222   3468899999942      11112222     23


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                      +.+|++++|+|.+++
T Consensus        71 ~~~~~~i~v~d~~~~   85 (161)
T cd04113          71 RGAAGALLVYDITNR   85 (161)
T ss_pred             cCCCEEEEEEECCCH
Confidence            467899999998774

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.02  E-value=1.5e-09  Score=84.06  Aligned_cols=81  Identities=14%  Similarity=0.149  Sum_probs=52.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceee--------------cCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHH
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEE  156 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~--------------~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~  156 (192)
                      +|+++|.+|+|||||+|+|++.......              ....+.|.+.....   .+..+.+|||||+..      
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------   74 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------   74 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence            4899999999999999999987421111              11234454433222   357799999999642      


Q ss_pred             HHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          157 VKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ....+..     ..+.+|++++|+|++++
T Consensus        75 ~~~~~~~-----~~~~~d~~i~v~d~~~~   98 (189)
T cd00881          75 FSSEVIR-----GLSVSDGAILVVDANEG   98 (189)
T ss_pred             HHHHHHH-----HHHhcCEEEEEEECCCC
Confidence            1112222     12468999999999865

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=2.5e-10  Score=93.19  Aligned_cols=65  Identities=28%  Similarity=0.408  Sum_probs=43.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC------ceeEEEEE-------eeCCeEEEEECCCCCCCCChHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG------LTQTINFF-------KLGTKLCLVDLPGYGFAYAKEE  156 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g------~T~~~~~~-------~~~~~~~lvDtPG~~~~~~~~~  156 (192)
                      -.+.|++||++|.|||||+|+|+.++ +...+..++      .|.+....       ...-++.++||||||+....+.
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            35799999999999999999999873 222222111      22222211       1234689999999999766653

>cd04124 RabL2 RabL2 subfamily

Probab=99.02  E-value=2.8e-09  Score=81.63  Aligned_cols=82  Identities=15%  Similarity=0.043  Sum_probs=49.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .+|+++|.+|||||||++.+.+.. .... ....+.+.......   ....+.+|||||..      .....+..+    
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~~~~~~~~----   69 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDG-YEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE------RFQTMHASY----   69 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch------hhhhhhHHH----
Confidence            378999999999999999999763 2111 11112221111111   23467899999942      112222222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|++++.
T Consensus        70 -~~~~d~~i~v~d~~~~~   86 (161)
T cd04124          70 -YHKAHACILVFDVTRKI   86 (161)
T ss_pred             -hCCCCEEEEEEECCCHH
Confidence             34679999999987653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01865 Rab3 Rab3 subfamily

Probab=99.02  E-value=2.8e-09  Score=81.80  Aligned_cols=83  Identities=17%  Similarity=0.086  Sum_probs=50.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-e--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++.+........+..|.+....... .  ...+.+|||||..      .....+.     ..
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~------~~~~~~~-----~~   70 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE------RYRTITT-----AY   70 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH------HHHHHHH-----HH
Confidence            4799999999999999999998731111112222221111111 1  3568999999942      1122222     22


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|+|+++++
T Consensus        71 ~~~~~~~l~v~d~~~~~   87 (165)
T cd01865          71 YRGAMGFILMYDITNEE   87 (165)
T ss_pred             ccCCcEEEEEEECCCHH
Confidence            45788899999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.02  E-value=3.4e-10  Score=100.26  Aligned_cols=97  Identities=20%  Similarity=0.185  Sum_probs=71.8

Q ss_pred             cccCCC--CCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC---CeEEEEECCCCCCCCChHHH
Q 029512           83 VSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEV  157 (192)
Q Consensus        83 ~~~~~~--~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~---~~~~lvDtPG~~~~~~~~~~  157 (192)
                      ..+..|  .++..+++++|+|||||||++|.++...  ..+.++++||+..-..+.+   ..|+++||||+.+....+..
T Consensus       157 hl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN  234 (620)
T KOG1490|consen  157 HLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN  234 (620)
T ss_pred             HHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh
Confidence            334555  4678899999999999999999999875  7789999999987665554   46899999999886554444


Q ss_pred             HHHHHHHHhhhccCceeEEEEEEecC
Q 029512          158 KDAWEELVSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~v~~vvD~s  183 (192)
                      .....++..+.+.+  ..|++++|.|
T Consensus       235 ~IEmqsITALAHLr--aaVLYfmDLS  258 (620)
T KOG1490|consen  235 IIEMQIITALAHLR--SAVLYFMDLS  258 (620)
T ss_pred             HHHHHHHHHHHHhh--hhheeeeech
Confidence            44445554444444  4578888865

>cd01862 Rab7 Rab7 subfamily

Probab=99.01  E-value=4.4e-09  Score=80.49  Aligned_cols=81  Identities=15%  Similarity=0.126  Sum_probs=49.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      +|+++|++|+|||||+|++++.. .... ....+.+.......   ....+.+|||||...      ....+..+     
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~-----   69 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER------FQSLGVAF-----   69 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH------HHhHHHHH-----
Confidence            79999999999999999999873 2111 11222211111111   124567999999421      11223222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|.+++++|++++.
T Consensus        70 ~~~~d~~i~v~d~~~~~   86 (172)
T cd01862          70 YRGADCCVLVYDVTNPK   86 (172)
T ss_pred             hcCCCEEEEEEECCCHH
Confidence            35678999999987653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.01  E-value=1.6e-09  Score=80.98  Aligned_cols=76  Identities=18%  Similarity=0.232  Sum_probs=50.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|.+|||||||+|++++.. ..    . ..|....+.  +   .+|||||...     .....+..+.  ...+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~-~~----~-~~t~~~~~~--~---~~iDt~G~~~-----~~~~~~~~~~--~~~~~a   63 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEE-IL----Y-KKTQAVEYN--D---GAIDTPGEYV-----ENRRLYSALI--VTAADA   63 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCc-cc----c-ccceeEEEc--C---eeecCchhhh-----hhHHHHHHHH--HHhhcC
Confidence            78999999999999999999873 21    1 123322221  1   6899999631     1111233332  236789


Q ss_pred             eEEEEEEecCCceE
Q 029512          174 SCTCFLIYIFYTNV  187 (192)
Q Consensus       174 ~~v~~vvD~s~~~~  187 (192)
                      |++++|+|++++..
T Consensus        64 d~vilv~d~~~~~s   77 (142)
T TIGR02528        64 DVIALVQSATDPES   77 (142)
T ss_pred             CEEEEEecCCCCCc
Confidence            99999999987753

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04127 Rab27A Rab27a subfamily

Probab=99.00  E-value=3.4e-09  Score=82.12  Aligned_cols=84  Identities=18%  Similarity=0.058  Sum_probs=50.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-------------eCCeEEEEECCCCCCCCChHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------------LGTKLCLVDLPGYGFAYAKEEVK  158 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-------------~~~~~~lvDtPG~~~~~~~~~~~  158 (192)
                      ..+|+++|.+|||||||+|++.+...........+.........             ....+.+|||||-      +...
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~~~   77 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ------ERFR   77 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh------HHHH
Confidence            35899999999999999999998632111112222111111111             1256899999992      2222


Q ss_pred             HHHHHHHhhhccCceeEEEEEEecCCce
Q 029512          159 DAWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+..+     .++++++++|.|.++++
T Consensus        78 ~~~~~~-----~~~~~~~i~v~d~~~~~  100 (180)
T cd04127          78 SLTTAF-----FRDAMGFLLIFDLTNEQ  100 (180)
T ss_pred             HHHHHH-----hCCCCEEEEEEECCCHH
Confidence            222222     34689999999987653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.00  E-value=3.6e-09  Score=80.38  Aligned_cols=79  Identities=14%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EE-eeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~-~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|+|||||+|++.+..   .+.....++.+..  .. ..+  ..+.+|||||...      ....+..+   
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~~~~~---   70 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE------FSAMREQY---   70 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc------hhHHHHHH---
Confidence            589999999999999999999863   2333333333211  11 112  4688999999532      11122222   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.+|.+++|+|++++
T Consensus        71 --~~~~~~~ilv~d~~~~   86 (164)
T cd04145          71 --MRTGEGFLLVFSVTDR   86 (164)
T ss_pred             --HhhCCEEEEEEECCCH
Confidence              2357888999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd00879 Sar1 Sar1 subfamily

Probab=99.00  E-value=4.2e-09  Score=82.50  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|++|+|||||+|.+.+.. .....+..+.+.. .....+..+.++||||..      .....|..+     .+
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~-~~~~~~T~~~~~~-~i~~~~~~~~l~D~~G~~------~~~~~~~~~-----~~   85 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPTSE-ELTIGNIKFKTFDLGGHE------QARRLWKDY-----FP   85 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccCcceE-EEEECCEEEEEEECCCCH------HHHHHHHHH-----hc
Confidence            4689999999999999999999863 2222222222221 222236788999999942      122333333     24


Q ss_pred             ceeEEEEEEecCCc
Q 029512          172 FWSCTCFLIYIFYT  185 (192)
Q Consensus       172 ~~~~v~~vvD~s~~  185 (192)
                      .++.+++|+|++++
T Consensus        86 ~ad~iilV~D~~~~   99 (190)
T cd00879          86 EVDGIVFLVDAADP   99 (190)
T ss_pred             cCCEEEEEEECCcH
Confidence            56899999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.99  E-value=3.9e-09  Score=80.11  Aligned_cols=80  Identities=20%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe-----eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~-----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      +|+++|.+|+|||||+|++++... . ....+..+.+.  ....     ....+.+|||||.      +.....+..   
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~~~~~~---   70 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIF-T-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ------EEFDAITKA---   70 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch------HHHHHhHHH---
Confidence            799999999999999999998631 1 11112122221  1111     1356899999993      212222222   


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                        ..+.++.+++|.|+++++
T Consensus        71 --~~~~~~~~v~v~d~~~~~   88 (162)
T cd04106          71 --YYRGAQACILVFSTTDRE   88 (162)
T ss_pred             --HhcCCCEEEEEEECCCHH
Confidence              234678888998887654

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.99  E-value=4.1e-09  Score=80.79  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|.+|||||||++++.... .....++.|.... ........+.+|||||..      .....|..+     .+.+
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~-~~~~~pt~g~~~~-~~~~~~~~~~l~D~~G~~------~~~~~~~~~-----~~~a   68 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKNISFTVWDVGGQD------KIRPLWRHY-----FQNT   68 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CcccCCCCCcceE-EEEECCEEEEEEECCCCH------hHHHHHHHH-----hcCC
Confidence            78999999999999999996542 2222222232221 112236779999999963      222334333     3568


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      |++++|+|++.++
T Consensus        69 d~~i~v~D~~~~~   81 (159)
T cd04150          69 QGLIFVVDSNDRE   81 (159)
T ss_pred             CEEEEEEeCCCHH
Confidence            9999999997653

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.99  E-value=1.4e-09  Score=82.63  Aligned_cols=76  Identities=22%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCC-CCCCCChHHHHHHHHHHHhhhccC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG-~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      .+|+++|++|+|||||+++|.+..  .    ....|+.+.+..     .++|||| |...   -   .....+  +....
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~--~----~~~KTq~i~~~~-----~~IDTPGEyiE~---~---~~y~aL--i~ta~   62 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE--I----RYKKTQAIEYYD-----NTIDTPGEYIEN---P---RFYHAL--IVTAQ   62 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC--C----CcCccceeEecc-----cEEECChhheeC---H---HHHHHH--HHHHh
Confidence            489999999999999999999963  1    234566666543     4599999 3321   1   122233  33456


Q ss_pred             ceeEEEEEEecCCceE
Q 029512          172 FWSCTCFLIYIFYTNV  187 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~~  187 (192)
                      ++|.|++|.|++.+..
T Consensus        63 dad~V~ll~dat~~~~   78 (143)
T PF10662_consen   63 DADVVLLLQDATEPRS   78 (143)
T ss_pred             hCCEEEEEecCCCCCc
Confidence            7899999999988754

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.99  E-value=7.6e-10  Score=85.09  Aligned_cols=21  Identities=38%  Similarity=0.626  Sum_probs=20.1

Q ss_pred             EEEEecCCCcHHHHHHHHhhc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~  115 (192)
                      |+++|..++|||||||+|+|.
T Consensus         1 V~v~G~~ssGKSTliNaLlG~   21 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGR   21 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTS
T ss_pred             CEEEcCCCCCHHHHHHHHHhc
Confidence            689999999999999999997

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.99  E-value=2.6e-09  Score=82.35  Aligned_cols=81  Identities=15%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      .|+++|.+|||||||++.+.+........+..|... ......+..+.+|||||-..      ....|..+     .+.+
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~-~~i~~~~~~l~i~Dt~G~~~------~~~~~~~~-----~~~a   68 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS-VAIPTQDAIMELLEIGGSQN------LRKYWKRY-----LSGS   68 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce-EEEeeCCeEEEEEECCCCcc------hhHHHHHH-----HhhC
Confidence            478999999999999999997632222222333221 12223367799999999532      22334333     3467


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      |++++|+|++++.
T Consensus        69 d~ii~V~D~t~~~   81 (164)
T cd04162          69 QGLIFVVDSADSE   81 (164)
T ss_pred             CEEEEEEECCCHH
Confidence            9999999987753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.99  E-value=4.1e-09  Score=82.83  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=53.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||++.+... ......++.|.... .....+..+.+|||||..      .....|..+     .+
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~-~~~~~~~T~~~~~~-~~~~~~~~~~l~D~~G~~------~~~~~~~~~-----~~   83 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLG-EVVTTIPTIGFNVE-TVEYKNLKFTMWDVGGQD------KLRPLWRHY-----YQ   83 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC-CccccCCccccceE-EEEECCEEEEEEECCCCH------hHHHHHHHH-----hc
Confidence            368999999999999999999754 22222223332222 112246789999999952      223334333     34


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|+++++
T Consensus        84 ~ad~iI~v~D~t~~~   98 (182)
T PTZ00133         84 NTNGLIFVVDSNDRE   98 (182)
T ss_pred             CCCEEEEEEeCCCHH
Confidence            689999999997653

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.98  E-value=4.4e-09  Score=81.92  Aligned_cols=82  Identities=16%  Similarity=0.186  Sum_probs=53.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|+|||||++.+... ......++.|.... ........+.+|||||..      .....|..+     .+
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~-~~~~~~~t~~~~~~-~~~~~~~~l~l~D~~G~~------~~~~~~~~~-----~~   79 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLG-ESVTTIPTIGFNVE-TVTYKNISFTVWDVGGQD------KIRPLWRHY-----YT   79 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC-CCCCcCCccccceE-EEEECCEEEEEEECCCCh------hhHHHHHHH-----hC
Confidence            469999999999999999999654 22222122222111 111236779999999952      223344443     35


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|+++++
T Consensus        80 ~ad~ii~v~D~t~~~   94 (175)
T smart00177       80 NTQGLIFVVDSNDRD   94 (175)
T ss_pred             CCCEEEEEEECCCHH
Confidence            689999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=98.98  E-value=2.9e-09  Score=82.29  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=50.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|||||||+|++.+. ...  .  ...|....   ....+..+.+|||||...      ....|..+     .
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~-~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~------~~~~~~~~-----~   64 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQD-EFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHK------LRPLWKHY-----Y   64 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcC-CCC--C--cCCcCceeEEEEEECCEEEEEEECCCChh------cchHHHHH-----h
Confidence            4789999999999999999986 222  2  12222221   222367899999999642      12233332     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|.+++|+|+++++
T Consensus        65 ~~ad~ii~V~D~s~~~   80 (169)
T cd04158          65 LNTQAVVFVVDSSHRD   80 (169)
T ss_pred             ccCCEEEEEEeCCcHH
Confidence            4679999999987763

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.1e-09  Score=94.26  Aligned_cols=100  Identities=20%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCcee-----ecCCCCceeEEEEEe-------eCCeEEEEECCCCCCCCChHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----TSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEV  157 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~-----~~~~~g~T~~~~~~~-------~~~~~~lvDtPG~~~~~~~~~~  157 (192)
                      .-.++++++|.+|.|||||||+|++..-...     ....+..|.......       ...++.++||||||+....+..
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            3467999999999999999999998731111     111121232222111       1356899999999986555433


Q ss_pred             HHHHHHHHh------hhccCceeEEEEEEecCCceEEEEeC
Q 029512          158 KDAWEELVS------ISYRNFWSCTCFLIYIFYTNVIILYF  192 (192)
Q Consensus       158 ~~~~~~~~~------l~~~~~~~~v~~vvD~s~~~~~~~~~  192 (192)
                      .+.+..+++      +.+...+++ --..| ...|+| |||
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R-~~~~D-~RVH~c-LYF  136 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNR-SKIKD-NRVHCC-LYF  136 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCc-ccccC-CceEEE-EEE
Confidence            333333333      333344444 33333 445666 444

>PTZ00369 Ras-like protein; Provisional

Probab=98.98  E-value=3.4e-09  Score=83.47  Aligned_cols=84  Identities=11%  Similarity=-0.023  Sum_probs=51.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||++++.+........+..+.+.......  ....+.+|||||...      ....+..+     
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~l~~~~-----   73 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE------YSAMRDQY-----   73 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc------chhhHHHH-----
Confidence            46999999999999999999998632122222223222211111  234577899999532      11223222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|+|+++++
T Consensus        74 ~~~~d~iilv~D~s~~~   90 (189)
T PTZ00369         74 MRTGQGFLCVYSITSRS   90 (189)
T ss_pred             hhcCCEEEEEEECCCHH
Confidence            23678899999987764

>cd01893 Miro1 Miro1 subfamily

Probab=98.97  E-value=2.1e-09  Score=82.67  Aligned_cols=82  Identities=16%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      +|+++|.+|||||||+|++.+......... .+.+|...........+.+|||||....      ...+..     ....
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~-----~~~~   70 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD------RANLAA-----EIRK   70 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhh------hHHHhh-----hccc
Confidence            789999999999999999998632111111 1122322222223567899999996421      111211     1256


Q ss_pred             eeEEEEEEecCCce
Q 029512          173 WSCTCFLIYIFYTN  186 (192)
Q Consensus       173 ~~~v~~vvD~s~~~  186 (192)
                      +|++++|+|+++++
T Consensus        71 ad~~ilv~d~~~~~   84 (166)
T cd01893          71 ANVICLVYSVDRPS   84 (166)
T ss_pred             CCEEEEEEECCCHH
Confidence            78899999987754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01890 LepA LepA subfamily

Probab=98.97  E-value=3.2e-09  Score=82.10  Aligned_cols=81  Identities=16%  Similarity=0.117  Sum_probs=50.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCc-------eeec------CCCCceeEEEEEe--------eCCeEEEEECCCCCCCC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTINFFK--------LGTKLCLVDLPGYGFAY  152 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~-------~~~~------~~~g~T~~~~~~~--------~~~~~~lvDtPG~~~~~  152 (192)
                      +|+++|.+|+|||||+|+|++....       ....      ...|+|.......        .+..+.+|||||...  
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--   79 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD--   79 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence            6899999999999999999974210       0000      1224444332111        245688999999743  


Q ss_pred             ChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          153 AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                          ....+...     .+.+|++++|+|++..
T Consensus        80 ----~~~~~~~~-----~~~ad~~i~v~D~~~~  103 (179)
T cd01890          80 ----FSYEVSRS-----LAACEGALLLVDATQG  103 (179)
T ss_pred             ----hHHHHHHH-----HHhcCeEEEEEECCCC
Confidence                11122221     2357999999999764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04110 Rab35 Rab35 subfamily

Probab=98.97  E-value=6.9e-09  Score=82.52  Aligned_cols=84  Identities=18%  Similarity=0.096  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||++.+.+.........+.+..........   ...+.||||||-.      .....+..+    
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~------~~~~~~~~~----   75 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE------RFRTITSTY----   75 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch------hHHHHHHHH----
Confidence            569999999999999999999986311111222222221122221   2468899999942      111222222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.++++++|+|+++++
T Consensus        76 -~~~a~~iilv~D~~~~~   92 (199)
T cd04110          76 -YRGTHGVIVVYDVTNGE   92 (199)
T ss_pred             -hCCCcEEEEEEECCCHH
Confidence             34578899999987654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.97  E-value=4.6e-09  Score=83.52  Aligned_cols=82  Identities=12%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      +|+++|.+|||||||+|++++........++.+..........    ...+.+|||||-.      .....+..+     
T Consensus         2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~------~~~~~~~~~-----   70 (201)
T cd04107           2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE------RFGGMTRVY-----   70 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch------hhhhhHHHH-----
Confidence            7899999999999999999986311111111111111122222    2458899999952      122223222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .++++++++|+|.++++
T Consensus        71 ~~~a~~~ilv~D~t~~~   87 (201)
T cd04107          71 YRGAVGAIIVFDVTRPS   87 (201)
T ss_pred             hCCCCEEEEEEECCCHH
Confidence            35779999999988653

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.96  E-value=1.9e-09  Score=92.45  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=58.9

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceee----cCCCC---ceeEEEEEe-------eCCeEEEEECCCCCCCCChH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----SDKPG---LTQTINFFK-------LGTKLCLVDLPGYGFAYAKE  155 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~----~~~~g---~T~~~~~~~-------~~~~~~lvDtPG~~~~~~~~  155 (192)
                      .-..+|+++|.+|.||||++|+|++.. ....    ...+.   .|.......       ....+.++||||||+....+
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs   99 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS   99 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence            346799999999999999999999973 1111    11111   222222211       13578999999999865554


Q ss_pred             HHHHHHHHHHh------hhccCceeEEEEEEecCCceEEEEeC
Q 029512          156 EVKDAWEELVS------ISYRNFWSCTCFLIYIFYTNVIILYF  192 (192)
Q Consensus       156 ~~~~~~~~~~~------l~~~~~~~~v~~vvD~s~~~~~~~~~  192 (192)
                      ...+.+..+++      |.+....++--...| ...|+| |||
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D-~RVH~c-LYF  140 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKD-TRVHAC-LYF  140 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhcccccccccc-CceEEE-EEE
Confidence            43333333333      444444555444555 455666 444

>cd04123 Rab21 Rab21 subfamily

Probab=98.96  E-value=8.4e-09  Score=77.81  Aligned_cols=80  Identities=11%  Similarity=0.082  Sum_probs=49.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|++|+|||||+|++++.. ... ...+.++...  ....   ....+.+|||||-.      .....+..+    
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~~~~~~~~----   69 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENK-FNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE------RYHALGPIY----   69 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC-CCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH------HHHHhhHHH----
Confidence            78999999999999999999873 221 1111111111  1111   12468999999931      112222222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       ..++|++++|+|+++++
T Consensus        70 -~~~~~~~i~v~d~~~~~   86 (162)
T cd04123          70 -YRDADGAILVYDITDAD   86 (162)
T ss_pred             -hccCCEEEEEEECCCHH
Confidence             24679999999987764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.95  E-value=3.8e-09  Score=78.26  Aligned_cols=54  Identities=37%  Similarity=0.457  Sum_probs=41.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--Ee-eC--CeEEEEECCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LG--TKLCLVDLPGY  148 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~~-~~--~~~~lvDtPG~  148 (192)
                      .+|+++|.+|+|||||+|+|++..  ......+++|.+...  .. .+  ..+.+|||||.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   60 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ   60 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence            589999999999999999999974  555666677766543  22 23  57899999994

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.95  E-value=8.8e-09  Score=79.45  Aligned_cols=83  Identities=18%  Similarity=0.144  Sum_probs=50.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHH-HHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVK-DAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~-~~~~~~~~l~  168 (192)
                      .+|+++|.+|+|||||++++++...........+..........   ...+.+|||||..      ... ..+..+    
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~~~~~~~~~----   72 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE------RFRKSMVQHY----   72 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH------HHHHhhHHHh----
Confidence            58999999999999999999976311111122221111111221   3578999999942      111 112222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+++|++++|+|.+.+.
T Consensus        73 -~~~~d~~i~v~d~~~~~   89 (170)
T cd04115          73 -YRNVHAVVFVYDVTNMA   89 (170)
T ss_pred             -hcCCCEEEEEEECCCHH
Confidence             35689999999998754

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.94  E-value=6e-09  Score=82.38  Aligned_cols=81  Identities=21%  Similarity=0.219  Sum_probs=52.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc-Cceee-------------cCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW-GVVRT-------------SDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE  155 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~-~~~~~-------------~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~  155 (192)
                      .+|+++|.+|+|||||+|+|++.. .....             ....|+|....   ....+..+.+|||||...     
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~-----   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD-----   77 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence            489999999999999999999731 11110             01234444432   223467899999999632     


Q ss_pred             HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          156 EVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       ....+..     ..+.+|++++|+|++.
T Consensus        78 -~~~~~~~-----~~~~~d~~ilV~d~~~  100 (194)
T cd01891          78 -FGGEVER-----VLSMVDGVLLLVDASE  100 (194)
T ss_pred             -HHHHHHH-----HHHhcCEEEEEEECCC
Confidence             1122222     2346799999999876

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04175 Rap1 Rap1 subgroup

Probab=98.94  E-value=7.1e-09  Score=79.14  Aligned_cols=78  Identities=12%  Similarity=0.001  Sum_probs=45.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||+++++...   .....+.++.+.   .....  ...+.+|||||...      ....+..+   
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~---   69 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ------FTAMRDLY---   69 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc------chhHHHHH---
Confidence            479999999999999999999652   222233333221   11112  34567999999532      11122222   


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                        .+.+|++++|.|.+.
T Consensus        70 --~~~~d~~ilv~d~~~   84 (164)
T cd04175          70 --MKNGQGFVLVYSITA   84 (164)
T ss_pred             --HhhCCEEEEEEECCC
Confidence              124566777777654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04109 Rab28 Rab28 subfamily

Probab=98.94  E-value=8.3e-09  Score=83.05  Aligned_cols=79  Identities=15%  Similarity=0.109  Sum_probs=49.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      +|+++|.+|||||||+|.+++.. +. ....+..+.+..  ....    ...+.+|||||..      .....+..+   
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~-~~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~------~~~~l~~~~---   70 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEG-FG-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS------IGGKMLDKY---   70 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC-CC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH------HHHHHHHHH---
Confidence            78999999999999999999863 11 111222222321  1111    3468899999932      112222222   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.+|++++|+|++++
T Consensus        71 --~~~ad~iilV~D~t~~   86 (215)
T cd04109          71 --IYGAHAVFLVYDVTNS   86 (215)
T ss_pred             --hhcCCEEEEEEECCCH
Confidence              3578999999999875

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.94  E-value=5.8e-09  Score=79.41  Aligned_cols=78  Identities=13%  Similarity=0.083  Sum_probs=47.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|.+|||||||+|++.+.. .  ......++.+.  .....   ...+.+|||||....      ...+..+    
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------~~~~~~~----   68 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGH-F--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF------SAMRDQY----   68 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc-C--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc------hHHHHHH----
Confidence            78999999999999999999863 2  22222222221  11111   346789999995321      1122222    


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                       .+.++.+++|.|+.++
T Consensus        69 -~~~~~~~i~v~d~~~~   84 (164)
T smart00173       69 -MRTGEGFLLVYSITDR   84 (164)
T ss_pred             -HhhCCEEEEEEECCCH
Confidence             2346888888888765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04125 RabA_like RabA-like subfamily

Probab=98.94  E-value=8.6e-09  Score=80.86  Aligned_cols=82  Identities=20%  Similarity=0.145  Sum_probs=51.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCcee-ecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~-~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .+|+++|.+|||||||+|++.+.. +.. ..+..+.+........   ...+.+|||||...      ....+..     
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~------~~~~~~~-----   68 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDE-FSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER------FRSLNNS-----   68 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH------HHhhHHH-----
Confidence            379999999999999999999873 221 2233333332222222   24578999999421      1112222     


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|+++++
T Consensus        69 ~~~~~d~iilv~d~~~~~   86 (188)
T cd04125          69 YYRGAHGYLLVYDVTDQE   86 (188)
T ss_pred             HccCCCEEEEEEECcCHH
Confidence            235689999999987654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=98.93  E-value=9.9e-09  Score=80.95  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=49.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|.+|+|||||++.+.+.. ....  ....+.+........   ...+.||||||-      +.....+..+    
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~~~~~~~~~----   70 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ------ERFRSVTHAY----   70 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc------HHHHHhhHHH----
Confidence            78999999999999999999863 2111  111121211112222   247899999993      2222222222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|++.++
T Consensus        71 -~~~ad~~i~v~D~~~~~   87 (191)
T cd04112          71 -YRDAHALLLLYDITNKA   87 (191)
T ss_pred             -ccCCCEEEEEEECCCHH
Confidence             34678999999987653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=98.93  E-value=7.4e-09  Score=82.66  Aligned_cols=88  Identities=15%  Similarity=0.169  Sum_probs=52.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEE-eeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFF-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~-~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|.+|||||||+|.+++.. ... ...|.++.+.  ... ..+  ..+.+|||||...-...  ..+.|... ...
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~-f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~--~~~e~~~~-~~~   76 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQE-FPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT--AGQEWMDP-RFR   76 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCC-CCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc--chhHHHHH-HHh
Confidence            78999999999999999999863 221 1122222221  111 123  46789999997531111  11122111 122


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|++.++
T Consensus        77 ~~~~ad~iilv~D~~~~~   94 (198)
T cd04142          77 GLRNSRAFILVYDICSPD   94 (198)
T ss_pred             hhccCCEEEEEEECCCHH
Confidence            346789999999998764

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.92  E-value=1.2e-08  Score=79.16  Aligned_cols=81  Identities=16%  Similarity=0.154  Sum_probs=48.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|||||||++++.+........+..+.........   ....+.+|||||..      .....+.     ...
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~~~~~~~-----~~~   70 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE------RFKCIAS-----TYY   70 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH------HHHhhHH-----HHh
Confidence            689999999999999999998631111112222121111111   13568999999952      1111221     123


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                      +.+|++++|.|++++
T Consensus        71 ~~ad~~ilv~d~~~~   85 (170)
T cd04108          71 RGAQAIIIVFDLTDV   85 (170)
T ss_pred             cCCCEEEEEEECcCH
Confidence            467888999988764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.92  E-value=2.2e-09  Score=93.34  Aligned_cols=88  Identities=24%  Similarity=0.143  Sum_probs=49.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC---CceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---GLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~---g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ...|+++|.+|+|||||||+|.|-..-...+...   .+|+++..|..  -+++.+||.||++.+..+      ..++++
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~------~~~Yl~  108 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFP------PEEYLK  108 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--------HHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCC------HHHHHH
Confidence            4599999999999999999998742111112222   36777766654  468999999999874321      112222


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                      --.-...|.++++.+.+.+
T Consensus       109 ~~~~~~yD~fiii~s~rf~  127 (376)
T PF05049_consen  109 EVKFYRYDFFIIISSERFT  127 (376)
T ss_dssp             HTTGGG-SEEEEEESSS--
T ss_pred             HccccccCEEEEEeCCCCc
Confidence            1123445788887776654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd04136 Rap_like Rap-like subfamily

Probab=98.92  E-value=7.7e-09  Score=78.45  Aligned_cols=79  Identities=11%  Similarity=0.037  Sum_probs=47.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe-e--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~-~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||+|++.+.. .  ......++.+.  .... .  ...+.+|||||...      ....+..+   
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~---   69 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGI-F--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ------FTAMRDLY---   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC-C--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc------cchHHHHH---
Confidence            489999999999999999999763 1  22222222211  1111 2  24577899999532      11122222   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.++++++|.|.+++
T Consensus        70 --~~~~~~~ilv~d~~~~   85 (163)
T cd04136          70 --IKNGQGFVLVYSITSQ   85 (163)
T ss_pred             --hhcCCEEEEEEECCCH
Confidence              2356777888877654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04144 Ras2 Ras2 subfamily

Probab=98.92  E-value=7.5e-09  Score=81.57  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=46.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|.+|||||||+|+++... +.  ...+.++.+   ......+  ..+.+|||||...      ....+..+    
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~-f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~----   67 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNH-FV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE------YTALRDQW----   67 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC-CC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchh------hHHHHHHH----
Confidence            48999999999999999999752 22  222222211   1111123  3588999999421      11122222    


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                       .+.+|++++|.|.+++
T Consensus        68 -~~~ad~~ilv~d~~~~   83 (190)
T cd04144          68 -IREGEGFILVYSITSR   83 (190)
T ss_pred             -HHhCCEEEEEEECCCH
Confidence             2356788888887665

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN03110 Rab GTPase; Provisional

Probab=98.91  E-value=1.2e-08  Score=82.26  Aligned_cols=83  Identities=20%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||++.+.+...........|..........   ...+.||||||-      +.....+..+    
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~------~~~~~~~~~~----   81 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ------ERYRAITSAY----   81 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc------HHHHHHHHHH----
Confidence            469999999999999999999986321112222232222222222   347899999993      2222222222    


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                       .+.++++++|.|++++
T Consensus        82 -~~~~~~~ilv~d~~~~   97 (216)
T PLN03110         82 -YRGAVGALLVYDITKR   97 (216)
T ss_pred             -hCCCCEEEEEEECCCh
Confidence             2467889999998765

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=98.91  E-value=1.2e-08  Score=81.73  Aligned_cols=79  Identities=23%  Similarity=0.332  Sum_probs=50.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-----eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      +.|+++|++|+|||||++.|.... ...  ..+.++.......     .+..+.+|||||..      .....+...  +
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~-~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~------~~~~~~~~~--~   69 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGK-YRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHP------KLRDKLLET--L   69 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCC-CCC--ccCcEeecceEEEeecCCCCceEEEEECCCCH------HHHHHHHHH--H
Confidence            478999999999999999999863 211  1111111111111     25779999999953      223333222  2


Q ss_pred             hccCc-eeEEEEEEecCCc
Q 029512          168 SYRNF-WSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~-~~~v~~vvD~s~~  185 (192)
                         +. ++++++|+|++..
T Consensus        70 ---~~~~~~vV~VvD~~~~   85 (203)
T cd04105          70 ---KNSAKGIVFVVDSATF   85 (203)
T ss_pred             ---hccCCEEEEEEECccc
Confidence               23 4999999999775

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.90  E-value=1.5e-08  Score=77.06  Aligned_cols=81  Identities=16%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCce---eEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T---~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      +|+++|.+|||||||++++.+... ........++   .......    ....+.+|||||.      +.....+..+  
T Consensus         2 ki~vvG~~~~GKtsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------~~~~~~~~~~--   72 (164)
T cd04101           2 RCAVVGDPAVGKTAFVQMFHSNGA-VFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ------ELYSDMVSNY--   72 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH------HHHHHHHHHH--
Confidence            789999999999999999986411 1222222222   1111111    1357899999993      2112222222  


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                         .+.+|++++|+|.++++
T Consensus        73 ---~~~~d~ii~v~d~~~~~   89 (164)
T cd04101          73 ---WESPSVFILVYDVSNKA   89 (164)
T ss_pred             ---hCCCCEEEEEEECcCHH
Confidence               35789999999998763

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.90  E-value=8.3e-09  Score=80.63  Aligned_cols=80  Identities=13%  Similarity=0.028  Sum_probs=49.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce-eEE-EEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T-~~~-~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      .+|+++|.+|+|||||++++.+.. .  ......++ .+. .....    ...+.+|||||..      .....+..   
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~-~--~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~------~~~~~~~~---   68 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGK-F--PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE------EYDRLRPL---   68 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCc-C--CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch------hHHHHHHH---
Confidence            379999999999999999999863 2  12221111 111 11111    2358899999942      11112211   


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                        ..+.+|++++|+|+++++
T Consensus        69 --~~~~ad~ii~v~d~~~~~   86 (187)
T cd04132          69 --SYPDVDVLLICYAVDNPT   86 (187)
T ss_pred             --hCCCCCEEEEEEECCCHH
Confidence              235789999999987654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=98.90  E-value=7.7e-09  Score=79.39  Aligned_cols=84  Identities=17%  Similarity=0.127  Sum_probs=48.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|+|||||++.+.+...........|.........   ....+.+|||||-      +.....+..+   
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~------~~~~~~~~~~---   74 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ------ERFRSLRTPF---   74 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh------HHHHHhHHHH---
Confidence            346899999999999999999997631111112222211111111   2346789999993      2222222222   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.+|+++++.|..++
T Consensus        75 --~~~~d~~i~v~d~~~~   90 (170)
T cd04116          75 --YRGSDCCLLTFAVDDS   90 (170)
T ss_pred             --hcCCCEEEEEEECCCH
Confidence              2456777777776654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04118 Rab24 Rab24 subfamily

Probab=98.90  E-value=1.1e-08  Score=80.42  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=49.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCce-eecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~-~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .+|+++|.+|||||||+|++++..... ...+..+.+........ +  ..+.+|||||-..      ....+..+    
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~~~~~----   70 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER------YEAMSRIY----   70 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh------hhhhhHhh----
Confidence            379999999999999999999863111 12222222222222222 2  3467999999422      11111111    


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                       .+.+|++++|+|.+++
T Consensus        71 -~~~~d~iilv~d~~~~   86 (193)
T cd04118          71 -YRGAKAAIVCYDLTDS   86 (193)
T ss_pred             -cCCCCEEEEEEECCCH
Confidence             2467889999998765

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd00876 Ras Ras family

Probab=98.89  E-value=1.4e-08  Score=76.51  Aligned_cols=79  Identities=11%  Similarity=0.032  Sum_probs=49.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|++|+|||||+|++++..   .......++.+..  ....   ...+.++|+||...      ....+..+    
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~~~~~----   67 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE------FSAMRDLY----   67 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH------HHHHHHHH----
Confidence            58999999999999999999863   3333333333221  1222   35688999999432      11122222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|...++
T Consensus        68 -~~~~~~~i~v~d~~~~~   84 (160)
T cd00876          68 -IRQGDGFILVYSITDRE   84 (160)
T ss_pred             -HhcCCEEEEEEECCCHH
Confidence             23568899999987653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04114 Rab30 Rab30 subfamily

Probab=98.89  E-value=1.7e-08  Score=77.26  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=49.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|||||||++++++.. . .....+..+.+..   ....+  ..+.++||||...      ....+..+  
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~--   76 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGL-F-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER------FRSITQSY--   76 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH------HHHHHHHH--
Confidence            4799999999999999999999752 1 1122222222221   11223  4578899999421      11222222  


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                         .+.+|.+++|+|++++
T Consensus        77 ---~~~~d~~i~v~d~~~~   92 (169)
T cd04114          77 ---YRSANALILTYDITCE   92 (169)
T ss_pred             ---hcCCCEEEEEEECcCH
Confidence               2457888888888764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.88  E-value=1.2e-08  Score=83.15  Aligned_cols=63  Identities=21%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc-CceeecCCCCceeEEEEEee------CCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~-~~~~~~~~~g~T~~~~~~~~------~~~~~lvDtPG~~~~~~  153 (192)
                      +...|+++|++++|||||+|.|++.. ..........||+.......      +..+.++||||+.++..
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~   75 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER   75 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence            45689999999999999999999972 33444455678887553322      47899999999987433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.88  E-value=1.9e-08  Score=76.10  Aligned_cols=79  Identities=13%  Similarity=0.056  Sum_probs=48.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|++|+|||||+|+++...   .+....+++.+.   ....  ....+.+|||||....      ...+...    
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~----   68 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY------AAIRDNY----   68 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC---CccccCCcchhhEEEEEEECCEEEEEEEEECCChhhh------hHHHHHH----
Confidence            79999999999999999999763   222333332221   1111  2356899999995321      1111111    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+..+.+++++|.+.++
T Consensus        69 -~~~~~~~i~v~d~~~~~   85 (164)
T cd04139          69 -HRSGEGFLLVFSITDME   85 (164)
T ss_pred             -hhcCCEEEEEEECCCHH
Confidence             23457788888876654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.87  E-value=4e-09  Score=82.48  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=58.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|..|+||||+++.|... ....+.++.|..... ....+..+.++|.+|-.      ..+..|..+.     
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~~~-i~~~~~~~~~~d~gG~~------~~~~~w~~y~-----   79 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNIEE-IKYKGYSLTIWDLGGQE------SFRPLWKSYF-----   79 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEEEE-EEETTEEEEEEEESSSG------GGGGGGGGGH-----
T ss_pred             cEEEEEEECCCccchHHHHHHhhhc-cccccCcccccccce-eeeCcEEEEEEeccccc------cccccceeec-----
Confidence            4569999999999999999999976 344444544544332 22257889999999832      2223454443     


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      ++++++++|+|+++++
T Consensus        80 ~~~~~iIfVvDssd~~   95 (175)
T PF00025_consen   80 QNADGIIFVVDSSDPE   95 (175)
T ss_dssp             TTESEEEEEEETTGGG
T ss_pred             cccceeEEEEecccce
Confidence            4689999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04177 RSR1 RSR1 subgroup

Probab=98.86  E-value=9.4e-09  Score=79.04  Aligned_cols=82  Identities=12%  Similarity=0.017  Sum_probs=46.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce--eEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T--~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|+|||||++++.+........+..+..  +..........+.+|||||...-      ...+..+     .
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~-----~   70 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF------TAMRELY-----I   70 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccc------hhhhHHH-----H
Confidence            479999999999999999999763211111211111  11111112357899999995321      1111111     1


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                      +.++.+++|+|.+++
T Consensus        71 ~~~~~~vlv~~~~~~   85 (168)
T cd04177          71 KSGQGFLLVYSVTSE   85 (168)
T ss_pred             hhCCEEEEEEECCCH
Confidence            235667777776554

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04176 Rap2 Rap2 subgroup

Probab=98.86  E-value=1.3e-08  Score=77.42  Aligned_cols=80  Identities=10%  Similarity=0.034  Sum_probs=47.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe-e--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~-~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|+|||||++.+.... ..  .....++.+.  .... .  ...+.+|||||...-      ...+..+   
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~---   69 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGT-FI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF------ASMRDLY---   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-CC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccc------cchHHHH---
Confidence            479999999999999999999763 21  1112221111  1111 1  235788999995321      1122222   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+++|++++|.|+++++
T Consensus        70 --~~~ad~~i~v~d~~~~~   86 (163)
T cd04176          70 --IKNGQGFIVVYSLVNQQ   86 (163)
T ss_pred             --HhhCCEEEEEEECCCHH
Confidence              23578888888887754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.86  E-value=1.5e-08  Score=80.44  Aligned_cols=78  Identities=12%  Similarity=0.069  Sum_probs=48.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|.+|||||||++++++.. ..  .....++.+   ..+...+  ..+.++||||....      ...+..     
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~------~~~~~~-----   66 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDT-FE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF------PAMRKL-----   66 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC-CC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh------hHHHHH-----
Confidence            58999999999999999999863 21  222222211   1121123  57889999995321      111111     


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ....+|++++|+|++++
T Consensus        67 ~~~~ad~vilv~d~~~~   83 (198)
T cd04147          67 SIQNSDAFALVYAVDDP   83 (198)
T ss_pred             HhhcCCEEEEEEECCCH
Confidence            23567999999998875

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.85  E-value=7e-09  Score=91.84  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=57.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCce----------------e-------ec------CCCCceeEEEEEe---eCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----------------R-------TS------DKPGLTQTINFFK---LGT  138 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~----------------~-------~~------~~~g~T~~~~~~~---~~~  138 (192)
                      ...+|+++|++|+|||||+|+|+......                .       +.      ...|+|++.....   .+.
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            35689999999999999999999542110                0       01      1578998876544   367


Q ss_pred             eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .+.+|||||...         .+..+  +.....+|.+++|+|++.
T Consensus        85 ~i~liDtpG~~~---------~~~~~--~~~~~~aD~~ilVvDa~~  119 (425)
T PRK12317         85 YFTIVDCPGHRD---------FVKNM--ITGASQADAAVLVVAADD  119 (425)
T ss_pred             EEEEEECCCccc---------chhhH--hhchhcCCEEEEEEEccc
Confidence            899999999532         11112  223456899999999986

>cd00157 Rho Rho (Ras homology) family

Probab=98.84  E-value=1.9e-08  Score=76.82  Aligned_cols=79  Identities=16%  Similarity=0.004  Sum_probs=48.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|+|||||+|+|++.. . .....+ +..+  ....   .....+.+|||||.....       .+..    
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-------~~~~----   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGK-F-PTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-------RLRP----   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCccccc-------ccch----
Confidence            378999999999999999999873 2 111111 1111  1111   124568999999964310       0000    


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                      ...+.+|++++++|++++
T Consensus        67 ~~~~~~~~~i~v~d~~~~   84 (171)
T cd00157          67 LSYPNTDVFLICFSVDSP   84 (171)
T ss_pred             hhcCCCCEEEEEEECCCH
Confidence            112567899999998764

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.84  E-value=1.1e-08  Score=81.82  Aligned_cols=81  Identities=16%  Similarity=0.231  Sum_probs=54.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccC----ce----------eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWG----VV----------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKE  155 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~----~~----------~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~  155 (192)
                      .+|+++|+.|+|||||+++|++...    ..          ......|.|.+.....   .+..+.++||||+.     +
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-----~   77 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-----D   77 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----H
Confidence            5799999999999999999986410    00          0011346776654322   36789999999973     1


Q ss_pred             HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          156 EVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .....      +.....+|.+++|+|+..
T Consensus        78 ~~~~~------~~~~~~~D~~ilVvda~~  100 (195)
T cd01884          78 YIKNM------ITGAAQMDGAILVVSATD  100 (195)
T ss_pred             HHHHH------HHHhhhCCEEEEEEECCC
Confidence            11222      233456899999999865

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.84  E-value=1.8e-08  Score=77.69  Aligned_cols=82  Identities=11%  Similarity=0.046  Sum_probs=49.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|||||||+|+++.........+..+.........   ....+.+|||||.....      ..+..     ..
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~-----~~   70 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG------GLRDG-----YY   70 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc------cccHH-----Hh
Confidence            799999999999999999986521111222222222211111   23578999999953211      01111     12


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      ..+|++++|+|+++++
T Consensus        71 ~~~d~~i~v~d~~~~~   86 (166)
T cd00877          71 IGGQCAIIMFDVTSRV   86 (166)
T ss_pred             cCCCEEEEEEECCCHH
Confidence            4679999999998753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04117 Rab15 Rab15 subfamily

Probab=98.83  E-value=3.9e-08  Score=75.32  Aligned_cols=82  Identities=13%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|+|||||++.+++........+..+..........   ...+.+|||||-..      ....+..+     .
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~------~~~~~~~~-----~   70 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER------YQTITKQY-----Y   70 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh------HHhhHHHH-----h
Confidence            6899999999999999999976311111122222111112222   24678999999421      11112111     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|+++++.|.++++
T Consensus        71 ~~~~~~i~v~d~~~~~   86 (161)
T cd04117          71 RRAQGIFLVYDISSER   86 (161)
T ss_pred             cCCcEEEEEEECCCHH
Confidence            4678888888876653

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04111 Rab39 Rab39 subfamily

Probab=98.83  E-value=2.6e-08  Score=80.19  Aligned_cols=81  Identities=23%  Similarity=0.253  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEe--eC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK--LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~--~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      .+|+++|.+|||||||+|.+++.. ..... .+..+.+..  ...  .+  ..+.+|||||-.      .....+..   
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~-~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~------~~~~~~~~---   71 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGR-FAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE------RFRSITRS---   71 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-CCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcch------hHHHHHHH---
Confidence            589999999999999999999863 22221 121212211  111  12  468899999942      11112222   


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                        ..+++|++++|.|.++++
T Consensus        72 --~~~~~d~iilv~D~~~~~   89 (211)
T cd04111          72 --YYRNSVGVLLVFDITNRE   89 (211)
T ss_pred             --HhcCCcEEEEEEECCCHH
Confidence              234678889999987653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=98.83  E-value=1.8e-08  Score=77.31  Aligned_cols=83  Identities=13%  Similarity=-0.088  Sum_probs=47.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||+|++++........+..+.+.....  ......+.++||||.....      ..+..     ..
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~-----~~   70 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP------AMQRL-----SI   70 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcch------HHHHH-----Hh
Confidence            47999999999999999999986311111111121111111  1123568899999964311      11111     12


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.+.++
T Consensus        71 ~~~~~~ilv~d~~~~~   86 (165)
T cd04140          71 SKGHAFILVYSVTSKQ   86 (165)
T ss_pred             hcCCEEEEEEECCCHH
Confidence            3457777888776543

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.83  E-value=2.8e-08  Score=80.49  Aligned_cols=85  Identities=9%  Similarity=-0.001  Sum_probs=54.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|||||||+++++.........++.|++.....+.   ....+.+|||||...      ....+..+   
T Consensus        12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~---   82 (219)
T PLN03071         12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK------FGGLRDGY---   82 (219)
T ss_pred             CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh------hhhhhHHH---
Confidence            456999999999999999999876532233344445444332222   235789999999532      11122221   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.++++++|+|.++++
T Consensus        83 --~~~~~~~ilvfD~~~~~   99 (219)
T PLN03071         83 --YIHGQCAIIMFDVTARL   99 (219)
T ss_pred             --cccccEEEEEEeCCCHH
Confidence              34678889999987653

>cd04120 Rab12 Rab12 subfamily

Probab=98.83  E-value=3.5e-08  Score=79.21  Aligned_cols=81  Identities=17%  Similarity=0.201  Sum_probs=50.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCcee-ecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~-~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .|+++|.+|||||||++.+.... +.. ...+.+..-.......   ...+.+|||+|-      +.....|..+     
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq------e~~~~l~~~y-----   69 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ------ERFNSITSAY-----   69 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc------hhhHHHHHHH-----
Confidence            68999999999999999999763 211 1111121111111222   366899999994      2223334333     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|.|.++++
T Consensus        70 ~~~ad~iIlVfDvtd~~   86 (202)
T cd04120          70 YRSAKGIILVYDITKKE   86 (202)
T ss_pred             hcCCCEEEEEEECcCHH
Confidence            34789999999988764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.82  E-value=2.6e-08  Score=77.20  Aligned_cols=54  Identities=24%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc-----eeEEEEEeeCCeEEEEECCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-----TQTINFFKLGTKLCLVDLPGYG  149 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~-----T~~~~~~~~~~~~~lvDtPG~~  149 (192)
                      .+|+++|.+|+|||||++.+++.. .  ......+     +........+..+.+|||||..
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGH-F--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD   60 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC-C--ccccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence            379999999999999999999763 1  2222222     2222221123567899999953

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.82  E-value=4.2e-08  Score=76.25  Aligned_cols=83  Identities=11%  Similarity=-0.054  Sum_probs=49.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||++.+.+........+..+..........+  ..+.+|||||...      ....+..+     .
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~l~~~~-----~   71 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE------FTAMRDQY-----M   71 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh------hHHHhHHH-----h
Confidence            489999999999999999999763111111111111111111122  4688999999531      12223222     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|.|.++++
T Consensus        72 ~~~d~~ilv~d~~~~~   87 (172)
T cd04141          72 RCGEGFIICYSVTDRH   87 (172)
T ss_pred             hcCCEEEEEEECCchh
Confidence            3568888888887664

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.81  E-value=1.4e-08  Score=73.49  Aligned_cols=81  Identities=16%  Similarity=0.172  Sum_probs=49.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCce---eecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~---~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      +|+++|.+|+|||||+++|++.. ..   ......+.+........   ...+.++|++|......      .+..+   
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~---   70 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE-FPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS------QHQFF---   70 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS---------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC------TSHHH---
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC-CcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc------cccch---
Confidence            58999999999999999999874 22   12223333333222221   23488999999632111      01111   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        ...+|++++|.|++++.
T Consensus        71 --~~~~d~~ilv~D~s~~~   87 (119)
T PF08477_consen   71 --LKKADAVILVYDLSDPE   87 (119)
T ss_dssp             --HHHSCEEEEEEECCGHH
T ss_pred             --hhcCcEEEEEEcCCChH
Confidence              23479999999998765

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PLN03108 Rab family protein; Provisional

Probab=98.80  E-value=5.6e-08  Score=78.07  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..+|+++|.+|+|||||+|.+++.. .... ....+.+........   ...+.+|||||..      .....+..+   
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~-~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~------~~~~~~~~~---   75 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE------SFRSITRSY---   75 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH------HHHHHHHHH---
Confidence            3689999999999999999999863 2221 122233322222222   2468899999942      111122111   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.+|.+++|+|.+.++
T Consensus        76 --~~~ad~~vlv~D~~~~~   92 (210)
T PLN03108         76 --YRGAAGALLVYDITRRE   92 (210)
T ss_pred             --hccCCEEEEEEECCcHH
Confidence              23567888888876643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.80  E-value=2.6e-08  Score=91.59  Aligned_cols=82  Identities=17%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CC-eEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~-~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...|.|+++|.+|+|||||+++|.+. .+. ....+|.|++...+..   +. .+.+|||||...      ....+    
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~-~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~------F~~~r----  152 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKT-KVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA------FTSMR----  152 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhC-Ccc-cccCCceeecceEEEEEECCCcEEEEEECCCCcc------hhhHH----
Confidence            45689999999999999999999986 322 3345678877653332   33 899999999532      11111    


Q ss_pred             hhhccCceeEEEEEEecCC
Q 029512          166 SISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~  184 (192)
                       ......+|++++|+|+.+
T Consensus       153 -~rga~~aDiaILVVda~d  170 (587)
T TIGR00487       153 -ARGAKVTDIVVLVVAADD  170 (587)
T ss_pred             -HhhhccCCEEEEEEECCC
Confidence             123466799999999865

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04128 Spg1 Spg1p

Probab=98.80  E-value=4.6e-08  Score=76.93  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||++.+.+........++.|..........   ...+.+|||+|-.      .....+..     .
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~------~~~~~~~~-----~   69 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR------EFINMLPL-----V   69 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch------hHHHhhHH-----H
Confidence            37899999999999999999876321112222222221112222   2568999999942      11222222     2


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .++++++++|+|.++++
T Consensus        70 ~~~a~~iilv~D~t~~~   86 (182)
T cd04128          70 CNDAVAILFMFDLTRKS   86 (182)
T ss_pred             CcCCCEEEEEEECcCHH
Confidence            35789999999987764

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.79  E-value=2.9e-08  Score=75.88  Aligned_cols=80  Identities=19%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCcee--EEEEEe-eC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~--~~~~~~-~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|.+|||||||+++++...   .....+.++.  ...... .+  ..+.+|||||........     +..     
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~-----   67 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKR---FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQ-----LER-----   67 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCc---cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccch-----HHH-----
Confidence            48999999999999999998752   2222222221  111111 22  357899999976311111     111     


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|++.++
T Consensus        68 ~~~~~d~~i~v~d~~~~~   85 (165)
T cd04146          68 SIRWADGFVLVYSITDRS   85 (165)
T ss_pred             HHHhCCEEEEEEECCCHH
Confidence            123578999999987653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04126 Rab20 Rab20 subfamily

Probab=98.78  E-value=3.5e-08  Score=80.28  Aligned_cols=80  Identities=14%  Similarity=0.032  Sum_probs=50.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|.+|||||||++.+++.. +....+..+..... .......+.+|||||....      ...+..+     .+.+
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~~-f~~~~~Tig~~~~~-~~~~~~~l~iwDt~G~e~~------~~l~~~~-----~~~a   68 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMERR-FKDTVSTVGGAFYL-KQWGPYNISIWDTAGREQF------HGLGSMY-----CRGA   68 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC-CCCCCCccceEEEE-EEeeEEEEEEEeCCCcccc------hhhHHHH-----hccC
Confidence            78999999999999999999873 32222221211111 1112456899999995321      1122222     3568


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      +++++|+|.++++
T Consensus        69 d~~IlV~Dvt~~~   81 (220)
T cd04126          69 AAVILTYDVSNVQ   81 (220)
T ss_pred             CEEEEEEECCCHH
Confidence            9999999988753

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.78  E-value=3.1e-08  Score=77.24  Aligned_cols=80  Identities=15%  Similarity=0.030  Sum_probs=49.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE-E--EEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~-~--~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||++.+.... +  ......++.+ .  .....+  ..+.+|||||-...      ...+..    
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~-f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~----   68 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNK-F--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY------DRLRPL----   68 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-C--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccch------hhhhhh----
Confidence            479999999999999999999763 2  2222222211 1  111112  56889999995321      111111    


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                       ..+++|++++|.|.++++
T Consensus        69 -~~~~a~~~ilv~d~~~~~   86 (175)
T cd01874          69 -SYPQTDVFLVCFSVVSPS   86 (175)
T ss_pred             -hcccCCEEEEEEECCCHH
Confidence             234678889999887654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.77  E-value=2e-08  Score=77.27  Aligned_cols=77  Identities=14%  Similarity=0.002  Sum_probs=45.6

Q ss_pred             EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE-E-EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I-NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~-~-~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      |+++|.+|||||||++++.+.. .  ......++.+ . .....   ...+.+|||||-...      ...+..     .
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~-----~   66 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNA-F--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY------DRLRPL-----S   66 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCC-C--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc------chhchh-----h
Confidence            5899999999999999999863 2  1111111111 1 11111   235899999995321      011111     2


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      .+.+|++++|.|.+++
T Consensus        67 ~~~~d~~ilv~d~~~~   82 (174)
T smart00174       67 YPDTDVFLICFSVDSP   82 (174)
T ss_pred             cCCCCEEEEEEECCCH
Confidence            3467888888888765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.77  E-value=3.7e-08  Score=92.44  Aligned_cols=82  Identities=18%  Similarity=0.308  Sum_probs=56.3

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-------eCCeEEEEECCCCCCCCChHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE  162 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-------~~~~~~lvDtPG~~~~~~~~~~~~~~~  162 (192)
                      ...+.|+++|++|+|||||+++|++..  ...+..+|.|++...+.       .+..+.+|||||..      .....+.
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe------~F~~mr~  313 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE------AFSSMRS  313 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhcc--CccccCCccccccceEEEEEEecCCceEEEEEECCcHH------HHHHHHH
Confidence            456899999999999999999999863  22233456666543222       24789999999952      2222222


Q ss_pred             HHHhhhccCceeEEEEEEecCC
Q 029512          163 ELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       163 ~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                           .....+|++++|+|+.+
T Consensus       314 -----rg~~~aDiaILVVDA~d  330 (742)
T CHL00189        314 -----RGANVTDIAILIIAADD  330 (742)
T ss_pred             -----HHHHHCCEEEEEEECcC
Confidence                 22346799999999865

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.75  E-value=5.1e-08  Score=75.94  Aligned_cols=83  Identities=12%  Similarity=-0.090  Sum_probs=48.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce--eEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T--~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||+.++..........+..+..  ...........+.+|||||-..      ....+..     ..
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~-----~~   70 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED------YDRLRPL-----SY   70 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh------hhhhhhh-----hc
Confidence            479999999999999999998752111111111111  1111111135688999999421      1111211     23


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.++++
T Consensus        71 ~~~d~~ilv~d~~~~~   86 (174)
T cd01871          71 PQTDVFLICFSLVSPA   86 (174)
T ss_pred             CCCCEEEEEEECCCHH
Confidence            4678999999987764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.75  E-value=3.2e-08  Score=93.47  Aligned_cols=82  Identities=22%  Similarity=0.336  Sum_probs=58.7

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ...|.|+++|.+|+|||||+++|.+.. + ..+...|.|++...+.   .+..+.||||||...-      ...+     
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F------~~m~-----  354 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-V-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF------TAMR-----  354 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCC-c-cccccCceeeeccEEEEEECCEEEEEEECCCCccc------hhHH-----
Confidence            467899999999999999999999863 2 2344567787765433   2678999999996421      1122     


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                      ......+|++++|+|+.+
T Consensus       355 ~rga~~aDiaILVVdAdd  372 (787)
T PRK05306        355 ARGAQVTDIVVLVVAADD  372 (787)
T ss_pred             HhhhhhCCEEEEEEECCC
Confidence            122456799999999875

>CHL00071 tufA elongation factor Tu

Probab=98.75  E-value=5.8e-08  Score=85.72  Aligned_cols=83  Identities=17%  Similarity=0.186  Sum_probs=55.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc--------------eeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~--------------~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~  153 (192)
                      ...+|+++|.+|+|||||+|+|++....              .......|.|.+.....   .+..+.++||||..    
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~----   86 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA----   86 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence            3468999999999999999999975210              01112257777754222   35679999999953    


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       +.....+      .....+|.+++|+|+..
T Consensus        87 -~~~~~~~------~~~~~~D~~ilVvda~~  110 (409)
T CHL00071         87 -DYVKNMI------TGAAQMDGAILVVSAAD  110 (409)
T ss_pred             -HHHHHHH------HHHHhCCEEEEEEECCC
Confidence             2222222      23346799999999864

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.75  E-value=1.3e-08  Score=83.79  Aligned_cols=90  Identities=20%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCC-CCChHH-HHHHHHH
Q 029512           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGF-AYAKEE-VKDAWEE  163 (192)
Q Consensus        89 ~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~-~~~~~~-~~~~~~~  163 (192)
                      +.+..+|+++|.|.||||||+..|++-+  .....+.++|-.+.   ..+.|..++++|.||+.. +....+ -++.   
T Consensus        59 KsGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQv---  133 (364)
T KOG1486|consen   59 KSGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQV---  133 (364)
T ss_pred             ccCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceE---
Confidence            3566799999999999999999999874  56677778887764   334588999999999876 222211 2222   


Q ss_pred             HHhhhccCceeEEEEEEecCCce
Q 029512          164 LVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       164 ~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                         +..++.+|+++.|.|++..+
T Consensus       134 ---iavArtaDlilMvLDatk~e  153 (364)
T KOG1486|consen  134 ---IAVARTADLILMVLDATKSE  153 (364)
T ss_pred             ---EEEeecccEEEEEecCCcch
Confidence               56678899999999998654

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=4.1e-09  Score=87.79  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCce--eecCCCC-----ceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPG-----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~--~~~~~~g-----~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      .+.|+.||.+|.||||||++|++-..-.  .....|+     .|.+.+......++.++||.|||+....+...+.+-++
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            4689999999999999999999863111  1122333     34445555566789999999999976666555555555


Q ss_pred             Hh------hhccCceeEEEEEEecCCceEEEE
Q 029512          165 VS------ISYRNFWSCTCFLIYIFYTNVIIL  190 (192)
Q Consensus       165 ~~------l~~~~~~~~v~~vvD~s~~~~~~~  190 (192)
                      ++      |.+.-.+.+.++-.+.+.-++|++
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLY  153 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLY  153 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence            44      333334455555566677777743

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.74  E-value=6.9e-08  Score=80.86  Aligned_cols=80  Identities=13%  Similarity=0.109  Sum_probs=51.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccC----ceeec------------CCCCceeEEE---EEeeCCeEEEEECCCCCCCCCh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK  154 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~----~~~~~------------~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~  154 (192)
                      +|+++|++|+|||||+|+|+...+    ...+.            ...|+|.+..   +.+.+..+.++||||..+    
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d----   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD----   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence            489999999999999999975321    11111            1235665543   334578899999999643    


Q ss_pred             HHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          155 EEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       .... +     ....+.+|.+++|+|+..
T Consensus        77 -f~~~-~-----~~~l~~aD~ailVVDa~~   99 (270)
T cd01886          77 -FTIE-V-----ERSLRVLDGAVAVFDAVA   99 (270)
T ss_pred             -HHHH-H-----HHHHHHcCEEEEEEECCC
Confidence             1111 1     122345689999999865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.74  E-value=5.8e-08  Score=74.93  Aligned_cols=82  Identities=16%  Similarity=0.202  Sum_probs=63.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|.++|..|+||||+++++.+. ....+++..|..... ....+..+.++|.-|      +..+++.|..+.+     
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Ikt-l~~~~~~L~iwDvGG------q~~lr~~W~nYfe-----   82 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKT-LEYKGYTLNIWDVGG------QKTLRSYWKNYFE-----   82 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeEE-EEecceEEEEEEcCC------cchhHHHHHHhhh-----
Confidence            569999999999999999999997 445555555544332 233588899999988      5567788988865     


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      ..|++++|+|++++.
T Consensus        83 stdglIwvvDssD~~   97 (185)
T KOG0073|consen   83 STDGLIWVVDSSDRM   97 (185)
T ss_pred             ccCeEEEEEECchHH
Confidence            679999999998864

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.74  E-value=9.2e-08  Score=76.82  Aligned_cols=82  Identities=20%  Similarity=0.174  Sum_probs=51.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------CCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------~~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      +|+++|.++||||||++.+++.........+.|++........        ...+.+|||+|-.      .....+..+ 
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e------~~~~l~~~~-   74 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE------SVKSTRAVF-   74 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch------hHHHHHHHH-
Confidence            7899999999999999999986322222223333222222111        2368999999942      222222222 


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                          .+.++++++|.|.+.++
T Consensus        75 ----yr~ad~iIlVyDvtn~~   91 (202)
T cd04102          75 ----YNQVNGIILVHDLTNRK   91 (202)
T ss_pred             ----hCcCCEEEEEEECcChH
Confidence                35689999999987764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.73  E-value=5.3e-08  Score=89.57  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-CceeEEEEEee---------------------CCeEEEEECCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------------------GTKLCLVDLPGY  148 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-g~T~~~~~~~~---------------------~~~~~lvDtPG~  148 (192)
                      +.|.|+++|.+|+|||||+|+|++..   .....+ ++|++......                     ...+.+|||||.
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~---v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~   79 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSA---VAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH   79 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc---cccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence            35799999999999999999999873   233333 35554321110                     024889999994


Q ss_pred             CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .      .....+.     ...+.+|++++|+|+++
T Consensus        80 e------~f~~l~~-----~~~~~aD~~IlVvD~~~  104 (590)
T TIGR00491        80 E------AFTNLRK-----RGGALADLAILIVDINE  104 (590)
T ss_pred             H------hHHHHHH-----HHHhhCCEEEEEEECCc
Confidence            2      1111221     12356899999999875

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.73  E-value=5.7e-08  Score=77.68  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +|+++|+.|+|||||+.+|++.
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~   23 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGV   23 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>smart00053 DYNc Dynamin, GTPase

Probab=98.73  E-value=1.1e-07  Score=78.39  Aligned_cols=26  Identities=42%  Similarity=0.667  Sum_probs=23.9

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      -..|.++++|.+|+||||++++|+|.
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~   49 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGR   49 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCC
Confidence            35789999999999999999999986

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd04148 RGK RGK subfamily

Probab=98.72  E-value=6.4e-08  Score=78.50  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=48.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCce-eecCCCC----ceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPG----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~-~~~~~~g----~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|.+|||||||++.+++.. .. ......+    .............+.+|||||..     ......+       
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~-~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-----~~~~~~~-------   68 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGE-YDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-----MWTEDSC-------   68 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC-cCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-----hHHHhHH-------
Confidence            79999999999999999997652 21 1111111    11111221234678999999964     1111111       


Q ss_pred             ccC-ceeEEEEEEecCCce
Q 029512          169 YRN-FWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~-~~~~v~~vvD~s~~~  186 (192)
                       .. .+|++++|+|++++.
T Consensus        69 -~~~~ad~iilV~d~td~~   86 (221)
T cd04148          69 -MQYQGDAFVVVYSVTDRS   86 (221)
T ss_pred             -hhcCCCEEEEEEECCCHH
Confidence             12 678999999988753

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04135 Tc10 TC10 subfamily

Probab=98.71  E-value=8.8e-08  Score=73.65  Aligned_cols=53  Identities=17%  Similarity=0.139  Sum_probs=34.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYG  149 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~  149 (192)
                      +|+++|++|+|||||++++.+.. .  ......++.+.  .....   ...+.+|||||-.
T Consensus         2 ki~i~G~~~~GKTsl~~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   59 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYANDA-F--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE   59 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC-C--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence            78999999999999999999863 2  22222222211  11112   2347799999953

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.71  E-value=2.3e-08  Score=72.90  Aligned_cols=77  Identities=19%  Similarity=0.101  Sum_probs=47.0

Q ss_pred             EEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        97 lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ++|++|+|||||+|+|.+.. .. ......+..+.  ....   .+..+.++|+||......      .+     ....+
T Consensus         1 iiG~~~~GKStl~~~l~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~-----~~~~~   67 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGE-FV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS------LR-----RLYYR   67 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCC-cC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh------HH-----HHHhc
Confidence            57999999999999999874 21 11111111111  1111   266799999999653111      11     11235


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .++.+++|+|++.+.
T Consensus        68 ~~~~~i~v~d~~~~~   82 (157)
T cd00882          68 GADGIILVYDVTDRE   82 (157)
T ss_pred             CCCEEEEEEECcCHH
Confidence            678999999998764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.70  E-value=8.4e-08  Score=88.28  Aligned_cols=79  Identities=25%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCce--eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~--~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .|+++|++|+|||||+|+|++.. ..  ......|.|.+..+..   .+..+.+|||||.      +...   ..+  +.
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~-~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh------e~f~---~~~--~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIA-ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH------EKFI---SNA--IA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc-CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH------HHHH---HHH--Hh
Confidence            68999999999999999999852 11  1123457887765433   2568899999994      2111   111  34


Q ss_pred             ccCceeEEEEEEecCC
Q 029512          169 YRNFWSCTCFLIYIFY  184 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~  184 (192)
                      ....+|.+++|+|++.
T Consensus        70 g~~~aD~aILVVDa~~   85 (581)
T TIGR00475        70 GGGGIDAALLVVDADE   85 (581)
T ss_pred             hhccCCEEEEEEECCC
Confidence            4567899999999976

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04121 Rab40 Rab40 subfamily

Probab=98.69  E-value=1.1e-07  Score=75.49  Aligned_cols=84  Identities=19%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|..|||||||++++.............+..-......   ....+.+|||||-.      .....+..+    
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~------~~~~l~~~~----   75 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG------RFCTIFRSY----   75 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH------HHHHHHHHH----
Confidence            46999999999999999999997521111111222211111111   23568899999942      222233322    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|.|.++++
T Consensus        76 -~~~ad~illVfD~t~~~   92 (189)
T cd04121          76 -SRGAQGIILVYDITNRW   92 (189)
T ss_pred             -hcCCCEEEEEEECcCHH
Confidence             35789999999998764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04169 RF3 RF3 subfamily

Probab=98.68  E-value=1.9e-07  Score=78.02  Aligned_cols=81  Identities=19%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCc----eeec----------CCC------CceeE---EEEEeeCCeEEEEECCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGV----VRTS----------DKP------GLTQT---INFFKLGTKLCLVDLPGYG  149 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~----~~~~----------~~~------g~T~~---~~~~~~~~~~~lvDtPG~~  149 (192)
                      .+|+++|++|+|||||+++|+.....    ..+.          +..      +.|..   ..+...+..+.+|||||..
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            47999999999999999999854211    1111          100      11111   1233347889999999964


Q ss_pred             CCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +     .....+..      .+.+|.+++|+|++.
T Consensus        83 d-----f~~~~~~~------l~~aD~~IlVvda~~  106 (267)
T cd04169          83 D-----FSEDTYRT------LTAVDSAVMVIDAAK  106 (267)
T ss_pred             H-----HHHHHHHH------HHHCCEEEEEEECCC
Confidence            2     11122222      235799999999865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.68  E-value=1.4e-07  Score=86.95  Aligned_cols=81  Identities=19%  Similarity=0.281  Sum_probs=52.1

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-CceeEEEEEee---------C------------CeEEEEECCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------G------------TKLCLVDLPG  147 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-g~T~~~~~~~~---------~------------~~~~lvDtPG  147 (192)
                      .+.|.|+++|++|+|||||+|+|++..   .....+ +.|++......         +            ..+.+|||||
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~---v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG   80 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTA---VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG   80 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcc---cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCC
Confidence            356799999999999999999999763   223333 34544321110         0            1378999999


Q ss_pred             CCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          148 YGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ...      ....+.     .....+|++++|+|+++
T Consensus        81 ~e~------f~~~~~-----~~~~~aD~~IlVvDa~~  106 (586)
T PRK04004         81 HEA------FTNLRK-----RGGALADIAILVVDINE  106 (586)
T ss_pred             hHH------HHHHHH-----HhHhhCCEEEEEEECCC
Confidence            532      111111     22356799999999875

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.68  E-value=1.1e-07  Score=77.99  Aligned_cols=84  Identities=14%  Similarity=0.038  Sum_probs=50.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc--eeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~--T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||++.+.+........+..+.  +...........+.||||+|-.      ........     .
T Consensus        13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e------~~~~~~~~-----~   81 (232)
T cd04174          13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSP------YYDNVRPL-----C   81 (232)
T ss_pred             eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCch------hhHHHHHH-----H
Confidence            458999999999999999999976311111111111  1111111124578999999932      11111111     2


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|.++++
T Consensus        82 ~~~ad~vIlVyDit~~~   98 (232)
T cd04174          82 YSDSDAVLLCFDISRPE   98 (232)
T ss_pred             cCCCcEEEEEEECCChH
Confidence            35788899999987664

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04131 Rnd Rnd subfamily

Probab=98.68  E-value=7.3e-08  Score=75.57  Aligned_cols=80  Identities=14%  Similarity=0.138  Sum_probs=48.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE-E-EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I-NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~-~-~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||++.+.+.. .  ......+..+ . ....   ....+.+|||||-..          +..+. -
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~-f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~----------~~~~~-~   67 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDC-Y--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY----------YDNVR-P   67 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc-C--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh----------hhhcc-h
Confidence            379999999999999999999863 1  1222111111 1 1111   235688999999421          11111 1


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      ...+.++++++|.|.++++
T Consensus        68 ~~~~~a~~~ilvfdit~~~   86 (178)
T cd04131          68 LCYPDSDAVLICFDISRPE   86 (178)
T ss_pred             hhcCCCCEEEEEEECCChh
Confidence            1245778899999987764

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01892 Miro2 Miro2 subfamily

Probab=98.68  E-value=1.4e-07  Score=73.02  Aligned_cols=82  Identities=15%  Similarity=0.082  Sum_probs=50.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCcee---EEEEEe-eC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~---~~~~~~-~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ..+|+++|.+|||||||++++++.. .. +.....++.   ...... .+  ..+.++|++|-....      ..+..  
T Consensus         4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------~~~~~--   73 (169)
T cd01892           4 VFLCFVLGAKGSGKSALLRAFLGRS-FS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI------LLNDA--   73 (169)
T ss_pred             EEEEEEECCCCCcHHHHHHHHhCCC-CC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc------ccchh--
Confidence            4689999999999999999999863 22 122222221   111111 23  457889999853211      11111  


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                         ..+.+|++++|+|+++++
T Consensus        74 ---~~~~~d~~llv~d~~~~~   91 (169)
T cd01892          74 ---ELAACDVACLVYDSSDPK   91 (169)
T ss_pred             ---hhhcCCEEEEEEeCCCHH
Confidence               124678999999987753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.67  E-value=1.1e-07  Score=74.98  Aligned_cols=84  Identities=14%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc--eeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~--T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||++.+..........++.+.  +...........+.+|||+|-.      .....+.     ..
T Consensus         5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e------~~~~~~~-----~~   73 (182)
T cd04172           5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP------YYDNVRP-----LS   73 (182)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCch------hhHhhhh-----hh
Confidence            458999999999999999999976311111111121  1111111123568999999942      1111111     12


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|.|.++++
T Consensus        74 ~~~ad~~ilvyDit~~~   90 (182)
T cd04172          74 YPDSDAVLICFDISRPE   90 (182)
T ss_pred             cCCCCEEEEEEECCCHH
Confidence            45678999999987764

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01882 BMS1 Bms1

Probab=98.67  E-value=1.3e-07  Score=77.07  Aligned_cols=79  Identities=20%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .....|+++|.+|+|||||+|+|.+...........|+. .. ....+..+.++||||..        ...      +..
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~--------~~~------l~~  100 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI--------NAM------IDI  100 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH--------HHH------HHH
Confidence            345689999999999999999999863222233333421 11 12257889999999842        111      122


Q ss_pred             cCceeEEEEEEecCC
Q 029512          170 RNFWSCTCFLIYIFY  184 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~  184 (192)
                      .+.+|.+++|+|++.
T Consensus       101 ak~aDvVllviDa~~  115 (225)
T cd01882         101 AKVADLVLLLIDASF  115 (225)
T ss_pred             HHhcCEEEEEEecCc
Confidence            356799999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK12735 elongation factor Tu; Reviewed

Probab=98.67  E-value=1.1e-07  Score=83.68  Aligned_cols=83  Identities=17%  Similarity=0.216  Sum_probs=55.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc------Cce--------eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW------GVV--------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~------~~~--------~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~  153 (192)
                      +..+|+++|.+|+|||||+|+|++..      ...        ......|.|.+.....   .+..+.++||||..    
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~----   86 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA----   86 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence            45689999999999999999999621      000        0112457777764333   35679999999952    


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       +.....      +.....+|.+++|+|+..
T Consensus        87 -~f~~~~------~~~~~~aD~~llVvda~~  110 (396)
T PRK12735         87 -DYVKNM------ITGAAQMDGAILVVSAAD  110 (396)
T ss_pred             -HHHHHH------HhhhccCCEEEEEEECCC
Confidence             212222      233457899999999865

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.66  E-value=1e-07  Score=73.39  Aligned_cols=56  Identities=14%  Similarity=0.091  Sum_probs=34.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGY  148 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~  148 (192)
                      .+|+++|++|||||||++.+.+........+..+.........  ....+.+|||||.
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~   59 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ   59 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence            4899999999999999999998631111111111111111111  1346789999995

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PLN00023 GTP-binding protein; Provisional

Probab=98.66  E-value=2.1e-07  Score=79.79  Aligned_cols=89  Identities=20%  Similarity=0.219  Sum_probs=56.8

Q ss_pred             CCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----------------CCeEEEEECCCCCC
Q 029512           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----------------GTKLCLVDLPGYGF  150 (192)
Q Consensus        87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----------------~~~~~lvDtPG~~~  150 (192)
                      .+.....+|+++|.+|||||||++.+.+.........+.|++........                ...+.||||+|-  
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq--   93 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH--   93 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC--
Confidence            34455679999999999999999999986322222333444432221111                235899999994  


Q ss_pred             CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512          151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                          +.....+..+     .+.++++++|.|.+..+
T Consensus        94 ----ErfrsL~~~y-----yr~AdgiILVyDITdr~  120 (334)
T PLN00023         94 ----ERYKDCRSLF-----YSQINGVIFVHDLSQRR  120 (334)
T ss_pred             ----hhhhhhhHHh-----ccCCCEEEEEEeCCCHH
Confidence                2222333333     35689999999987653

>cd04134 Rho3 Rho3 subfamily

Probab=98.65  E-value=9.5e-08  Score=75.26  Aligned_cols=82  Identities=18%  Similarity=0.060  Sum_probs=46.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCce--eEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T--~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      +|+++|.+|||||||++.+.+........+..+..  ...........+.+|||||-...      ...+    . ...+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~------~~l~----~-~~~~   70 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF------DRLR----S-LSYA   70 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhc------cccc----c-cccc
Confidence            78999999999999999999863111111111111  11111111356899999994210      0011    1 1134


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .++++++|.|.++++
T Consensus        71 ~a~~~ilv~dv~~~~   85 (189)
T cd04134          71 DTDVIMLCFSVDSPD   85 (189)
T ss_pred             CCCEEEEEEECCCHH
Confidence            567777777766553

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.65  E-value=7e-08  Score=84.80  Aligned_cols=61  Identities=23%  Similarity=0.338  Sum_probs=48.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc---Cce-----------eecCCCC---ceeEEEEEe-------eC----CeEE
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPG---LTQTINFFK-------LG----TKLC  141 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~---~~~-----------~~~~~~g---~T~~~~~~~-------~~----~~~~  141 (192)
                      .+...|+++|+.|+|||||||++++.-   ..+           .+++.+|   +|+++.+.+       ..    .++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            356799999999999999999999871   123           6778889   899887633       12    6899


Q ss_pred             EEECCCCCC
Q 029512          142 LVDLPGYGF  150 (192)
Q Consensus       142 lvDtPG~~~  150 (192)
                      ++||+||..
T Consensus        95 lIDcvG~~v  103 (492)
T TIGR02836        95 LVDCVGYTV  103 (492)
T ss_pred             EEECCCccc
Confidence            999999965

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.65  E-value=1.1e-07  Score=73.39  Aligned_cols=79  Identities=13%  Similarity=0.043  Sum_probs=48.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +++++|.+|+|||||++++.+..   .......++.+..  ....   ...+.+|||||....      ...+.     .
T Consensus         2 k~~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~-----~   67 (173)
T cd04130           2 KCVLVGDGAVGKTSLIVSYTTNG---YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF------DKLRP-----L   67 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh------ccccc-----c
Confidence            78999999999999999998752   2233333332211  1111   346789999996321      00111     1


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|.+++|.|.++++
T Consensus        68 ~~~~a~~~i~v~d~~~~~   85 (173)
T cd04130          68 CYPDTDVFLLCFSVVNPS   85 (173)
T ss_pred             ccCCCcEEEEEEECCCHH
Confidence            234668888888877654

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01875 RhoG RhoG subfamily

Probab=98.65  E-value=1.7e-07  Score=74.08  Aligned_cols=83  Identities=14%  Similarity=-0.059  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||++.+..........++.+.........  ....+.+|||||-.      .....+..+     .
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e------~~~~l~~~~-----~   72 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE------EYDRLRTLS-----Y   72 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCch------hhhhhhhhh-----c
Confidence            5899999999999999999997521111112222111111111  13568999999942      222222222     3


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|.|.++++
T Consensus        73 ~~a~~~ilvydit~~~   88 (191)
T cd01875          73 PQTNVFIICFSIASPS   88 (191)
T ss_pred             cCCCEEEEEEECCCHH
Confidence            5678889998887764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.65  E-value=2.2e-07  Score=77.35  Aligned_cols=81  Identities=21%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCc----eeecCC------------CCceeEE---EEEeeCCeEEEEECCCCCCCCCh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTSDK------------PGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~----~~~~~~------------~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~~  154 (192)
                      +|+++|.+|+|||||+|+|++....    ..+...            .+.|...   .+...+..+.+|||||..+    
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~----   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD----   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence            4799999999999999999864211    111100            0122221   2233467899999999642    


Q ss_pred             HHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                        ....+...     ...+|.+++|+|++..
T Consensus        77 --f~~~~~~~-----l~~aD~~i~Vvd~~~g  100 (268)
T cd04170          77 --FVGETRAA-----LRAADAALVVVSAQSG  100 (268)
T ss_pred             --HHHHHHHH-----HHHCCEEEEEEeCCCC
Confidence              11111111     2357999999998764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.65  E-value=6.3e-08  Score=79.56  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=49.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCc----eeecC------------CCCceeEE---EEEeeCCeEEEEECCCCCCCCCh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK  154 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~----~~~~~------------~~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~~  154 (192)
                      +|+++|.+|+|||||+++|+.....    ..+..            .-|.|...   .+...+.++.++||||...-   
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f---   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF---   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence            4799999999999999999875311    11111            11222222   22334778999999998531   


Q ss_pred             HHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                        .. .+..     ..+.+|.+++|+|++..
T Consensus        78 --~~-~~~~-----~l~~aD~~IlVvd~~~g  100 (237)
T cd04168          78 --IA-EVER-----SLSVLDGAILVISAVEG  100 (237)
T ss_pred             --HH-HHHH-----HHHHhCeEEEEEeCCCC
Confidence              11 1111     12356899999998753

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=98.63  E-value=2.5e-07  Score=75.42  Aligned_cols=83  Identities=13%  Similarity=0.006  Sum_probs=50.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||++.+++........++.+.........  ....+.+|||+|-.      .....+..     ..
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e------~~~~l~~~-----~~   70 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS------YYDNVRPL-----AY   70 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcH------HHHHHhHH-----hc
Confidence            3799999999999999999997631111111212111111111  23568899999942      11111111     24


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|.|.++++
T Consensus        71 ~~~d~illvfdis~~~   86 (222)
T cd04173          71 PDSDAVLICFDISRPE   86 (222)
T ss_pred             cCCCEEEEEEECCCHH
Confidence            5789999999988764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.62  E-value=2.7e-07  Score=72.70  Aligned_cols=82  Identities=24%  Similarity=0.355  Sum_probs=53.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCcee----------------ecCCCCceeE---EEEE--eeCCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------------TSDKPGLTQT---INFF--KLGTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~----------------~~~~~g~T~~---~~~~--~~~~~~~lvDtPG~~~  150 (192)
                      ..+|+++|+.++|||||+++|++......                .....+.|.+   ..+.  ..+..+.++||||.. 
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~-   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE-   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence            35899999999999999999997531100                0011233333   2344  457899999999952 


Q ss_pred             CCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                          +.....      ......+|.+++|||+..
T Consensus        82 ----~f~~~~------~~~~~~~D~ailvVda~~  105 (188)
T PF00009_consen   82 ----DFIKEM------IRGLRQADIAILVVDAND  105 (188)
T ss_dssp             ----HHHHHH------HHHHTTSSEEEEEEETTT
T ss_pred             ----ceeecc------cceecccccceeeeeccc
Confidence                222222      223456799999999874

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.62  E-value=4.3e-08  Score=77.46  Aligned_cols=80  Identities=24%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-----eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      .+.|+|+|++|+|||+|+..|........+     +..+.+...     .+..+.+||+||-..-.  ..   .+..   
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-----tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr--~~---~~~~---   69 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTV-----TSMENNIAYNVNNSKGKKLRLVDIPGHPRLR--SK---LLDE---   69 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCC--HH---HHHH---
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCee-----ccccCCceEEeecCCCCEEEEEECCCcHHHH--HH---HHHh---
Confidence            468999999999999999999986311111     112222221     35789999999964311  11   2222   


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                      +.....+.+|++|||++.
T Consensus        70 ~~~~~~~k~IIfvvDSs~   87 (181)
T PF09439_consen   70 LKYLSNAKGIIFVVDSST   87 (181)
T ss_dssp             HHHHGGEEEEEEEEETTT
T ss_pred             hhchhhCCEEEEEEeCcc
Confidence            123456899999999973

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.61  E-value=2.7e-07  Score=76.30  Aligned_cols=79  Identities=11%  Similarity=0.128  Sum_probs=48.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +|+++|.+|||||||++.+++.. ..  .....++.+.  ..+.. +  ..+.||||+|...      ....+..     
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~-f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~------~~~~~~~-----   67 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGR-FE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP------FPAMRRL-----   67 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC-CC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh------hhHHHHH-----
Confidence            68999999999999999998763 21  2222222221  12222 2  4678999999532      1111111     


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ....+|++++|.|.++++
T Consensus        68 ~~~~ad~iIlVfdv~~~~   85 (247)
T cd04143          68 SILTGDVFILVFSLDNRE   85 (247)
T ss_pred             HhccCCEEEEEEeCCCHH
Confidence            124578999999987653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.60  E-value=1.5e-07  Score=76.21  Aligned_cols=81  Identities=16%  Similarity=0.199  Sum_probs=54.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCc-----------------------------eeecCCCCceeEEEEEe---eCCeEE
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LGTKLC  141 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~-----------------------------~~~~~~~g~T~~~~~~~---~~~~~~  141 (192)
                      +|+++|.+++|||||+.+|+.....                             .......|+|++.....   .+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            4799999999999999999743210                             00011346777764333   478899


Q ss_pred             EEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          142 LVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       142 lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ++||||...     .    +..+  +.....+|++++|+|++..
T Consensus        81 liDtpG~~~-----~----~~~~--~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          81 ILDAPGHRD-----F----VPNM--ITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEECCChHH-----H----HHHH--HHHhhhCCEEEEEEECCCC
Confidence            999999521     1    1122  2334568999999999874

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK00049 elongation factor Tu; Reviewed

Probab=98.60  E-value=1.6e-07  Score=82.72  Aligned_cols=83  Identities=17%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccC-----ce---------eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~-----~~---------~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~  153 (192)
                      ...+|+++|..++|||||+++|++...     ..         ......|.|.+.....   .+..+.++||||..    
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----   86 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA----   86 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence            346899999999999999999997310     00         0111457787765433   35679999999962    


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       +.....      ......+|.+++|+|+..
T Consensus        87 -~f~~~~------~~~~~~aD~~llVVDa~~  110 (396)
T PRK00049         87 -DYVKNM------ITGAAQMDGAILVVSAAD  110 (396)
T ss_pred             -HHHHHH------HhhhccCCEEEEEEECCC
Confidence             212222      233467899999999875

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.59  E-value=4.1e-07  Score=72.64  Aligned_cols=80  Identities=20%  Similarity=0.046  Sum_probs=47.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .+|+++|.+|||||||+|++.+.. ..........+..+.....    ...+.+|||+|.      +.....+..+    
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq------~~~~~~~~~y----   74 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE-FPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ------EEYRSLRPEY----   74 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc-CcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH------HHHHHHHHHH----
Confidence            589999999999999999999874 2222221112222222222    245899999994      2233333222    


Q ss_pred             ccCceeEEEEEEecCC
Q 029512          169 YRNFWSCTCFLIYIFY  184 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~  184 (192)
                       ....++++++.|...
T Consensus        75 -~~~~~~~l~~~d~~~   89 (219)
T COG1100          75 -YRGANGILIVYDSTL   89 (219)
T ss_pred             -hcCCCEEEEEEeccc
Confidence             234566666666554

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.56  E-value=3.2e-07  Score=84.92  Aligned_cols=79  Identities=23%  Similarity=0.267  Sum_probs=55.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCcee--ecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~--~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .|+++|..++|||||+|+|+|.. ...  .....|.|.+..+..    .+..+.+|||||..     +....+      +
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~-~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----~fi~~m------~   69 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVN-ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----KFLSNM------L   69 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----HHHHHH------H
Confidence            58999999999999999999852 111  223357888775443    25678999999951     111222      3


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                      .....+|++++|+|+..
T Consensus        70 ~g~~~~D~~lLVVda~e   86 (614)
T PRK10512         70 AGVGGIDHALLVVACDD   86 (614)
T ss_pred             HHhhcCCEEEEEEECCC
Confidence            33456899999999875

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.55  E-value=5.4e-07  Score=68.36  Aligned_cols=82  Identities=16%  Similarity=0.080  Sum_probs=49.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+++|||||++.+.+........+..|.........   ....+.+||++|-..   -+.   ....+     .
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~---~~~---~~~~~-----~   69 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER---FDS---LRDIF-----Y   69 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG---GHH---HHHHH-----H
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc---ccc---ccccc-----c
Confidence            589999999999999999998631111112222222211111   245699999999421   111   11111     3


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|+++++.|..+++
T Consensus        70 ~~~~~~ii~fd~~~~~   85 (162)
T PF00071_consen   70 RNSDAIIIVFDVTDEE   85 (162)
T ss_dssp             TTESEEEEEEETTBHH
T ss_pred             cccccccccccccccc
Confidence            4678889988887654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PLN03127 Elongation factor Tu; Provisional

Probab=98.54  E-value=6e-07  Score=80.25  Aligned_cols=83  Identities=16%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc-----Cce---------eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~-----~~~---------~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~  153 (192)
                      ...+|+++|+.++|||||+++|++..     ...         ......|.|.+.....   .+.++.++||||...   
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~---  136 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD---  136 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence            35689999999999999999998421     000         0112367888865433   356899999999742   


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                        .+.+++.      ....+|.+++|+|+..
T Consensus       137 --f~~~~~~------g~~~aD~allVVda~~  159 (447)
T PLN03127        137 --YVKNMIT------GAAQMDGGILVVSAPD  159 (447)
T ss_pred             --hHHHHHH------HHhhCCEEEEEEECCC
Confidence              2222221      2234899999999864

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.54  E-value=7.4e-07  Score=71.51  Aligned_cols=83  Identities=11%  Similarity=-0.001  Sum_probs=47.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|||||||++.+..........++.+.......+.   ....+.+|||||-..      ....+..+   
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~------~~~~~~~~---   78 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK------FGGLRDGY---   78 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh------hhhhhHHH---
Confidence            456999999999999999975543311122223333333222221   246789999999421      11112111   


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                        ....+.++++.|.+.
T Consensus        79 --~~~~~~~i~v~d~~~   93 (215)
T PTZ00132         79 --YIKGQCAIIMFDVTS   93 (215)
T ss_pred             --hccCCEEEEEEECcC
Confidence              234577888888764

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.53  E-value=4.7e-07  Score=80.27  Aligned_cols=84  Identities=19%  Similarity=0.304  Sum_probs=56.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCcee-----------------------------ecCCCCceeEEEEEe---eCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------------TSDKPGLTQTINFFK---LGT  138 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~-----------------------------~~~~~g~T~~~~~~~---~~~  138 (192)
                      ...+|+++|..++|||||+++|+.......                             .....|+|.+.....   .+.
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~   85 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY   85 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence            456899999999999999999985321000                             011336777765433   367


Q ss_pred             eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .+.+|||||..     +    .+..+  +.....+|++++|+|+++.
T Consensus        86 ~i~iiDtpGh~-----~----f~~~~--~~~~~~aD~~ilVvDa~~~  121 (426)
T TIGR00483        86 EVTIVDCPGHR-----D----FIKNM--ITGASQADAAVLVVAVGDG  121 (426)
T ss_pred             EEEEEECCCHH-----H----HHHHH--HhhhhhCCEEEEEEECCCC
Confidence            89999999942     1    12222  2334678999999999876

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.53  E-value=2.5e-07  Score=86.78  Aligned_cols=83  Identities=16%  Similarity=0.155  Sum_probs=55.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc----eeecC------------CCCceeEEE---EEeeCCeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~----~~~~~------------~~g~T~~~~---~~~~~~~~~lvDtPG~~~~  151 (192)
                      ...+|+++|++|+|||||+|+|+.....    ..+.+            ..|+|.+..   +.+.+..+.++||||..+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            4569999999999999999999753211    11111            245666543   3345789999999998641


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .     ....      ...+.+|++++|+|+..
T Consensus        89 ~-----~~~~------~~l~~~D~~ilVvda~~  110 (689)
T TIGR00484        89 T-----VEVE------RSLRVLDGAVAVLDAVG  110 (689)
T ss_pred             h-----HHHH------HHHHHhCEEEEEEeCCC
Confidence            1     1111      11234699999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04167 Snu114p Snu114p subfamily

Probab=98.52  E-value=1.6e-07  Score=75.58  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=48.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceee--c---------------CCCCceeEEE---EEe-----eCCeEEEEECCCC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--S---------------DKPGLTQTIN---FFK-----LGTKLCLVDLPGY  148 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~--~---------------~~~g~T~~~~---~~~-----~~~~~~lvDtPG~  148 (192)
                      +|+++|.+|+|||||+++|+........  .               ...|.|.+..   +..     ....+.++||||.
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999975321100  0               0112232211   111     1357899999997


Q ss_pred             CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..-.      ...     ......+|++++|+|++..
T Consensus        82 ~~f~------~~~-----~~~~~~aD~~llVvD~~~~  107 (213)
T cd04167          82 VNFM------DEV-----AAALRLSDGVVLVVDVVEG  107 (213)
T ss_pred             cchH------HHH-----HHHHHhCCEEEEEEECCCC
Confidence            5310      111     1223457999999998654

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.52  E-value=1.7e-07  Score=86.99  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceee----------cCCC----------------------CceeEEEEE---e
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----------SDKP----------------------GLTQTINFF---K  135 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~----------~~~~----------------------g~T~~~~~~---~  135 (192)
                      ...+|+++|.+|+|||||+|+|+.... ..+          +...                      |.|.+..+.   .
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            345899999999999999999997532 111          1122                      344444322   2


Q ss_pred             eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       136 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .+.++.++||||..     +.....      ......+|++++|+|+..
T Consensus       102 ~~~~~~liDtPG~~-----~f~~~~------~~~~~~aD~~llVvda~~  139 (632)
T PRK05506        102 PKRKFIVADTPGHE-----QYTRNM------VTGASTADLAIILVDARK  139 (632)
T ss_pred             CCceEEEEECCChH-----HHHHHH------HHHHHhCCEEEEEEECCC
Confidence            36689999999942     111111      223456899999999853

>PRK12736 elongation factor Tu; Reviewed

Probab=98.50  E-value=5e-07  Score=79.45  Aligned_cols=83  Identities=18%  Similarity=0.226  Sum_probs=55.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc-----ee---------ecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----VR---------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-----~~---------~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~  153 (192)
                      ...+|+++|+.++|||||+++|++....     ..         .....|.|.+.....   .+..+.++||||..    
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~----   86 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA----   86 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence            4568999999999999999999974210     00         011457787765333   35689999999942    


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       +.+...      +.....+|.+++|+|+..
T Consensus        87 -~f~~~~------~~~~~~~d~~llVvd~~~  110 (394)
T PRK12736         87 -DYVKNM------ITGAAQMDGAILVVAATD  110 (394)
T ss_pred             -HHHHHH------HHHHhhCCEEEEEEECCC
Confidence             222222      333456899999999875

>PRK01889 GTPase RsgA; Reviewed

Probab=98.50  E-value=1.2e-07  Score=82.46  Aligned_cols=74  Identities=26%  Similarity=0.298  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecC-------CCCceeEEEEEeeCCeEEEEECCCCCC---CCChHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF---AYAKEEVKDAW  161 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-------~~g~T~~~~~~~~~~~~~lvDtPG~~~---~~~~~~~~~~~  161 (192)
                      ...++++|.+|+|||||+|.|++... ..++.       ...+|+..+.........++||||+..   ....+.+...|
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~~~~~~l~~~f  273 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWDAEDGVEETF  273 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhcccCchhhHHHhH
Confidence            45899999999999999999998632 21211       123555555656555567899999843   22334455556


Q ss_pred             HHHHh
Q 029512          162 EELVS  166 (192)
Q Consensus       162 ~~~~~  166 (192)
                      .++..
T Consensus       274 ~~~~~  278 (356)
T PRK01889        274 SDIEE  278 (356)
T ss_pred             HHHHH
Confidence            66544

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.49  E-value=6.9e-07  Score=78.50  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc-----Cce---------eecCCCCceeEEEEEee---CCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~-----~~~---------~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~  153 (192)
                      ...+|+++|..++|||||+++|++..     ...         ......|.|.+......   +..+.++||||...   
T Consensus        11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~---   87 (394)
T TIGR00485        11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD---   87 (394)
T ss_pred             ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence            35689999999999999999998531     000         00123577877654332   56799999999531   


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                        ..    ..+  +.....+|.+++|+|+..
T Consensus        88 --f~----~~~--~~~~~~~D~~ilVvda~~  110 (394)
T TIGR00485        88 --YV----KNM--ITGAAQMDGAILVVSATD  110 (394)
T ss_pred             --HH----HHH--HHHHhhCCEEEEEEECCC
Confidence              11    222  333457899999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04133 Rop_like Rop subfamily

Probab=98.47  E-value=1.1e-06  Score=69.03  Aligned_cols=83  Identities=16%  Similarity=-0.021  Sum_probs=49.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+++++|.+|||||||+..+..........++.+.+.......  ....+.+|||+|-..          +..+.. ...
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~-~~~   70 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRP-LSY   70 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccch-hhc
Confidence            4799999999999999999997631111122222222111111  235789999999432          111111 123


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.++++
T Consensus        71 ~~a~~~ilvyd~~~~~   86 (176)
T cd04133          71 RGADVFVLAFSLISRA   86 (176)
T ss_pred             CCCcEEEEEEEcCCHH
Confidence            5678888888876654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK00007 elongation factor G; Reviewed

Probab=98.47  E-value=8.5e-07  Score=83.23  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccC----ceeec------------CCCCceeEEE---EEeeCCeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------------~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~  151 (192)
                      ...+|+++|++|+|||||+|+|+....    ...++            ...|+|.+..   +.+.+..+.++||||..+ 
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~-   87 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD-   87 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence            456999999999999999999974221    11122            2446676543   334588999999999642 


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s  183 (192)
                          ...+.      ......+|++++|+|+.
T Consensus        88 ----f~~ev------~~al~~~D~~vlVvda~  109 (693)
T PRK00007         88 ----FTIEV------ERSLRVLDGAVAVFDAV  109 (693)
T ss_pred             ----HHHHH------HHHHHHcCEEEEEEECC
Confidence                11122      12234568999999985

>PRK12739 elongation factor G; Reviewed

Probab=98.47  E-value=7.9e-07  Score=83.42  Aligned_cols=83  Identities=16%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccC----ceeecC------------CCCceeEEE---EEeeCCeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTSD------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~----~~~~~~------------~~g~T~~~~---~~~~~~~~~lvDtPG~~~~  151 (192)
                      ...+|+++|..|+|||||+|+|+....    ...+.+            ..|+|.+..   +.+.+..+.++||||..+ 
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~-   85 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD-   85 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence            456899999999999999999985321    111221            345666543   334588999999999632 


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                          ...+.      ....+.+|++++|+|+..
T Consensus        86 ----f~~e~------~~al~~~D~~ilVvDa~~  108 (691)
T PRK12739         86 ----FTIEV------ERSLRVLDGAVAVFDAVS  108 (691)
T ss_pred             ----HHHHH------HHHHHHhCeEEEEEeCCC
Confidence                11122      222345699999999864

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.43  E-value=1.4e-06  Score=80.37  Aligned_cols=82  Identities=18%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCc-------eeecC------CCCceeEEEEEee-----C---CeEEEEECCCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGV-------VRTSD------KPGLTQTINFFKL-----G---TKLCLVDLPGYGFA  151 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~-------~~~~~------~~g~T~~~~~~~~-----~---~~~~lvDtPG~~~~  151 (192)
                      .+++++|..++|||||+++|+.....       ....+      ..|.|........     +   ..+.||||||..+ 
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d-   82 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-   82 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-
Confidence            48999999999999999999875210       01111      1256655432211     2   5789999999753 


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                           ....+...     .+.+|++++|+|++..
T Consensus        83 -----F~~~v~~~-----l~~aD~aILVvDat~g  106 (595)
T TIGR01393        83 -----FSYEVSRS-----LAACEGALLLVDAAQG  106 (595)
T ss_pred             -----HHHHHHHH-----HHhCCEEEEEecCCCC
Confidence                 11122222     2357999999999763

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=98.43  E-value=1.6e-06  Score=66.54  Aligned_cols=75  Identities=16%  Similarity=0.188  Sum_probs=43.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCC-ceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|||||||++.+..........+..+ .+..  ....+  ..+.+|||+|-..    .       .+     .
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~--i~~~~~~~~l~i~D~~g~~~----~-------~~-----~   63 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKE--VLVDGQSHLLLIRDEGGAPD----A-------QF-----A   63 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEE--EEECCEEEEEEEEECCCCCc----h-------hH-----H
Confidence            689999999999999998776421111111111 1111  11123  4588999999632    0       01     1


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|.|.++++
T Consensus        64 ~~~~~~ilv~d~~~~~   79 (158)
T cd04103          64 SWVDAVIFVFSLENEA   79 (158)
T ss_pred             hcCCEEEEEEECCCHH
Confidence            3457777777766553

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03126 Elongation factor Tu; Provisional

Probab=98.42  E-value=1.8e-06  Score=77.84  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc--------------eeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~--------------~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~  153 (192)
                      +..+++++|.+++|||||+++|++....              .......|.|.+....   ..+..+.++||||..    
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~----  155 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA----  155 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH----
Confidence            4568999999999999999999963210              0112234667665432   247789999999953    


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       +.+.+.      +.....+|.+++|+|+..
T Consensus       156 -~f~~~~------~~g~~~aD~ailVVda~~  179 (478)
T PLN03126        156 -DYVKNM------ITGAAQMDGAILVVSGAD  179 (478)
T ss_pred             -HHHHHH------HHHHhhCCEEEEEEECCC
Confidence             222222      222345799999999864

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.40  E-value=1.3e-06  Score=70.00  Aligned_cols=78  Identities=10%  Similarity=0.058  Sum_probs=46.6

Q ss_pred             EecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCcee
Q 029512           98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWS  174 (192)
Q Consensus        98 vG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~  174 (192)
                      +|.+|||||||+++++..........+.|.+.....+.   ....+.+|||||-.      .....+..+     .+.++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e------~~~~l~~~~-----~~~ad   69 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE------KFGGLRDGY-----YIQGQ   69 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch------hhhhhhHHH-----hcCCC
Confidence            59999999999999996521111222223332222222   24679999999942      122222222     34678


Q ss_pred             EEEEEEecCCce
Q 029512          175 CTCFLIYIFYTN  186 (192)
Q Consensus       175 ~v~~vvD~s~~~  186 (192)
                      ++++|.|++.++
T Consensus        70 ~~ilV~D~t~~~   81 (200)
T smart00176       70 CAIIMFDVTARV   81 (200)
T ss_pred             EEEEEEECCChH
Confidence            889999987654

Ran is involved in the active transport of proteins through nuclear pores.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.40  E-value=7.7e-07  Score=78.58  Aligned_cols=83  Identities=22%  Similarity=0.331  Sum_probs=50.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCc-eeecCCCCceeEEEEE-----------------------e------eCCeEE
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFF-----------------------K------LGTKLC  141 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~-~~~~~~~g~T~~~~~~-----------------------~------~~~~~~  141 (192)
                      ..+|+++|..++|||||+++|++.... .......|.|.+..+.                       .      .+..+.
T Consensus         4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   83 (406)
T TIGR03680         4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS   83 (406)
T ss_pred             eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence            458999999999999999999874200 0000111333322110                       0      135799


Q ss_pred             EEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          142 LVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       142 lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ++||||.      +.....   +  +.....+|.+++|+|++..
T Consensus        84 liDtPGh------~~f~~~---~--~~g~~~aD~aIlVVDa~~g  116 (406)
T TIGR03680        84 FVDAPGH------ETLMAT---M--LSGAALMDGALLVIAANEP  116 (406)
T ss_pred             EEECCCH------HHHHHH---H--HHHHHHCCEEEEEEECCCC
Confidence            9999994      222222   2  2234467999999999863

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.40  E-value=9.3e-07  Score=72.06  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=48.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCC---------------CCceeEE---EEEee----------CCeEEEEEC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTI---NFFKL----------GTKLCLVDL  145 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~---------------~g~T~~~---~~~~~----------~~~~~lvDt  145 (192)
                      +|+++|..++|||||+++|+...+. .....               -|.|.+.   ...+.          +..+.+|||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGI-ISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCC-CccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            6899999999999999999865321 01111               1223221   11112          567899999


Q ss_pred             CCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          146 PGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       146 PG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ||...-     .....      ...+.+|++++|+|+..
T Consensus        81 PG~~~f-----~~~~~------~~l~~aD~~ilVvD~~~  108 (222)
T cd01885          81 PGHVDF-----SSEVT------AALRLCDGALVVVDAVE  108 (222)
T ss_pred             CCcccc-----HHHHH------HHHHhcCeeEEEEECCC
Confidence            997531     11111      12245799999999865

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=1.6e-06  Score=68.83  Aligned_cols=83  Identities=23%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+|+|.+|||||.|+-...+..-......+.|+--...   ..-...++.+|||+|-      +..+..+     ..
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ------ERFrtit-----~s   77 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ------ERFRTIT-----SS   77 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc------HHHhhhh-----Hh
Confidence            46999999999999999999987632222223333221111   1112457999999993      3333222     24


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ..+++++|++|.|.+..
T Consensus        78 yYR~ahGii~vyDiT~~   94 (205)
T KOG0084|consen   78 YYRGAHGIIFVYDITKQ   94 (205)
T ss_pred             hccCCCeEEEEEEcccH
Confidence            46789999999998764

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.39  E-value=2.9e-06  Score=76.41  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=53.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCcee-------------ecC------------------CCCceeEEEEEe---e
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TSD------------------KPGLTQTINFFK---L  136 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~-------------~~~------------------~~g~T~~~~~~~---~  136 (192)
                      ...+|+++|..++|||||+++|+.......             .+.                  .-|.|.+..+..   .
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~  105 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE  105 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence            457999999999999999999986531100             000                  123555554322   3


Q ss_pred             CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +..+.++||||..     +.....      ......+|++++|+|+..
T Consensus       106 ~~~i~~iDTPGh~-----~f~~~~------~~~l~~aD~allVVDa~~  142 (474)
T PRK05124        106 KRKFIIADTPGHE-----QYTRNM------ATGASTCDLAILLIDARK  142 (474)
T ss_pred             CcEEEEEECCCcH-----HHHHHH------HHHHhhCCEEEEEEECCC
Confidence            6789999999942     111222      222367899999999864

>PRK10218 GTP-binding protein; Provisional

Probab=98.38  E-value=2.5e-06  Score=78.88  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=54.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCc-ee-------------ecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCCh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VR-------------TSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAK  154 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~-~~-------------~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~  154 (192)
                      ..+|+++|..++|||||+++|+..... ..             .....|.|.....   .+.+..+.+|||||..+-   
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df---   81 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF---   81 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh---
Confidence            458999999999999999999974211 00             0112355554432   234788999999996531   


Q ss_pred             HHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          155 EEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                         ...+...     .+.+|++++|+|++.
T Consensus        82 ---~~~v~~~-----l~~aDg~ILVVDa~~  103 (607)
T PRK10218         82 ---GGEVERV-----MSMVDSVLLVVDAFD  103 (607)
T ss_pred             ---HHHHHHH-----HHhCCEEEEEEeccc
Confidence               1122222     256899999999875

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=98.38  E-value=1.5e-06  Score=65.88  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|++.|-.|+||+|++..|.+. ......+..|.......+.....+.+||.-|-      ..++-.|..+.+    
T Consensus        16 rEirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGq------r~IRpyWsNYye----   84 (185)
T KOG0074|consen   16 REIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQ------RGIRPYWSNYYE----   84 (185)
T ss_pred             ceEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCc------cccchhhhhhhh----
Confidence            4679999999999999999999997 45555666665555455555688999999883      334456766643    


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                       ++|.+++|+|+.+.
T Consensus        85 -nvd~lIyVIDS~D~   98 (185)
T KOG0074|consen   85 -NVDGLIYVIDSTDE   98 (185)
T ss_pred             -ccceEEEEEeCCch
Confidence             78999999997653

>cd04129 Rho2 Rho2 subfamily

Probab=98.37  E-value=2.5e-06  Score=66.92  Aligned_cols=55  Identities=18%  Similarity=0.099  Sum_probs=32.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGY  148 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~  148 (192)
                      +++++|.+|+|||||++.+.............+.........  ....+.++||||.
T Consensus         3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~   59 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQ   59 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCC
Confidence            799999999999999999985421111111111000111111  1245789999995

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=3.3e-07  Score=71.84  Aligned_cols=83  Identities=18%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|-.|+||||+++.|--. +...+.++.|...+...+. +..+.+||.-|-      +.++..|..+.     
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~-E~vttvPTiGfnVE~v~yk-n~~f~vWDvGGq------~k~R~lW~~Y~-----   82 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLG-EIVTTVPTIGFNVETVEYK-NISFTVWDVGGQ------EKLRPLWKHYF-----   82 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccC-CcccCCCccccceeEEEEc-ceEEEEEecCCC------cccccchhhhc-----
Confidence            3458999999999999999999876 5555667767666644443 889999999994      34455676653     


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      .+.+++++|||+++.+
T Consensus        83 ~~t~~lIfVvDS~Dr~   98 (181)
T KOG0070|consen   83 QNTQGLIFVVDSSDRE   98 (181)
T ss_pred             cCCcEEEEEEeCCcHH
Confidence            4678999999998865

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.36  E-value=1.6e-06  Score=76.51  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=51.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCcee-------------ec------------------CCCCceeEEEEEe---eCCe
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTINFFK---LGTK  139 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~-------------~~------------------~~~g~T~~~~~~~---~~~~  139 (192)
                      +|+++|+.++|||||+++|+...+...             .+                  ..-|.|.+.....   .+..
T Consensus         2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~   81 (406)
T TIGR02034         2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK   81 (406)
T ss_pred             eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence            689999999999999999975421100             00                  0124556654333   3678


Q ss_pred             EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +.++||||..     +.....      ......+|.+++|+|+..
T Consensus        82 ~~liDtPGh~-----~f~~~~------~~~~~~aD~allVVda~~  115 (406)
T TIGR02034        82 FIVADTPGHE-----QYTRNM------ATGASTADLAVLLVDARK  115 (406)
T ss_pred             EEEEeCCCHH-----HHHHHH------HHHHhhCCEEEEEEECCC
Confidence            9999999942     111122      123356899999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.35  E-value=3.1e-06  Score=78.16  Aligned_cols=81  Identities=23%  Similarity=0.268  Sum_probs=52.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCc----eeec----------CCCCceeEEE---EEeeCCeEEEEECCCCCCCCChH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGV----VRTS----------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE  155 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~----~~~~----------~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~  155 (192)
                      .+|+++|..++|||||+++|+.....    ..+.          ..-|.|....   +.+.+..+.+|||||..+     
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D-----   76 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD-----   76 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence            37999999999999999999863210    0000          1224555432   334578999999999632     


Q ss_pred             HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          156 EVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       ....+..     ..+.+|.+++|+|++.
T Consensus        77 -F~~ev~~-----~l~~aD~alLVVDa~~   99 (594)
T TIGR01394        77 -FGGEVER-----VLGMVDGVLLLVDASE   99 (594)
T ss_pred             -HHHHHHH-----HHHhCCEEEEEEeCCC
Confidence             1112211     2246799999999975

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.33  E-value=1.9e-06  Score=76.23  Aligned_cols=84  Identities=20%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccC-ceeecCCCCceeEEEEEe-----------------e------------CCeE
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK-----------------L------------GTKL  140 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~-~~~~~~~~g~T~~~~~~~-----------------~------------~~~~  140 (192)
                      +..+|+++|..++|||||+.+|++..- ........|.|.+..+..                 .            ...+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            456899999999999999999987420 001111234554432110                 0            2578


Q ss_pred             EEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          141 CLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       141 ~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .++||||..      ..   ...+  +.....+|.+++|+|++++
T Consensus        88 ~liDtPG~~------~f---~~~~--~~~~~~~D~~llVVDa~~~  121 (411)
T PRK04000         88 SFVDAPGHE------TL---MATM--LSGAALMDGAILVIAANEP  121 (411)
T ss_pred             EEEECCCHH------HH---HHHH--HHHHhhCCEEEEEEECCCC
Confidence            999999931      11   1122  4445678999999999864

>TIGR00503 prfC peptide chain release factor 3

Probab=98.30  E-value=5.6e-06  Score=75.49  Aligned_cols=82  Identities=18%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC-c---eeec----------C------CCCceeEE---EEEeeCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG-V---VRTS----------D------KPGLTQTI---NFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~-~---~~~~----------~------~~g~T~~~---~~~~~~~~~~lvDtPG~  148 (192)
                      ..+++++|.+|+|||||+++|+.... .   ..+.          +      .-|.|...   .+.+.+..+.++||||.
T Consensus        11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~   90 (527)
T TIGR00503        11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH   90 (527)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence            45999999999999999999964211 1   1111          0      01222222   23335788999999997


Q ss_pred             CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .+     .....+..+      ..+|.+++|+|++.
T Consensus        91 ~d-----f~~~~~~~l------~~aD~aIlVvDa~~  115 (527)
T TIGR00503        91 ED-----FSEDTYRTL------TAVDNCLMVIDAAK  115 (527)
T ss_pred             hh-----HHHHHHHHH------HhCCEEEEEEECCC
Confidence            32     111233222      35799999999875

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.29  E-value=6.1e-06  Score=64.87  Aligned_cols=85  Identities=26%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceee-----c-CCCC---ceeEEEEEe----eCCeEEEEECCCCCCCCChHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-----S-DKPG---LTQTINFFK----LGTKLCLVDLPGYGFAYAKEEV  157 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~-----~-~~~g---~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~  157 (192)
                      ...+|+++|+-++||+|++.++.... ...+     + ..-+   +|....+..    .+..+.|+||||      ++..
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG------q~RF   81 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG------QERF   81 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccc-cceeeccccccccccccceeEeecccceEEcCcceEEEecCCC------cHHH
Confidence            35699999999999999999999763 1111     1 1122   555554433    357899999999      3333


Q ss_pred             HHHHHHHHhhhccCceeEEEEEEecCCceE
Q 029512          158 KDAWEELVSISYRNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~  187 (192)
                      .-.|..+.     +.+++.+++||++.|..
T Consensus        82 ~fm~~~l~-----~ga~gaivlVDss~~~~  106 (187)
T COG2229          82 KFMWEILS-----RGAVGAIVLVDSSRPIT  106 (187)
T ss_pred             HHHHHHHh-----CCcceEEEEEecCCCcc
Confidence            34444442     24789999999998864

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.29  E-value=4.6e-06  Score=77.14  Aligned_cols=84  Identities=15%  Similarity=0.129  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCce-------eecC------CCCceeEEE---EEe---e--CCeEEEEECCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTSD------KPGLTQTIN---FFK---L--GTKLCLVDLPGYG  149 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~-------~~~~------~~g~T~~~~---~~~---~--~~~~~lvDtPG~~  149 (192)
                      ...+++++|..++|||||+++|+......       ...+      ..|.|....   ..+   .  +..+.||||||..
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34589999999999999999998642110       0111      124444332   111   1  4678999999975


Q ss_pred             CCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      +      ....+...     .+.+|++++|+|++..
T Consensus        86 d------F~~~v~~s-----l~~aD~aILVVDas~g  110 (600)
T PRK05433         86 D------FSYEVSRS-----LAACEGALLVVDASQG  110 (600)
T ss_pred             H------HHHHHHHH-----HHHCCEEEEEEECCCC
Confidence            3      11122222     2357999999999763

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=98.28  E-value=3.8e-06  Score=64.95  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCC-CCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..+|+++|.+|||||||+-..+... +..-.+. .|+--.......   ..++.||||+|-      +..+..-++    
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~-fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq------ErFRtLTpS----   79 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNT-FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ------ERFRTLTPS----   79 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcc-cCccCCceeeeeEEEEEEEEcCceEEEEEEeccch------HhhhccCHh----
Confidence            3699999999999999999888752 2211111 222222222222   457899999993      222222222    


Q ss_pred             hccCceeEEEEEEecCCceE
Q 029512          168 SYRNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~~  187 (192)
                       ..+.+.++|+|.|....+.
T Consensus        80 -yyRgaqGiIlVYDVT~Rdt   98 (209)
T KOG0080|consen   80 -YYRGAQGIILVYDVTSRDT   98 (209)
T ss_pred             -HhccCceeEEEEEccchhh
Confidence             2345678888888866553

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=6.4e-06  Score=65.48  Aligned_cols=83  Identities=17%  Similarity=0.138  Sum_probs=47.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE-EEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~-~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+++++|..+|||||||+..+-...-.....+.|..=.. .++..  ...++||||+|      ++..+...+.+    
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG------QERFrslipsY----   91 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG------QERFRSLIPSY----   91 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc------HHHHhhhhhhh----
Confidence            3689999999999999999998653111111222211111 12222  46789999999      33333333222    


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                       .++..++++|.|.++.
T Consensus        92 -~Rds~vaviVyDit~~  107 (221)
T KOG0094|consen   92 -IRDSSVAVIVYDITDR  107 (221)
T ss_pred             -ccCCeEEEEEEecccc
Confidence             3455556666665544

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.25  E-value=3.2e-06  Score=69.35  Aligned_cols=84  Identities=15%  Similarity=0.130  Sum_probs=47.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      +|+++|+.++||||..+.+++... +.-...-+.|.++.....    ...+.+||+||-....... .......+     
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-~~~~~~~i-----   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-FNSQREEI-----   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-HTCCHHHH-----
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-ccccHHHH-----
Confidence            589999999999999999998631 222233356665543332    4589999999975321110 00001111     


Q ss_pred             cCceeEEEEEEecCC
Q 029512          170 RNFWSCTCFLIYIFY  184 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~  184 (192)
                      -+++.++++|+|+..
T Consensus        74 f~~v~~LIyV~D~qs   88 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQS   88 (232)
T ss_dssp             HCTESEEEEEEETT-
T ss_pred             HhccCEEEEEEEccc
Confidence            146789999999973

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=98.24  E-value=3.6e-06  Score=66.29  Aligned_cols=58  Identities=24%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccC---ceeecCCCCceeEEEEEeeCCeEEEEECCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKLGTKLCLVDLPG  147 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~---~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG  147 (192)
                      ....+|++.|.+|+|||||+|.+...+.   +-.+-...+.|++...-..-..+++|||+|
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG   67 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG   67 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc
Confidence            4567999999999999999999997631   111122335788876654456789999999

>PRK13351 elongation factor G; Reviewed

Probab=98.23  E-value=5.9e-06  Score=77.52  Aligned_cols=84  Identities=14%  Similarity=0.124  Sum_probs=53.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc----eeec------C------CCCceeEE---EEEeeCCeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------D------KPGLTQTI---NFFKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~----~~~~------~------~~g~T~~~---~~~~~~~~~~lvDtPG~~~~  151 (192)
                      ...+|+++|..|+|||||+++|+...+.    ..+.      +      ..+.|...   .+.+.+..+.+|||||..+ 
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d-   85 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID-   85 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence            4569999999999999999999864210    0111      0      12333332   2333478899999999743 


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                           ....+..     ..+.+|++++|+|++..
T Consensus        86 -----f~~~~~~-----~l~~aD~~ilVvd~~~~  109 (687)
T PRK13351         86 -----FTGEVER-----SLRVLDGAVVVFDAVTG  109 (687)
T ss_pred             -----HHHHHHH-----HHHhCCEEEEEEeCCCC
Confidence                 1111211     22457999999998764

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.22  E-value=9.7e-06  Score=73.92  Aligned_cols=82  Identities=21%  Similarity=0.212  Sum_probs=50.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC----ceee----------cCC------CCceeE---EEEEeeCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG----VVRT----------SDK------PGLTQT---INFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~----~~~~----------~~~------~g~T~~---~~~~~~~~~~~lvDtPG~  148 (192)
                      ..+|+++|.+|+|||||+++|+....    ...+          ++.      -|.|..   ..+.+.+..+.++||||.
T Consensus        10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~   89 (526)
T PRK00741         10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH   89 (526)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence            45999999999999999999974211    0111          100      012221   223345788999999996


Q ss_pred             CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .+     .....+..+      +.+|.+++|+|+..
T Consensus        90 ~d-----f~~~~~~~l------~~aD~aIlVvDa~~  114 (526)
T PRK00741         90 ED-----FSEDTYRTL------TAVDSALMVIDAAK  114 (526)
T ss_pred             hh-----hHHHHHHHH------HHCCEEEEEEecCC
Confidence            42     111222222      35799999999865

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=3.8e-06  Score=67.64  Aligned_cols=78  Identities=21%  Similarity=0.281  Sum_probs=51.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .+.|.++|.+++|||+|+-.|.-...     ....++.+++  .+.. ...+.|||.||-      ..++..+.++  +.
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~-----~~TvtSiepn~a~~r~gs~~~~LVD~PGH------~rlR~kl~e~--~~  104 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSH-----RGTVTSIEPNEATYRLGSENVTLVDLPGH------SRLRRKLLEY--LK  104 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCc-----cCeeeeeccceeeEeecCcceEEEeCCCc------HHHHHHHHHH--cc
Confidence            36899999999999999998886421     0111223332  2222 445799999993      3333333232  66


Q ss_pred             ccCceeEEEEEEec
Q 029512          169 YRNFWSCTCFLIYI  182 (192)
Q Consensus       169 ~~~~~~~v~~vvD~  182 (192)
                      +...+.++++|||+
T Consensus       105 ~~~~akaiVFVVDS  118 (238)
T KOG0090|consen  105 HNYSAKAIVFVVDS  118 (238)
T ss_pred             ccccceeEEEEEec
Confidence            77889999999997

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=2.7e-06  Score=67.29  Aligned_cols=57  Identities=23%  Similarity=0.184  Sum_probs=41.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeec---CCCCceeEEEEEeeCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~---~~~g~T~~~~~~~~~~~~~lvDtPG~  148 (192)
                      ..+++|+|.+|||||||+-............   ...+.|+.........++.+|||+|-
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ   64 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ   64 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCc
Confidence            4689999999999999999888763222222   23346666555555678899999995

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.15  E-value=2e-06  Score=65.54  Aligned_cols=80  Identities=21%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+.++|--|+||||++|.++.........+    |+-.+...   ....+.++|.||-.      ..+..|..+-    
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmip----tvGfnmrk~tkgnvtiklwD~gGq~------rfrsmWeryc----   86 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIP----TVGFNMRKVTKGNVTIKLWDLGGQP------RFRSMWERYC----   86 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccchhhhcc----cccceeEEeccCceEEEEEecCCCc------cHHHHHHHHh----
Confidence            4789999999999999998886422222222    33222222   35679999999943      2345776664    


Q ss_pred             cCceeEEEEEEecCCceE
Q 029512          170 RNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~~  187 (192)
                       +.++.++++||+++|+-
T Consensus        87 -R~v~aivY~VDaad~~k  103 (186)
T KOG0075|consen   87 -RGVSAIVYVVDAADPDK  103 (186)
T ss_pred             -hcCcEEEEEeecCCccc
Confidence             46799999999999874

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.11  E-value=1.3e-05  Score=71.65  Aligned_cols=83  Identities=18%  Similarity=0.236  Sum_probs=54.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc-e---------------e-------ec------CCCCceeEEEEEe---eCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V---------------R-------TS------DKPGLTQTINFFK---LGT  138 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-~---------------~-------~~------~~~g~T~~~~~~~---~~~  138 (192)
                      ...+|+++|..++|||||+.+|+..... .               .       ..      ...|.|.+.....   .+.
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            3468999999999999999999853210 0               0       01      1235676664333   367


Q ss_pred             eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .+.|+||||..     +...+.      +.....+|.+++|||+..
T Consensus        86 ~i~lIDtPGh~-----~f~~~~------~~g~~~aD~ailVVda~~  120 (446)
T PTZ00141         86 YFTIIDAPGHR-----DFIKNM------ITGTSQADVAILVVASTA  120 (446)
T ss_pred             EEEEEECCChH-----HHHHHH------HHhhhhcCEEEEEEEcCC
Confidence            89999999942     222222      223456899999999875

>PTZ00416 elongation factor 2; Provisional

Probab=98.10  E-value=2e-05  Score=75.50  Aligned_cols=81  Identities=15%  Similarity=0.156  Sum_probs=51.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc---------------eeEE---EEEee----------CCeEEEE
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---------------TQTI---NFFKL----------GTKLCLV  143 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~---------------T~~~---~~~~~----------~~~~~lv  143 (192)
                      ..+|+++|..++|||||+++|+...+. ......|.               |.+.   ...+.          +..+.++
T Consensus        19 irni~iiGh~d~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         19 IRNMSVIAHVDHGKSTLTDSLVCKAGI-ISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             cCEEEEECCCCCCHHHHHHHHHHhcCC-cccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            459999999999999999999975321 11112222               2221   11111          4568999


Q ss_pred             ECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       144 DtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ||||..+     ...+.      ....+.+|++++|+|+..
T Consensus        98 DtPG~~~-----f~~~~------~~al~~~D~ailVvda~~  127 (836)
T PTZ00416         98 DSPGHVD-----FSSEV------TAALRVTDGALVVVDCVE  127 (836)
T ss_pred             cCCCHHh-----HHHHH------HHHHhcCCeEEEEEECCC
Confidence            9999753     11112      223356899999999865

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.07  E-value=3.2e-05  Score=63.06  Aligned_cols=21  Identities=38%  Similarity=0.684  Sum_probs=19.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      +|+++|..++|||||++.++.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~   21 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQ   21 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999995

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.06  E-value=4.6e-06  Score=69.21  Aligned_cols=86  Identities=24%  Similarity=0.253  Sum_probs=62.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCC-CCCh-HHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGF-AYAK-EEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~-~~~~-~~~~~~~~~~~~  166 (192)
                      ..++.++|.|.+||||+++.|++..  ..+..+.|+|-...   ..+.+.++.+.|.||+.. +... ..-.+.      
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv------  130 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV------  130 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEE------
Confidence            3489999999999999999999974  67777777665432   224699999999999976 2211 111122      


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                      +.-++.+.++++++|+-.|
T Consensus       131 iavartcnli~~vld~~kp  149 (358)
T KOG1487|consen  131 IAVARTCNLIFIVLDVLKP  149 (358)
T ss_pred             EEEeecccEEEEEeeccCc
Confidence            5567788999999998655

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.05  E-value=3.1e-05  Score=74.31  Aligned_cols=82  Identities=13%  Similarity=0.188  Sum_probs=50.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC---------------ceeEE---EEEe----------------e
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---------------LTQTI---NFFK----------------L  136 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g---------------~T~~~---~~~~----------------~  136 (192)
                      ...+|+++|+.++|||||+++|+...+. ......|               .|...   ...+                .
T Consensus        18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         18 NIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHhcCC-cccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            4569999999999999999999865321 1111122               22221   1111                1


Q ss_pred             CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +..+.++||||..+     ...+.      ....+.+|..++|||+..
T Consensus        97 ~~~inliDtPGh~d-----F~~e~------~~al~~~D~ailVvda~~  133 (843)
T PLN00116         97 EYLINLIDSPGHVD-----FSSEV------TAALRITDGALVVVDCIE  133 (843)
T ss_pred             ceEEEEECCCCHHH-----HHHHH------HHHHhhcCEEEEEEECCC
Confidence            45689999999632     22222      222355799999999864

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.04  E-value=6.5e-06  Score=77.66  Aligned_cols=82  Identities=16%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCc--------eeecC------CCCceeEEE-------EEeeCCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTIN-------FFKLGTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~--------~~~~~------~~g~T~~~~-------~~~~~~~~~lvDtPG~~~  150 (192)
                      ..+|+++|..++|||||+++|+...+.        ....+      ..|.|.+..       ....+..+.++||||..+
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~   98 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD   98 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence            469999999999999999999753110        00011      123443322       112367899999999864


Q ss_pred             CCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      -.  .   ....      ..+.+|++++|+|+..
T Consensus        99 f~--~---~~~~------al~~aD~~llVvda~~  121 (720)
T TIGR00490        99 FG--G---DVTR------AMRAVDGAIVVVCAVE  121 (720)
T ss_pred             cH--H---HHHH------HHHhcCEEEEEEecCC
Confidence            11  1   1111      2245799999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.02  E-value=2e-05  Score=62.79  Aligned_cols=81  Identities=12%  Similarity=-0.049  Sum_probs=45.0

Q ss_pred             CeEEEEecCCCcHHHHHH-HHhhccCc--eeecCCCCcee--E-EE------------EEeeCCeEEEEECCCCCCCCCh
Q 029512           93 PEIAFAGRSNVGKSSMLN-ALTRQWGV--VRTSDKPGLTQ--T-IN------------FFKLGTKLCLVDLPGYGFAYAK  154 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin-~L~~~~~~--~~~~~~~g~T~--~-~~------------~~~~~~~~~lvDtPG~~~~~~~  154 (192)
                      .+|+++|.+|||||||++ .+.+....  ........+.-  + ..            .......+.+|||+|-...   
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~---   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK---   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence            589999999999999996 55443100  00111111110  0 00            0011357899999995320   


Q ss_pred             HHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512          155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                        ..        -...+.+|++++|.|.++++
T Consensus        80 --~~--------~~~~~~ad~iilv~d~t~~~  101 (195)
T cd01873          80 --DR--------RFAYGRSDVVLLCFSIASPN  101 (195)
T ss_pred             --hh--------cccCCCCCEEEEEEECCChh
Confidence              00        01235678888888876654

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.01  E-value=2.9e-05  Score=76.90  Aligned_cols=119  Identities=17%  Similarity=0.214  Sum_probs=72.5

Q ss_pred             HHHHHHHHhhhhhHHHHHhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhcc-Ccee---ec--CCCCceeEEEEEe
Q 029512           62 ERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQW-GVVR---TS--DKPGLTQTINFFK  135 (192)
Q Consensus        62 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~-~~~~---~~--~~~g~T~~~~~~~  135 (192)
                      +.+.+..+ ++..+..++..+...+...-..|..+++|++|+||||+|+.. |.. ....   ..  ...+-|+.+.+..
T Consensus        82 ~~~~l~~~-~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf  159 (1169)
T TIGR03348        82 EIRELRAR-FNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF  159 (1169)
T ss_pred             HHHHHHHH-HHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe
Confidence            33344443 344444454443222222346789999999999999999977 331 1111   01  1224566666654


Q ss_pred             eCCeEEEEECCCCCCC-C-ChHHHHHHHHHHHh----hhccCceeEEEEEEecC
Q 029512          136 LGTKLCLVDLPGYGFA-Y-AKEEVKDAWEELVS----ISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       136 ~~~~~~lvDtPG~~~~-~-~~~~~~~~~~~~~~----l~~~~~~~~v~~vvD~s  183 (192)
                       ...-+++||+|.... . ..+.....|..++.    ...++.+++|+++||..
T Consensus       160 -~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~  212 (1169)
T TIGR03348       160 -TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLA  212 (1169)
T ss_pred             -cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHH
Confidence             455679999995542 2 22334567888887    34458899999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK09866 hypothetical protein; Provisional

Probab=98.00  E-value=2.7e-05  Score=72.05  Aligned_cols=56  Identities=16%  Similarity=0.157  Sum_probs=39.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGF  150 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~  150 (192)
                      +.++++|++|+|||||+|+|+|. .+..+++.+.++. +....    ........||-||..
T Consensus        70 ~~valvG~sgaGKSTLiNaL~G~-~Vlpt~~~~~t~l-pT~i~~~pg~re~~L~~dtvgfI~  129 (741)
T PRK09866         70 MVLAIVGTMKAGKSTTINAIVGT-EVLPNRNRPMTAL-PTLIRHTPGQKEPVLHFSHVAPID  129 (741)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC-ccccCCCcccccc-cEEEEecCCcCceeeecCCccchH
Confidence            79999999999999999999998 5555555555444 22222    133455667777664

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.98  E-value=9e-05  Score=65.89  Aligned_cols=88  Identities=17%  Similarity=0.164  Sum_probs=50.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc-----CceeecCCCC-----------cee-EEEEEe-------------------
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG-----------LTQ-TINFFK-------------------  135 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~~~g-----------~T~-~~~~~~-------------------  135 (192)
                      ...|+++|.+|+||||++..|....     .+..++.-++           ..+ ...++.                   
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999998311     2233322111           000 011111                   


Q ss_pred             -eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       136 -~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       .+..+.|+||||...  ..+.+.   .++..+....+.+.+++|+|+..
T Consensus       180 ~~~~DvViIDTaGr~~--~d~~lm---~El~~i~~~~~p~e~lLVlda~~  224 (429)
T TIGR01425       180 KENFDIIIVDTSGRHK--QEDSLF---EEMLQVAEAIQPDNIIFVMDGSI  224 (429)
T ss_pred             hCCCCEEEEECCCCCc--chHHHH---HHHHHHhhhcCCcEEEEEecccc
Confidence             146899999999543  223233   33333333445678999999853

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=5e-05  Score=58.18  Aligned_cols=77  Identities=22%  Similarity=0.314  Sum_probs=49.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE----e---eCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----K---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~----~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ..+|++||+.|+||+.|+...+...    ..+..|.|.-+.+.    .   +..++.+|||+|      ++..+...++ 
T Consensus         7 lfkivlvgnagvgktclvrrftqgl----fppgqgatigvdfmiktvev~gekiklqiwdtag------qerfrsitqs-   75 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGL----FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG------QERFRSITQS-   75 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccC----CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc------hHHHHHHHHH-
Confidence            4689999999999999999998752    22333444433222    1   346799999999      3332222222 


Q ss_pred             HhhhccCceeEEEEEEecC
Q 029512          165 VSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s  183 (192)
                          ..+.+..++++.|.+
T Consensus        76 ----yyrsahalilvydis   90 (213)
T KOG0095|consen   76 ----YYRSAHALILVYDIS   90 (213)
T ss_pred             ----HhhhcceEEEEEecc
Confidence                234567778888765

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=6.4e-05  Score=59.48  Aligned_cols=56  Identities=25%  Similarity=0.270  Sum_probs=37.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCC-CCceeEEEEEe---eCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFK---LGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-~g~T~~~~~~~---~~~~~~lvDtPG~  148 (192)
                      ..+++++|.+|||||.|+-..+.. .+..+.+. .|+---...+.   -..++.+|||+|-
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~k-rF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq   65 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDK-RFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ   65 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhcc-CccccccceeeeeeceeEEEEcCceEEEEEEecCCc
Confidence            468999999999999999999987 33443331 12111111222   2467999999993

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.89  E-value=2.5e-05  Score=58.07  Aligned_cols=76  Identities=21%  Similarity=0.212  Sum_probs=48.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .++++||..|+||+||+|+|.|..-      ..-.|+.+.+...    ..+||||-...  ..   .....+  +.....
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~------lykKTQAve~~d~----~~IDTPGEy~~--~~---~~Y~aL--~tt~~d   64 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDT------LYKKTQAVEFNDK----GDIDTPGEYFE--HP---RWYHAL--ITTLQD   64 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchh------hhcccceeeccCc----cccCCchhhhh--hh---HHHHHH--HHHhhc
Confidence            4899999999999999999999741      1124555544322    24999994431  11   112223  223456


Q ss_pred             eeEEEEEEecCCc
Q 029512          173 WSCTCFLIYIFYT  185 (192)
Q Consensus       173 ~~~v~~vvD~s~~  185 (192)
                      +|.+++|-.+.+|
T Consensus        65 advi~~v~~and~   77 (148)
T COG4917          65 ADVIIYVHAANDP   77 (148)
T ss_pred             cceeeeeecccCc
Confidence            7888888777666

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=6.6e-05  Score=60.17  Aligned_cols=80  Identities=19%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE----EEe---eCCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~----~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~  163 (192)
                      ...+|+++|.+|||||+++-......   ..... ..|.-+.    ...   ....+++|||.|      ++.....+.+
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~---f~~~~-~sTiGIDFk~kti~l~g~~i~lQiWDtaG------Qerf~ti~~s   80 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDS---FNTSF-ISTIGIDFKIKTIELDGKKIKLQIWDTAG------QERFRTITTA   80 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhcc---CcCCc-cceEEEEEEEEEEEeCCeEEEEEEEEccc------chhHHHHHHH
Confidence            45799999999999999999888652   11111 1222111    111   245789999999      3333334433


Q ss_pred             HHhhhccCceeEEEEEEecCCc
Q 029512          164 LVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       164 ~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      +     .+.+.++++|+|.+..
T Consensus        81 Y-----yrgA~gi~LvyDitne   97 (207)
T KOG0078|consen   81 Y-----YRGAMGILLVYDITNE   97 (207)
T ss_pred             H-----HhhcCeeEEEEEccch
Confidence            3     3457888888887653

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.85  E-value=8e-05  Score=70.46  Aligned_cols=83  Identities=16%  Similarity=0.130  Sum_probs=50.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCcee--e------cCC------CCceeEEE---EEe----eCCeEEEEECCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--T------SDK------PGLTQTIN---FFK----LGTKLCLVDLPGYG  149 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~--~------~~~------~g~T~~~~---~~~----~~~~~~lvDtPG~~  149 (192)
                      ...+|+++|+.++|||||+.+|+...+...  .      .+.      -|.|.+..   +.+    .+..+.++||||..
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            355899999999999999999986432110  0      000      12232221   111    25678999999976


Q ss_pred             CCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +-     .....      ...+.+|++++|+|+..
T Consensus        99 df-----~~~~~------~~l~~~D~avlVvda~~  122 (731)
T PRK07560         99 DF-----GGDVT------RAMRAVDGAIVVVDAVE  122 (731)
T ss_pred             Ch-----HHHHH------HHHHhcCEEEEEEECCC
Confidence            51     11111      12245799999999754

>PRK12740 elongation factor G; Reviewed

Probab=97.79  E-value=9.2e-05  Score=69.30  Aligned_cols=77  Identities=21%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             EecCCCcHHHHHHHHhhccCc----eee------cC------CCCceeEE---EEEeeCCeEEEEECCCCCCCCChHHHH
Q 029512           98 AGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK  158 (192)
Q Consensus        98 vG~~n~GKStlin~L~~~~~~----~~~------~~------~~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~~~~~~  158 (192)
                      +|+.|+|||||+++|+.....    ..+      .+      ..|.|...   .+...+..+.+|||||...      ..
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~------~~   74 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD------FT   74 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH------HH
Confidence            599999999999999654211    001      11      12344433   2333578899999999742      11


Q ss_pred             HHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          159 DAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..+..     ....+|++++++|++..
T Consensus        75 ~~~~~-----~l~~aD~vllvvd~~~~   96 (668)
T PRK12740         75 GEVER-----ALRVLDGAVVVVCAVGG   96 (668)
T ss_pred             HHHHH-----HHHHhCeEEEEEeCCCC
Confidence            11111     12357999999998764

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=0.00015  Score=63.60  Aligned_cols=85  Identities=19%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc-----------------------CceeecC------CCCceeEEE---EEeeCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----------------------GVVRTSD------KPGLTQTIN---FFKLGT  138 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~-----------------------~~~~~~~------~~g~T~~~~---~~~~~~  138 (192)
                      +..+++++|...+|||||+-.|+-..                       .++-+-+      .-|.|.+..   +.....
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~   85 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY   85 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence            45689999999999999999997321                       0111111      235666653   223356


Q ss_pred             eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512          139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      .+.|+|+||-.     +...++      +..+..+|.-++||||++..
T Consensus        86 ~~tIiDaPGHr-----dFvknm------ItGasqAD~aVLVV~a~~~e  122 (428)
T COG5256          86 NFTIIDAPGHR-----DFVKNM------ITGASQADVAVLVVDARDGE  122 (428)
T ss_pred             eEEEeeCCchH-----HHHHHh------hcchhhccEEEEEEECCCCc
Confidence            79999999932     333333      45566789999999999875

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.76  E-value=0.00015  Score=64.94  Aligned_cols=83  Identities=22%  Similarity=0.297  Sum_probs=53.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc-----------------------e------eecCCCCceeEEEEEe---eCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------V------RTSDKPGLTQTINFFK---LGT  138 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-----------------------~------~~~~~~g~T~~~~~~~---~~~  138 (192)
                      +..+++++|..++|||||+-+|+.....                       +      ......|.|.+.....   .+.
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            3468999999999999999988742210                       0      0001225666654333   367


Q ss_pred             eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .+.++||||..     +...+.      +.....+|..++|+|+..
T Consensus        86 ~i~liDtPGh~-----df~~~~------~~g~~~aD~aIlVVda~~  120 (447)
T PLN00043         86 YCTVIDAPGHR-----DFIKNM------ITGTSQADCAVLIIDSTT  120 (447)
T ss_pred             EEEEEECCCHH-----HHHHHH------HhhhhhccEEEEEEEccc
Confidence            89999999942     222222      233457899999999975

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.00026  Score=54.51  Aligned_cols=56  Identities=23%  Similarity=0.254  Sum_probs=35.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc---eeEEEEEeeCCeEEEEECCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPG  147 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~---T~~~~~~~~~~~~~lvDtPG  147 (192)
                      ..+++++|++|+|||.|+........-..++...|+   ++-++..-...++.+|||+|
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG   67 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG   67 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc
Confidence            458999999999999999988865311222222222   12222222246789999999

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=5.9e-05  Score=65.98  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++|+|++|+||||++..|...
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999864

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00029  Score=63.45  Aligned_cols=80  Identities=18%  Similarity=0.354  Sum_probs=59.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee------CCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~------~~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ..|.|.++|+-.-|||||+..|.+..  .......|.|++.-.++.      ...+.++||||-          .+|..|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH----------eAFt~m   71 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH----------EAFTAM   71 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCc--cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH----------HHHHHH
Confidence            46899999999999999999999873  333445579999865442      268999999992          245444


Q ss_pred             HhhhccCceeEEEEEEecC
Q 029512          165 VSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s  183 (192)
                      .. ....-.|.+++|||+-
T Consensus        72 Ra-RGa~vtDIaILVVa~d   89 (509)
T COG0532          72 RA-RGASVTDIAILVVAAD   89 (509)
T ss_pred             Hh-cCCccccEEEEEEEcc
Confidence            43 3345679999999874

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.0003  Score=63.80  Aligned_cols=80  Identities=25%  Similarity=0.458  Sum_probs=59.9

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ++.|.|-++|.-.=|||||+.+|.+..  .-.+...|.|++.-.+.    .|..++++||||-          .+|.+|.
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH----------aAF~aMR  218 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSS--VAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH----------AAFSAMR  218 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCc--eehhhcCCccceeceEEEecCCCCEEEEecCCcH----------HHHHHHH
Confidence            467899999999999999999999973  33345568999986544    4889999999993          2566664


Q ss_pred             hhhccCceeEEEEEEec
Q 029512          166 SISYRNFWSCTCFLIYI  182 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~  182 (192)
                      . ..+...|.+++||-+
T Consensus       219 a-RGA~vtDIvVLVVAa  234 (683)
T KOG1145|consen  219 A-RGANVTDIVVLVVAA  234 (683)
T ss_pred             h-ccCccccEEEEEEEc
Confidence            3 334556888888744

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.65  E-value=0.00013  Score=65.51  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ....|+++|.-..|||||+.+|++.+
T Consensus        33 ~~~~ig~~GHVDhGKTtLv~aLtg~~   58 (460)
T PTZ00327         33 ATINIGTIGHVAHGKSTVVKALSGVK   58 (460)
T ss_pred             CcEEEEEEccCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999853

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.63  E-value=0.00019  Score=59.12  Aligned_cols=19  Identities=21%  Similarity=0.403  Sum_probs=16.5

Q ss_pred             EEecCCCcHHHHHHHHhhc
Q 029512           97 FAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        97 lvG~~n~GKStlin~L~~~  115 (192)
                      ++|++|+||||+++++...
T Consensus         1 ViGpaGSGKTT~~~~~~~~   19 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEW   19 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHH
Confidence            5899999999999999853

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.0002  Score=55.67  Aligned_cols=82  Identities=17%  Similarity=0.317  Sum_probs=55.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      .-++++.|-.|+|||||++.|-.. +.+.--++..-|.+ ...-.+-++.-+|.-|      ....++.|.++.-     
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE-~l~Ig~m~ftt~DLGG------H~qArr~wkdyf~-----   86 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE-ELSIGGMTFTTFDLGG------HLQARRVWKDYFP-----   86 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChH-HheecCceEEEEcccc------HHHHHHHHHHHHh-----
Confidence            348999999999999999999876 33322233222322 1112367788888877      4445677777754     


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .++.+++++|+.+.+
T Consensus        87 ~v~~iv~lvda~d~e  101 (193)
T KOG0077|consen   87 QVDAIVYLVDAYDQE  101 (193)
T ss_pred             hhceeEeeeehhhHH
Confidence            468889999987754

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=0.00017  Score=64.03  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++++|++|+||||++..|.+.
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999864

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.62  E-value=0.00026  Score=56.62  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=19.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+++||++||||||.+-.|...
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~   24 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAAR   24 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHhHHHHHHHH
Confidence            6899999999999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.59  E-value=0.00028  Score=54.35  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      |.++++|..|+|||||++.+.+.
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            46789999999999999999865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.00025  Score=53.85  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+.+|-+++||||++-.|.-.. ...+-++.|...+...+ -+..+.++|.-|      ++.++..|..+..     
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty-kN~kfNvwdvGG------qd~iRplWrhYy~-----   83 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY-KNVKFNVWDVGG------QDKIRPLWRHYYT-----   83 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe-eeeEEeeeeccC------chhhhHHHHhhcc-----
Confidence            4578889999999999999998652 23333444444442222 366778888777      4455556655532     


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .-.++|+|+|+.+.|
T Consensus        84 gtqglIFV~Dsa~~d   98 (180)
T KOG0071|consen   84 GTQGLIFVVDSADRD   98 (180)
T ss_pred             CCceEEEEEeccchh
Confidence            234566666665543

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.00015  Score=58.33  Aligned_cols=56  Identities=34%  Similarity=0.355  Sum_probs=38.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeec-CCCC---ceeEEEEEeeCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPG---LTQTINFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~~g---~T~~~~~~~~~~~~~lvDtPG~  148 (192)
                      .++|+++|.|+||||-|+...+... +..-+ .+.|   .|+.+.......+..||||+|-
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ   73 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ   73 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceeecCcEEEEeeecccch
Confidence            4689999999999999999999863 33222 2223   3444333333467899999993

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.53  E-value=0.00033  Score=62.13  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..++++|++|+||||++..|..
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999985

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.51  E-value=0.0012  Score=56.55  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++++|++|+||||++..|.+.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~  137 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHK  137 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3568999999999999999999864

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.50  E-value=0.00096  Score=56.01  Aligned_cols=92  Identities=15%  Similarity=0.190  Sum_probs=52.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc-----Cceeec-CCC--C---------ceeEEEEE-------------------
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-DKP--G---------LTQTINFF-------------------  134 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~-~~~--g---------~T~~~~~~-------------------  134 (192)
                      ....++++|++|+||||++..|....     .+.... +..  +         .-......                   
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~  150 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA  150 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence            34588999999999999999887431     111111 110  0         00001111                   


Q ss_pred             -eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc---cCceeEEEEEEecCC
Q 029512          135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY---RNFWSCTCFLIYIFY  184 (192)
Q Consensus       135 -~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~---~~~~~~v~~vvD~s~  184 (192)
                       ..+..+.++||||....  +......+..+.+...   ....+.+++|+|+.-
T Consensus       151 ~~~~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~  202 (272)
T TIGR00064       151 KARNIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT  202 (272)
T ss_pred             HHCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Confidence             12467999999997642  3333334444443211   234688999999864

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00043  Score=64.05  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+|++.|.+++||||++|+++..
T Consensus       109 ~mKV~ifGrts~GKSt~iNAmL~~  132 (749)
T KOG0448|consen  109 HMKVAIFGRTSAGKSTVINAMLHK  132 (749)
T ss_pred             ccEEEEeCCCCCcHHHHHHHHHHH
Confidence            459999999999999999999965

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.48  E-value=0.00011  Score=55.38  Aligned_cols=53  Identities=23%  Similarity=0.201  Sum_probs=32.5

Q ss_pred             EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eCCeEEEEECCC
Q 029512           95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPG  147 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~~~~~lvDtPG  147 (192)
                      ++|+|+||+|||||++.|.+..........+.+|+.+.... .+..+.++|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~   55 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEE   55 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHH
Confidence            68999999999999999998632122223334565543222 245555555433

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.47  E-value=8.1e-05  Score=61.35  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +--|+++|+||||||||+|.+.|-.
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4478999999999999999999863

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.0005  Score=62.57  Aligned_cols=84  Identities=17%  Similarity=0.192  Sum_probs=56.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc-----------------------Cc------eeecCCCCceeEEEEEe---eCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW-----------------------GV------VRTSDKPGLTQTINFFK---LGT  138 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~-----------------------~~------~~~~~~~g~T~~~~~~~---~~~  138 (192)
                      ....++++|..++|||||+..|+-..                       .+      .......|+|.+....+   ...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            55688999999999999999997321                       00      01112235777664322   356


Q ss_pred             eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .+.|+|+||..+-.+     ++      +.....+|+.++||||+.-
T Consensus       256 ~~tliDaPGhkdFi~-----nm------i~g~sqaD~avLvvd~s~~  291 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIP-----NM------ISGASQADVAVLVVDASTG  291 (603)
T ss_pred             eEEEecCCCccccch-----hh------hccccccceEEEEEECCcc
Confidence            799999999543222     22      4456678999999999864

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=97.44  E-value=0.00023  Score=55.35  Aligned_cols=53  Identities=32%  Similarity=0.347  Sum_probs=34.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeec-CCCCce---eEEEEEee--CCeEEEEECCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLT---QTINFFKL--GTKLCLVDLPG  147 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~~g~T---~~~~~~~~--~~~~~lvDtPG  147 (192)
                      .+++++|.+-||||+|+...+..+ .+.-+ ++-|+.   +-. ....  ..++.||||+|
T Consensus         9 frlivigdstvgkssll~~ft~gk-faelsdptvgvdffarli-e~~pg~riklqlwdtag   67 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGK-FAELSDPTVGVDFFARLI-ELRPGYRIKLQLWDTAG   67 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCc-ccccCCCccchHHHHHHH-hcCCCcEEEEEEeeccc
Confidence            478899999999999999999763 33333 332321   111 1111  35789999999

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.00036  Score=54.67  Aligned_cols=84  Identities=20%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC---ceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g---~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...++|.|..|+||+|++-++-.....+...-.+.   .|.-.+...   ....+.+||.-|      ++.++..|..+-
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG------Qe~lrSlw~~yY   90 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG------QESLRSLWKKYY   90 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC------hHHHHHHHHHHH
Confidence            34789999999999999998875421111111111   122222221   267789999887      677888998886


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      .     .+.++++++|+.+++
T Consensus        91 ~-----~~H~ii~viDa~~~e  106 (197)
T KOG0076|consen   91 W-----LAHGIIYVIDATDRE  106 (197)
T ss_pred             H-----HhceeEEeecCCCHH
Confidence            5     468999999999865

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.00043  Score=63.19  Aligned_cols=76  Identities=16%  Similarity=0.240  Sum_probs=44.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC-ceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      +...++++|+||+||||||.+|.............| .|.-   ..-...+.++.+|.            .+..+++  -
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvv---sgK~RRiTflEcp~------------Dl~~miD--v  130 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVV---SGKTRRITFLECPS------------DLHQMID--V  130 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEe---ecceeEEEEEeChH------------HHHHHHh--H
Confidence            445777999999999999999998631111112112 1111   01134567777772            1223322  2


Q ss_pred             cCceeEEEEEEecC
Q 029512          170 RNFWSCTCFLIYIF  183 (192)
Q Consensus       170 ~~~~~~v~~vvD~s  183 (192)
                      ++-+|+|+++||+.
T Consensus       131 aKIaDLVlLlIdgn  144 (1077)
T COG5192         131 AKIADLVLLLIDGN  144 (1077)
T ss_pred             HHhhheeEEEeccc
Confidence            33468889998874

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.36  E-value=0.00016  Score=57.28  Aligned_cols=40  Identities=15%  Similarity=0.045  Sum_probs=28.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI  131 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~  131 (192)
                      +...|+|+|++|+|||||++.|+... .......+.|||.+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~-~~~~~~v~~TTR~~   42 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH-PDFLFSISCTTRAP   42 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC-CccccccCccCCCC
Confidence            35579999999999999999999863 12233345566654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.35  E-value=0.00059  Score=60.00  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...++|||+|||||||.+-.|....
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~  227 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARY  227 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHH
Confidence            5689999999999999999998753

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.35  E-value=0.00035  Score=61.69  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...|+|+|++|+||||++..|+.
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHH
Confidence            35899999999999999999985

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.32  E-value=0.00014  Score=56.55  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..++|+|++|+|||||++.|.+..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            368999999999999999999863

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.32  E-value=0.00079  Score=58.11  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ....|++.|.+|+|||||++.|..
T Consensus        55 ~~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         55 NALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998764

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.00074  Score=58.83  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...|-|+++|+-..||||+||-|+...
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~d   82 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQD   82 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCC
Confidence            357899999999999999999999863

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=97.29  E-value=0.0013  Score=50.46  Aligned_cols=76  Identities=21%  Similarity=0.196  Sum_probs=43.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE----EEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~----~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      +..|+|.||+|||+|+-......   ..+.+ -+|.-+.    ...   ...+++||||+|      ++    .|..+.+
T Consensus        10 kllIigDsgVGKssLl~rF~ddt---Fs~sY-itTiGvDfkirTv~i~G~~VkLqIwDtAG------qE----rFrtits   75 (198)
T KOG0079|consen   10 KLLIIGDSGVGKSSLLLRFADDT---FSGSY-ITTIGVDFKIRTVDINGDRVKLQIWDTAG------QE----RFRTITS   75 (198)
T ss_pred             HHHeecCCcccHHHHHHHHhhcc---cccce-EEEeeeeEEEEEeecCCcEEEEEEeeccc------HH----HHHHHHH
Confidence            55788999999999998777542   11221 1222111    112   235789999999      33    3334433


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                       ...+.-.++++|.|...
T Consensus        76 -tyyrgthgv~vVYDVTn   92 (198)
T KOG0079|consen   76 -TYYRGTHGVIVVYDVTN   92 (198)
T ss_pred             -HHccCCceEEEEEECcc
Confidence             11233456777777643

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.00013  Score=57.78  Aligned_cols=39  Identities=26%  Similarity=0.197  Sum_probs=28.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN  132 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~  132 (192)
                      +..++|.|+||||||||+++|....  ...-....|||.+.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR   42 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPR   42 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCC
Confidence            4578999999999999999999874  22222334666554

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.26  E-value=0.00026  Score=56.30  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..-.++++|++|+|||||+|.+.|-
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhc
Confidence            3458999999999999999999985

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0017  Score=49.71  Aligned_cols=54  Identities=26%  Similarity=0.257  Sum_probs=35.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCC---CCceeEEEEEe---eCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---PGLTQTINFFK---LGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~---~g~T~~~~~~~---~~~~~~lvDtPG~  148 (192)
                      ..++.++|.+.+||+|++...++..   .++..   -|.--.....+   -..++++|||+|-
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddS---Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagq   80 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDS---FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ   80 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccc---cccceeeeeeeeEEEeEeeecccEEEEEEEecccc
Confidence            4599999999999999999999873   11111   11111111111   2467999999994

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.23  E-value=0.00033  Score=51.81  Aligned_cols=25  Identities=32%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEccCCCccccceeeecccc
Confidence            4589999999999999999999974

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.001  Score=65.49  Aligned_cols=93  Identities=18%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCce-----eecCCCCceeEEEEEeeCCeEEEEECCCCCC-C-CChHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPGLTQTINFFKLGTKLCLVDLPGYGF-A-YAKEEVKDAWE  162 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~-----~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~-~-~~~~~~~~~~~  162 (192)
                      ...|.-++||++|+||||++...--...+.     ..-..+| |+.|.+. .+..-+++||.|=.. . ...+.....|.
T Consensus       123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W~  200 (1188)
T COG3523         123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEWL  200 (1188)
T ss_pred             hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCcc-cccceEEEcCCcceecccCcchhhHHHHH
Confidence            467899999999999999987654321111     1122334 7887754 366779999999433 2 24456677898


Q ss_pred             HHHh----hhccCceeEEEEEEecCC
Q 029512          163 ELVS----ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       163 ~~~~----l~~~~~~~~v~~vvD~s~  184 (192)
                      .+++    ....+.+++|++-+|.++
T Consensus       201 ~fL~lLkk~R~~~piNGiiltlsv~~  226 (1188)
T COG3523         201 GFLGLLKKYRRRRPLNGIILTLSVSD  226 (1188)
T ss_pred             HHHHHHHHhccCCCCceEEEEEEHHH
Confidence            8877    456788999999998753

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.18  E-value=0.00032  Score=56.30  Aligned_cols=25  Identities=24%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++|+|++|+|||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4457889999999999999999864

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.16  E-value=0.00073  Score=63.96  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++++|++|+||||++..|++.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhh
Confidence            348899999999999999999964

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.15  E-value=0.00031  Score=57.42  Aligned_cols=25  Identities=36%  Similarity=0.310  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|+||+|||||+|.|.+-.
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccc
Confidence            4489999999999999999998753

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.15  E-value=0.00074  Score=61.51  Aligned_cols=86  Identities=14%  Similarity=0.106  Sum_probs=54.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCC-CCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ...+|+++|..||||||||-+|+.......+... +-+|.=........+..++||.--  ......+         ..+
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~--~~~~~~l---------~~E   76 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSD--SDDRLCL---------RKE   76 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccc--cchhHHH---------HHH
Confidence            3569999999999999999999987422222221 112222334455667899999831  1111111         234


Q ss_pred             cCceeEEEEEEecCCceE
Q 029512          170 RNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~~  187 (192)
                      .+.+++++++..+.++.+
T Consensus        77 irkA~vi~lvyavd~~~T   94 (625)
T KOG1707|consen   77 IRKADVICLVYAVDDEST   94 (625)
T ss_pred             HhhcCEEEEEEecCChHH
Confidence            466889999888777654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.13  E-value=0.0013  Score=58.52  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++++|++||||||++..|...
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~  244 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAAR  244 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999888753

>PRK13768 GTPase; Provisional

Probab=97.10  E-value=0.00091  Score=55.45  Aligned_cols=44  Identities=30%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             CeEEEEECCCCCCCCChHHHHHHHHHHHh-hhccCceeEEEEEEecCCc
Q 029512          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVS-ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       138 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.++||||.......   ...+..+.+ +.... .+.+++|+|+++.
T Consensus        97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~~~-~~~ii~liD~~~~  141 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF---RESGRKLVERLSGSS-KSVVVFLIDAVLA  141 (253)
T ss_pred             CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHhcC-CeEEEEEechHHh
Confidence            46999999996542221   223444444 32222 7899999999653

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.0022  Score=56.15  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc-----CceeecC---CCC--------ceeE-EEEEe-----------------
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD---KPG--------LTQT-INFFK-----------------  135 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~---~~g--------~T~~-~~~~~-----------------  135 (192)
                      ...-.|++||-.|+||||.+-.|...+     +.+-+..   .+|        .|+. +.+|.                 
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence            445588999999999999999998432     1111111   111        1111 11111                 


Q ss_pred             ---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       136 ---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                         ++..+.|+||.|=..  ..   ...|.++.++.+.-.-|.+++|+|++-
T Consensus       179 fKke~fdvIIvDTSGRh~--qe---~sLfeEM~~v~~ai~Pd~vi~VmDasi  225 (483)
T KOG0780|consen  179 FKKENFDVIIVDTSGRHK--QE---ASLFEEMKQVSKAIKPDEIIFVMDASI  225 (483)
T ss_pred             HHhcCCcEEEEeCCCchh--hh---HHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence               246799999999432  12   346777777777777899999999863

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.08  E-value=0.00071  Score=44.20  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...+|.|++|+||||++.++.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999874

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.05  E-value=0.00058  Score=49.37  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|.|+||+||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999986

...

>PRK14974 cell division protein FtsY; Provisional

Probab=97.04  E-value=0.00099  Score=57.61  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...|+++|.+|+||||++..|+.
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~  162 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAY  162 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            45899999999999998888874

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.04  E-value=0.00069  Score=53.73  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+..|+|+|++|+|||||++.|.+..
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34589999999999999999999874

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.02  E-value=0.0005  Score=55.05  Aligned_cols=31  Identities=16%  Similarity=0.342  Sum_probs=25.7

Q ss_pred             cCCCCCCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.+...+.+.|+++|++|+|||||++.|+..
T Consensus        15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             HHhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3344456789999999999999999999865

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.00  E-value=0.00066  Score=53.44  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            35589999999999999999999863

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.99  E-value=0.00069  Score=54.29  Aligned_cols=26  Identities=35%  Similarity=0.309  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            35589999999999999999999863

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.99  E-value=0.00068  Score=54.07  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34588999999999999999999863

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.99  E-value=0.0007  Score=54.26  Aligned_cols=26  Identities=23%  Similarity=0.251  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999963

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.00052  Score=59.29  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +--++|+|+||||||||++.|.|-.
T Consensus        29 Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          29 GEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999863

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.98  E-value=0.00071  Score=54.97  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.97  E-value=0.0065  Score=54.35  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ....|+++|.+|+||||++..|+.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            345889999999999999998874

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.0019  Score=58.73  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=55.4

Q ss_pred             CCCCCCCeEEEEecCCCcHHHHHHHHhhccCc-------------eeecCCCCceeEEE---EEeeC---CeEEEEECCC
Q 029512           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTIN---FFKLG---TKLCLVDLPG  147 (192)
Q Consensus        87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~-------------~~~~~~~g~T~~~~---~~~~~---~~~~lvDtPG  147 (192)
                      .|..+..++++|..-.=|||||...|+...+.             -.+.-.-|.|...+   .++.+   ..+.+|||||
T Consensus        55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG  134 (650)
T ss_pred             CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence            34456678899999999999999999865320             11112345665554   23333   6799999999


Q ss_pred             CCC-CCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          148 YGF-AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       148 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      -.+ ...-+   +.         ...++++++|||++.
T Consensus       135 HvDFs~EVs---Rs---------laac~G~lLvVDA~q  160 (650)
T KOG0462|consen  135 HVDFSGEVS---RS---------LAACDGALLVVDASQ  160 (650)
T ss_pred             cccccceeh---eh---------hhhcCceEEEEEcCc
Confidence            654 22111   11         124699999999975

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.97  E-value=0.00066  Score=54.20  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .++|+|++|+|||||++.|+|..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999999863

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.96  E-value=0.0045  Score=53.70  Aligned_cols=82  Identities=20%  Similarity=0.297  Sum_probs=53.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc-----eeecCCCCceeEEEEEee------------CCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-----~~~~~~~g~T~~~~~~~~------------~~~~~lvDtPG~~~~~~  153 (192)
                      ...++++.|.-.+||+||-.+|..-...     ...+-.-|.|-|.-+...            .-++.++|+||-     
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH-----   80 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH-----   80 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-----
Confidence            3468999999999999999999854211     112223355555543321            235799999993     


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s  183 (192)
                       ..+.+   .+  +....-+|+.++|||+.
T Consensus        81 -asLIR---ti--iggaqiiDlm~lviDv~  104 (522)
T KOG0461|consen   81 -ASLIR---TI--IGGAQIIDLMILVIDVQ  104 (522)
T ss_pred             -HHHHH---HH--HhhhheeeeeeEEEehh
Confidence             22222   22  56677789999999974

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.94  E-value=0.004  Score=54.84  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +...++++|++|+||||++..|..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999999985

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.94  E-value=0.0052  Score=54.17  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...|+++|++|+||||++..|+.
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999985

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.93  E-value=0.00085  Score=54.16  Aligned_cols=25  Identities=36%  Similarity=0.417  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRL   49 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3558999999999999999999996

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.92  E-value=0.00087  Score=53.47  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999863

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.92  E-value=0.00087  Score=53.57  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.92  E-value=0.00093  Score=52.54  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=21.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .+-.++|+|++|+|||||+|.+++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            455899999999999999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.91  E-value=0.0009  Score=53.80  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4588999999999999999999863

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.91  E-value=0.00088  Score=53.27  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.90  E-value=0.00093  Score=52.50  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.90  E-value=0.00092  Score=53.37  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999963

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.90  E-value=0.00092  Score=53.69  Aligned_cols=26  Identities=31%  Similarity=0.295  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999863

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.89  E-value=0.00094  Score=54.41  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999999863

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.88  E-value=0.00097  Score=53.31  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.88  E-value=0.00093  Score=53.01  Aligned_cols=25  Identities=32%  Similarity=0.274  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4589999999999999999999863

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.87  E-value=0.00099  Score=53.13  Aligned_cols=26  Identities=12%  Similarity=0.178  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34588999999999999999999963

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.86  E-value=0.0053  Score=51.53  Aligned_cols=25  Identities=32%  Similarity=0.571  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +...++++|++|+||||++..|++.
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~   98 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQ   98 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHH
Confidence            4579999999999999999999764

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.85  E-value=0.00097  Score=53.62  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999999863

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.85  E-value=0.0011  Score=50.12  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++++|++|+|||||++.|.|..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34588999999999999999999964

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.85  E-value=0.00096  Score=53.57  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.85  E-value=0.0011  Score=51.10  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ++-.++|+|++|+|||||++.|.|..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999999863

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.84  E-value=0.0011  Score=53.26  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4489999999999999999999963

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.84  E-value=0.0011  Score=53.48  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999863

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.84  E-value=0.0011  Score=53.40  Aligned_cols=25  Identities=16%  Similarity=0.150  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4589999999999999999999863

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.83  E-value=0.0011  Score=53.70  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999864

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.82  E-value=0.0012  Score=50.03  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      |.|+++|+.|+|||||+..|.+.
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999864

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.81  E-value=0.0012  Score=53.48  Aligned_cols=26  Identities=12%  Similarity=0.188  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.81  E-value=0.0011  Score=52.93  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34589999999999999999999863

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.80  E-value=0.0013  Score=51.34  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3458899999999999999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.80  E-value=0.0032  Score=57.54  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ....++|+|++|+||||++..|..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999985

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.80  E-value=0.0012  Score=52.62  Aligned_cols=26  Identities=23%  Similarity=0.265  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999963

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.80  E-value=0.0012  Score=52.10  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999963

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.80  E-value=0.0012  Score=53.62  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999999863

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.79  E-value=0.0012  Score=54.24  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3458999999999999999999985

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.79  E-value=0.0012  Score=53.70  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999996

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.79  E-value=0.0013  Score=52.11  Aligned_cols=26  Identities=19%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999964

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.79  E-value=0.0013  Score=51.82  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++++|++|+|||||+++|++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            348999999999999999999985

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.79  E-value=0.0013  Score=52.17  Aligned_cols=26  Identities=15%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ++-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45589999999999999999999864

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.78  E-value=0.0013  Score=54.48  Aligned_cols=26  Identities=23%  Similarity=0.288  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.78  E-value=0.0013  Score=53.12  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            34579999999999999999999863

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.78  E-value=0.0013  Score=52.37  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            34588999999999999999999863

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR00235 udk uridine kinase

Probab=96.78  E-value=0.0011  Score=52.98  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+..|+|+|++|+|||||.+.|.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999975

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.78  E-value=0.0013  Score=53.68  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999864

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.78  E-value=0.0013  Score=52.69  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            4588999999999999999999863

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10908 cell division protein FtsE; Provisional

Probab=96.77  E-value=0.0013  Score=52.90  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999999864

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.77  E-value=0.0012  Score=53.50  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            34589999999999999999999863

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.76  E-value=0.0012  Score=51.96  Aligned_cols=23  Identities=39%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .++|+|++|+|||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999998763

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.76  E-value=0.0014  Score=53.29  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4489999999999999999999863

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.76  E-value=0.0014  Score=53.75  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.75  E-value=0.0057  Score=44.29  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             EEEEecCCCcHHHHHHHHhhcc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~~  116 (192)
                      |++.|++|+|||++++.++...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6799999999999999999863

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.75  E-value=0.0014  Score=51.33  Aligned_cols=26  Identities=19%  Similarity=0.169  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN02772 guanylate kinase

Probab=96.75  E-value=0.0014  Score=57.58  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=30.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF  133 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~  133 (192)
                      ....++|+|++||||+||++.|............+.|||.+..
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~  176 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRE  176 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcc
Confidence            4458999999999999999999875321222244557776654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.75  E-value=0.0014  Score=52.93  Aligned_cols=26  Identities=35%  Similarity=0.346  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            34589999999999999999999973

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.75  E-value=0.0014  Score=53.79  Aligned_cols=26  Identities=35%  Similarity=0.437  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34589999999999999999999963

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.75  E-value=0.0012  Score=59.92  Aligned_cols=26  Identities=35%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ++-+++++|++|+|||||+|.|+|-.
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56699999999999999999999864

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.75  E-value=0.0014  Score=53.43  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.74  E-value=0.0015  Score=52.26  Aligned_cols=26  Identities=15%  Similarity=0.323  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999973

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0012  Score=60.10  Aligned_cols=27  Identities=33%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..+..+++||+||+|||||+|.|.|-.
T Consensus       345 ~~g~~talvG~SGaGKSTLl~lL~G~~  371 (559)
T COG4988         345 KAGQLTALVGASGAGKSTLLNLLLGFL  371 (559)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence            356699999999999999999999863

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.74  E-value=0.0015  Score=52.02  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999864

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.74  E-value=0.0014  Score=54.59  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|||||||+++|.|-
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3558899999999999999999984

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.73  E-value=0.0015  Score=54.25  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=23.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~   50 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKL   50 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45589999999999999999999974

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.73  E-value=0.0015  Score=53.33  Aligned_cols=26  Identities=12%  Similarity=0.166  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999999963

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.73  E-value=0.0014  Score=54.60  Aligned_cols=26  Identities=27%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999999863

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.73  E-value=0.0015  Score=53.14  Aligned_cols=26  Identities=31%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999999863

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.72  E-value=0.0016  Score=50.89  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999863

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.72  E-value=0.0015  Score=52.85  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.71  E-value=0.0015  Score=52.97  Aligned_cols=26  Identities=27%  Similarity=0.184  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999974

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.71  E-value=0.0015  Score=50.75  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++|+|++|+||||+++.|.+.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=96.71  E-value=0.0066  Score=54.42  Aligned_cols=83  Identities=27%  Similarity=0.344  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc--------eeecC------CCCceeEE---EEEeeCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~--------~~~~~------~~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~  153 (192)
                      ...+|+++..-.-|||||+..|+.....        ..+.+      .-|.|.-.   ...+.+..+.++||||-.+-. 
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG-   82 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG-   82 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc-
Confidence            3458999999999999999999975310        01111      12344322   133457899999999954311 


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       .+..+    ++     ..+|.++++||++.
T Consensus        83 -GEVER----vl-----~MVDgvlLlVDA~E  103 (603)
T COG1217          83 -GEVER----VL-----SMVDGVLLLVDASE  103 (603)
T ss_pred             -chhhh----hh-----hhcceEEEEEEccc
Confidence             11111    11     24699999999864

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=96.71  E-value=0.0046  Score=58.28  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=52.2

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccC----ceeec------C------CCCceeEE---EEEeeC-CeEEEEECCCCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------D------KPGLTQTI---NFFKLG-TKLCLVDLPGYG  149 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------~------~~g~T~~~---~~~~~~-~~~~lvDtPG~~  149 (192)
                      ....+|+++|+..+|||||.-+|+-..+    ...+.      +      .-|.|...   ..++.+ ..++++||||-.
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            3456999999999999999999984321    11111      1      11344332   244454 899999999976


Q ss_pred             CCCChHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512          150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s  183 (192)
                      +-.  .+....         .+.+|+.++|+|+-
T Consensus        88 DFt--~EV~rs---------lrvlDgavvVvdav  110 (697)
T COG0480          88 DFT--IEVERS---------LRVLDGAVVVVDAV  110 (697)
T ss_pred             ccH--HHHHHH---------HHhhcceEEEEECC
Confidence            521  111111         23468999999873

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=96.70  E-value=0.0015  Score=53.50  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         31 NEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999985

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.70  E-value=0.0037  Score=50.91  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....+++|+||||||||+..|-.-
T Consensus        33 ~~VTAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          33 NKVTALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             CceEEEECCCCcCHHHHHHHHHhh
Confidence            457899999999999999988764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.69  E-value=0.0019  Score=46.29  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..++++|++|+||||++..|....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcc
Confidence            578999999999999999999763

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.69  E-value=0.0017  Score=50.42  Aligned_cols=26  Identities=12%  Similarity=0.222  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.68  E-value=0.0015  Score=52.04  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccC
Confidence            34589999999999999999999963

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.68  E-value=0.0017  Score=53.15  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.68  E-value=0.0017  Score=52.11  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999964

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.68  E-value=0.0017  Score=53.26  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         27 QNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3458999999999999999999985

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.68  E-value=0.0017  Score=53.30  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262         29 NQITAIIGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999985

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.68  E-value=0.0017  Score=53.38  Aligned_cols=26  Identities=31%  Similarity=0.431  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34588999999999999999999963

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.68  E-value=0.0017  Score=52.98  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34588999999999999999999863

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.68  E-value=0.0017  Score=52.50  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3458999999999999999999986

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.68  E-value=0.0017  Score=53.62  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~   61 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLM   61 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3458999999999999999999986

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.67  E-value=0.0017  Score=53.44  Aligned_cols=26  Identities=35%  Similarity=0.400  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            35589999999999999999999863

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.67  E-value=0.0046  Score=50.27  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ....++|.|++|+|||||++.|.+..
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999763

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=96.67  E-value=0.0016  Score=53.71  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|..
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            34589999999999999999999963

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.67  E-value=0.0017  Score=54.12  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45589999999999999999999863

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.67  E-value=0.0018  Score=52.67  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            35589999999999999999999863

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.67  E-value=0.0018  Score=51.62  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999963

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.67  E-value=0.0017  Score=53.72  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3458999999999999999999986

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.66  E-value=0.0017  Score=52.69  Aligned_cols=25  Identities=32%  Similarity=0.379  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999999863

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.66  E-value=0.0018  Score=53.09  Aligned_cols=26  Identities=35%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            35589999999999999999999864

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.66  E-value=0.0018  Score=51.49  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|.|.
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3558999999999999999999996

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.66  E-value=0.0018  Score=51.66  Aligned_cols=26  Identities=31%  Similarity=0.283  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999863

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.66  E-value=0.0019  Score=51.49  Aligned_cols=26  Identities=35%  Similarity=0.470  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34589999999999999999999863

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.65  E-value=0.0019  Score=50.28  Aligned_cols=26  Identities=42%  Similarity=0.549  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++++|++|+|||||++.|+|..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34589999999999999999999863

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.65  E-value=0.0018  Score=53.79  Aligned_cols=26  Identities=35%  Similarity=0.359  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.65  E-value=0.0018  Score=53.20  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRM   53 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3458999999999999999999996

>TIGR00959 ffh signal recognition particle protein

Probab=96.65  E-value=0.0075  Score=53.83  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=19.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...++++|.+|+||||+.-.|+.
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~  121 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAY  121 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHH
Confidence            34788999999999999776653

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.65  E-value=0.0016  Score=53.46  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            35589999999999999999999863

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.65  E-value=0.0015  Score=52.25  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      -.++|+|++|+|||||++.|+|..
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCC
Confidence            488999999999999999999863

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.65  E-value=0.0019  Score=51.85  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            35589999999999999999999863

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.65  E-value=0.002  Score=49.97  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34589999999999999999999863

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.64  E-value=0.002  Score=49.80  Aligned_cols=26  Identities=35%  Similarity=0.565  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++++|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.64  E-value=0.0018  Score=53.19  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=96.64  E-value=0.0018  Score=54.92  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~   43 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTLL   43 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34588999999999999999999863

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.64  E-value=0.0017  Score=54.03  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         27 SPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCC
Confidence            4589999999999999999999863

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.64  E-value=0.0018  Score=53.03  Aligned_cols=25  Identities=36%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3458999999999999999999985

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.63  E-value=0.0016  Score=47.19  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~  113 (192)
                      .-.++|+|++|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            3478999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.63  E-value=0.0019  Score=51.96  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999874

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10867 signal recognition particle protein; Provisional

Probab=96.63  E-value=0.024  Score=50.73  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...|+++|.+|+||||+.-.|+.
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHH
Confidence            45789999999999998777764

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.63  E-value=0.0018  Score=53.78  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34589999999999999999999863

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.63  E-value=0.0019  Score=53.25  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        25 Ge~~~i~G~NGsGKSTLlk~L~G~   48 (246)
T cd03237          25 SEVIGILGPNGIGKTTFIKMLAGV   48 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999986

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=96.63  E-value=0.0019  Score=51.97  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999963

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.63  E-value=0.0019  Score=53.73  Aligned_cols=26  Identities=15%  Similarity=0.132  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=96.63  E-value=0.0019  Score=53.64  Aligned_cols=26  Identities=38%  Similarity=0.509  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         44 EKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45589999999999999999999963

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.62  E-value=0.002  Score=47.79  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+++|+||+||||+...|...
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999954

...

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.62  E-value=0.0019  Score=53.01  Aligned_cols=25  Identities=36%  Similarity=0.581  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|-
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         28 EKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhh
Confidence            3458999999999999999999874

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.62  E-value=0.002  Score=52.18  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34589999999999999999999863

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.61  E-value=0.002  Score=53.56  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3458999999999999999999984

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.61  E-value=0.0018  Score=54.43  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        37 Ge~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         37 NKVTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4489999999999999999999863

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.61  E-value=0.0021  Score=51.63  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          26 TGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            35589999999999999999999964

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.60  E-value=0.0022  Score=50.43  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+.++++|++|+|||||++.|...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3568999999999999999999854

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.60  E-value=0.002  Score=53.70  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3558999999999999999999986

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.60  E-value=0.002  Score=53.69  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            35589999999999999999999863

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.60  E-value=0.002  Score=53.20  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999863

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.60  E-value=0.0019  Score=52.99  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        29 GEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999999974

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.60  E-value=0.0021  Score=52.14  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34589999999999999999999864

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.60  E-value=0.0019  Score=50.96  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|.|.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.60  E-value=0.002  Score=53.22  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999963

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.60  E-value=0.002  Score=51.62  Aligned_cols=26  Identities=35%  Similarity=0.414  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45589999999999999999999863

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.59  E-value=0.002  Score=53.92  Aligned_cols=26  Identities=35%  Similarity=0.446  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547         26 PGRVTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.59  E-value=0.0021  Score=52.38  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=96.59  E-value=0.002  Score=53.02  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (255)
T PRK11231         27 TGKITALIGPNGCGKSTLLKCFARL   51 (255)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3458899999999999999999986

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.59  E-value=0.002  Score=54.18  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~   57 (286)
T PRK13646         32 QGKYYAIVGQTGSGKSTLIQNINALL   57 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=96.59  E-value=0.0034  Score=52.24  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=40.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEEe------eCCeEEEEECCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFK------LGTKLCLVDLPGYGF  150 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~~------~~~~~~lvDtPG~~~  150 (192)
                      +...|.++|...+|||.|+|.|++...--..++ ...+|+-.-...      .+..+.++||.|+++
T Consensus        20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred             CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence            455889999999999999999998532112222 224555432111      245799999999977

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.59  E-value=0.0021  Score=52.67  Aligned_cols=25  Identities=36%  Similarity=0.407  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         30 KELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhcc
Confidence            4489999999999999999999963

>PRK07261 topology modulation protein; Provisional

Probab=96.58  E-value=0.002  Score=50.18  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +|+++|.||+|||||...|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999865

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.58  E-value=0.0017  Score=53.46  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +--|+++|++|+|||||+..|.+.
T Consensus        30 GE~VaiIG~SGaGKSTLLR~lngl   53 (258)
T COG3638          30 GEMVAIIGPSGAGKSTLLRSLNGL   53 (258)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcc
Confidence            448999999999999999999985

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=96.58  E-value=0.0021  Score=53.35  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        36 EGETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35589999999999999999999964

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.58  E-value=0.0022  Score=52.19  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++++|+||+|||||++.|-+-
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            458999999999999999999875

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.58  E-value=0.0021  Score=52.00  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999999863

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=96.58  E-value=0.0021  Score=54.55  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999999863

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.58  E-value=0.002  Score=53.81  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         33 GSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4488999999999999999999863

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.57  E-value=0.0023  Score=51.40  Aligned_cols=25  Identities=40%  Similarity=0.480  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          30 GEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCC
Confidence            4589999999999999999999863

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0021  Score=58.32  Aligned_cols=26  Identities=38%  Similarity=0.677  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-+|+|+|+||+|||||++.|+|.+
T Consensus       363 ~GEkvAIlG~SGsGKSTllqLl~~~~  388 (573)
T COG4987         363 QGEKVAILGRSGSGKSTLLQLLAGAW  388 (573)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhcc
Confidence            35599999999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
1sul_A	195	Crystal Structure Of The Apo-Ysxc Length = 195		3e-19
3pqc_A	195	Crystal Structure Of Thermotoga Maritima Ribosome B		2e-17
1pui_A	210	Structure Of Engb Gtpase Length = 210		2e-17
4dhe_A	223	Crystal Structure Of A Probable Gtp-Binding Protein		4e-15
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		2e-05
2cxx_A	190	Crystal Structure Of A Probable Gtp-binding Protein		2e-05

>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 59/92 (64%)
Query: 74  KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
           K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+NF
Sbjct: 5   KSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF 64
Query: 134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           + +  +L  VD+PGYGFA   +  ++AW  ++
Sbjct: 65  YIINDELHFVDVPGYGFAKVSKSEREAWGRMI 96

>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 75  LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
           +E    A+    +P P   E+AF GRSNVGKSS+LNAL  +  +   S  PG T++INF+
Sbjct: 6   VELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFY 64
Query: 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYI 182
            + +K   VDLPGYG+A   ++ +  W+ LV   ++N WS     + +
Sbjct: 65  LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLV 112

>pdb|1PUI|A Chain A, Structure Of Engb Gtpase Length = 210

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 53/89 (59%)
Query: 74  KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
           +  F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN 
Sbjct: 8   QTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67
Query: 134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162
           F++     LVDLPGYG+A   EE+K  W+
Sbjct: 68  FEVADGKRLVDLPGYGYAEVPEEMKRKWQ 96

>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb From Burkholderia Thailandensis Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 74  KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
           +  FF         P    PEIAFAGRSN GKS+ +N L  Q  +   S  PG TQ IN+
Sbjct: 11  QARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY 70
Query: 134 FKLGTK----LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183
           F +G        LVDLPGYG+A      K  WE+L+S SY       C +I + 
Sbjct: 71  FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS-SYLQTRPQLCGMILMM 123

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 99  GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           G  NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 127 GIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb Length = 190

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA- 153
           I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D PG+GF    
Sbjct: 4   IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNH-KIIDXPGFGFXXGL 60
Query: 154 ----KEEVKDAWEELVSISYRNF 172
               +E +KD     +  + +N 
Sbjct: 61  PKEVQERIKDEIVHFIEDNAKNI 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	4e-42
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	1e-41
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	2e-40
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	1e-39
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	3e-27
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-12
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	8e-09
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	2e-08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	2e-08
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	1e-07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	1e-07
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-07
2wji_A	165	Ferrous iron transport protein B homolog; membrane	8e-07
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	1e-06
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	1e-06
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	2e-06
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	3e-06
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	1e-05
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	1e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	2e-05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	5e-04
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	2e-05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	2e-04
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	6e-05
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	1e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	4e-04
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	5e-04
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	6e-04

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195

 Score =  139 bits (352), Expect = 4e-42
 Identities = 43/94 (45%), Positives = 59/94 (62%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
            K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+N
Sbjct: 4   TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166
           F+ +  +L  VD+PGYGFA   +  ++AW  ++ 
Sbjct: 64  FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIE 97

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210

 Score =  138 bits (350), Expect = 1e-41
 Identities = 44/98 (44%), Positives = 56/98 (57%)

Query: 69  NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
           N+   +  F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG T
Sbjct: 3   NLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62

Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166
           Q IN F++     LVDLPGYG+A   EE+K  W+  + 
Sbjct: 63  QLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score =  134 bits (340), Expect = 2e-40
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
             +E    A+    +P P   E+AF GRSNVGKSS+LNAL  +  +   S  PG T++IN
Sbjct: 4   RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSIN 62

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166
           F+ + +K   VDLPGYG+A   ++ +  W+ LV 
Sbjct: 63  FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223

 Score =  133 bits (337), Expect = 1e-39
 Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
           ++  FF         P    PEIAFAGRSN GKS+ +N L  Q  +   S  PG TQ IN
Sbjct: 10  HQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN 69

Query: 133 FFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELV 165
           +F +G        LVDLPGYG+A      K  WE+L+
Sbjct: 70  YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score =  100 bits (252), Expect = 3e-27
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
           +  I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D+PG+GF 
Sbjct: 1   MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFM 57

Query: 152 YAKE-EVKDAWEELV 165
                EV++  ++ +
Sbjct: 58  MGLPKEVQERIKDEI 72

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 64.0 bits (155), Expect = 1e-12
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 64  ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWG---V 118
             IE  +    ++    + +S +    D  +  +A  G +  GKSS +N L         
Sbjct: 40  NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 98

Query: 119 VRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEE 156
              +    +T   + +K      +   DLPG G      +
Sbjct: 99  AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD 138

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 130 NVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
           N GKS+++N L  +        +PG+T+ I +F L   + ++D PG
Sbjct: 109 NTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 95  IAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
           +   G +NVGKS+ +N +          V+ TS  PG T  +    L  +  L D PG 
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 18/73 (24%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLP 146
           IA  G  N GK+S+ N +T   Q    W        PG+T  +     K    L + DLP
Sbjct: 6   IALIGNPNSGKTSLFNLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLP 57

Query: 147 G-YGF-AYAKEEV 157
           G Y    Y+ E  
Sbjct: 58  GIYSMSPYSPEAK 70

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
           +   G +NVGKS+ +N +  +      V+ TS  PG T  +    L +   L D PG   
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224

Query: 151 AYAKEEVKDAWEELVSIS 168
            +      DA  +L  I+
Sbjct: 225 HHQMAHFVDA-RDLKIIT 241

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPG 147
           I  AGR NVGKSS +NAL  Q  V   SD  G T     +++    +G  + LVD PG
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPG 92

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 45.9 bits (110), Expect = 8e-07
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           IA  G  NVGKS++ NALT        W        PG+T  +    F+  G K  +VDL
Sbjct: 6   IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 57

Query: 146 PG-YGF-AYAKEEV 157
           PG Y   A + +E+
Sbjct: 58  PGVYSLTANSIDEI 71

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           +A  G  NVGK+++ NALT  RQ    W        PG+T  +     +    +  +VDL
Sbjct: 6   VALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDL 57

Query: 146 PG-YGF-AYAKEEV 157
           PG Y   A++ +E+
Sbjct: 58  PGIYSLTAHSIDEL 71

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           IA  G  NVGKS++ NALT        W        PG+T  +    F+  G K  +VDL
Sbjct: 10  IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 61

Query: 146 PG-YGF-AYAKEEV 157
           PG Y   A + +E+
Sbjct: 62  PGVYSLTANSIDEI 75

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           +A AG  NVGK+S+ NALT  +Q    W        PG+T  +    F   G  + L+DL
Sbjct: 8   VALAGCPNVGKTSLFNALTGTKQYVANW--------PGVTVEKKEGVFTYKGYTINLIDL 59

Query: 146 PG-YGF-AYAKEEV 157
           PG Y     + +E 
Sbjct: 60  PGTYSLGYSSIDEK 73

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 22/86 (25%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
           I   G  N GK+++ N LT  RQ    W         G+T  +    F     ++ LVDL
Sbjct: 6   IGLIGNPNSGKTTLFNQLTGSRQRVGNW--------AGVTVERKEGQFSTTDHQVTLVDL 57

Query: 146 PG-YGF-AYAKEEVKDAWEELVSISY 169
           PG Y     + +   D   E ++  Y
Sbjct: 58  PGTYSLTTISSQTSLD---EQIACHY 80

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 23/78 (29%)

Query: 95  IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
               G  N GK+++ NALT   Q    W        PG+T  +    F L    + + DL
Sbjct: 4   ALLIGNPNCGKTTLFNALTNANQRVGNW--------PGVTVEKKTGEFLLGEHLIEITDL 55

Query: 146 PG------YGFAYAKEEV 157
           PG           +++E 
Sbjct: 56  PGVYSLVANAEGISQDEQ 73

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPG 147
           +   G+  VGKSS +N+L  +  VVR S                 G  + ++D PG
Sbjct: 39  VLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 88  PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
              ++ +    GR NVGKSS++NA+  +  V+  S+  G T+     +F     +  +VD
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVD 229

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLT 128
            P +A  GR NVGKS++ N +  +    R S   D PG+T
Sbjct: 3   KPVVAIVGRPNVGKSTIFNRIAGE----RISIVEDTPGVT 38

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 90  PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
            D  ++A  GR NVGKS++ NA+  +   +  S  PG T+       F  G K   VD
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVD 234

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLT 128
           +  +   GR NVGKS++ N L ++    + +   D+ G+T
Sbjct: 1   MATVLIVGRPNVGKSTLFNKLVKK----KKAIVEDEEGVT 36

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 7/40 (17%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLT 128
           + ++   GR NVGKSS+ N L ++    R++   D PG+T
Sbjct: 1   MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVT 36

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 60  SSERERIEENIFRNKLEFFAAAKV---SSSFPAPDLPE--IAFAGRSNVGKSSMLNALTR 114
           +S+++ + E    N        K+     +    D+    I   G+  VGKSS +N++  
Sbjct: 2   ASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61

Query: 115 QWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPG 147
           +  VV  S           ++  + G  L ++D PG
Sbjct: 62  E-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPG 96

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 95  IAFAGRSNVGKSSMLNALTRQ 115
           +  AGR N GKSS+LNAL  +
Sbjct: 7   VVIAGRPNAGKSSLLNALAGR 27

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
           +A  G+ NVGKS++LN L     V   S +P   QT
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGV-KVAPISPRP---QT 41

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
           +A  G+ NVGKS++LN L     V   S K     T
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGT-KVSIISPKA---GT 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.67
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.66
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.63
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.63
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.62
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.57
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.53
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.5
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.49
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.45
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.45
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.45
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.44
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.43
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.4
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.39
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.39
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.38
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.38
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.38
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.37
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.37
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.37
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.37
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.37
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.35
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.34
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.34
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.33
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.32
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.32
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.31
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.29
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.28
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.28
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.28
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.27
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.27
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.27
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.26
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.25
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.24
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.23
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.22
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.22
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.21
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.21
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.21
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.21
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.21
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.2
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.2
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.2
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.2
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.19
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.18
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.18
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.17
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.17
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.17
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.17
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.17
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.17
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.17
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.16
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.16
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.15
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.15
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.15
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.15
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.15
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.15
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.15
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.14
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.14
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.14
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.14
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.14
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.13
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.13
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.13
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.13
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.13
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.12
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.12
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.12
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.11
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.11
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.11
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.11
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.1
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.1
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.1
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.1
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.1
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.1
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.1
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.1
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.09
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.09
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.09
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.09
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.09
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.08
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.08
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.07
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.07
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.07
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.06
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.06
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.05
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.05
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.04
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.04
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.04
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.04
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.03
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.03
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.03
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.03
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.03
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.03
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.03
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.03
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.02
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.02
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.02
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.02
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.01
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.98
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.98
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.98
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.97
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.96
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.93
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.93
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.88
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.88
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.88
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.87
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.87
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.87
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.84
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.83
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.83
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.32
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.78
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.76
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.75
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.75
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.75
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.73
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.72
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.72
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.71
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.71
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.7
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.7
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.69
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.67
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.65
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.63
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.62
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.61
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.61
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.6
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.6
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.59
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.59
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.58
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.56
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.56
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.54
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.54
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.49
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.48
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.43
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.4
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.38
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.38
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.35
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.35
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.34
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	98.3
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.3
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.3
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.27
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.24
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.22
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.21
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.19
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.18
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.1
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.09
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.07
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.01
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.99
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.96
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.94
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.77
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.75
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.73
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.61
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.47
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.45
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.43
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.4
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.32
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.3
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.3
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.26
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.26
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.26
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.25
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.23
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.22
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.2
2xxa_A	433	Signal recognition particle protein; protein trans	97.17
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.13
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.11
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.1
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.08
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.03
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.03
1g6h_A	257	High-affinity branched-chain amino acid transport	97.01
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.99
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.99
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.99
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.99
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.99
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.99
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.98
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.98
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.97
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.97
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.97
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.97
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.96
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.94
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.93
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.93
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.92
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.9
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.9
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.89
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.87
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.85
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.84
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.83
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.81
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.8
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.8
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.79
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.79
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.78
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.77
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.77
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.75
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.72
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.71
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.71
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.7
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.69
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.69
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.68
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.65
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.64
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.63
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.62
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.62
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.6
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.59
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.57
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.56
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.56
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.55
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.55
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.54
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.52
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.51
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.51
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.5
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.48
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.45
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.45
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.43
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.42
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.42
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.41
2og2_A	359	Putative signal recognition particle receptor; nuc	96.4
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.4
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.39
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.38
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.37
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.36
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.32
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.32
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.31
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.29
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.26
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.24
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.23
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.21
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.2
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.19
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.18
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.16
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.14
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.13
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.12
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.11
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.11
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.11
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.1
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.09
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.07
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.07
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.04
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.04
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.03
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.02
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.02
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.01
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.0
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.98
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.96
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.93
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.91
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.89
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.88
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.87
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.86
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.85
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.84
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.8
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.8
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.8
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.79
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.77
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.74
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.74
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.73
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.73
1via_A	175	Shikimate kinase; structural genomics, transferase	95.71
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.7
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.7
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.7
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.69
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.69
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.67
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.62
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.61
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.61
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.61
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.6
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.57
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.56
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.56
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.53
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.51
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.51
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.51
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.47
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.44
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.43
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.42
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.41
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.4
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.4
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.4
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.38
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.38
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.37
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.35
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	95.31
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.28
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.27
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.26
3bos_A	242	Putative DNA replication factor; P-loop containing	95.25
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.25
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.24
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.23
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.22
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.18
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.16
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.13
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.1
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.99
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.98
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.98
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.96
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.95
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.92
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.89
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.88
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.86
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.86
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.86
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.79
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.78
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.78
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.77
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.75
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.73
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.71
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.7
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	94.66
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	94.65
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.63
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	94.6
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.56
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	94.56
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.55
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.53
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	94.49
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.47
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.46
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.46
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.45
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.44
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	94.37
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.33
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.31
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.3
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.28
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.26
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.24
1e69_A	322	Chromosome segregation SMC protein; structural mai	94.23
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.15
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.15
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.12
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.12
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	94.1
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.08
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.0
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	93.98
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	93.93
2qgz_A	308	Helicase loader, putative primosome component; str	93.91
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	93.91
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.9
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.9
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.89
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.88
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.84
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	93.81
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	93.77
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	93.74
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	93.72
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.72
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.7
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	93.58
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	93.54
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.48
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	93.46
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	93.43
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	93.3
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	93.27
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.22
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.21
3co5_A	143	Putative two-component system transcriptional RES	93.18
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.18
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	93.16
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.15
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	93.11
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	93.1
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.08
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	93.06
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.06
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	93.03

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.67  E-value=1.6e-17  Score=147.59  Aligned_cols=157  Identities=20%  Similarity=0.101  Sum_probs=78.0

Q ss_pred             cccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcccccCCCCCCCCeEEEEec
Q 029512           21 SILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGR  100 (192)
Q Consensus        21 ~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~  100 (192)
                      +.++.....|  |..++.+.. .+++.+|||+|+++.............+.................  ....+|+++|+
T Consensus       167 G~ls~~i~~l--r~~L~~~~a-~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~--r~~~kV~ivG~  241 (476)
T 3gee_A          167 GDLSVRLGGL--REQLIRSCA-LIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV--SEGVSTVIAGK  241 (476)
T ss_dssp             THHHHHHHHH--HTHHHHHHH-TTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEECC
T ss_pred             CcHHHHHHHH--HHHHHHHHH-HhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh--cCCCEEEEECC
Confidence            3344444555  667788777 799999999998887654432222222211111112111111111  12458999999


Q ss_pred             CCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEE
Q 029512          101 SNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTC  177 (192)
Q Consensus       101 ~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~  177 (192)
                      +|||||||+|+|++. ....+++.+|+|++....   ..+..+.+|||||+....  + ..+.+.--..+...+.+|+++
T Consensus       242 ~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~--~-~ve~~gi~~~~~~~~~aD~vl  317 (476)
T 3gee_A          242 PNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG--E-EIEHEGIRRSRMKMAEADLIL  317 (476)
T ss_dssp             TTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----------------------CCCSSCSEEE
T ss_pred             CCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch--h-HHHHHHHHHHHhhcccCCEEE
Confidence            999999999999997 457789999999987432   247889999999986521  1 111110001145678899999


Q ss_pred             EEEecCCce
Q 029512          178 FLIYIFYTN  186 (192)
Q Consensus       178 ~vvD~s~~~  186 (192)
                      +|+|++++.
T Consensus       318 ~VvD~s~~~  326 (476)
T 3gee_A          318 YLLDLGTER  326 (476)
T ss_dssp             EEEETTTCS
T ss_pred             EEEECCCCc
Confidence            999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.66  E-value=9.2e-17  Score=138.75  Aligned_cols=91  Identities=19%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             CCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCC-ChHHHHHHHHH
Q 029512           88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY-AKEEVKDAWEE  163 (192)
Q Consensus        88 ~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~-~~~~~~~~~~~  163 (192)
                      .+.+..+|+|||+||||||||+|+|++..  +.++++||+|+++....   .+.++.++||||+.... ......+   .
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~---~  142 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGK---Q  142 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHH---H
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHH---H
Confidence            44567799999999999999999999984  77899999999987543   47899999999997632 2222222   2


Q ss_pred             HHhhhccCceeEEEEEEecCCc
Q 029512          164 LVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       164 ~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      +  +...+.+|++++|+|+++|
T Consensus       143 ~--l~~i~~ad~il~vvD~~~p  162 (376)
T 4a9a_A          143 V--IAVARTCNLLFIILDVNKP  162 (376)
T ss_dssp             H--HHHHHHCSEEEEEEETTSH
T ss_pred             H--HHHHHhcCccccccccCcc
Confidence            2  4556779999999999986

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.63  E-value=9.7e-16  Score=118.38  Aligned_cols=101  Identities=42%  Similarity=0.730  Sum_probs=68.0

Q ss_pred             cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ...+....++|+++|.+|+|||||+|+|++..........+++|++...+..+..+.+|||||++...........+..+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHH
Confidence            33445567899999999999999999999874356677888999988877778899999999988754443333344444


Q ss_pred             Hh--hhccCceeEEEEEEecCCc
Q 029512          165 VS--ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~--l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..  +.....++++++|+|++++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~  118 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHA  118 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHhhhhcCCEEEEEEECCCC
Confidence            33  4556678999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.63  E-value=1.5e-15  Score=120.03  Aligned_cols=100  Identities=41%  Similarity=0.633  Sum_probs=76.9

Q ss_pred             CCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC----CeEEEEECCCCCCCCChHHHHHHH
Q 029512           86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAW  161 (192)
Q Consensus        86 ~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~----~~~~lvDtPG~~~~~~~~~~~~~~  161 (192)
                      ..+....++|+++|.+|+|||||+|+|++......++..+|+|++.......    ..+.||||||+..+.........|
T Consensus        23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW  102 (223)
T ss_dssp             GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence            3445567899999999999999999999984356788899999988766554    789999999987753333334445


Q ss_pred             HHHHh--hhccCceeEEEEEEecCCc
Q 029512          162 EELVS--ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       162 ~~~~~--l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..+..  +.....+|++++|+|++++
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~  128 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRP  128 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCC
Confidence            44444  5667779999999999763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.62  E-value=7e-15  Score=113.00  Aligned_cols=100  Identities=39%  Similarity=0.632  Sum_probs=78.8

Q ss_pred             cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ...+....++|+++|.+|+|||||+|+|++. .....++.+++|+.......+..+.+|||||+............+..+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHH
Confidence            3445566789999999999999999999998 466778888999998888788899999999987754444444445554


Q ss_pred             Hh--hhccCceeEEEEEEecCCc
Q 029512          165 VS--ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~--l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..  +.....++++++|+|++.+
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~  117 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIP  117 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHhcCcCceEEEEEecCCCC
Confidence            44  5566788999999998754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.57  E-value=2.2e-15  Score=129.67  Aligned_cols=161  Identities=19%  Similarity=0.166  Sum_probs=77.6

Q ss_pred             ccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhh--hhHHHHHhcc--cccCCCCC
Q 029512           15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAK--VSSSFPAP   90 (192)
Q Consensus        15 ~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~--~~~~~~~~~~--~~~~~~~~   90 (192)
                      ++|+..+++.|..+++ +  .+.++.+....+..+.|.|.   ....+++.+..++..  ..+......+  .+..+.+.
T Consensus       104 ~~q~~la~l~~~~~rl-~--~~~~l~~~~~~i~~~g~ge~---~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~  177 (364)
T 2qtf_A          104 KMQIELARLKYELPII-K--ETYTKSKIGEQQGPLGAGTY---GVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRN  177 (364)
T ss_dssp             HHHHHHHHHHHHHHHH-H--HC------------------------CHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             hHHHHHHHHhhhchhh-h--hhhHHHHhcCCCCcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            4566777788888888 2  23344443334444444442   111224444444422  2222222211  22223334


Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      +.+.|+++|++|+|||||+|+|++..  ..+++.+++|+++...   ..+..+.++||||+....+.+ ..+.+...  +
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~-lve~f~~t--l  252 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQ-IVDAFFVT--L  252 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGG-GHHHHHHH--H
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHH-HHHHHHHH--H
Confidence            56679999999999999999999974  4667788888765322   236789999999986543332 22223333  3


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      .....+|.+++|+|+++++
T Consensus       253 ~~~~~aD~il~VvD~s~~~  271 (364)
T 2qtf_A          253 SEAKYSDALILVIDSTFSE  271 (364)
T ss_dssp             HGGGGSSEEEEEEETTSCH
T ss_pred             HHHHhCCEEEEEEECCCCc
Confidence            4567789999999998764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.53  E-value=8e-16  Score=136.18  Aligned_cols=155  Identities=19%  Similarity=0.160  Sum_probs=87.1

Q ss_pred             CcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHH-HHHhcccccCCCCCCCCeEEEE
Q 029512           20 PSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLE-FFAAAKVSSSFPAPDLPEIAFA   98 (192)
Q Consensus        20 ~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~lv   98 (192)
                      .+.+......+  |..++++.. .+++.+|+++ +++.............+. ..+. ...........  ....+|+++
T Consensus       158 ~g~~~~~~~~~--r~~l~~~~a-~iEa~iDf~e-d~~~~~~~~~~~~i~~l~-~~l~~~~~~~~~~~~~--r~~~kV~iv  230 (462)
T 3geh_A          158 QGKLAHPIRQL--RANCLDILA-EIEARIDFEE-DLPPLDDEAIISDIENIA-AEISQLLATKDKGELL--RTGLKVAIV  230 (462)
T ss_dssp             HTTTHHHHHHH--HHHHHHHHH-HHHHHTTSSS-SSCCCCTTTHHHHHHHHH-HHHHHHTTTHHHHHHH--HHCEEEEEE
T ss_pred             chhHHHHHHHH--HHHHHHHHH-HHHhhccccc-cCChhhHHHHHHHHHHHH-HHHHHHHHHhhhhhhh--cCCCEEEEE
Confidence            34444555555  566777766 6899999998 565544332211111111 1111 11111110000  124589999


Q ss_pred             ecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeE
Q 029512           99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSC  175 (192)
Q Consensus        99 G~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~  175 (192)
                      |++|||||||+|+|++. ....+++.+++|++..   ....+..+.+|||||+.....   ..+.+.--..+...+.+|+
T Consensus       231 G~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~---~ve~~gi~~~~~~~~~aD~  306 (462)
T 3geh_A          231 GRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD---QVEKIGVERSRQAANTADL  306 (462)
T ss_dssp             ECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------CCCCSCSE
T ss_pred             cCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh---HHHHHHHHHHhhhhhcCCE
Confidence            99999999999999997 4567888899998763   333578899999999865211   1111100001456678999


Q ss_pred             EEEEEecCCc
Q 029512          176 TCFLIYIFYT  185 (192)
Q Consensus       176 v~~vvD~s~~  185 (192)
                      +++|+|++++
T Consensus       307 vl~VvD~s~~  316 (462)
T 3geh_A          307 VLLTIDAATG  316 (462)
T ss_dssp             EEEEEETTTC
T ss_pred             EEEEeccCCC
Confidence            9999999865

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.50  E-value=1.6e-15  Score=134.89  Aligned_cols=139  Identities=22%  Similarity=0.270  Sum_probs=86.1

Q ss_pred             CCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHh--hhhhHH-HHHhcccccCCCCCCCCeEEEEecCCCcHHHHH
Q 029512           33 RRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--FRNKLE-FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSML  109 (192)
Q Consensus        33 r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStli  109 (192)
                      |..++.+.. .++..+|+|+| ++....   + +...+  ....+. ...........  ....+|+++|+||||||||+
T Consensus       189 r~~l~~~~~-~ie~~idf~ee-i~~~~~---~-i~~~~~~l~~eL~~l~~~~~~~~~~--r~~~kV~ivG~pnvGKSSLl  260 (482)
T 1xzp_A          189 RRELIEVLA-EIRVELDYPDE-IETNTG---E-VVTRLERIKEKLTEELKKADAGILL--NRGLRMVIVGKPNVGKSTLL  260 (482)
T ss_dssp             HHHHHHHHH-HHHHHHHSTTT-CCCCHH---H-HHHHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEECCHHHHTCHHH
T ss_pred             HHHHHHHHH-HhhhcCCCCcc-ccchHH---H-HHHHHHHHHHHHHHHHHhhhhhhhc--cCCCEEEEECcCCCcHHHHH
Confidence            444555554 57778999987 664221   1 22222  111121 11111111111  12469999999999999999


Q ss_pred             HHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCC-CCCC---hHHHHHHHHHHHhhhccCceeEEEEEEec
Q 029512          110 NALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYA---KEEVKDAWEELVSISYRNFWSCTCFLIYI  182 (192)
Q Consensus       110 n~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~-~~~~---~~~~~~~~~~~~~l~~~~~~~~v~~vvD~  182 (192)
                      |+|++. ..+.+++.+|+|++..   ....+..+.+|||||+. ....   ...+...+.      ..+.+|++++|+|+
T Consensus       261 n~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~------~~~~aD~vl~VvD~  333 (482)
T 1xzp_A          261 NRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQ------EIEKADIVLFVLDA  333 (482)
T ss_dssp             HHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH------HHHHCSEEEEEEET
T ss_pred             HHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHH------HhhcccEEEEEecC
Confidence            999997 4577899999998763   22247889999999987 4321   111222322      23458999999999


Q ss_pred             CCce
Q 029512          183 FYTN  186 (192)
Q Consensus       183 s~~~  186 (192)
                      +.+.
T Consensus       334 s~~~  337 (482)
T 1xzp_A          334 SSPL  337 (482)
T ss_dssp             TSCC
T ss_pred             CCCC
Confidence            8763

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.49  E-value=1.2e-13  Score=113.29  Aligned_cols=88  Identities=23%  Similarity=0.234  Sum_probs=64.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCCh----HHHHHHHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK----EEVKDAWEELV  165 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~----~~~~~~~~~~~  165 (192)
                      ++|+++|.+|||||||+|+|+|..  ..+++.+|+|.+.....   .+..+.+|||||+......    .........++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            689999999999999999999974  77888999997765333   3678999999998653221    11111222222


Q ss_pred             hhhccCceeEEEEEEecCCc
Q 029512          166 SISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~  185 (192)
                         ....+|++++|+|++.+
T Consensus        80 ---~~~~~d~vi~VvDas~~   96 (256)
T 3iby_A           80 ---IDLEYDCIINVIDACHL   96 (256)
T ss_dssp             ---HHSCCSEEEEEEEGGGH
T ss_pred             ---hhCCCCEEEEEeeCCCc
Confidence               12568999999999864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.45  E-value=1.4e-13  Score=115.47  Aligned_cols=94  Identities=22%  Similarity=0.197  Sum_probs=67.5

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---e-CCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~-~~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ++...|+++|.+|||||||+|+|++. ....++..+++|++.....   . +..+.+|||||+..+.....+.+.+....
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            34458999999999999999999998 5677888999998754322   3 67899999999976442222222222211


Q ss_pred             hhhccCceeEEEEEEecCCc
Q 029512          166 SISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~  185 (192)
                       ....+.+|++++|+|++++
T Consensus        87 -~~~l~~aD~il~VvD~~~~  105 (308)
T 3iev_A           87 -KQSLEEADVILFMIDATEG  105 (308)
T ss_dssp             -HHHHHHCSEEEEEEETTTB
T ss_pred             -HHHhhcCCEEEEEEeCCCC
Confidence             2223468999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.45  E-value=3.6e-13  Score=112.84  Aligned_cols=89  Identities=21%  Similarity=0.219  Sum_probs=65.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..|+++|.+|||||||+|+|++. ..+.++..+++|++....   ..+.++.+|||||+..+..  .+.+.+.... ...
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~~~~~~~-~~~   83 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGEFMDQEV-YEA   83 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHHHHHHHH-HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHHHHHHHH-HHH
Confidence            47999999999999999999998 566778888888864322   2367899999999976432  2222222211 234


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      .+.+|++++|+|++++
T Consensus        84 l~~ad~il~VvD~~~~   99 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHP   99 (301)
T ss_dssp             TSSCSEEEEEEETTSC
T ss_pred             HhcCCEEEEEEECCCC
Confidence            5678999999999764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.45  E-value=2.2e-13  Score=112.49  Aligned_cols=89  Identities=19%  Similarity=0.103  Sum_probs=64.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCCh----HHHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK----EEVKDAWEEL  164 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~----~~~~~~~~~~  164 (192)
                      .++|+++|.+|+|||||+|+|++..  ..+++.+|+|.+.....   .+..+.+|||||+......    ......+..+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            3589999999999999999999984  68889999998865433   3678999999998653211    1111122222


Q ss_pred             HhhhccCceeEEEEEEecCCc
Q 029512          165 VSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s~~  185 (192)
                         ...+.+|++++|+|++..
T Consensus        81 ---~~~~~~d~ii~VvD~~~~   98 (274)
T 3i8s_A           81 ---ILSGDADLLINVVDASNL   98 (274)
T ss_dssp             ---HHHTCCSEEEEEEEGGGH
T ss_pred             ---HhhcCCCEEEEEecCCCh
Confidence               223578999999999764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.44  E-value=2e-13  Score=119.67  Aligned_cols=87  Identities=22%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCC---ChHHHHHHHHHHHh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY---AKEEVKDAWEELVS  166 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~---~~~~~~~~~~~~~~  166 (192)
                      ++|+++|.||||||||+|+|++. ..+.+++.+|+|++.....   .+..+.+|||||+....   -.+.....+     
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~-----   75 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVT-----   75 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHH-----
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHH-----
Confidence            68999999999999999999997 4567899999998864332   47789999999986421   112222222     


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                      ....+.+|++++|+|++..
T Consensus        76 ~~~~~~ad~il~V~D~~~~   94 (439)
T 1mky_A           76 LNMIREADLVLFVVDGKRG   94 (439)
T ss_dssp             HHHHTTCSEEEEEEETTTC
T ss_pred             HHHHHhCCEEEEEEECCCC
Confidence            2234678999999998753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.43  E-value=4.8e-13  Score=107.53  Aligned_cols=92  Identities=17%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC--CceeEEEEE---eeCCeEEEEECCCCCCCC-ChHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTINFF---KLGTKLCLVDLPGYGFAY-AKEEVKDAWEE  163 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~--g~T~~~~~~---~~~~~~~lvDtPG~~~~~-~~~~~~~~~~~  163 (192)
                      ...++|+|+|.+|+|||||+|+|++..  ...+..+  ++|.++...   ..+..+.||||||+.+.. ........+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRK--VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSC--CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCC--cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            456799999999999999999999974  2333333  566655432   246789999999998632 22333333332


Q ss_pred             HHhhhccCceeEEEEEEecCC
Q 029512          164 LVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       164 ~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .. ....+.++++++|+|++.
T Consensus       105 ~~-~~~~~~~~~~l~v~d~~~  124 (239)
T 3lxx_A          105 CI-LLTSPGPHALLLVVPLGR  124 (239)
T ss_dssp             HH-HHTTTCCSEEEEEEETTC
T ss_pred             HH-HhcCCCCcEEEEEeeCCC
Confidence            22 233467899999999854

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.40  E-value=1.7e-12  Score=99.20  Aligned_cols=91  Identities=26%  Similarity=0.220  Sum_probs=62.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|+|++. ....++..+++|++...   ...+..+.+|||||+......-.. ..+...  +.
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~--~~   79 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVER-IGIERA--WQ   79 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHH-HHHHHH--HH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHH-HHHHHH--HH
Confidence            458999999999999999999987 34456777888876432   223667999999998653221110 001111  22


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|++++.
T Consensus        80 ~~~~ad~~i~v~D~~~~~   97 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTD   97 (172)
T ss_dssp             HHHTCSEEEEEEETTTCC
T ss_pred             HHHhCCEEEEEEECCCCC
Confidence            345689999999998754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.39  E-value=5.2e-13  Score=111.01  Aligned_cols=61  Identities=33%  Similarity=0.610  Sum_probs=43.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~  152 (192)
                      ...+++++|.||||||||+|+|++. ..+.+++.+|+|++.+.+..+..+.++||||+..+.
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~  179 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK  179 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence            4569999999999999999999998 567899999999998887788899999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.39  E-value=1.8e-12  Score=106.16  Aligned_cols=88  Identities=25%  Similarity=0.263  Sum_probs=63.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCC--ChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY--AKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~--~~~~~~~~~~~~~~  166 (192)
                      .++|+++|.+|||||||+|+|++..  ..+++.+|+|.+.....   .+..+.+|||||.....  ..++  .....+. 
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e--~v~~~~~-   79 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDE--KIARDYL-   79 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHH--HHHHHHH-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHH--HHHHHHH-
Confidence            3589999999999999999999974  55788899998765433   26789999999986522  2221  1112221 


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                        ....+|++++|+|++..+
T Consensus        80 --~~~~~d~ii~V~D~t~~~   97 (258)
T 3a1s_A           80 --LKGDADLVILVADSVNPE   97 (258)
T ss_dssp             --HHSCCSEEEEEEETTSCH
T ss_pred             --hhcCCCEEEEEeCCCchh
Confidence              125689999999998753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.38  E-value=6.8e-13  Score=103.67  Aligned_cols=99  Identities=44%  Similarity=0.639  Sum_probs=58.3

Q ss_pred             CCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ++.....+|+++|++|+|||||+|+|++......+.+.+|+|+....+..+..+.++||||+............|...+.
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            33445679999999999999999999987424556778888877655444448899999998652111111122333222


Q ss_pred             --hhccCceeEEEEEEecCCc
Q 029512          167 --ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 --l~~~~~~~~v~~vvD~s~~  185 (192)
                        +.....++.+++++|++++
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~  121 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHP  121 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHhhhcccEEEEEEECCCC
Confidence              4455678999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.38  E-value=2.8e-12  Score=105.29  Aligned_cols=89  Identities=22%  Similarity=0.200  Sum_probs=64.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .++|+++|++|||||||+|+|++..  ..++..+|+|.+.....   .+..+.+|||||+............+..+.   
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---   77 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFI---   77 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHH---
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhh---
Confidence            4589999999999999999999974  47888899888765333   367899999999865222111111222222   


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ....+|++++|+|++..
T Consensus        78 ~~~~~d~vi~v~D~~~~   94 (271)
T 3k53_A           78 LDGNADVIVDIVDSTCL   94 (271)
T ss_dssp             HTTCCSEEEEEEEGGGH
T ss_pred             hccCCcEEEEEecCCcc
Confidence            24578999999998763

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.37  E-value=1.8e-12  Score=107.12  Aligned_cols=89  Identities=21%  Similarity=0.202  Sum_probs=63.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||+|+|++..  ..+++.+|+|.+......  +..+.+|||||...-............+..   
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~---   77 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLL---   77 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHH---
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHh---
Confidence            4589999999999999999999974  568888999987654433  578999999997652211111122223321   


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      ...+|++++|+|++..
T Consensus        78 ~~~~d~vi~V~D~t~~   93 (272)
T 3b1v_A           78 SQRADSILNVVDATNL   93 (272)
T ss_dssp             TTCCSEEEEEEEGGGH
T ss_pred             cCCCCEEEEEecCCch
Confidence            2468999999999764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.37  E-value=6.2e-13  Score=116.47  Aligned_cols=90  Identities=20%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .++|+++|.+|||||||+|+|++. ..+.+++.+|+|++......   +..+.+|||||+......  +...+.... ..
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~-~~   78 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQA-EI   78 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC---------C--HHHHHHHHH-HH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHH-HH
Confidence            368999999999999999999997 55778999999998766553   678999999998642211  111222111 12


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.+|++++|+|++..
T Consensus        79 ~~~~ad~il~vvD~~~~   95 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREG   95 (436)
T ss_dssp             HHHHCSEEEEEEETTTC
T ss_pred             HHHhCCEEEEEEeCCCC
Confidence            33568999999999764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.37  E-value=4.5e-13  Score=116.40  Aligned_cols=86  Identities=21%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe------------------------e---CCeEEEEEC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------L---GTKLCLVDL  145 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~------------------------~---~~~~~lvDt  145 (192)
                      .+|+++|.+|||||||+|+|++..  +.+++.|++|+++....                        .   ..++.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            379999999999999999999984  77889999998765331                        0   246999999


Q ss_pred             CCCCCCCC-hHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          146 PGYGFAYA-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       146 PG~~~~~~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ||+..... ...+.   ..+  +...+.+|++++|+|++.+
T Consensus        79 pG~~~~a~~~~~l~---~~~--l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEGRGLG---NKF--LDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C------------------C--CCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhhhhHH---HHH--HHHHhcCCEEEEEEecccc
Confidence            99864211 11111   111  4667899999999999875

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.37  E-value=1.2e-13  Score=118.75  Aligned_cols=91  Identities=22%  Similarity=0.253  Sum_probs=58.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE--ee-C-----------------CeEEEEECCCCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G-----------------TKLCLVDLPGYGFAY  152 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~--~~-~-----------------~~~~lvDtPG~~~~~  152 (192)
                      .+|+++|.||||||||+|+|++..  ..+++.|++|.++...  .. +                 ..+.+|||||+....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            589999999999999999999974  6788889999876421  11 2                 479999999987421


Q ss_pred             C-hHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEEE
Q 029512          153 A-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIIL  190 (192)
Q Consensus       153 ~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~~  190 (192)
                      . ...+...+     +.+.+.+|++++|+|+++...+++
T Consensus        81 ~~~~gl~~~f-----l~~ir~ad~il~VvD~~~~~~v~~  114 (363)
T 1jal_A           81 SKGEGLGNKF-----LANIRETDAIGHVVRCFENDDIVH  114 (363)
T ss_dssp             HHHGGGTCCH-----HHHHHTCSEEEEEEECSCC-----
T ss_pred             cccchHHHHH-----HHHHHhcCeEEEEEecCCCCceee
Confidence            1 01111111     334567899999999998655543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.37  E-value=8.4e-13  Score=116.24  Aligned_cols=88  Identities=22%  Similarity=0.309  Sum_probs=53.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCC--hHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA--KEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~--~~~~~~~~~~~~  165 (192)
                      ..++|+|+|.+|||||||+|+|++. ..+.+.+.+|+|++......   +..+.+|||||+.....  .+.....+..  
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~--   98 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI--   98 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh--
Confidence            4679999999999999999999998 56678899999998776553   67899999999874211  2222222222  


Q ss_pred             hhhccCceeEEEEEEecCC
Q 029512          166 SISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~  184 (192)
                         ..+.+|++++|+|++.
T Consensus        99 ---~~~~ad~il~VvD~~~  114 (456)
T 4dcu_A           99 ---AMDEADVIIFMVNGRE  114 (456)
T ss_dssp             ---HHHHCSEEEEEEESSS
T ss_pred             ---hHhhCCEEEEEEeCCC
Confidence               2345799999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.35  E-value=3.2e-12  Score=101.75  Aligned_cols=92  Identities=22%  Similarity=0.220  Sum_probs=58.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ...++|+++|.+|||||||+|+|++.. . .+...+++|++.....   .+..+.+|||||+......+.....+..+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRAN-V-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTC-E-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC-C-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            456799999999999999999999973 3 3567778888765443   3578999999998653211110001111111


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                      +  ....|++++|+|++++
T Consensus       105 ~--~~~~d~~i~v~d~~~~  121 (228)
T 2qu8_A          105 L--AHINGVILFIIDISEQ  121 (228)
T ss_dssp             H--HTSSEEEEEEEETTCT
T ss_pred             h--hccccEEEEEEecccc
Confidence            1  2456899999999875

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.34  E-value=3.7e-13  Score=116.88  Aligned_cols=92  Identities=24%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------------------CCeEEEEECCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF  150 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~lvDtPG~~~  150 (192)
                      ...+|+++|.||||||||+|+|++..  ..+++.|++|.+++....                    ...+.+|||||+..
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            45689999999999999999999974  478889999987653321                    23599999999875


Q ss_pred             CCC-hHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEE
Q 029512          151 AYA-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVII  189 (192)
Q Consensus       151 ~~~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~  189 (192)
                      ... .+.+.+.|     +...+.+|++++|+|+++.+.+.
T Consensus        99 ~as~~~glg~~~-----l~~ir~aD~Il~VvD~~~~~~i~  133 (396)
T 2ohf_A           99 GAHNGQGLGNAF-----LSHISACDGIFHLTRAFEDDDIT  133 (396)
T ss_dssp             --------CCHH-----HHHHHTSSSEEEEEEC-------
T ss_pred             ccchhhHHHHHH-----HHHHHhcCeEEEEEecCCCcchh
Confidence            221 22222223     34456789999999998766553

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.34  E-value=3.7e-12  Score=103.44  Aligned_cols=92  Identities=14%  Similarity=0.034  Sum_probs=61.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC-ceeEEEE---EeeCCeEEEEECCCCCCCC-ChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINF---FKLGTKLCLVDLPGYGFAY-AKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-~T~~~~~---~~~~~~~~lvDtPG~~~~~-~~~~~~~~~~~~~  165 (192)
                      ...+|+|+|.+|||||||+|+|++.. ....+..+. +|++...   ...+..+.||||||+.+.. ..+...+.+....
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~   99 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY   99 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999999873 233333343 5655432   2247789999999987632 2222222222111


Q ss_pred             hhhccCceeEEEEEEecCC
Q 029512          166 SISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~  184 (192)
                       ....+.+|++++|+|++.
T Consensus       100 -~~~~~~~d~il~V~d~~~  117 (260)
T 2xtp_A          100 -LLSAPGPHVLLLVTQLGR  117 (260)
T ss_dssp             -HHHTTCCSEEEEEEETTC
T ss_pred             -HhcCCCCcEEEEEEeCCC
Confidence             224567899999999874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.33  E-value=4.8e-12  Score=94.08  Aligned_cols=87  Identities=22%  Similarity=0.241  Sum_probs=54.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l~  168 (192)
                      ++|+++|.+|+|||||+|+|++. ....+...+++|.+.....   .+..+.+|||||...... .......+.     .
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~-----~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVD-----R   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHH-----H
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHH-----H
Confidence            58999999999999999999987 4445666777776654332   367899999999865221 122222222     2


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.+|++++++|++++
T Consensus        76 ~~~~~~~~i~v~d~~~~   92 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAE   92 (161)
T ss_dssp             HTTTCSEEEEEEESSSC
T ss_pred             HHHhCCEEEEEEECCCc
Confidence            34578999999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.32  E-value=3.2e-13  Score=118.30  Aligned_cols=94  Identities=21%  Similarity=0.216  Sum_probs=58.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..++|+++|.+|||||||+|+|++. ....+++.+|+|++..   +...+..+.||||||+..........+.+..+..+
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            4579999999999999999999997 4567889999999863   33347789999999986522110000111111112


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                      ...+.+|++++|+|++.+
T Consensus       253 ~~~~~ad~~llv~D~~~~  270 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEG  270 (436)
T ss_dssp             HHHHHCSEEEEEEETTTC
T ss_pred             HHHHhCCEEEEEEcCCcC
Confidence            334557999999999874

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.32  E-value=7e-13  Score=114.20  Aligned_cols=90  Identities=22%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe------------------------eCCeEEEEECCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------LGTKLCLVDLPGY  148 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~------------------------~~~~~~lvDtPG~  148 (192)
                      .+|+++|.||+|||||+|+|++..  ..+++.+++|.+++...                        .+..+.++||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            579999999999999999999973  56678888887654322                        2457999999998


Q ss_pred             CCCC-ChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEE
Q 029512          149 GFAY-AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVII  189 (192)
Q Consensus       149 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~  189 (192)
                      .... ..+.+.+.+     +...+.+|++++|+|++....++
T Consensus        80 ~~~a~~~~~lg~~f-----l~~ir~ad~ii~VvD~~~~~~~~  116 (368)
T 2dby_A           80 VKGAHKGEGLGNQF-----LAHIREVAAIAHVLRCFPDPDVV  116 (368)
T ss_dssp             CCCCCSSSCTTHHH-----HHHHHTCSEEEEEEECCCCH---
T ss_pred             cccccccchHHHHH-----HHHHHhCCEEEEEEECCCCCcee
Confidence            6522 122222222     23345789999999998765443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.31  E-value=8.9e-12  Score=95.22  Aligned_cols=89  Identities=30%  Similarity=0.487  Sum_probs=62.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh--hhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS--ISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~--l~~  169 (192)
                      ++|+++|.+|||||||+|+|++..  ..++..+++|.+....... .+.++||||+..... .......+..+..  +..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~   78 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED   78 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999874  4556677888776655555 899999999765321 1111222222222  333


Q ss_pred             -cCceeEEEEEEecCC
Q 029512          170 -RNFWSCTCFLIYIFY  184 (192)
Q Consensus       170 -~~~~~~v~~vvD~s~  184 (192)
                       ...+++++.++|.+.
T Consensus        79 ~~~~~~~v~~v~d~~s   94 (190)
T 2cxx_A           79 NAKNIDVAVLVVDGKA   94 (190)
T ss_dssp             HGGGCCEEEEEEETTH
T ss_pred             hhccCCEEEEEEcchh
Confidence             667789999999754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.29  E-value=6.8e-12  Score=102.89  Aligned_cols=88  Identities=18%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l  167 (192)
                      .++|+++|.+|+|||||+|+|++. ....+++.+++|.+....   ..+..+.+|||||+..... .....+.+..+   
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~---  114 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF---  114 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH---
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH---
Confidence            469999999999999999999997 455667777777654332   2467899999999865322 22222222222   


Q ss_pred             hccCceeEEEEEEecC
Q 029512          168 SYRNFWSCTCFLIYIF  183 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s  183 (192)
                      .....+|++++|+|..
T Consensus       115 ~~~~~~d~il~v~~~d  130 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLD  130 (270)
T ss_dssp             TTTCEECEEEEEEESS
T ss_pred             hhcCCCCEEEEEEeCC
Confidence            2245689999997764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.28  E-value=6.1e-12  Score=108.20  Aligned_cols=88  Identities=25%  Similarity=0.297  Sum_probs=60.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc-----CceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS  166 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~  166 (192)
                      .+++++|.||+|||||+|+|++..     ....++..+|+|++...+..+..+.++||||+..+.. .+.+..  ..+..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~--~~l~~  238 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGK--QSLKL  238 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCH--HHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhH--HHHHH
Confidence            589999999999999999999862     2456889999999998888777799999999986431 111111  11212


Q ss_pred             hhccCceeEEEEEEec
Q 029512          167 ISYRNFWSCTCFLIYI  182 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~  182 (192)
                      +...+.++.+++++|+
T Consensus       239 ~~~~~~i~~~~~~l~~  254 (368)
T 3h2y_A          239 ITPTKEIKPMVFQLNE  254 (368)
T ss_dssp             HSCSSCCCCEEEEECT
T ss_pred             hccccccCceEEEEcC
Confidence            3334567778888876

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.28  E-value=1.1e-11  Score=103.64  Aligned_cols=87  Identities=29%  Similarity=0.201  Sum_probs=62.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHh--h
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--I  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~--l  167 (192)
                      ..|+++|++|||||||+|+|++. ....+++.+++|++....   ..+..+.++||||+..    ......-..+..  .
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~----~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM----EEKRAINRLMNKAAS   83 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH----HHHHHHHHHHTCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc----cchhhHHHHHHHHHH
Confidence            48999999999999999999998 567778888888764322   2367899999999851    100111112222  3


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                      ...+.+|++++|+|++.
T Consensus        84 ~~l~~~D~vl~Vvd~~~  100 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR  100 (301)
T ss_dssp             SCCCCEEEEEEEEETTC
T ss_pred             HHHhcCCEEEEEEeCCC
Confidence            45678899999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.28  E-value=2.3e-11  Score=93.04  Aligned_cols=88  Identities=28%  Similarity=0.233  Sum_probs=60.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .++|+++|.+|||||||+|+|++..  ..++..+++|.+.....   .+..+.+|||||.............+..+..  
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--   82 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII--   82 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH--
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh--
Confidence            4689999999999999999999863  55667788877654322   3678999999997653221111112222221  


Q ss_pred             ccCceeEEEEEEecCC
Q 029512          169 YRNFWSCTCFLIYIFY  184 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~  184 (192)
                       ...++++++++|++.
T Consensus        83 -~~~~~~~i~v~d~~~   97 (188)
T 2wjg_A           83 -NEKPDLVVNIVDATA   97 (188)
T ss_dssp             -HHCCSEEEEEEEGGG
T ss_pred             -ccCCCEEEEEecchh
Confidence             134789999999864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.27  E-value=4.1e-12  Score=109.29  Aligned_cols=90  Identities=23%  Similarity=0.205  Sum_probs=65.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc----cCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~----~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~  166 (192)
                      ..+++++|.||+|||||+|+|++.    .....++..+|+|++...+..+..+.++||||+..... .+.+..  ..+..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~--~~l~~  239 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDA--RDLKI  239 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCT--TTHHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhH--HHHHH
Confidence            358999999999999999999986    12467889999999998888888899999999986432 111111  01111


Q ss_pred             hhccCceeEEEEEEecC
Q 029512          167 ISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s  183 (192)
                      +...+.++.+++++|+.
T Consensus       240 ~~~~~~i~~~~~~l~~~  256 (369)
T 3ec1_A          240 ITPKREIHPRVYQLNEG  256 (369)
T ss_dssp             HSCSSCCCCEEEEECTT
T ss_pred             HhcccccCceEEEEcCC
Confidence            22336678888888873

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.27  E-value=1.4e-11  Score=93.15  Aligned_cols=88  Identities=30%  Similarity=0.269  Sum_probs=54.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--E-eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~-~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|++|||||||+|+|++..  ..++..+++|.+...  . ..+..+.+|||||................+..   
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~---   78 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII---   78 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH---
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh---
Confidence            589999999999999999999863  345566776655322  2 23678999999997642211111111112211   


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      ...++++++++|++..
T Consensus        79 ~~~~~~~i~v~D~~~~   94 (165)
T 2wji_A           79 NEKPDLVVNIVDATAL   94 (165)
T ss_dssp             HHCCSEEEEEEETTCH
T ss_pred             cCCCCEEEEEecCCch
Confidence            1357899999998764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.27  E-value=1.3e-11  Score=100.77  Aligned_cols=89  Identities=19%  Similarity=0.167  Sum_probs=60.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCC-ChHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAY-AKEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~-~~~~~~~~~~~~~~l  167 (192)
                      ..+|+++|.+|+|||||+|+|++. ....++..+++|.....   ...+..+.||||||+.+.. ..+...+.+..+  +
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~--l  112 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF--L  112 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH--T
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH--H
Confidence            469999999999999999999997 44567777777765443   2347789999999986522 222222222222  2


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                       ....++++++|+|...
T Consensus       113 -~~~~~~~il~V~~~d~  128 (262)
T 3def_A          113 -VNRTIDVLLYVDRLDV  128 (262)
T ss_dssp             -TTCEECEEEEEEESSC
T ss_pred             -hcCCCCEEEEEEcCCC
Confidence             3457899999976543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.26  E-value=5.3e-11  Score=98.92  Aligned_cols=27  Identities=37%  Similarity=0.556  Sum_probs=24.6

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...++|+++|.+|+|||||+|+|+|..
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            457899999999999999999999973

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.25  E-value=3.9e-11  Score=98.83  Aligned_cols=28  Identities=39%  Similarity=0.554  Sum_probs=25.0

Q ss_pred             CCCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           89 APDLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        89 ~~~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ....++|+++|.+|||||||+|+|++..
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence            3467899999999999999999999973

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.24  E-value=3.8e-12  Score=112.05  Aligned_cols=94  Identities=21%  Similarity=0.229  Sum_probs=61.4

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ...++|+++|.+|+|||||+|+|++. ....+++.+|+|++.   .+...+..+.||||||+..........+.+..+..
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            45679999999999999999999987 457788999999875   34445778999999998753211000011222222


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                      +...+.+|++++|+|++.
T Consensus       272 ~~~~~~ad~~llviD~~~  289 (456)
T 4dcu_A          272 LKAIDRSEVVAVVLDGEE  289 (456)
T ss_dssp             HHHHHHCSEEEEEEETTT
T ss_pred             HHHHhhCCEEEEEEeCCC
Confidence            334456899999999976

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.23  E-value=2e-12  Score=112.16  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=65.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--e-C-----------------CeEEEEECCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGF  150 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~-~-----------------~~~~lvDtPG~~~  150 (192)
                      ....++|+|.+|||||||+|+|++. ..+.+++.|++|.++....  . +                 ..+.++|+||+..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4579999999999999999999997 4458899999998765332  1 2                 3589999999875


Q ss_pred             CCC-hHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          151 AYA-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       151 ~~~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..+ .+.+.+.|     +...+.+|.+++|+|++..
T Consensus        98 ~~s~~e~L~~~f-----l~~ir~~d~il~Vvd~~~d  128 (392)
T 1ni3_A           98 GASTGVGLGNAF-----LSHVRAVDAIYQVVRAFDD  128 (392)
T ss_dssp             CCCSSSSSCHHH-----HHHHTTCSEEEEEEECCCT
T ss_pred             CCcHHHHHHHHH-----HHHHHHHHHHHHHHhcccc
Confidence            322 23232233     2334568999999999763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.22  E-value=3.6e-11  Score=92.23  Aligned_cols=83  Identities=18%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|.+|||||||+|+|++. ......+..|.+.... ...+..+.+|||||...      ....+..+     .
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~-~~~~~~l~i~Dt~G~~~------~~~~~~~~-----~   81 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSV-QSQGFKLNVWDIGGQRK------IRPYWRSY-----F   81 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEE-EETTEEEEEEECSSCGG------GHHHHHHH-----H
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEE-EECCEEEEEEECCCCHH------HHHHHHHH-----h
Confidence            4579999999999999999999987 4455556666554322 22378899999999532      12233333     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|+|+++++
T Consensus        82 ~~~~~~i~v~d~~~~~   97 (181)
T 1fzq_A           82 ENTDILIYVIDSADRK   97 (181)
T ss_dssp             TTCSEEEEEEETTCGG
T ss_pred             CCCCEEEEEEECcCHH
Confidence            4689999999998753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.22  E-value=3.8e-11  Score=89.63  Aligned_cols=83  Identities=12%  Similarity=0.029  Sum_probs=54.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|+|||||+|+|++........+..+.+........   ...+.+|||||....      ...+..+     
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~-----   72 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF------ASLAPXY-----   72 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG------GGGHHHH-----
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh------hhhhhhh-----
Confidence            48999999999999999999987422223344454444443333   347999999995321      1122222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|++++.
T Consensus        73 ~~~~d~~i~v~d~~~~~   89 (170)
T 1ek0_A           73 YRNAQAALVVYDVTKPQ   89 (170)
T ss_dssp             HTTCSEEEEEEETTCHH
T ss_pred             hccCcEEEEEEecCChH
Confidence            24679999999988753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.21  E-value=3e-11  Score=90.32  Aligned_cols=83  Identities=11%  Similarity=0.017  Sum_probs=46.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||+|+|++. ........+++|........  ...+.+|||||....      ...+..     .
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~-----~   69 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG------RWLPGH-----C   69 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCccc------hhhhhh-----h
Confidence            468999999999999999999987 44566677787776444332  456889999995421      111211     1


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|+|.++++
T Consensus        70 ~~~~~~~i~v~d~~~~~   86 (166)
T 3q72_A           70 MAMGDAYVIVYSVTDKG   86 (166)
T ss_dssp             ---CCEEEEEEETTCHH
T ss_pred             hhhCCEEEEEEECCCHH
Confidence            24568888888887653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.21  E-value=3.4e-11  Score=90.03  Aligned_cols=84  Identities=14%  Similarity=0.063  Sum_probs=56.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++........+..|.+........   ...+.+|||||....      ...+..     
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~------~~~~~~-----   74 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF------RALAPM-----   74 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG------GGGTHH-----
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh------hcccHh-----
Confidence            358999999999999999999987422334455666655444333   367899999997321      111111     


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|++++.
T Consensus        75 ~~~~~~~~i~v~d~~~~~   92 (170)
T 1z0j_A           75 YYRGSAAAIIVYDITKEE   92 (170)
T ss_dssp             HHTTCSEEEEEEETTCHH
T ss_pred             hCcCCCEEEEEEECcCHH
Confidence            124578899999987653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.21  E-value=6e-12  Score=103.52  Aligned_cols=59  Identities=27%  Similarity=0.544  Sum_probs=43.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY  152 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~  152 (192)
                      .+++++|.+|+|||||+|+|++. ....+++.+|+|+..+....+..+.++||||+..+.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~  158 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN  158 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence            69999999999999999999997 456788899999988877778899999999998754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.21  E-value=3.6e-12  Score=108.71  Aligned_cols=86  Identities=20%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--e--CCeEEEEECCCCCC-CCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGF-AYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~lvDtPG~~~-~~~~~~~~~~~~~~~~  166 (192)
                      .+.|+|+|.+|||||||+|+|++..  ..+++.+++|.++....  .  +..+.++||||+.. ......+...   +  
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~---f--  230 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQ---F--  230 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHH---H--
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHH---H--
Confidence            3579999999999999999999874  45678888888765332  2  37899999999753 1111112122   2  


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                      +.+...++++++|+|++.
T Consensus       231 l~~i~~~d~ll~VvD~s~  248 (342)
T 1lnz_A          231 LRHIERTRVIVHVIDMSG  248 (342)
T ss_dssp             HHHHHHCCEEEEEEESSC
T ss_pred             HHHHHhccEEEEEEECCc
Confidence            344456899999999976

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.21  E-value=2.7e-11  Score=99.54  Aligned_cols=60  Identities=27%  Similarity=0.319  Sum_probs=38.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecC-------CCCceeEEEEEee---C--CeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL---G--TKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-------~~g~T~~~~~~~~---~--~~~~lvDtPG~~~~  151 (192)
                      ...+|+++|.+|+|||||+|+|++.. ......       .+.++.+......   +  ..+.+|||||+++.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~   78 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA   78 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence            34689999999999999999999874 222221       2223333322221   2  38999999999764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.20  E-value=5.3e-12  Score=110.58  Aligned_cols=93  Identities=24%  Similarity=0.282  Sum_probs=56.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChH-HHHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVS  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~-~~~~~~~~~~~  166 (192)
                      ..++|+++|++|||||||+|+|++. ....+++.+|+|++..   ....+..+.+|||||+....... .....+..+..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence            4579999999999999999999997 4577899999998864   33347789999999985321110 00000000000


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                      +...+.+|.+++++|++.
T Consensus       258 ~~~i~~ad~vllv~d~~~  275 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQ  275 (439)
T ss_dssp             HHHHHHCSEEEEEEETTT
T ss_pred             HHHHhhCCEEEEEEeCCC
Confidence            223345789999999875

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.20  E-value=9.1e-11  Score=100.09  Aligned_cols=90  Identities=23%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCCh--HHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK--EEVKDAWEEL  164 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~--~~~~~~~~~~  164 (192)
                      ...++|+++|++|||||||+|+|++..  ..++..+++|++.....   .+..+.++||||+......  ....  ...+
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~  240 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE--KQAI  240 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH--HHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH--HHHH
Confidence            456799999999999999999999974  55677788888766444   2567999999998653221  1111  1111


Q ss_pred             HhhhccCceeEEEEEEecCCc
Q 029512          165 VSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .  .....+|.+++|+|++.+
T Consensus       241 ~--~~~~~ad~illV~D~s~~  259 (357)
T 2e87_A          241 L--ALRYLGNLIIYIFDPSEH  259 (357)
T ss_dssp             H--GGGGTCSEEEEEECTTCT
T ss_pred             H--HHHhcCCEEEEEEeCCcc
Confidence            1  123457999999998765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.20  E-value=6.2e-11  Score=88.87  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=55.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|.+|+|||||+|+|++.. .....+..+.+.. .....+..+.+|||||....      ...+     ....
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~------~~~~-----~~~~   72 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVE-TVTYKNLKFQVWDLGGLTSI------RPYW-----RCYY   72 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEE-EEEETTEEEEEEEECCCGGG------GGGG-----GGGC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC-CCCcCCcCccceE-EEEECCEEEEEEECCCChhh------hHHH-----HHHh
Confidence            35699999999999999999999873 3333333343322 22223788999999996421      0111     1234


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|+|+++++
T Consensus        73 ~~~d~ii~v~d~~~~~   88 (171)
T 1upt_A           73 SNTDAVIYVVDSCDRD   88 (171)
T ss_dssp             TTCSEEEEEEETTCCT
T ss_pred             ccCCEEEEEEECCCHH
Confidence            5789999999998763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.20  E-value=6.5e-11  Score=89.22  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=55.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+........   ...+.+|||||...      ....+..+.   
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~~---   85 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER------FRAVTRSYY---   85 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG------TCHHHHHHH---
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH------hhhhHHHHh---
Confidence            469999999999999999999987422222333444444443333   34789999999432      112232222   


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                        +.+|++++|+|++++
T Consensus        86 --~~~d~~i~v~d~~~~  100 (179)
T 1z0f_A           86 --RGAAGALMVYDITRR  100 (179)
T ss_dssp             --HTCSEEEEEEETTCH
T ss_pred             --ccCCEEEEEEeCcCH
Confidence              357999999998765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.19  E-value=7.2e-11  Score=90.22  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=58.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|.+|+|||||+|+|++. .........|.+... ....+..+.+|||||......      .+     ....
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~-----~~~~   86 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMN-EVVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESLRS------SW-----NTYY   86 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTT-SCEEEECCSSSSCEE-EEETTEEEEEEEESSSGGGTC------GG-----GGGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC-CCCccCCcCceeeEE-EEECCEEEEEEECCCCHhHHH------HH-----HHHh
Confidence            4569999999999999999999987 445566666655432 223578899999999632110      11     1234


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                      +.+|++++|+|++++
T Consensus        87 ~~~d~ii~v~D~~~~  101 (181)
T 2h17_A           87 TNTEFVIVVVDSTDR  101 (181)
T ss_dssp             TTCCEEEEEEETTCT
T ss_pred             ccCCEEEEEEECCCH
Confidence            578999999998875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.18  E-value=5.9e-11  Score=91.40  Aligned_cols=84  Identities=15%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...++|+++|.+|||||||+|+|++.. ...+  .+..+.+.. .....+..+.+|||||....      ...+     -
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~------~~~~-----~   81 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQ-SSSKHITATVGYNVE-TFEKGRVAFTVFDMGGAKKF------RGLW-----E   81 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEEE-EEEETTEEEEEEEECCSGGG------GGGG-----G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCC-CcccccccccceeEE-EEEeCCEEEEEEECCCCHhH------HHHH-----H
Confidence            355699999999999999999999873 3333  444454333 22334778999999996321      1111     1


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      ...+.+|++++|+|+++++
T Consensus        82 ~~~~~~d~ii~v~D~~~~~  100 (199)
T 4bas_A           82 TYYDNIDAVIFVVDSSDHL  100 (199)
T ss_dssp             GGCTTCSEEEEEEETTCGG
T ss_pred             HHHhcCCEEEEEEECCcHH
Confidence            2346789999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.18  E-value=1.2e-10  Score=89.46  Aligned_cols=84  Identities=18%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHH-HHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVK-DAWEELVS  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~-~~~~~~~~  166 (192)
                      ...+|+++|.+|+|||||+|+|++...........+.+........   ...+.+|||||..      ... ..+..+  
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------~~~~~~~~~~--   90 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE------RFRKSMVQHY--   90 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH------HHHTTTHHHH--
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch------hhhhhhhHHH--
Confidence            3469999999999999999999986321222233333333333332   2479999999942      111 222222  


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                         .+.+|++++|+|++.+
T Consensus        91 ---~~~~d~iilv~D~~~~  106 (189)
T 1z06_A           91 ---YRNVHAVVFVYDMTNM  106 (189)
T ss_dssp             ---HTTCCEEEEEEETTCH
T ss_pred             ---hcCCCEEEEEEECcCH
Confidence               3468999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.17  E-value=8.3e-11  Score=89.36  Aligned_cols=84  Identities=21%  Similarity=0.017  Sum_probs=52.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..++|+++|.+|+|||||+|+|++........+..+.+........+  ..+.+|||||......      .+     ..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~-----~~   73 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI------FP-----QT   73 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC------CC-----GG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH------HH-----HH
Confidence            34699999999999999999999763222233333333322222223  4678999999653111      00     12


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.+|++++|+|.+++
T Consensus        74 ~~~~~~~~i~v~d~~~~   90 (181)
T 3t5g_A           74 YSIDINGYILVYSVTSI   90 (181)
T ss_dssp             GTTTCSEEEEEEETTCH
T ss_pred             HHhcCCEEEEEEECCCH
Confidence            23457888888888764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.17  E-value=7.7e-11  Score=88.64  Aligned_cols=85  Identities=18%  Similarity=0.047  Sum_probs=52.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .++|+++|.+|||||||+|+|++. ........+|+|........ +  ..+.+|||||.....        ...+. -.
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~-~~   73 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQ-ES   73 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHH-HH
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhH-Hh
Confidence            468999999999999999999987 44555566777655444333 2  368899999964310        00010 11


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.++++++|+|.++++
T Consensus        74 ~~~~~~~~i~v~d~~~~~   91 (175)
T 2nzj_A           74 CLQGGSAYVIVYSIADRG   91 (175)
T ss_dssp             TTTSCSEEEEEEETTCHH
T ss_pred             hcccCCEEEEEEECCCHH
Confidence            234678999999987653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.17  E-value=9.6e-11  Score=89.02  Aligned_cols=82  Identities=22%  Similarity=0.199  Sum_probs=55.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|.+|||||||+|+|++. ......+..+.+... ....+..+.+|||||......      .+     ....
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~-----~~~~   83 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVET-LSYKNLKLNVWDLGGQTSIRP------YW-----RCYY   83 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEEE-EEETTEEEEEEEEC----CCT------TG-----GGTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC-CcCccCCcCccceEE-EEECCEEEEEEECCCCHhHHH------HH-----HHHh
Confidence            4579999999999999999999976 345555665644332 222478899999999753111      11     1234


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                      +.+|++++|+|++++
T Consensus        84 ~~~d~ii~v~d~~~~   98 (183)
T 1moz_A           84 ADTAAVIFVVDSTDK   98 (183)
T ss_dssp             TTEEEEEEEEETTCT
T ss_pred             ccCCEEEEEEECCCH
Confidence            578999999998765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.17  E-value=7.5e-11  Score=91.17  Aligned_cols=85  Identities=15%  Similarity=0.103  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC---CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|+|||||+|+|++...........+.+........+   ..+.+|||||...      ....+..+.  
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~~~~~--   96 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER------FNSITSAYY--   96 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHHHHHH--
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH------HHHHHHHHh--
Confidence            34589999999999999999999873222222333333333333332   4789999999532      122233332  


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                         +.+|++++|+|+++++
T Consensus        97 ---~~~d~iilV~D~~~~~  112 (192)
T 2il1_A           97 ---RSAKGIILVYDITKKE  112 (192)
T ss_dssp             ---HHCSEEEEEEETTCHH
T ss_pred             ---cCCCEEEEEEECcCHH
Confidence               3579999999987753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.17  E-value=9.1e-11  Score=87.54  Aligned_cols=84  Identities=15%  Similarity=0.011  Sum_probs=55.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+........   +..+.+|||||....      ...+..+    
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~----   75 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY------HSLAPMY----   75 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG------GGGHHHH----
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh------hhhhHHh----
Confidence            358999999999999999999986322222344455544433332   457899999995321      1112222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|+++++
T Consensus        76 -~~~~d~~i~v~d~~~~~   92 (170)
T 1r2q_A           76 -YRGAQAAIVVYDITNEE   92 (170)
T ss_dssp             -HTTCSEEEEEEETTCHH
T ss_pred             -ccCCCEEEEEEECCCHH
Confidence             34678999999987653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.17  E-value=1.3e-10  Score=86.59  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=53.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .+|+++|.+|||||||+|++++.. .....++.+.... .....+..+.+|||||...      ....+..+     .+.
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~------~~~~~~~~-----~~~   67 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK------IRPLWRHY-----FQN   67 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC-SSCCCCCSSCCEE-EEECSSCEEEEEECCCCGG------GHHHHHHH-----TTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC-cCcccCcCceeEE-EEEECCEEEEEEEcCCChh------hHHHHHHH-----hcc
Confidence            379999999999999999999863 2222222232211 2222468899999999632      12222222     357


Q ss_pred             eeEEEEEEecCCce
Q 029512          173 WSCTCFLIYIFYTN  186 (192)
Q Consensus       173 ~~~v~~vvD~s~~~  186 (192)
                      +|++++|+|+++++
T Consensus        68 ~d~~i~v~d~~~~~   81 (164)
T 1r8s_A           68 TQGLIFVVDSNDRE   81 (164)
T ss_dssp             CSEEEEEEETTCGG
T ss_pred             CCEEEEEEECCCHH
Confidence            89999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.17  E-value=1.1e-10  Score=88.17  Aligned_cols=85  Identities=14%  Similarity=0.136  Sum_probs=53.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC---CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|+|||||+|+|++...........+.+........+   ..+.+|||||...      ....+     .
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~~-----~   74 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER------FRSLR-----T   74 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG------GHHHH-----G
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh------hhhhH-----H
Confidence            34699999999999999999999874222222333333322333332   4799999999421      11122     1


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      ...+.+|++++|+|+++++
T Consensus        75 ~~~~~~~~~i~v~d~~~~~   93 (177)
T 1wms_A           75 PFYRGSDCCLLTFSVDDSQ   93 (177)
T ss_dssp             GGGTTCSEEEEEEETTCHH
T ss_pred             HHHhcCCEEEEEEECcCHH
Confidence            2345678999999987653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.16  E-value=1.3e-10  Score=89.06  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=56.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|.+|||||||+|+|++.. .....++.+.+... ....+..+.+|||||.....      ..+..+     .
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~------~~~~~~-----~   81 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESLR------SSWNTY-----Y   81 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTS-CEEEECCSCSSCEE-EEETTEEEEEEECCC----C------GGGHHH-----H
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC-CCcCcCCCccceEE-EEECCEEEEEEECCCCHhHH------HHHHHH-----h
Confidence            35699999999999999999999763 33455555544332 22347889999999974311      112222     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|+|+++++
T Consensus        82 ~~~d~ii~v~d~~~~~   97 (187)
T 1zj6_A           82 TNTEFVIVVVDSTDRE   97 (187)
T ss_dssp             TTCCEEEEEEETTCTT
T ss_pred             cCCCEEEEEEeCCCHH
Confidence            4689999999998763

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.16  E-value=1.6e-10  Score=85.88  Aligned_cols=81  Identities=14%  Similarity=0.089  Sum_probs=50.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|+|||||+|+|++.. .  .....+++..   ......+  ..+.+|||||...      ....+..+. 
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~~~~~~-   73 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDE-F--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED------YAAIRDNYF-   73 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC-C--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---------CHHHHHHHH-
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc-c--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch------hHHHHHHHh-
Confidence            3589999999999999999999873 2  2222232222   1222222  4789999999532      112233332 


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                          +.+|.+++|+|+++++
T Consensus        74 ----~~~d~~i~v~d~~~~~   89 (168)
T 1u8z_A           74 ----RSGEGFLCVFSITEME   89 (168)
T ss_dssp             ----HHCSEEEEEEETTCHH
T ss_pred             ----hcCCEEEEEEECCCHH
Confidence                3578999999988653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.15  E-value=1.2e-10  Score=88.99  Aligned_cols=83  Identities=18%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|.+|||||||+|++++.. .....++.+.+.. .....+..+.+|||||...      ....+     ....
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~------~~~~~-----~~~~   83 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK-TLEHRGFKLNIWDVGGQKS------LRSYW-----RNYF   83 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE-EEEETTEEEEEEEECCSHH------HHTTG-----GGGC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE-EEEECCEEEEEEECCCCHh------HHHHH-----HHHh
Confidence            45799999999999999999999873 3333344443332 2222478899999999621      11111     2335


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|+|+++++
T Consensus        84 ~~~d~ii~v~d~~~~~   99 (186)
T 1ksh_A           84 ESTDGLIWVVDSADRQ   99 (186)
T ss_dssp             TTCSEEEEEEETTCGG
T ss_pred             cCCCEEEEEEECcCHH
Confidence            6789999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.15  E-value=7e-11  Score=91.23  Aligned_cols=84  Identities=14%  Similarity=0.037  Sum_probs=58.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++........+..|.|........   ...+.+|||||....      ...+..+    
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~----   92 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF------HSLAPMY----   92 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG------GGGTHHH----
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh------HhhhHHh----
Confidence            469999999999999999999987422345566677665554443   357999999995321      1112222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|+++++
T Consensus        93 -~~~~d~iilV~d~~~~~  109 (192)
T 2fg5_A           93 -YRGSAAAVIVYDITKQD  109 (192)
T ss_dssp             -HTTCSEEEEEEETTCTH
T ss_pred             -hccCCEEEEEEeCCCHH
Confidence             24678999999987764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.15  E-value=1.3e-10  Score=89.07  Aligned_cols=26  Identities=35%  Similarity=0.409  Sum_probs=23.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...+|+++|.+|+|||||+|+|++..
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCc
Confidence            35699999999999999999999873

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.15  E-value=1.8e-10  Score=88.58  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||+|+|++........+..+.+.. .....+..+.+|||||..      .....+..+     .+
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~------~~~~~~~~~-----~~   89 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQP------RFRSMWERY-----CR   89 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSH------HHHTTHHHH-----HT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCH------hHHHHHHHH-----Hc
Confidence            468999999999999999999986321122233333322 222347789999999942      222223222     25


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|+++++
T Consensus        90 ~~d~ii~v~D~~~~~  104 (188)
T 1zd9_A           90 GVSAIVYMVDAADQE  104 (188)
T ss_dssp             TCSEEEEEEETTCGG
T ss_pred             cCCEEEEEEECCCHH
Confidence            689999999997754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.15  E-value=1.3e-10  Score=89.48  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=54.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+.......   .+..+.+|||||......      .+..+    
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~----   94 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA------ITSAY----   94 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT------THHHH----
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh------hhHHH----
Confidence            46999999999999999999998732111223334433333222   246789999999754211      12222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|++.+.
T Consensus        95 -~~~~d~vi~v~D~~~~~  111 (193)
T 2oil_A           95 -YRGAVGALLVFDLTKHQ  111 (193)
T ss_dssp             -HTTCCEEEEEEETTCHH
T ss_pred             -hccCCEEEEEEECCCHH
Confidence             24678999999987653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.15  E-value=4.1e-11  Score=90.55  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=55.7

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ...++|+++|.+|||||||+|+|++..  ......+++|.+..   ....+..+.+|||||.......      +     
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~-----   72 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM------R-----   72 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS------C-----
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH------H-----
Confidence            356799999999999999999999863  22333444443322   2234678999999996431110      0     


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                      ......+|++++|+|+++
T Consensus        73 ~~~~~~~d~~i~v~d~~~   90 (178)
T 2lkc_A           73 ARGAQVTDIVILVVAADD   90 (178)
T ss_dssp             CSSCCCCCEEEEEEETTC
T ss_pred             HHHHhhCCEEEEEEECCC
Confidence            233467889999999876

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.15  E-value=1.4e-10  Score=98.71  Aligned_cols=26  Identities=42%  Similarity=0.630  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..++|+++|.+|||||||+|+|+|..
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999999973

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.14  E-value=1.5e-10  Score=86.02  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=50.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|+|||||+|+|++... .  .....++.+  ...... +  ..+.+|||||....   .   ..+..+.  
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~---~~~~~~~--   72 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTF-I--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF---A---SMRDLYI--   72 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC-C--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---H---HHHHHHH--
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC-c--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh---H---HHHHHHh--
Confidence            5899999999999999999998632 2  222222221  122222 2  44899999995431   1   1222222  


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                         +.++.+++|+|+++++
T Consensus        73 ---~~~~~~i~v~d~~~~~   88 (167)
T 1kao_A           73 ---KNGQGFILVYSLVNQQ   88 (167)
T ss_dssp             ---HHCSEEEEEEETTCHH
T ss_pred             ---ccCCEEEEEEeCCCHH
Confidence               3468899999987653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.14  E-value=2.2e-10  Score=88.61  Aligned_cols=82  Identities=21%  Similarity=0.194  Sum_probs=56.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||+|++++. ......+..+.+.. .....+..+.++||||......      .+     ....+
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~~~~   89 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQARR------LW-----KDYFP   89 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS-CCCCCCCCCSCEEE-EEEETTEEEEEEECCCSGGGTT------SG-----GGGCT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC-CCCccccCCCCCeE-EEEECCEEEEEEECCCCHHHHH------HH-----HHHHh
Confidence            459999999999999999999987 34444445555432 2333468899999999643110      11     12235


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|+++++
T Consensus        90 ~~d~~i~v~d~~~~~  104 (190)
T 1m2o_B           90 EVNGIVFLVDAADPE  104 (190)
T ss_dssp             TCCEEEEEEETTCGG
T ss_pred             cCCEEEEEEECCChH
Confidence            789999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.14  E-value=1.3e-10  Score=89.08  Aligned_cols=83  Identities=19%  Similarity=0.185  Sum_probs=56.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      ...+|+++|.+|||||||+|+|++. ......++.+.+.. .....+..+.+|||||.......      +     ....
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~------~-----~~~~   87 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLG-DVVTTVPTVGVNLE-TLQYKNISFEVWDLGGQTGVRPY------W-----RCYF   87 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS-CCEEECSSTTCCEE-EEEETTEEEEEEEECCSSSSCCC------C-----SSSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC-CCCCcCCCCceEEE-EEEECCEEEEEEECCCCHhHHHH------H-----HHHh
Confidence            3569999999999999999999876 33444444443333 22224778999999996431110      0     1234


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|+|+++++
T Consensus        88 ~~~d~ii~v~d~~~~~  103 (189)
T 2x77_A           88 SDTDAVIYVVDSTDRD  103 (189)
T ss_dssp             TTCCEEEEEEETTCCT
T ss_pred             hcCCEEEEEEeCCCHH
Confidence            5789999999998763

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.14  E-value=3.2e-10  Score=87.04  Aligned_cols=83  Identities=17%  Similarity=0.057  Sum_probs=55.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+........   ...+.+|||||.......      +     ..
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~-----~~   90 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI------T-----TA   90 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS------G-----GG
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh------H-----HH
Confidence            469999999999999999999987421222334455544333332   357899999996431110      1     22


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.+|++++|+|++++
T Consensus        91 ~~~~~d~ii~v~d~~~~  107 (189)
T 2gf9_A           91 YYRGAMGFLLMYDIANQ  107 (189)
T ss_dssp             GGTTCSEEEEEEETTCH
T ss_pred             hccCCCEEEEEEECCCH
Confidence            34567899999998765

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.14  E-value=1.1e-10  Score=88.04  Aligned_cols=83  Identities=19%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ..++|+++|.+|+|||||+|+|++..  ......+..|.+..  .... +  ..+.+|||||......      .+    
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~----   75 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNT--FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT------IT----   75 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS------CC----
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC--CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh------hH----
Confidence            45699999999999999999999874  22344444444432  2222 3  5789999999432110      01    


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                       ....+.+|++++|+|+++++
T Consensus        76 -~~~~~~~d~~i~v~d~~~~~   95 (181)
T 3tw8_B           76 -STYYRGTHGVIVVYDVTSAE   95 (181)
T ss_dssp             -GGGGTTCSEEEEEEETTCHH
T ss_pred             -HHHhccCCEEEEEEECCCHH
Confidence             12245678899999987653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.13  E-value=1.6e-10  Score=87.93  Aligned_cols=82  Identities=17%  Similarity=0.205  Sum_probs=53.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEeeC---CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|+|||||+|+|++.. . .....+..+.+.  .....+   ..+.+|||||...      ....+     
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~-----   76 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKK-F-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER------FRSVT-----   76 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS-C-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHH-----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH------HHHHH-----
Confidence            4699999999999999999999873 2 222233333332  222222   4789999999432      11122     


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ....+.+|++++|+|+++++
T Consensus        77 ~~~~~~~d~~i~v~d~~~~~   96 (186)
T 2bme_A           77 RSYYRGAAGALLVYDITSRE   96 (186)
T ss_dssp             HTTSTTCSEEEEEEETTCHH
T ss_pred             HHHHhcCCEEEEEEECcCHH
Confidence            22346789999999987753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=89.49  Aligned_cols=82  Identities=18%  Similarity=0.096  Sum_probs=53.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|+|||||+|+|++..  ......+..+.+.  ..... +  ..+.+|||||.....      ..+..+  
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~--   85 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR------TITSSY--   85 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC------TTHHHH--
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh------hhHHHH--
Confidence            4699999999999999999999874  2223334444333  33332 2  468999999953211      112222  


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                         .+.+|++++|+|+++++
T Consensus        86 ---~~~~d~~i~v~d~~~~~  102 (196)
T 3tkl_A           86 ---YRGAHGIIVVYDVTDQE  102 (196)
T ss_dssp             ---HTTCSEEEEEEETTCHH
T ss_pred             ---HhhCCEEEEEEECcCHH
Confidence               24679999999988753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=90.32  Aligned_cols=84  Identities=21%  Similarity=0.122  Sum_probs=51.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|||||||+|+|++...........+.+........   ...+.+|||||....      ...+..+   
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~---   97 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF------RSIAKSY---   97 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC------HHHHHHH---
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch------hhhHHHH---
Confidence            4579999999999999999999987422333444454444333332   356899999995421      1223222   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.+|++++|+|++++
T Consensus        98 --~~~~d~iilv~d~~~~  113 (199)
T 2p5s_A           98 --FRKADGVLLLYDVTCE  113 (199)
T ss_dssp             --HHHCSEEEEEEETTCH
T ss_pred             --HhhCCEEEEEEECCCh
Confidence              2357899999998765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=90.08  Aligned_cols=82  Identities=15%  Similarity=0.069  Sum_probs=53.1

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ...++|+++|.+|+|||||+|+|++..   ......+++....  .... +  ..+.+|||||....      ...+..+
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~   82 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY------AAIRDNY   82 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC------HHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh------HHHHHHH
Confidence            345799999999999999999999873   2333333333221  2222 2  37899999996431      1122222


Q ss_pred             HhhhccCceeEEEEEEecCCc
Q 029512          165 VSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .     +.+|++++|+|++.+
T Consensus        83 ~-----~~~~~~i~v~d~~~~   98 (206)
T 2bov_A           83 F-----RSGEGFLCVFSITEM   98 (206)
T ss_dssp             H-----HHCSEEEEEEETTCH
T ss_pred             H-----hhCCEEEEEEECCCH
Confidence            2     246889999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.13  E-value=1.6e-10  Score=86.98  Aligned_cols=81  Identities=16%  Similarity=0.134  Sum_probs=52.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|+|||||+|+|++.. . .....+..+.+..  .... +  ..+.+|||||....      ...+..+  
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~------~~~~~~~--   83 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDS-F-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------RSLIPSY--   83 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC-C-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG------GGGSHHH--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH------HHHHHHH--
Confidence            3689999999999999999999863 2 2222333333332  2222 2  47999999995321      1112222  


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                         .+.+|++++|+|++++
T Consensus        84 ---~~~~d~~i~v~d~~~~   99 (179)
T 2y8e_A           84 ---IRDSTVAVVVYDITNT   99 (179)
T ss_dssp             ---HHTCSEEEEEEETTCH
T ss_pred             ---hcCCCEEEEEEECCCH
Confidence               2357899999998765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.12  E-value=3e-10  Score=84.94  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=51.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+........ +  ..+.+|||||....      ...+     ..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~-----~~   74 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF------HALG-----PI   74 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------CC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh------hhhH-----HH
Confidence            458999999999999999999987311111222232222222322 2  36889999994321      1111     12


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|.+++|+|+++++
T Consensus        75 ~~~~~d~~i~v~d~~~~~   92 (170)
T 1z08_A           75 YYRDSNGAILVYDITDED   92 (170)
T ss_dssp             SSTTCSEEEEEEETTCHH
T ss_pred             HhccCCEEEEEEECcCHH
Confidence            345779999999987753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.12  E-value=8.9e-11  Score=88.70  Aligned_cols=85  Identities=12%  Similarity=0.144  Sum_probs=50.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ...+|+++|.+|+|||||+|+|++...........+.+........    ...+.+|||||...      ....+     
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~-----   75 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER------FQSLG-----   75 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH------hhhhh-----
Confidence            4569999999999999999999987321111222232222222222    24789999999421      11111     


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ....+.+|++++|+|+++++
T Consensus        76 ~~~~~~~d~~i~v~d~~~~~   95 (182)
T 1ky3_A           76 VAFYRGADCCVLVYDVTNAS   95 (182)
T ss_dssp             -CCSTTCCEEEEEEETTCHH
T ss_pred             HHHhhcCCEEEEEEECCChH
Confidence            22346789999999987653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.12  E-value=2.2e-10  Score=88.80  Aligned_cols=84  Identities=18%  Similarity=0.097  Sum_probs=55.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|+|++...........+.+........   ...+.+|||||...      ....+     ..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~-----~~   76 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER------YRTIT-----TA   76 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHH-----HT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh------hcchH-----HH
Confidence            468999999999999999999987422222333454444333332   35789999999632      11122     12


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|+++++
T Consensus        77 ~~~~~d~ii~v~d~~~~~   94 (203)
T 1zbd_A           77 YYRGAMGFILMYDITNEE   94 (203)
T ss_dssp             TGGGCSEEEEEEETTCHH
T ss_pred             hhcCCCEEEEEEECcCHH
Confidence            345689999999987653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.12  E-value=1.7e-10  Score=87.34  Aligned_cols=84  Identities=12%  Similarity=0.031  Sum_probs=53.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+........   ...+.+|||||....      ...+..+    
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~----   81 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY------HSLAPMY----   81 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG------GGGTHHH----
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh------hhhhHHH----
Confidence            468999999999999999999987421111223343333333322   357999999995321      1112222    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|++++.
T Consensus        82 -~~~~d~~i~v~d~~~~~   98 (181)
T 2efe_B           82 -YRGAAAAIIVFDVTNQA   98 (181)
T ss_dssp             -HTTCSEEEEEEETTCHH
T ss_pred             -hccCCEEEEEEECCCHH
Confidence             24678999999987653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.11  E-value=8.4e-11  Score=98.40  Aligned_cols=87  Identities=17%  Similarity=0.112  Sum_probs=60.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHH-HHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAW-EELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~-~~~~~  166 (192)
                      ..+|+++|.+|||||||+|++++. ....++..+++|.+.....    .+..+.+|||||..      .....+ ..+. 
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~------~~~~~~~~~~~-   74 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD------VFMENYFTKQK-   74 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH------HHHHHHHTTTH-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH------HHhhhhhhhHH-
Confidence            358999999999999999999986 3345566778887766543    24689999999952      111100 0000 


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      -...+.+|++++|+|++++.
T Consensus        75 ~~~~~~ad~vi~V~D~t~~~   94 (307)
T 3r7w_A           75 DHIFQMVQVLIHVFDVESTE   94 (307)
T ss_dssp             HHHHTTCSEEEEEEETTCSC
T ss_pred             HHHhccCCEEEEEEECCChh
Confidence            11225789999999998764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.11  E-value=2.2e-10  Score=89.22  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=52.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||+|+|++. ......+..+.+.. .....+..+.+|||||......      .+     -...+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~------~~-----~~~~~   91 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQARR------VW-----KNYLP   91 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC----CC------GG-----GGGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC-CCCccCCCCCceeE-EEEECCEEEEEEECCCcHhhHH------HH-----HHHHh
Confidence            458999999999999999999986 33444444455433 2223467899999999543111      11     12234


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .+|++++|+|+++++
T Consensus        92 ~~d~~i~v~D~~~~~  106 (198)
T 1f6b_A           92 AINGIVFLVDCADHE  106 (198)
T ss_dssp             GCSEEEEEEETTCGG
T ss_pred             cCCEEEEEEECCCHH
Confidence            679999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.11  E-value=2.5e-10  Score=87.38  Aligned_cols=83  Identities=18%  Similarity=0.083  Sum_probs=54.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|+|++...........+.+........   ...+.+|||||......      .+..+    
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~----   84 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT------LTPSY----   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC------SHHHH----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh------hhHHH----
Confidence            469999999999999999999987422222333444444333332   35799999999542111      12222    


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                       .+.+|++++|+|++++
T Consensus        85 -~~~~d~ii~v~d~~~~  100 (195)
T 1x3s_A           85 -YRGAQGVILVYDVTRR  100 (195)
T ss_dssp             -HTTCCEEEEEEETTCH
T ss_pred             -hccCCEEEEEEECcCH
Confidence             2467899999998765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.11  E-value=2.4e-10  Score=86.26  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=52.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ...++|+++|.+|+|||||+|+|++..   ......+++....  .... +  ..+.+|||||......      .+..+
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~   77 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA------MREQY   77 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC------CHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH------HHHHH
Confidence            345699999999999999999999873   2333444433321  1222 2  4688999999653211      11122


Q ss_pred             HhhhccCceeEEEEEEecCCc
Q 029512          165 VSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .     +.+|++++|+|++++
T Consensus        78 ~-----~~~d~~i~v~d~~~~   93 (181)
T 2fn4_A           78 M-----RAGHGFLLVFAINDR   93 (181)
T ss_dssp             H-----HHCSEEEEEEETTCH
T ss_pred             H-----hhCCEEEEEEeCCCH
Confidence            1     246888999998765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.11  E-value=3.2e-10  Score=88.15  Aligned_cols=84  Identities=21%  Similarity=0.143  Sum_probs=53.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+........ +  ..+.+|||||......      .+     ..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~-----~~   76 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT------IT-----SS   76 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC------CC-----GG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH------HH-----HH
Confidence            469999999999999999999987411111122233332223332 2  4799999999543111      01     12


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|+++++
T Consensus        77 ~~~~~d~vilv~d~~~~~   94 (206)
T 2bcg_Y           77 YYRGSHGIIIVYDVTDQE   94 (206)
T ss_dssp             GGTTCSEEEEEEETTCHH
T ss_pred             hccCCCEEEEEEECcCHH
Confidence            345678999999987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.11  E-value=1.9e-10  Score=85.94  Aligned_cols=80  Identities=20%  Similarity=0.122  Sum_probs=49.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|+|||||+|+|++.. . .....+..+.+.  ..... +  ..+.+|||||......      .+..    
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~----   71 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDK-F-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT------ITTA----   71 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC-C-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC------CCHH----
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC-C-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh------hHHH----
Confidence            589999999999999999999873 2 222223333222  22222 2  3689999999532111      1111    


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                       ..+.+|++++|+|++++
T Consensus        72 -~~~~~d~~i~v~d~~~~   88 (170)
T 1g16_A           72 -YYRGAMGIILVYDITDE   88 (170)
T ss_dssp             -HHTTEEEEEEEEETTCH
T ss_pred             -HhccCCEEEEEEECCCH
Confidence             22468999999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.10  E-value=1.9e-10  Score=88.33  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=53.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc-CceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~-~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ...+|+++|.+|||||||+|+|++.. .........+.+.. .....+..+.+|||||.....      ..+     ...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~------~~~-----~~~   87 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE-KFKSSSLSFTVFDMSGQGRYR------NLW-----EHY   87 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE-EEECSSCEEEEEEECCSTTTG------GGG-----GGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE-EEEECCEEEEEEECCCCHHHH------HHH-----HHH
Confidence            45699999999999999999999873 12222233332222 122236889999999954311      111     122


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      .+.+|++++|+|++++
T Consensus        88 ~~~~d~ii~v~d~~~~  103 (190)
T 2h57_A           88 YKEGQAIIFVIDSSDR  103 (190)
T ss_dssp             GGGCSEEEEEEETTCH
T ss_pred             HhcCCEEEEEEECCCH
Confidence            3567999999998765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.10  E-value=2.4e-10  Score=85.25  Aligned_cols=84  Identities=15%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+........   ...+.+|||||......      .+..+    
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~----   74 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA------ITKAY----   74 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC------CCHHH----
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH------HHHHH----
Confidence            468999999999999999999986321111222232222222222   34799999999432110      11111    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|+++++
T Consensus        75 -~~~~d~~i~v~d~~~~~   91 (168)
T 1z2a_A           75 -YRGAQACVLVFSTTDRE   91 (168)
T ss_dssp             -HTTCCEEEEEEETTCHH
T ss_pred             -hcCCCEEEEEEECcCHH
Confidence             24678999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.10  E-value=3.8e-10  Score=85.96  Aligned_cols=84  Identities=18%  Similarity=0.062  Sum_probs=53.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE-EEEEe-e-----------CCeEEEEECCCCCCCCChHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK-L-----------GTKLCLVDLPGYGFAYAKEEVK  158 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~-~~~~~-~-----------~~~~~lvDtPG~~~~~~~~~~~  158 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+.. ..... .           ...+.+|||||...      ..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~   84 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------FR   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG------GH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH------HH
Confidence            469999999999999999999986321111222232222 12222 2           23799999999632      11


Q ss_pred             HHHHHHHhhhccCceeEEEEEEecCCce
Q 029512          159 DAWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+     ....+.+|++++|+|+++++
T Consensus        85 ~~~-----~~~~~~~d~~i~v~d~~~~~  107 (195)
T 3bc1_A           85 SLT-----TAFFRDAMGFLLLFDLTNEQ  107 (195)
T ss_dssp             HHH-----HHTTTTCSEEEEEEETTCHH
T ss_pred             HHH-----HHHHcCCCEEEEEEECCCHH
Confidence            222     22345789999999997653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.10  E-value=2.1e-10  Score=85.72  Aligned_cols=84  Identities=14%  Similarity=-0.085  Sum_probs=51.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|+|||||+|+|++........+..+.+........  ...+.+|||||....   .   ..+..+.    
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~---~---~~~~~~~----   72 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF---P---AMQRLSI----   72 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC---H---HHHHHHH----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh---H---HHHHHhc----
Confidence            358999999999999999999986311111122222222122111  346899999996431   1   1222222    


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                       +.+|++++|+|+++++
T Consensus        73 -~~~~~~i~v~d~~~~~   88 (172)
T 2erx_A           73 -SKGHAFILVYSITSRQ   88 (172)
T ss_dssp             -HHCSEEEEEEETTCHH
T ss_pred             -ccCCEEEEEEECcCHH
Confidence             2468999999987653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.10  E-value=1.8e-10  Score=89.68  Aligned_cols=82  Identities=21%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ..++|+++|.+|||||||+|+|++.. . .....+..+.+  ...... +  ..+.+|||||.....      ..+..  
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~--   88 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK-F-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR------TITTA--   88 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC-C-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT------CCCHH--
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH------HHHHH--
Confidence            45799999999999999999999873 2 22223333332  223332 3  579999999953211      01111  


Q ss_pred             hhhccCceeEEEEEEecCCc
Q 029512          166 SISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~  185 (192)
                         ..+.+|++++|+|++++
T Consensus        89 ---~~~~~d~ii~v~d~~~~  105 (213)
T 3cph_A           89 ---YYRGAMGIILVYDVTDE  105 (213)
T ss_dssp             ---HHTTCSEEEEEEETTCH
T ss_pred             ---HhccCCEEEEEEECCCH
Confidence               22467899999998765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.10  E-value=2.9e-10  Score=88.12  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|+|||||+|+|++... . ....+..+.+.  ..... +  ..+.+|||||......      .+    
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~----   74 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKF-S-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS------LG----   74 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCC-C-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC------SC----
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCC-C-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH------hH----
Confidence            346999999999999999999998742 1 22222233332  22222 2  4789999999532100      01    


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                       ....+.+|++++|+|+++++
T Consensus        75 -~~~~~~~d~~i~v~d~~~~~   94 (207)
T 1vg8_A           75 -VAFYRGADCCVLVFDVTAPN   94 (207)
T ss_dssp             -CGGGTTCSEEEEEEETTCHH
T ss_pred             -HHHHhCCcEEEEEEECCCHH
Confidence             12345679999999987653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.10  E-value=3.1e-10  Score=102.28  Aligned_cols=90  Identities=18%  Similarity=0.208  Sum_probs=57.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCce--eecCCCCceeEEEEEee-------------------------C-----
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKL-------------------------G-----  137 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~--~~~~~~g~T~~~~~~~~-------------------------~-----  137 (192)
                      ...+.|+++|.+|+|||||+|+|++. .+.  .++..+++|+.......                         +     
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~-~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQ-EVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTS-CCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC-ccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            45689999999999999999999997 333  46666666553221110                         0     


Q ss_pred             ------------CeEEEEECCCCCCCCChHH-----HHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          138 ------------TKLCLVDLPGYGFAYAKEE-----VKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       138 ------------~~~~lvDtPG~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                                  ..+.||||||+........     ....+..+     ...+|++++|+|++..
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~-----l~~aD~il~VvDa~~~  201 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWF-----AERVDLIILLFDAHKL  201 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHH-----HHHCSEEEEEEETTSC
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHH-----HHhCCEEEEEEeCCcC
Confidence                        3689999999875211100     11122222     2357999999999764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.10  E-value=4.1e-10  Score=87.02  Aligned_cols=83  Identities=14%  Similarity=0.056  Sum_probs=52.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|||||||+|+|++.. .... ....+.+........  ...+.+|||||...       ...+..+.  
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~--   96 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKR-FIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-------TIQREGHM--   96 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-------CHHHHHHH--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-------ccchhhhh--
Confidence            35699999999999999999999873 2211 122222221112112  35689999999765       11222222  


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                         +.+|++++|+|+++++
T Consensus        97 ---~~~d~iilv~D~~~~~  112 (196)
T 2atv_A           97 ---RWGEGFVLVYDITDRG  112 (196)
T ss_dssp             ---HHCSEEEEEEETTCHH
T ss_pred             ---ccCCEEEEEEECcCHH
Confidence               3468999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.09  E-value=3.3e-10  Score=85.93  Aligned_cols=82  Identities=13%  Similarity=0.070  Sum_probs=52.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|+|||||+|+|++..   ......+++...   .....+  ..+.+|||||....      ...+..+.
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~   87 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY------AAIRDNYF   87 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC------HHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc------HHHHHHHh
Confidence            34699999999999999999999873   223333333222   122222  47899999996431      12232322


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                           +.+|.+++|+|+++++
T Consensus        88 -----~~~d~~i~v~d~~~~~  103 (187)
T 2a9k_A           88 -----RSGEGFLCVFSITEME  103 (187)
T ss_dssp             -----HHCSEEEEEEETTCHH
T ss_pred             -----ccCCEEEEEEECcCHH
Confidence                 2578899999988653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.09  E-value=3.3e-10  Score=87.15  Aligned_cols=84  Identities=12%  Similarity=-0.086  Sum_probs=51.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ...+|+++|.+|||||||+|+|++........+..+.+........  ...+.+|||||....      ...+..+.   
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~---   77 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF------PAMQRLSI---   77 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC------HHHHHHHH---
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh------HHHHHHhh---
Confidence            4579999999999999999999986311111122222222122111  347899999995321      12222222   


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                        ..+|++++|+|++++
T Consensus        78 --~~~d~~i~v~d~~~~   92 (199)
T 2gf0_A           78 --SKGHAFILVFSVTSK   92 (199)
T ss_dssp             --HHCSEEEEEEETTCH
T ss_pred             --ccCCEEEEEEECcCH
Confidence              346899999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.09  E-value=2.6e-10  Score=88.26  Aligned_cols=84  Identities=15%  Similarity=0.109  Sum_probs=52.2

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ....+|+++|.+|||||||+|+|++.. .....++.+.+.. .....+..+.+|||||.....      ..+..+     
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~------~~~~~~-----   93 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKNICFTVWDVGGQDKIR------PLWRHY-----   93 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSC-CEEEEEETTEEEE-EEEETTEEEEEEECC-----C------TTHHHH-----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCC-ccccCCcCceeEE-EEEECCEEEEEEECCCCHhHH------HHHHHH-----
Confidence            345799999999999999999999763 3322222232211 122246789999999964311      122222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|+++++
T Consensus        94 ~~~~d~iilv~D~~~~~  110 (192)
T 2b6h_A           94 FQNTQGLIFVVDSNDRE  110 (192)
T ss_dssp             HHTCCEEEEEEETTCGG
T ss_pred             hccCCEEEEEEECCCHH
Confidence            23679999999998763

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.09  E-value=1.1e-10  Score=89.96  Aligned_cols=84  Identities=17%  Similarity=0.068  Sum_probs=56.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|||||||+|+|++...........+.+.......   .+..+.+|||||.      +.....+..+   
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~~~~~~~~~---   92 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ------ERYRTITTAY---   92 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH------HHCHHHHHHH---
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh------HHHHHHHHHH---
Confidence            456999999999999999999998642222223334444444333   2457999999992      2222333333   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.+|++++|+|++++
T Consensus        93 --~~~~d~~i~v~d~~~~  108 (191)
T 3dz8_A           93 --YRGAMGFILMYDITNE  108 (191)
T ss_dssp             --HTTCCEEEEEEETTCH
T ss_pred             --HccCCEEEEEEECcCH
Confidence              3468999999998764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.09  E-value=2.7e-10  Score=86.63  Aligned_cols=80  Identities=16%  Similarity=0.062  Sum_probs=49.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EE-eeC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~-~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|||||||+|+|++..   .....++++.+..  .. ..+  ..+.+|||||......      .+..+. 
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~-   73 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA------MRDQYM-   73 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT------THHHHH-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH------HHHHHH-
Confidence            3589999999999999999999873   2334444443322  12 223  3477899999543111      122221 


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                          +.+|++++|+|++++
T Consensus        74 ----~~~~~~i~v~d~~~~   88 (189)
T 4dsu_A           74 ----RTGEGFLCVFAINNT   88 (189)
T ss_dssp             ----HHCSEEEEEEETTCH
T ss_pred             ----hcCCEEEEEEECCCH
Confidence                246888888888764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.09  E-value=8.6e-10  Score=86.20  Aligned_cols=80  Identities=19%  Similarity=0.340  Sum_probs=53.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHH-HHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKD-AWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~-~~~~~~  165 (192)
                      ..++|+++|.+|+|||||+|+|++..   .....+.++.+......    +..+.+|||||..      .... .+..+ 
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~~~~~~~~~-   75 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE------SLRFQLLDRF-   75 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH------HHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCCh------hHHHHHHHHH-
Confidence            45799999999999999999999873   22333333433333332    4579999999953      2222 23332 


Q ss_pred             hhhccCceeEEEEEEecCC
Q 029512          166 SISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~  184 (192)
                          .+.++++++|+|++.
T Consensus        76 ----~~~~~~~i~v~d~~~   90 (214)
T 2fh5_B           76 ----KSSARAVVFVVDSAA   90 (214)
T ss_dssp             ----GGGEEEEEEEEETTT
T ss_pred             ----HhhCCEEEEEEECCC
Confidence                456899999999876

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.08  E-value=2.9e-10  Score=85.79  Aligned_cols=84  Identities=15%  Similarity=0.098  Sum_probs=53.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C---CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..+|+++|.+|||||||+|+|++........+..+.......... +   ..+.+|||||......      .+..+   
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~---   76 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK------MLDKY---   76 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT------THHHH---
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc------hhhHH---
Confidence            468999999999999999999986321112223332222222222 2   6799999999643111      12222   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.+|++++|+|+++++
T Consensus        77 --~~~~d~~i~v~d~~~~~   93 (178)
T 2hxs_A           77 --IYGAQGVLLVYDITNYQ   93 (178)
T ss_dssp             --HTTCSEEEEEEETTCHH
T ss_pred             --HhhCCEEEEEEECCCHH
Confidence              24679999999998754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.08  E-value=3.4e-10  Score=85.56  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=52.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|+|||||+|+|++.. .......+.++.+..  .... +  ..+.+|||||...      ....+     
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~------~~~~~-----   77 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER------FRSVT-----   77 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH------HHHHH-----
Confidence            4699999999999999999999873 222222333333322  2222 2  3789999999532      11111     


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ....+.+|++++|+|+++++
T Consensus        78 ~~~~~~~d~ii~v~d~~~~~   97 (180)
T 2g6b_A           78 HAYYRDAHALLLLYDVTNKA   97 (180)
T ss_dssp             -CCGGGCSEEEEEEETTCHH
T ss_pred             HHHccCCCEEEEEEECCCHH
Confidence            22345689999999988753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.07  E-value=3.8e-10  Score=84.04  Aligned_cols=79  Identities=13%  Similarity=0.066  Sum_probs=49.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|+|||||+|+|++.. .  ......++...  .....   ...+.+|||||......      .+..+.  
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--   72 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGI-F--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA------MRDLYM--   72 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC-C--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT------HHHHHH--
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-C--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH------HHHHHh--
Confidence            589999999999999999999863 2  22222222221  11122   34689999999653211      222222  


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                         +.+|++++|+|++++
T Consensus        73 ---~~~d~~i~v~d~~~~   87 (167)
T 1c1y_A           73 ---KNGQGFALVYSITAQ   87 (167)
T ss_dssp             ---HHCSEEEEEEETTCH
T ss_pred             ---ccCCEEEEEEECCCH
Confidence               246889999998765

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.07  E-value=6.7e-10  Score=87.02  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|||||||+|+|++.. . .....+..+.+.  ..... +  ..+.+|||||...      ....+     
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~-----   92 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGL-F-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER------FRSIT-----   92 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS-C-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHH-----
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC-C-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH------HHHHH-----
Confidence            4699999999999999999999863 1 122222222332  22222 2  4789999999421      11111     


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ....+.+|++++|+|+++++
T Consensus        93 ~~~~~~~d~~i~v~D~~~~~  112 (201)
T 2ew1_A           93 QSYYRSANALILTYDITCEE  112 (201)
T ss_dssp             GGGSTTCSEEEEEEETTCHH
T ss_pred             HHHHhcCCEEEEEEECCCHH
Confidence            23456789999999987653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.07  E-value=5.5e-10  Score=87.05  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=50.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|+|++...........+.......... +  ..+.+|||||...      ....+..+    
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~----   98 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER------FRTITQSY----   98 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG------GHHHHHHH----
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh------HHHHHHHH----
Confidence            468999999999999999999986311111122122121222222 2  4799999999531      12233333    


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                       .+.+|++++|+|+++++
T Consensus        99 -~~~~d~iilv~D~~~~~  115 (201)
T 2hup_A           99 -YRSANGAILAYDITKRS  115 (201)
T ss_dssp             -HTTCSEEEEEEETTBHH
T ss_pred             -HhhCCEEEEEEECCCHH
Confidence             24689999999987653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.06  E-value=3.5e-10  Score=87.07  Aligned_cols=84  Identities=18%  Similarity=0.096  Sum_probs=52.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC---CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|+|++...........+.+........+   ..+.+|||||......      .+..     
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~-----   89 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS------ITRS-----   89 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC------CCHH-----
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh------hHHH-----
Confidence            4589999999999999999999873211122233444433333332   4789999999532111      1111     


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|+++++
T Consensus        90 ~~~~~d~ii~v~d~~~~~  107 (191)
T 2a5j_A           90 YYRGAAGALLVYDITRRE  107 (191)
T ss_dssp             HHTTCSEEEEEEETTCHH
T ss_pred             HhccCCEEEEEEECCCHH
Confidence            124678999999987653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.06  E-value=6.4e-10  Score=84.34  Aligned_cols=84  Identities=14%  Similarity=-0.060  Sum_probs=51.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|+|||||+|+|++...........+.+........  ...+.+|||||.....          .+. ...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~-~~~   73 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD----------RLR-PLS   73 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT----------TTG-GGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHH----------HHH-HHh
Confidence            458999999999999999999976311111122222222122222  3457799999963210          010 123


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|++++.
T Consensus        74 ~~~~d~~i~v~d~~~~~   90 (186)
T 1mh1_A           74 YPQTDVSLICFSLVSPA   90 (186)
T ss_dssp             CTTCSEEEEEEETTCHH
T ss_pred             ccCCcEEEEEEECCChh
Confidence            46789999999987753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.05  E-value=3e-10  Score=88.42  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=49.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|+|++...........+.+........ +  ..+.+|||||...      ....+.     .
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~~-----~   93 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER------FRSVTR-----S   93 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH------HSCCCH-----H
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh------HHHHHH-----H
Confidence            469999999999999999999986311111122222222223322 2  5799999999321      111111     1


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|+++++
T Consensus        94 ~~~~~d~~i~v~d~~~~~  111 (200)
T 2o52_A           94 YYRGAAGALLVYDITSRE  111 (200)
T ss_dssp             HHTTCSEEEEEEETTCHH
T ss_pred             HhccCCEEEEEEECcCHH
Confidence            234679999999987653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.05  E-value=1.9e-10  Score=90.31  Aligned_cols=84  Identities=14%  Similarity=0.006  Sum_probs=56.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC----CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~----~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ...+|+++|.+|||||||+|+|++...........+.+.........    ..+.+|||||......      .+..+  
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~--   81 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV------LKDVY--   81 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC------CCHHH--
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch------HHHHH--
Confidence            34699999999999999999999764334445555655554443332    4699999999643111      11111  


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                         ...+|++++|+|++++
T Consensus        82 ---~~~~d~~i~v~d~~~~   97 (218)
T 4djt_A           82 ---YIGASGAILFFDVTSR   97 (218)
T ss_dssp             ---HTTCSEEEEEEETTCH
T ss_pred             ---hhcCCEEEEEEeCCCH
Confidence               2457889999998765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.04  E-value=1.1e-09  Score=85.58  Aligned_cols=84  Identities=11%  Similarity=-0.071  Sum_probs=50.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||+|+|++........+..+.+........+  ..+.+|||||......      .+     ...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~~   93 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR------LR-----PLS   93 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTT------TG-----GGG
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH------HH-----Hhh
Confidence            3589999999999999999999873211111222222222222222  4689999999643111      01     123


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|++.++
T Consensus        94 ~~~~d~~i~v~d~~~~~  110 (207)
T 2fv8_A           94 YPDTDVILMCFSVDSPD  110 (207)
T ss_dssp             CTTCCEEEEEEETTCHH
T ss_pred             cCCCCEEEEEEECCCHH
Confidence            45689999999987653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.04  E-value=4.9e-10  Score=87.01  Aligned_cols=82  Identities=13%  Similarity=0.014  Sum_probs=51.4

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL  164 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~  164 (192)
                      ....+|+++|.+|||||||+|+|++.. ..  .....++...  ....   ....+.+|||||.......      +   
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~-~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~---   89 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGE-FS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL------P---   89 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSC-CC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC------C---
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCC-CC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH------H---
Confidence            345799999999999999999999873 22  2222222221  1111   2466899999996431110      1   


Q ss_pred             HhhhccCceeEEEEEEecCCc
Q 029512          165 VSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s~~  185 (192)
                        ....+.+|++++|+|++++
T Consensus        90 --~~~~~~~d~~i~v~d~~~~  108 (201)
T 3oes_A           90 --YSFIIGVHGYVLVYSVTSL  108 (201)
T ss_dssp             --GGGTTTCCEEEEEEETTCH
T ss_pred             --HHHHhcCCEEEEEEeCCCH
Confidence              1234567888888888754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.04  E-value=7.1e-10  Score=87.69  Aligned_cols=83  Identities=22%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|+|++...........+.+........ +  ..+.+|||||......      .+     ..
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~   81 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA------IT-----SA   81 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC------CC-----GG
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh------hH-----HH
Confidence            469999999999999999999987321122223333333332333 2  4789999999543110      01     12


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.+|++++|+|++++
T Consensus        82 ~~~~~d~vilV~D~~~~   98 (223)
T 3cpj_B           82 YYRGAVGALIVYDISKS   98 (223)
T ss_dssp             GTTTCCEEEEEEC-CCH
T ss_pred             HhccCCEEEEEEeCCCH
Confidence            34567888999988765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.04  E-value=9.4e-10  Score=85.07  Aligned_cols=82  Identities=13%  Similarity=-0.010  Sum_probs=50.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|||||||+|++++..   ......+++.+.   .....+  ..+.+|||||......      .+    
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~----   85 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK------LR----   85 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS------SG----
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH------Hh----
Confidence            45699999999999999999999863   233333343322   122223  3577999999743111      01    


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                       -...+.+|++++|+|+++++
T Consensus        86 -~~~~~~~~~~i~v~d~~~~~  105 (201)
T 2q3h_A           86 -PLCYTNTDIFLLCFSVVSPS  105 (201)
T ss_dssp             -GGGGTTCSEEEEEEETTCHH
T ss_pred             -HhhcCCCcEEEEEEECCCHH
Confidence             11245679999999987654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.04  E-value=5.6e-10  Score=95.16  Aligned_cols=25  Identities=40%  Similarity=0.660  Sum_probs=23.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|.|+++|.+|+|||||+|+|+|.
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5679999999999999999999996

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.04  E-value=7.4e-10  Score=85.31  Aligned_cols=84  Identities=13%  Similarity=-0.093  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||+|++++........+..+.+........+  ..+.+|||||.....      ..+     ...
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~-----~~~   91 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD------RLR-----PLS   91 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT------TTG-----GGG
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH------HHh-----Hhh
Confidence            4699999999999999999999874111111222222222222222  456999999942210      011     223


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|+++++
T Consensus        92 ~~~~d~~i~v~d~~~~~  108 (194)
T 3reg_A           92 YADSDVVLLCFAVNNRT  108 (194)
T ss_dssp             CTTCSEEEEEEETTCHH
T ss_pred             ccCCcEEEEEEECCCHH
Confidence            45789999999987653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.03  E-value=6e-10  Score=87.28  Aligned_cols=84  Identities=17%  Similarity=0.067  Sum_probs=51.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE-EEee------------CCeEEEEECCCCCCCCChHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL------------GTKLCLVDLPGYGFAYAKEEVK  158 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~-~~~~------------~~~~~lvDtPG~~~~~~~~~~~  158 (192)
                      ..+|+++|.+|||||||+|+|++...........+.+.... ....            ...+.||||||.      +...
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------~~~~   98 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------ERFR   98 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH------HHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc------HhHH
Confidence            46999999999999999999998631111111111111111 1111            356999999992      3233


Q ss_pred             HHHHHHHhhhccCceeEEEEEEecCCce
Q 029512          159 DAWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+..+     .+.+|++++|+|++.++
T Consensus        99 ~~~~~~-----~~~~d~iilV~D~~~~~  121 (217)
T 2f7s_A           99 SLTTAF-----FRDAMGFLLMFDLTSQQ  121 (217)
T ss_dssp             HHHHHH-----HTTCCEEEEEEETTCHH
T ss_pred             hHHHHH-----hcCCCEEEEEEECcCHH
Confidence            333333     34689999999987653

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.03  E-value=2.8e-10  Score=105.21  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL  127 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~  127 (192)
                      .++|+++|.+|+|||||+|+|+|. ....++..|++
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T  103 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCT  103 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCc
Confidence            569999999999999999999998 56666776665

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.03  E-value=7.8e-10  Score=84.65  Aligned_cols=80  Identities=15%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|||||||+|+|++..   ......+++.+..  .... +  ..+.+|||||...      ....+.    
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~----   87 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE------YSAMRD----   87 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCC---CccccCCccceEEEEEEEECCEEEEEEEEECCChHH------HHHHHH----
Confidence            3589999999999999999999873   2223333332221  1222 2  4589999999532      111111    


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                       ...+.+|++++|+|++++
T Consensus        88 -~~~~~~d~~i~v~d~~~~  105 (190)
T 3con_A           88 -QYMRTGEGFLCVFAINNS  105 (190)
T ss_dssp             ---CTTCSEEEEEEETTCH
T ss_pred             -HhhCcCCEEEEEEECcCH
Confidence             223467888888888764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.03  E-value=4.4e-10  Score=85.42  Aligned_cols=81  Identities=14%  Similarity=0.080  Sum_probs=49.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|+|||||+|+|++..   .......++..  ...... +  ..+.+|||||......      .+..+ 
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~-   86 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA------MREQY-   86 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS------SHHHH-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH------HHHHH-
Confidence            45699999999999999999999863   22222222221  122222 3  3466799999532111      11122 


Q ss_pred             hhhccCceeEEEEEEecCCc
Q 029512          166 SISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~  185 (192)
                          .+.+|++++|+|++++
T Consensus        87 ----~~~~d~~i~v~d~~~~  102 (183)
T 3kkq_A           87 ----MRTGDGFLIVYSVTDK  102 (183)
T ss_dssp             ----HHHCSEEEEEEETTCH
T ss_pred             ----HhcCCEEEEEEECCCH
Confidence                1246889999998765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.03  E-value=4.8e-10  Score=86.05  Aligned_cols=83  Identities=27%  Similarity=0.292  Sum_probs=51.2

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCc-eeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~-~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ...++|+++|.+|||||||+|+|++.... ..++..++++.+.    .+..+.+|||||.......      +..+.. .
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~------~~~~~~-~  114 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRYK------LSDYLK-T  114 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSCC------HHHHHH-H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHHH------HHHHHH-h
Confidence            35679999999999999999999987311 1112223333221    4678999999997542211      112211 1


Q ss_pred             ccCceeEEEEEEecC
Q 029512          169 YRNFWSCTCFLIYIF  183 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s  183 (192)
                      ....+|++++|+|++
T Consensus       115 ~~~~~~~~i~v~d~~  129 (193)
T 2ged_A          115 RAKFVKGLIFMVDST  129 (193)
T ss_dssp             HGGGEEEEEEEEETT
T ss_pred             hcccCCEEEEEEECC
Confidence            224579999999998

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.03  E-value=1.1e-09  Score=84.20  Aligned_cols=82  Identities=12%  Similarity=-0.006  Sum_probs=52.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce---eEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T---~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|+|||||+|+|++..   .......++   ........+  ..+.+|||||......      .+    
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~----   83 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR------LR----   83 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT------TG----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH------HH----
Confidence            34699999999999999999999873   122222222   211222223  5688999999643111      11    


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                       ....+.+|++++|+|+++++
T Consensus        84 -~~~~~~~d~~i~v~d~~~~~  103 (194)
T 2atx_A           84 -PLSYPMTDVFLICFSVVNPA  103 (194)
T ss_dssp             -GGGCTTCSEEEEEEETTCHH
T ss_pred             -HHhcCCCCEEEEEEECCCHH
Confidence             12345689999999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.03  E-value=8.4e-10  Score=86.19  Aligned_cols=82  Identities=13%  Similarity=-0.024  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCC--eEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGT--KLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~--~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|||||||+|++++..   ......+++.+..   ....+.  .+.+|||||.....      ..+    
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~----   95 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD------RLR----   95 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSC---CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT------TTG----
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCC---CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH------HHH----
Confidence            45699999999999999999999863   2333344443322   122233  45599999963210      011    


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                       ....+.+|++++|+|++++.
T Consensus        96 -~~~~~~~d~~i~v~d~~~~~  115 (204)
T 4gzl_A           96 -PLSYPQTDVFLICFSLVSPA  115 (204)
T ss_dssp             -GGGCTTCSEEEEEEETTCHH
T ss_pred             -HHHhccCCEEEEEEECCCHH
Confidence             22346789999999987653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.03  E-value=6.8e-10  Score=82.13  Aligned_cols=80  Identities=14%  Similarity=0.084  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|+|||||+|+|++.. .  ......++.+.  .....   ...+.+|||||.....      ..+..+.  
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~--   72 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNH-F--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS------AMRDQYM--   72 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS-C--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC------HHHHHHH--
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc-C--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh------HHHHHhh--
Confidence            479999999999999999999873 2  22222222221  11222   2457899999964311      1222222  


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                         ..+|.+++++|+++++
T Consensus        73 ---~~~~~~i~v~d~~~~~   88 (166)
T 2ce2_X           73 ---RTGEGFLCVFAINNTK   88 (166)
T ss_dssp             ---HHCSEEEEEEETTCHH
T ss_pred             ---ccCCEEEEEEECCCHH
Confidence               2468889999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.02  E-value=5.3e-10  Score=84.61  Aligned_cols=78  Identities=10%  Similarity=0.065  Sum_probs=50.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||+|++++.. .....+..+.+........  ...+.+|||||...   .        .+     
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---~--------~~-----   69 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---A--------KF-----   69 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSC-CCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---H--------HH-----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch---h--------HH-----
Confidence            4689999999999999999999873 3333333333322222222  24688999999643   0        11     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+++|++++|+|+++++
T Consensus        70 ~~~~d~~ilv~D~~~~~   86 (178)
T 2iwr_A           70 SGWADAVIFVFSLEDEN   86 (178)
T ss_dssp             HHHCSEEEEEEETTCHH
T ss_pred             HHhCCEEEEEEECcCHH
Confidence            12468888888887653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.02  E-value=9e-10  Score=86.66  Aligned_cols=81  Identities=12%  Similarity=0.047  Sum_probs=43.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|||||||+|+|++.. .  ......++.+.  .....   ...+.+|||||...      ....+..   
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~~~---  101 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGA-F--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD------YDRLRPL---  101 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC-C--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchh------hhHHHHH---
Confidence            4699999999999999999999863 2  12222222211  11222   23689999999532      1112211   


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                        ..+.+|++++|+|+++++
T Consensus       102 --~~~~~d~~i~v~d~~~~~  119 (214)
T 2j1l_A          102 --FYPDASVLLLCFDVTSPN  119 (214)
T ss_dssp             -----CEEEEEEEEETTCHH
T ss_pred             --HhccCCEEEEEEECcCHH
Confidence              235789999999987653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.02  E-value=2.4e-10  Score=90.11  Aligned_cols=84  Identities=11%  Similarity=0.034  Sum_probs=58.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...+|+++|.+|||||||+|+++............|+|........   +..+.+|||||......      .+..+   
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~---   84 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG------LRDGY---   84 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC------CCHHH---
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH------HHHHH---
Confidence            4569999999999999999995543234566778888887665543   45789999999432110      11111   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.++++++|+|++++
T Consensus        85 --~~~~~~~i~v~d~~~~  100 (221)
T 3gj0_A           85 --YIQAQCAIIMFDVTSR  100 (221)
T ss_dssp             --HTTCCEEEEEEETTCH
T ss_pred             --HhcCCEEEEEEECCCH
Confidence              2367899999998765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.02  E-value=1.3e-09  Score=101.49  Aligned_cols=93  Identities=20%  Similarity=0.166  Sum_probs=59.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE----------------------------------------
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT----------------------------------------  130 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~----------------------------------------  130 (192)
                      ..|+|+++|.+|+|||||+|+|+|.. +...+.. .+|+.                                        
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~-~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~  127 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  127 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSC-CSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC-ccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence            57899999999999999999999973 2111211 12221                                        


Q ss_pred             -----------EE----EEeeCCeEEEEECCCCCCCC---ChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          131 -----------IN----FFKLGTKLCLVDLPGYGFAY---AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       131 -----------~~----~~~~~~~~~lvDtPG~~~~~---~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                                 +.    .......+.|+||||+....   ....+...+..++.-.-....|++++|+|++.+
T Consensus       128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~  200 (772)
T 3zvr_A          128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD  200 (772)
T ss_dssp             HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC
T ss_pred             hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC
Confidence                       11    11124568999999998732   123333445555441111678999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.01  E-value=1.7e-09  Score=84.37  Aligned_cols=85  Identities=15%  Similarity=-0.056  Sum_probs=52.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ...+|+++|.+|+|||||+|.+++........+..+..........+  ..+.+|||||......      .+     -.
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~   76 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR------LR-----PL   76 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-------------CG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH------HH-----Hh
Confidence            34699999999999999999999863111111222222222222222  4789999999743111      11     12


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|+++++
T Consensus        77 ~~~~~d~~ilv~d~~~~~   94 (212)
T 2j0v_A           77 SYRGADIFVLAFSLISKA   94 (212)
T ss_dssp             GGTTCSEEEEEEETTCHH
T ss_pred             hccCCCEEEEEEECCCHH
Confidence            345689999999987754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.00  E-value=5.9e-10  Score=83.41  Aligned_cols=82  Identities=12%  Similarity=0.023  Sum_probs=45.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||+|+|++.. ...... +..|.+.  .....   ...+.+|||||......     ..+..+   
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~---   72 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQ-GDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG-----WLQDHC---   72 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-------------CHH---
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcc-Cccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccch-----hhhhhh---
Confidence            589999999999999999998753 122211 1112211  11112   35688999999753110     011111   


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                        .+.+|++++|+|+++++
T Consensus        73 --~~~~d~~i~v~d~~~~~   89 (169)
T 3q85_A           73 --LQTGDAFLIVFSVTDRR   89 (169)
T ss_dssp             --HHHCSEEEEEEETTCHH
T ss_pred             --hccCCEEEEEEECCChH
Confidence              12468899999987753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.98  E-value=1.4e-09  Score=85.67  Aligned_cols=85  Identities=14%  Similarity=0.027  Sum_probs=51.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ...+|+++|.+|||||||+|+|++........+..+.+........  ...+.+|||||...-.      ..+     -.
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~-----~~   94 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD------NVR-----PL   94 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT------TTG-----GG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH------HHH-----HH
Confidence            4579999999999999999999987311111122222222111111  3578999999953210      011     12


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.+|++++|+|++++.
T Consensus        95 ~~~~~d~~i~v~d~~~~~  112 (214)
T 3q3j_B           95 CYSDSDAVLLCFDISRPE  112 (214)
T ss_dssp             GCTTCSEEEEEEETTCTH
T ss_pred             HcCCCeEEEEEEECcCHH
Confidence            345689999999988764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.98  E-value=2.9e-10  Score=96.95  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=23.0

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...+.|+|+|+||||||||+|+|++
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4577999999999999999999997

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.98  E-value=1.1e-10  Score=102.28  Aligned_cols=88  Identities=32%  Similarity=0.263  Sum_probs=52.4

Q ss_pred             CCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCC-eEEEEECCCCCCCC--ChHHHHHHHH
Q 029512           89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAY--AKEEVKDAWE  162 (192)
Q Consensus        89 ~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~-~~~lvDtPG~~~~~--~~~~~~~~~~  162 (192)
                      ....++|+++|.+|+|||||+|+|++. ....++..+|+|.+.....   .+. .+.+|||||+.+..  ........  
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~--  107 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA--  107 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH--
Confidence            345679999999999999999999997 4556778888888765333   233 89999999986521  11111221  


Q ss_pred             HHHhhhccCceeEEEEEEecC
Q 029512          163 ELVSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       163 ~~~~l~~~~~~~~v~~vvD~s  183 (192)
                          ......+|++++|+|++
T Consensus       108 ----~~~l~~aD~vllVvD~~  124 (423)
T 3qq5_A          108 ----RRVFYRADCGILVTDSA  124 (423)
T ss_dssp             ----HHHHTSCSEEEEECSSS
T ss_pred             ----HHHHhcCCEEEEEEeCC
Confidence                11234689999999984

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.98  E-value=1.6e-09  Score=84.12  Aligned_cols=84  Identities=12%  Similarity=-0.058  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|+|||||+|++++........+..+.+........+  ..+.+|||||.....      ..+     -..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~-----~~~   93 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD------RLR-----PLS   93 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT------TTG-----GGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHH------HHH-----HHh
Confidence            3589999999999999999999873211111222222211222222  478999999953210      011     123


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|++.++
T Consensus        94 ~~~~d~~i~v~d~~~~~  110 (201)
T 2gco_A           94 YPDTDVILMCFSIDSPD  110 (201)
T ss_dssp             CTTCSEEEEEEETTCHH
T ss_pred             cCCCCEEEEEEECCCHH
Confidence            45789999999987653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.98  E-value=5.9e-10  Score=84.38  Aligned_cols=82  Identities=13%  Similarity=-0.051  Sum_probs=46.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE-----EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~-----~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|+|||||+|++++..   ......+++.+..     .......+.+|||||......      .+    
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~----   73 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR------LR----   73 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC---CC----------CBCCCC-------CEEECCCC-CTTTT------TG----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh------hH----
Confidence            35799999999999999999999863   1222222222111     111234567999999643110      11    


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                       ....+.+|++++|+|+++++
T Consensus        74 -~~~~~~~d~~i~v~d~~~~~   93 (182)
T 3bwd_D           74 -PLSYRGADVFILAFSLISKA   93 (182)
T ss_dssp             -GGGGTTCSEEEEEEETTCHH
T ss_pred             -HhhccCCCEEEEEEECCCHH
Confidence             12345689999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.97  E-value=1.8e-09  Score=82.50  Aligned_cols=84  Identities=15%  Similarity=0.022  Sum_probs=51.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||+|+|++........+..+.+........  ...+.+|||||.....          .+. -..
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~-~~~   75 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------NVR-PLS   75 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT----------TTG-GGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhh----------hhH-Hhh
Confidence            468999999999999999999986311111122222221111111  3468999999953210          000 123


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|+++++
T Consensus        76 ~~~~~~~i~v~d~~~~~   92 (184)
T 1m7b_A           76 YPDSDAVLICFDISRPE   92 (184)
T ss_dssp             CTTCSEEEEEEETTCHH
T ss_pred             cCCCcEEEEEEECCCHH
Confidence            45678999999987653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.97  E-value=3.8e-10  Score=85.82  Aligned_cols=82  Identities=18%  Similarity=0.203  Sum_probs=36.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|+|||||+|+|++..  ......+.++.+..  .... +  ..+.+|||||...          +..+. 
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~-   74 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT-   74 (183)
T ss_dssp             EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------C-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhH-
Confidence            4689999999999999999999763  12222233333332  2222 3  5799999999532          11111 


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ....+.+|++++|+|+++++
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~   94 (183)
T 2fu5_C           75 TAYYRGAMGIMLVYDITNEK   94 (183)
T ss_dssp             CTTTTTCSEEEEEEETTCHH
T ss_pred             HHHHhcCCEEEEEEECcCHH
Confidence            22345788999999988753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.97  E-value=8.5e-10  Score=86.49  Aligned_cols=82  Identities=28%  Similarity=0.333  Sum_probs=53.2

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ...++|+++|.+|+|||||+|+|++.. ....  +..+.++.+    .....+.+|||||....      ...+..+.. 
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~-~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~------~~~~~~~~~-   77 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS-VRPTVVSQEPLSAAD----YDGSGVTLVDFPGHVKL------RYKLSDYLK-   77 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS-CCCBCCCSSCEEETT----GGGSSCEEEECCCCGGG------THHHHHHHH-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC-CCCeeeecCceEEEE----eeCceEEEEECCCcHHH------HHHHHHHHH-
Confidence            456899999999999999999999873 2211  122222221    14678999999997431      122333321 


Q ss_pred             hccCceeEEEEEEecC
Q 029512          168 SYRNFWSCTCFLIYIF  183 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s  183 (192)
                      .....++++++|+|++
T Consensus        78 ~~~~~~~~~i~v~D~~   93 (218)
T 1nrj_B           78 TRAKFVKGLIFMVDST   93 (218)
T ss_dssp             HHGGGEEEEEEEEETT
T ss_pred             hccccCCEEEEEEECC
Confidence            1123478999999998

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.96  E-value=7.8e-10  Score=85.47  Aligned_cols=83  Identities=18%  Similarity=0.214  Sum_probs=33.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCcee-EE--EEEee-----CCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~-~~--~~~~~-----~~~~~lvDtPG~~~~~~~~~~~~~~~~  163 (192)
                      ..+|+++|.+|+|||||+|+|++.. .........++. +.  .....     ...+.+|||||..      .    +..
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------~----~~~   88 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSKG-SKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD------L----YKE   88 (208)
T ss_dssp             EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTH------H----HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-CcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH------H----HHH
Confidence            4599999999999999999999861 122223322322 22  12222     2469999999962      1    111


Q ss_pred             HHhhhccCceeEEEEEEecCCce
Q 029512          164 LVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       164 ~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      +. ....+.+|++++|+|+++++
T Consensus        89 ~~-~~~~~~~d~~i~v~d~~~~~  110 (208)
T 2yc2_C           89 QI-SQYWNGVYYAILVFDVSSME  110 (208)
T ss_dssp             HH-STTCCCCCEEEEEEETTCHH
T ss_pred             HH-HHHHhhCcEEEEEEECCCHH
Confidence            21 23456789999999997753

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.96  E-value=2e-09  Score=94.43  Aligned_cols=84  Identities=17%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceee------------------------------cCCCCceeEEEEEe---e
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---L  136 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~------------------------------~~~~g~T~~~~~~~---~  136 (192)
                      ....+|+++|.+|+|||||+|+|++... ...                              ....|.|.+.....   .
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTG-MVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcC-CCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            3457999999999999999999975421 110                              11257788765433   3


Q ss_pred             CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      +..+.+|||||...     .....      ......+|++++|+|++..
T Consensus        94 ~~~~~iiDTPGh~~-----f~~~~------~~~~~~aD~~ilVVDa~~g  131 (439)
T 3j2k_7           94 KKHFTILDAPGHKS-----FVPNM------IGGASQADLAVLVISARKG  131 (439)
T ss_pred             CeEEEEEECCChHH-----HHHHH------HhhHhhCCEEEEEEECCCC
Confidence            67899999999531     11111      2334568999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.93  E-value=3.3e-09  Score=82.10  Aligned_cols=86  Identities=15%  Similarity=0.059  Sum_probs=52.1

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHH--HHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAW--EEL  164 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~--~~~  164 (192)
                      ....+|+++|.+|||||||+|.+++......+.....++......   .....+.+|||||...-...     .|  ..+
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~   92 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP-----TFDYEMI   92 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT-----TCCHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh-----hhhcccc
Confidence            456799999999999999999999863211111111222222222   12468999999995431110     01  111


Q ss_pred             HhhhccCceeEEEEEEecCCc
Q 029512          165 VSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s~~  185 (192)
                           .+.+|++++|+|++++
T Consensus        93 -----~~~~~~~i~v~d~~~~  108 (196)
T 3llu_A           93 -----FRGTGALIYVIDAQDD  108 (196)
T ss_dssp             -----HHTCSEEEEEEETTSC
T ss_pred             -----cccCCEEEEEEECCCc
Confidence                 1357999999999875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.93  E-value=3e-09  Score=83.47  Aligned_cols=84  Identities=15%  Similarity=0.044  Sum_probs=51.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||+|+|++...........+.+........  ...+.+|||||....          ..+. -..
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~-~~~   96 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVR-PLS   96 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTG-GGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHH-Hhh
Confidence            469999999999999999999987311111112222211111112  346899999995321          0011 123


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|+++++
T Consensus        97 ~~~~d~~ilv~D~~~~~  113 (205)
T 1gwn_A           97 YPDSDAVLICFDISRPE  113 (205)
T ss_dssp             CTTCSEEEEEEETTCHH
T ss_pred             ccCCCEEEEEEECCCHH
Confidence            45789999999987653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.88  E-value=5.1e-09  Score=80.20  Aligned_cols=81  Identities=12%  Similarity=0.117  Sum_probs=44.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEE--------eeCCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF--------KLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~--------~~~~~~~lvDtPG~~~~~~~~~~~~~~~~  163 (192)
                      .+|+++|.+|||||||+|.+++.. ....+. .+....+....        .....+.+|||||..      .....+..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~-~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~~~~~~~   75 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTK-KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE------EFYSTHPH   75 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH------HHHTTSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH------HHHHhhHH
Confidence            589999999999999999999852 112221 11112222111        125578999999942      11111111


Q ss_pred             HHhhhccCceeEEEEEEecCCc
Q 029512          164 LVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       164 ~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      +.     +..+++++|.|.+.+
T Consensus        76 ~~-----~~~~~~i~v~d~~~~   92 (184)
T 2zej_A           76 FM-----TQRALYLAVYDLSKG   92 (184)
T ss_dssp             HH-----HHSEEEEEEEEGGGC
T ss_pred             Hc-----cCCcEEEEEEeCCcc
Confidence            11     235777788887664

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.88  E-value=3.2e-09  Score=81.62  Aligned_cols=81  Identities=14%  Similarity=0.040  Sum_probs=49.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|||||||+|++++..   .......++.+.   ....  ....+.+|||||......   +    ..+ 
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~----~~~-   88 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKR---FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN---C----ERY-   88 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC---T----HHH-
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh---H----HHH-
Confidence            34699999999999999999999873   223333333221   1111  135688999999643211   1    111 


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                          .+.+|++++|+|.++++
T Consensus        89 ----~~~~~~~ilv~d~~~~~  105 (187)
T 3c5c_A           89 ----LNWAHAFLVVYSVDSRQ  105 (187)
T ss_dssp             ----HTTCSEEEEEEETTCHH
T ss_pred             ----HhhCCEEEEEEECCCHH
Confidence                23578889999987653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.88  E-value=2.9e-10  Score=88.19  Aligned_cols=83  Identities=22%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|+|++...........+.+........ +  ..+.+|||||......      .+     ..
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~  101 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT------IT-----SS  101 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC------CS-----CC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH------HH-----HH
Confidence            469999999999999999999986311111112222233233322 2  4789999999532111      00     12


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.+|++++|+|++++
T Consensus       102 ~~~~~d~~i~v~d~~~~  118 (199)
T 3l0i_B          102 YYRGAHGIIVVYDVTDQ  118 (199)
T ss_dssp             --CCCSEEEECC-CCCS
T ss_pred             HhhcCCEEEEEEECCCH
Confidence            23456788888887765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.87  E-value=5.4e-09  Score=80.34  Aligned_cols=79  Identities=15%  Similarity=0.094  Sum_probs=46.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ....+|+++|.+|||||||+|.+++.......... +..........+  ..+.+|||||....   .        +   
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~--------~---   82 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL---Q--------F---   82 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCH---H--------H---
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhh---h--------e---
Confidence            34569999999999999999999987321111121 111111111223  45778999996421   0        1   


Q ss_pred             hccCceeEEEEEEecCCc
Q 029512          168 SYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~  185 (192)
                        .+.+|++++|+|++++
T Consensus        83 --~~~~~~~i~v~d~~~~   98 (184)
T 3ihw_A           83 --AAWVDAVVFVFSLEDE   98 (184)
T ss_dssp             --HHHCSEEEEEEETTCH
T ss_pred             --ecCCCEEEEEEECcCH
Confidence              1235677777776654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.87  E-value=3.1e-09  Score=89.76  Aligned_cols=78  Identities=19%  Similarity=0.203  Sum_probs=49.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|+|++.. .....  +  |.....   ...+..+.||||||-..      ....+..+     
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~~-~~~~~--p--T~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~-----  229 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLGE-IVTTI--P--TIGFNVETVEYKNISFTVWDVGGQDK------IRPLWRHY-----  229 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSSC-CEEEE--E--ETTEEEEEEEETTEEEEEEECC-----------CCSHHHH-----
T ss_pred             ceEEEECCCCccHHHHHHHHhCCC-CCCcc--c--ccceEEEEEecCcEEEEEEECCCCHh------HHHHHHHH-----
Confidence            489999999999999999999873 22222  2  322222   22467899999999322      11112222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|+|+++++
T Consensus       230 ~~~ad~vilV~D~~~~~  246 (329)
T 3o47_A          230 FQNTQGLIFVVDSNDRE  246 (329)
T ss_dssp             HTTEEEEEEEEETTCSS
T ss_pred             hccCCEEEEEEECCchH
Confidence            24689999999997653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.87  E-value=1e-09  Score=85.27  Aligned_cols=84  Identities=14%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|||||||+|+|++...  .....++++.+   ......+  ..+.+|||||....  ...   .+..+ 
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--~~~---~~~~~-   93 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA--GGW---LRDHC-   93 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG--GHH---HHHHH-
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc--hhh---hHHHh-
Confidence            456999999999999999999986531  11222333322   2222222  45788999997431  111   12222 


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                          .+.+|++++|+|.++++
T Consensus        94 ----~~~~d~~ilv~d~~~~~  110 (195)
T 3cbq_A           94 ----LQTGDAFLIVFSVTDRR  110 (195)
T ss_dssp             ----HHHCSEEEEEEETTCHH
T ss_pred             ----hccCCEEEEEEECCCHH
Confidence                13578999999987653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.86  E-value=1.1e-08  Score=78.09  Aligned_cols=82  Identities=17%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecC-------CCCceeEEEEEee--------CCeEEEEECCCCCCCCChH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKE  155 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-------~~g~T~~~~~~~~--------~~~~~lvDtPG~~~~~~~~  155 (192)
                      ...+|+++|.+|||||||+|.|.+... .....       ....|....+...        ...+.+|||||...-.   
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---   88 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---   88 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence            346999999999999999999998631 11111       1122333222211        2368999999964311   


Q ss_pred             HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          156 EVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                         ..+..+     .+.+|++++|+|+++
T Consensus        89 ---~~~~~~-----~~~~d~~i~v~D~~~  109 (198)
T 3t1o_A           89 ---ASRKLI-----LRGVDGIVFVADSAP  109 (198)
T ss_dssp             ---HHHHHH-----TTTCCEEEEEEECCG
T ss_pred             ---HHHHHH-----HhcCCEEEEEEECCc
Confidence               122222     357899999999984

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.84  E-value=1.8e-09  Score=98.44  Aligned_cols=83  Identities=17%  Similarity=0.162  Sum_probs=58.2

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecC------------------------------CCCceeEEE---EEee
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------------------------------KPGLTQTIN---FFKL  136 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~------------------------------~~g~T~~~~---~~~~  136 (192)
                      ....+|+++|.+|+|||||+|+|++... .....                              .+|+|.+..   +...
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSS-CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcC-CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            3467999999999999999999997631 11110                              246676643   2334


Q ss_pred             CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +..+.||||||...      .   ...+  +.....+|++++|+|++.
T Consensus       244 ~~~~~iiDTPG~e~------f---~~~~--~~~~~~aD~~llVVDa~~  280 (611)
T 3izq_1          244 RANFTIVDAPGHRD------F---VPNA--IMGISQADMAILCVDCST  280 (611)
T ss_dssp             SCEEEEEECCSSSC------H---HHHH--TTTSSCCSEEEEEEECSH
T ss_pred             CceEEEEECCCCcc------c---HHHH--HHHHhhcCceEEEEECCC
Confidence            67899999999743      1   1111  455677999999999976

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.83  E-value=1e-08  Score=85.00  Aligned_cols=81  Identities=15%  Similarity=-0.019  Sum_probs=53.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCC--eEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGT--KLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~--~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|+|||||+|.+++..   ......+++.+...   ...+.  .+.+|||||.....      ..+     
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~-----  220 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD------RLR-----  220 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT------TTG-----
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCC---CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh------HHH-----
Confidence            4699999999999999999999863   23334444443321   12233  45599999964211      011     


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ....+.+|++++|+|++++.
T Consensus       221 ~~~~~~~d~~i~v~d~~~~~  240 (332)
T 2wkq_A          221 PLSYPQTDVFLICFSLVSPA  240 (332)
T ss_dssp             GGGCTTCSEEEEEEETTCHH
T ss_pred             HHhccCCCEEEEEEeCCCHH
Confidence            22346789999999987753

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.83  E-value=2.5e-09  Score=97.09  Aligned_cols=60  Identities=27%  Similarity=0.315  Sum_probs=42.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCce-eecCC-CCceeEEEEE------eeCCeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDK-PGLTQTINFF------KLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~-~~~~~-~g~T~~~~~~------~~~~~~~lvDtPG~~~~  151 (192)
                      +...|+++|.||+|||||+|+|+|.. .+ .++.. .++|+.....      ..+..+.|+||||++..
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~-~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKK-KGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS-SCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCC-CccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            45689999999999999999999974 22 22222 2445544322      13678999999999863

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.32  E-value=4.3e-10  Score=87.43  Aligned_cols=82  Identities=12%  Similarity=-0.038  Sum_probs=50.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|||||||+|+|++..   .......++.+..   ...  ....+.+|||||....      ...+..  
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~--   97 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY------DRLRPL--   97 (204)
Confidence            45799999999999999999999763   1222222222211   111  2345669999995321      111211  


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                         ..+.+|++++|+|++++.
T Consensus        98 ---~~~~~d~iilv~D~~~~~  115 (204)
T 3th5_A           98 ---SYPQTDVFLICFSLVSPA  115 (204)
Confidence               234678899999987654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.80  E-value=4.7e-09  Score=92.94  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=54.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC-----------------------------ceeecCCCCceeEEEEE---eeCCe
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFF---KLGTK  139 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~-----------------------------~~~~~~~~g~T~~~~~~---~~~~~  139 (192)
                      ..+|+++|.+|+|||||+|+|++...                             ........|+|.+....   ..+..
T Consensus        33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~  112 (483)
T 3p26_A           33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN  112 (483)
T ss_dssp             EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence            46999999999999999999986511                             01111234666654332   24678


Q ss_pred             EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      +.||||||...      ....+     ......+|++++|+|++..
T Consensus       113 ~~iiDTPG~~~------f~~~~-----~~~~~~aD~~llVvDa~~g  147 (483)
T 3p26_A          113 FTIVDAPGHRD------FVPNA-----IMGISQADMAILCVDCSTN  147 (483)
T ss_dssp             EEEECCCCCGG------GHHHH-----HHHHTTCSEEEEEEECCC-
T ss_pred             EEEEECCCcHH------HHHHH-----HHhhhhCCEEEEEEECCCC
Confidence            99999999732      11111     2234568999999999874

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.78  E-value=5.5e-09  Score=91.19  Aligned_cols=85  Identities=20%  Similarity=0.260  Sum_probs=59.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--e--CCeEEEEECCCCCCCCCh-HHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGFAYAK-EEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~lvDtPG~~~~~~~-~~~~~~~~~~~~  166 (192)
                      ...|+|+|++|||||||+|+|++..  ..+++.+++|..+....  .  ...+.++||||+...... ..+...+     
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f-----  229 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF-----  229 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH-----
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH-----
Confidence            4579999999999999999999974  45677888877655332  2  267999999998642110 0011111     


Q ss_pred             hhccCceeEEEEEEecC
Q 029512          167 ISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s  183 (192)
                      +.+...++.+++++|++
T Consensus       230 l~~~era~~lL~vvDls  246 (416)
T 1udx_A          230 LRHIARTRVLLYVLDAA  246 (416)
T ss_dssp             HHHHTSSSEEEEEEETT
T ss_pred             HHHHHHHHhhhEEeCCc
Confidence            23345678999999986

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.76  E-value=3e-08  Score=76.80  Aligned_cols=57  Identities=26%  Similarity=0.318  Sum_probs=36.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eC--CeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~--~~~~lvDtPG~  148 (192)
                      ..+|+++|++|||||||+|.|++........+..+.+....... .+  ..+.+|||||.
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~   64 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ   64 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence            35899999999999999999999732111122223322222222 23  35778999994

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.75  E-value=2.5e-08  Score=86.42  Aligned_cols=84  Identities=20%  Similarity=0.321  Sum_probs=53.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccC-ceeecCCCCceeEEEEEe--------------------------eCCeEEEE
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLCLV  143 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~-~~~~~~~~g~T~~~~~~~--------------------------~~~~~~lv  143 (192)
                      ...+|+++|.+|+|||||+|+|++... .......+|.|.+..+..                          ....+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            457999999999999999999997531 011122345566433211                          01579999


Q ss_pred             ECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       144 DtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ||||.      +....   .+  +.....+|++++|+|+++.
T Consensus        87 DtPGh------~~f~~---~~--~~~~~~~D~~ilVvda~~g  117 (408)
T 1s0u_A           87 DSPGH------ETLMA---TM--LSGASLMDGAILVIAANEP  117 (408)
T ss_dssp             ECSSH------HHHHH---HH--HTTCSCCSEEEEEEETTSC
T ss_pred             ECCCH------HHHHH---HH--HHhHhhCCEEEEEEECCCC
Confidence            99993      22111   12  4556788999999999853

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.75  E-value=1.3e-09  Score=97.92  Aligned_cols=81  Identities=22%  Similarity=0.315  Sum_probs=57.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..|+|+++|.+|+|||||+|+|++..  ......+|+|++...+.    .+..+.+|||||...-..          +. 
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~--~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~----------~~-   69 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQ--VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA----------MR-   69 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHH--HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT----------SB-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH----------HH-
Confidence            45799999999999999999999873  22335667887764332    356899999999532110          00 


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                      ......+|++++|+|+++
T Consensus        70 ~~~~~~aD~vILVVDa~d   87 (537)
T 3izy_P           70 ARGTQVTDIVILVVAADD   87 (537)
T ss_dssp             BSSSBSBSSCEEECBSSS
T ss_pred             HHHHccCCEEEEEEECCC
Confidence            234466889999999876

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.75  E-value=1.6e-08  Score=87.70  Aligned_cols=83  Identities=20%  Similarity=0.340  Sum_probs=54.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc-eeecCCCCceeEEEEEe--------------------------eCCeEEEE
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFK--------------------------LGTKLCLV  143 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-~~~~~~~g~T~~~~~~~--------------------------~~~~~~lv  143 (192)
                      ...+|+++|.+|+|||||+|+|++.... ......+|.|.+..+..                          ....+.+|
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            4568999999999999999999975310 11112345665433211                          01579999


Q ss_pred             ECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       144 DtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ||||.      +...   ..+  +.....+|.+++|+|+++
T Consensus        89 DtPGh------~~f~---~~~--~~~~~~~D~~ilVvda~~  118 (410)
T 1kk1_A           89 DAPGH------EALM---TTM--LAGASLMDGAILVIAANE  118 (410)
T ss_dssp             ECSSH------HHHH---HHH--HHCGGGCSEEEEEEETTS
T ss_pred             ECCCh------HHHH---HHH--HhhhhhCCEEEEEEECCC
Confidence            99993      2111   122  445567899999999985

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.73  E-value=6e-08  Score=74.84  Aligned_cols=58  Identities=26%  Similarity=0.322  Sum_probs=37.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eCC--eEEEEECCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGT--KLCLVDLPGYG  149 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~~--~~~lvDtPG~~  149 (192)
                      ..+|+++|++|||||||+|.|++........+..+.+....... .+.  .+.++||||..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~   89 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE   89 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCc
Confidence            46899999999999999999999742112222223222222222 233  45679999964

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.72  E-value=2e-08  Score=90.15  Aligned_cols=83  Identities=18%  Similarity=0.173  Sum_probs=53.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCce--------------eecC------CCCcee---EEEEEeeCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPGLTQ---TINFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~--------------~~~~------~~g~T~---~~~~~~~~~~~~lvDtPG~  148 (192)
                      .++|+|+|.+|+|||||+|+|+......              .+.+      ..|+|.   ...+...+..+.||||||.
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~   92 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH   92 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence            4599999999999999999997321000              0000      123332   2334445788999999997


Q ss_pred             CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .+-. .+     +     ....+.+|++++|+|++..
T Consensus        93 ~df~-~~-----~-----~~~l~~aD~allVvDa~~g  118 (528)
T 3tr5_A           93 ADFT-ED-----T-----YRTLTAVDSALMVIDAAKG  118 (528)
T ss_dssp             TTCC-HH-----H-----HHGGGGCSEEEEEEETTTC
T ss_pred             hhHH-HH-----H-----HHHHHhCCEEEEEEeCCCC
Confidence            5421 11     1     2234578999999999763

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.72  E-value=1.4e-08  Score=87.83  Aligned_cols=84  Identities=14%  Similarity=0.219  Sum_probs=51.0

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCcee--------------EEEE--------EeeCCeEEEEECCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--------------TINF--------FKLGTKLCLVDLPG  147 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~--------------~~~~--------~~~~~~~~lvDtPG  147 (192)
                      ....+|+++|.+|+|||||+|+|++.. ..........|.              +...        ......+.++||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            456799999999999999999999842 111001101110              0000        00125789999999


Q ss_pred             CCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          148 YGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ...      ....+     +.....+|++++|+|++..
T Consensus        85 h~~------~~~~~-----~~~~~~~D~~ilVvda~~~  111 (403)
T 3sjy_A           85 HEV------LMATM-----LSGAALMDGAILVVAANEP  111 (403)
T ss_dssp             CGG------GHHHH-----HHHHTTCSEEEEEEETTSC
T ss_pred             cHH------HHHHH-----HHHHhhCCEEEEEEECCCC
Confidence            421      11111     2334568999999999875

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.71  E-value=4.6e-09  Score=93.71  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=57.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      ..++|+++|.+|+|||||+++|++..  ...+..+|.|++...+.   .+..+.+|||||...-...      +     .
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~------~-----~   69 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTK--VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM------R-----A   69 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHH--HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS------B-----C
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCC--CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH------H-----H
Confidence            46799999999999999999999863  22334456776653322   3678999999996431110      0     2


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                      .....+|.+++|+|+.+
T Consensus        70 ~~~~~aD~aILVVda~~   86 (501)
T 1zo1_I           70 RGAQATDIVVLVVAADD   86 (501)
T ss_dssp             SSSBSCSSEEEEEETTT
T ss_pred             HHHhhCCEEEEEeeccc
Confidence            34567899999999876

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.71  E-value=1.6e-08  Score=89.65  Aligned_cols=82  Identities=22%  Similarity=0.258  Sum_probs=50.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC---c--eeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG---V--VRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~---~--~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~  163 (192)
                      .++|+++|.+|+|||||+|+|++...   .  ......+|.|.+..+   ...+..+.+|||||.      +.....+  
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh------~~~~~~~--   90 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH------ADLIRAV--   90 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH------HHHHHHH--
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh------HHHHHHH--
Confidence            46899999999999999999998631   1  122344567776532   224678999999994      2111111  


Q ss_pred             HHhhhccCceeEEEEEEecCC
Q 029512          164 LVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       164 ~~~l~~~~~~~~v~~vvD~s~  184 (192)
                         ......+|++++|+|+++
T Consensus        91 ---~~~~~~aD~~ilVvda~~  108 (482)
T 1wb1_A           91 ---VSAADIIDLALIVVDAKE  108 (482)
T ss_dssp             ---HHHTTSCCEEEEEEETTT
T ss_pred             ---HHHHhhCCEEEEEEecCC
Confidence               344567899999999976

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.70  E-value=1.8e-08  Score=80.21  Aligned_cols=83  Identities=16%  Similarity=0.070  Sum_probs=46.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||++.++.........++.|..........   ...+.||||+|-..-.      ..+..+    
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~------~l~~~~----   82 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR------SLIPSY----   82 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG------GGHHHH----
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh------hHHHHH----
Confidence            458999999999999999999976321222222232211122222   3467899999953211      111111    


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                       .+.++++++|.|...+
T Consensus        83 -~~~a~~~ilv~di~~~   98 (216)
T 4dkx_A           83 -IRDSAAAVVVYDITNV   98 (216)
T ss_dssp             -HTTCSEEEEEEETTCH
T ss_pred             -hccccEEEEEeecchh
Confidence             2456778888877654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.70  E-value=1e-09  Score=99.78  Aligned_cols=82  Identities=16%  Similarity=0.125  Sum_probs=38.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceee------------------------------cCCCCceeEEEEEe---eC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---LG  137 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~------------------------------~~~~g~T~~~~~~~---~~  137 (192)
                      ...+|+++|.+|+|||||+|+|++... ...                              ...+|+|.+.....   .+
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELG-EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHH-CC--------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcC-CcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            445899999999999999999975310 010                              01356777765433   35


Q ss_pred             CeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       138 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ..+.||||||...-...     .      +.....+|++++|+|++.
T Consensus       255 ~~i~iiDTPGh~~f~~~-----~------~~~~~~aD~alLVVDa~~  290 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISG-----M------IAGASSADFAVLVVDSSQ  290 (592)
T ss_dssp             ----CCEEESSSEEEEE-----C------CC-------CCSEEEEEE
T ss_pred             eEEEEEECCChHHHHHH-----H------HHHHhhCCEEEEEEECCC
Confidence            78999999997531100     0      233456789999999875

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.69  E-value=4.7e-08  Score=84.45  Aligned_cols=81  Identities=15%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc---Ccee-----------ecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW---GVVR-----------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKE  155 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~---~~~~-----------~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~  155 (192)
                      .+|+++|.+|+|||||+|+|++..   ....           .....|.|.+.....   .+..+.+|||||..      
T Consensus         4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~------   77 (397)
T 1d2e_A            4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------   77 (397)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred             EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH------
Confidence            589999999999999999999741   0000           011346676654322   35789999999952      


Q ss_pred             HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          156 EVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ....   .+  ......+|++++|+|+++
T Consensus        78 ~f~~---~~--~~~~~~aD~~ilVvda~~  101 (397)
T 1d2e_A           78 DYVK---NM--ITGTAPLDGCILVVAAND  101 (397)
T ss_dssp             HHHH---HH--HHTSSCCSEEEEEEETTT
T ss_pred             HHHH---HH--HhhHhhCCEEEEEEECCC
Confidence            1111   11  344568899999999986

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.67  E-value=3.3e-08  Score=86.34  Aligned_cols=83  Identities=19%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCc---------eeecCC----------------------CCceeEEEEEe---eC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDK----------------------PGLTQTINFFK---LG  137 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~---------~~~~~~----------------------~g~T~~~~~~~---~~  137 (192)
                      ..+|+++|.+|+|||||+|+|++....         ...+..                      .|.|.+..+..   .+
T Consensus        24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~  103 (434)
T 1zun_B           24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK  103 (434)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred             ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence            468999999999999999999875310         111111                      23444433222   35


Q ss_pred             CeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       138 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.+|||||...      ....+     ......+|++++|+|+++.
T Consensus       104 ~~~~iiDtpGh~~------f~~~~-----~~~~~~aD~~ilVvDa~~g  140 (434)
T 1zun_B          104 RKFIIADTPGHEQ------YTRNM-----ATGASTCDLAIILVDARYG  140 (434)
T ss_dssp             EEEEEEECCCSGG------GHHHH-----HHHHTTCSEEEEEEETTTC
T ss_pred             ceEEEEECCChHH------HHHHH-----HHHHhhCCEEEEEEECCCC
Confidence            6799999999532      11111     1234678999999999763

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.65  E-value=1.1e-08  Score=88.50  Aligned_cols=84  Identities=18%  Similarity=0.127  Sum_probs=54.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc--C-----cee--ec------CCCCceeEEEE---EeeCCeEEEEECCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW--G-----VVR--TS------DKPGLTQTINF---FKLGTKLCLVDLPGYGFAY  152 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~--~-----~~~--~~------~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~  152 (192)
                      ...+|+++|.+|+|||||+|+|++..  .     ...  ..      ...|.|.+...   ...+..+.+|||||...  
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~--   87 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD--   87 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence            34699999999999999999999831  0     000  00      12355554332   22367899999999642  


Q ss_pred             ChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          153 AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                         .....      ......+|++++|+|+++.
T Consensus        88 ---f~~~~------~~~~~~aD~~ilVvda~~g  111 (405)
T 2c78_A           88 ---YIKNM------ITGAAQMDGAILVVSAADG  111 (405)
T ss_dssp             ---GHHHH------HHHHTTCSSEEEEEETTTC
T ss_pred             ---HHHHH------HHHHHHCCEEEEEEECCCC
Confidence               11111      2234578999999999764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.63  E-value=7.4e-08  Score=76.33  Aligned_cols=83  Identities=18%  Similarity=0.117  Sum_probs=48.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCC--CCcee-EEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK--PGLTQ-TINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~--~g~T~-~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|||||||+|++++.. ...+...  .|.+. .......+  ..+.++||+|...    .  ..   .+ .
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~-~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~----~--~~---~l-~  105 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG----E--NE---WL-H  105 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH----H--HH---HH-H
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc----h--hh---hH-H
Confidence            4689999999999999999999752 1222222  23222 21222223  3467899998431    0  11   11 1


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                      -...+.++++++|.|.+++
T Consensus       106 ~~~~~~a~~~ilVydvt~~  124 (211)
T 2g3y_A          106 DHCMQVGDAYLIVYSITDR  124 (211)
T ss_dssp             HCCCCCCSEEEEEEETTCH
T ss_pred             HHHHhhCCEEEEEEECCCH
Confidence            1223556788888887654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.62  E-value=2.3e-08  Score=77.42  Aligned_cols=57  Identities=21%  Similarity=0.254  Sum_probs=34.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC--Ccee-EEEEEeeCC--eEEEEECCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQ-TINFFKLGT--KLCLVDLPGYG  149 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~--g~T~-~~~~~~~~~--~~~lvDtPG~~  149 (192)
                      ..+|+++|.+|||||||+|++++.. ...++..+  |.+. .......+.  .+.++||+|..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~   67 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK   67 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS-CCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCc-CCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence            4689999999999999999999752 22233222  2222 222222233  46789999953

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.61  E-value=2.4e-08  Score=87.95  Aligned_cols=82  Identities=22%  Similarity=0.272  Sum_probs=54.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC-ce----------------------eecC------CCCceeEEE---EEeeCCe
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG-VV----------------------RTSD------KPGLTQTIN---FFKLGTK  139 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~-~~----------------------~~~~------~~g~T~~~~---~~~~~~~  139 (192)
                      ..+|+++|.+|+|||||+|+|++... +.                      .+.+      ..|.|.+..   +...+..
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~   86 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   86 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence            46899999999999999999986410 00                      0001      245665543   2234678


Q ss_pred             EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +.+|||||...     ...    .+  ......+|++++|+|+++
T Consensus        87 ~~iiDtPGh~~-----f~~----~~--~~~~~~aD~~ilVvda~~  120 (458)
T 1f60_A           87 VTVIDAPGHRD-----FIK----NM--ITGTSQADCAILIIAGGV  120 (458)
T ss_dssp             EEEEECCCCTT-----HHH----HH--HHSSSCCSEEEEEEECSH
T ss_pred             EEEEECCCcHH-----HHH----HH--HhhhhhCCEEEEEEeCCc
Confidence            99999999542     111    11  345678899999999975

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.61  E-value=1.7e-07  Score=81.91  Aligned_cols=62  Identities=24%  Similarity=0.321  Sum_probs=39.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCc--eeecCCCCceeEEEEE-ee----CCeEEEEECCCCCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINFF-KL----GTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~--~~~~~~~g~T~~~~~~-~~----~~~~~lvDtPG~~~~~~  153 (192)
                      .++++|+|++|+|||||+|.|+|..-.  ......++.++....+ ..    ...+.++|+||++....
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~  110 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQIN  110 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccc
Confidence            345999999999999999999997311  1112234555543221 11    13689999999987543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.60  E-value=1.7e-08  Score=88.21  Aligned_cols=83  Identities=14%  Similarity=0.178  Sum_probs=50.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc-Ccee----------------------------ecCCCCceeEEEEE---eeCCe
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW-GVVR----------------------------TSDKPGLTQTINFF---KLGTK  139 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~-~~~~----------------------------~~~~~g~T~~~~~~---~~~~~  139 (192)
                      ..+|+++|.+|+|||||+|+|++.. ....                            .....|.|.+....   ..+..
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~   85 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   85 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence            4689999999999999999998641 0000                            00135677765432   24678


Q ss_pred             EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      +.+|||||...      ....   +  ......+|++++|+|+++.
T Consensus        86 ~~iiDtpG~~~------f~~~---~--~~~~~~aD~~ilVvDa~~g  120 (435)
T 1jny_A           86 FTIIDAPGHRD------FVKN---M--ITGASQADAAILVVSAKKG  120 (435)
T ss_dssp             EEECCCSSSTT------HHHH---H--HHTSSCCSEEEEEEECSTT
T ss_pred             EEEEECCCcHH------HHHH---H--HhhhhhcCEEEEEEECCCC
Confidence            99999999653      1111   1  3345788999999999863

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.60  E-value=3e-08  Score=90.15  Aligned_cols=80  Identities=21%  Similarity=0.264  Sum_probs=51.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-CceeEE--EEEee-------------------CCeEEEEECCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTI--NFFKL-------------------GTKLCLVDLPGY  148 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-g~T~~~--~~~~~-------------------~~~~~lvDtPG~  148 (192)
                      ..++|+++|++|+|||||+|+|++.. .  ....+ |.|++.  .+...                   ...+.+|||||.
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~-v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh   80 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSA-V--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH   80 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH-H--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccc-C--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence            35799999999999999999999862 1  22222 444432  11110                   125999999996


Q ss_pred             CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ..-..          +. -...+.+|++++|+|+++
T Consensus        81 e~F~~----------~~-~r~~~~aD~aILVvDa~~  105 (594)
T 1g7s_A           81 EAFTT----------LR-KRGGALADLAILIVDINE  105 (594)
T ss_dssp             SCCTT----------SB-CSSSBSCSEEEEEEETTT
T ss_pred             HHHHH----------HH-HHHHhhCCEEEEEEECCC
Confidence            43111          00 123456899999999987

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.59  E-value=4.4e-08  Score=87.62  Aligned_cols=85  Identities=16%  Similarity=0.088  Sum_probs=49.1

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--------Ee---eCCeEEEEECCCCCCCCChHHHH
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--------FK---LGTKLCLVDLPGYGFAYAKEEVK  158 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--------~~---~~~~~~lvDtPG~~~~~~~~~~~  158 (192)
                      ....+|+++|.+|||||||+|+|++........++.|.+.....        ..   .+..+.++||||......     
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~-----  113 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA-----  113 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-----
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-----
Confidence            34579999999999999999999987321222222232222111        01   146799999999432111     


Q ss_pred             HHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          159 DAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                       ....++     +.+|++++|+|++..
T Consensus       114 -~~~~~l-----~~~d~ii~V~D~s~~  134 (535)
T 3dpu_A          114 -SHQFFM-----TRSSVYMLLLDSRTD  134 (535)
T ss_dssp             -TCHHHH-----HSSEEEEEEECGGGG
T ss_pred             -HHHHHc-----cCCcEEEEEEeCCCc
Confidence             111121     247999999998754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.59  E-value=5.2e-08  Score=83.31  Aligned_cols=59  Identities=31%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCC------CCceeEEEEEe-----eC--CeEEEEECCCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTINFFK-----LG--TKLCLVDLPGYGFA  151 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~------~g~T~~~~~~~-----~~--~~~~lvDtPG~~~~  151 (192)
                      ..+|+++|.+|+|||||+|+|++... ......      ...|.......     .+  ..+.+|||||+++.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~-~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~  108 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDL-YPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA  108 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC----------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCC-CCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence            45899999999999999999987631 211111      11232222111     12  36899999999764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.58  E-value=9.5e-08  Score=80.95  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=50.4

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc-----CceeecCCCCceeEE------------------EEE------------
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTI------------------NFF------------  134 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~~~g~T~~~------------------~~~------------  134 (192)
                      .....|+++|++|+|||||+|.|++..     .+..++..+++|..-                  .+.            
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~  133 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  133 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence            346789999999999999999997531     233333333332210                  000            


Q ss_pred             ------------eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512          135 ------------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       135 ------------~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                                  ..+..+.|+||||+...   ..      .+     ...+|.+++|+|++..+
T Consensus       134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~---~~------~~-----~~~aD~vl~Vvd~~~~~  183 (341)
T 2p67_A          134 SQRARELMLLCEAAGYDVVIVETVGVGQS---ET------EV-----ARMVDCFISLQIAGGGD  183 (341)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTH---HH------HH-----HTTCSEEEEEECC----
T ss_pred             HHHHHHHHHHhhccCCCEEEEeCCCccch---HH------HH-----HHhCCEEEEEEeCCccH
Confidence                        12578999999998742   11      01     25789999999987554

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.57  E-value=2.7e-08  Score=85.43  Aligned_cols=67  Identities=24%  Similarity=0.413  Sum_probs=46.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|+|||||+|+|+..          |.|.+..+.   ..+..+.+|||||..+-     ....      +...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f-----~~~~------~~~~   81 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKT-----LKSL------ITAL   81 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTC-----HHHH------HHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHH-----HHHH------HHHH
Confidence            8999999999999999999922          233333222   23678999999997531     1112      1223


Q ss_pred             CceeEEEEEEe
Q 029512          171 NFWSCTCFLIY  181 (192)
Q Consensus       171 ~~~~~v~~vvD  181 (192)
                      +.+|++++|+|
T Consensus        82 ~~aD~ailVvd   92 (370)
T 2elf_A           82 NISDIAVLCIP   92 (370)
T ss_dssp             HTCSEEEEEEC
T ss_pred             HHCCEEEEEEc
Confidence            56899999999

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.56  E-value=5.8e-08  Score=82.31  Aligned_cols=24  Identities=29%  Similarity=0.464  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ....++|+|++|+|||||+|.|++
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999985

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.56  E-value=1.5e-07  Score=84.45  Aligned_cols=83  Identities=17%  Similarity=0.152  Sum_probs=51.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC-ce-------------eecC------CCCceeE---EEEEeeCCeEEEEECCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG-VV-------------RTSD------KPGLTQT---INFFKLGTKLCLVDLPGY  148 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~-~~-------------~~~~------~~g~T~~---~~~~~~~~~~~lvDtPG~  148 (192)
                      ..+|+++|.+|+|||||+|+|++... ..             .+.+      ..|.|..   ..+...+..+.||||||.
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~   92 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH   92 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence            35899999999999999999997421 10             0011      2233322   223335788999999997


Q ss_pred             CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .+-. .     .+     ....+.+|++++|+|++..
T Consensus        93 ~df~-~-----~~-----~~~l~~aD~~IlVvDa~~g  118 (529)
T 2h5e_A           93 EDFS-E-----DT-----YRTLTAVDCCLMVIDAAKG  118 (529)
T ss_dssp             TTCC-H-----HH-----HHGGGGCSEEEEEEETTTC
T ss_pred             hhHH-H-----HH-----HHHHHHCCEEEEEEeCCcc
Confidence            5411 1     11     1223568999999999763

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.54  E-value=4.2e-08  Score=90.63  Aligned_cols=85  Identities=18%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccC-c---eee------cC------CCCceeEEE---EEeeCCeEEEEECCCCCC
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-V---VRT------SD------KPGLTQTIN---FFKLGTKLCLVDLPGYGF  150 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~-~---~~~------~~------~~g~T~~~~---~~~~~~~~~lvDtPG~~~  150 (192)
                      ....+|+++|.+|+|||||+|+|++... .   ..+      .+      ..++|....   ....+..+.||||||..+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            3456999999999999999999995311 0   001      11      233443322   223477899999999864


Q ss_pred             CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      -. .+     +...     .+.+|++++|+|++..
T Consensus        88 f~-~~-----~~~~-----l~~aD~~llVvDa~~g  111 (693)
T 2xex_A           88 FT-VE-----VERS-----LRVLDGAVTVLDAQSG  111 (693)
T ss_dssp             CC-HH-----HHHH-----HHHCSEEEEEEETTTB
T ss_pred             hH-HH-----HHHH-----HHHCCEEEEEECCCCC
Confidence            21 11     1111     1347999999999763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.54  E-value=2.2e-07  Score=79.08  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..+.|+++|.+|+|||||+|.|+.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999999999999974

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.49  E-value=7.8e-07  Score=79.36  Aligned_cols=89  Identities=15%  Similarity=0.170  Sum_probs=52.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHh------hccCceeecCCC---Cc--------ee-EEEEEe-----------------
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKP---GL--------TQ-TINFFK-----------------  135 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~------~~~~~~~~~~~~---g~--------T~-~~~~~~-----------------  135 (192)
                      ....|+++|.+||||||+++.|+      |. ++..++.-+   +.        ++ ....+.                 
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            34589999999999999999999      54 333333211   00        00 000000                 


Q ss_pred             ---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       136 ---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                         .+..+.||||||....  .+.+......+.+   ....|.+++|+|+...
T Consensus       179 ~~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~---~i~pd~vllVvDa~~g  226 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQ--EDSLFEEMLQVAN---AIQPDNIVYVMDASIG  226 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTT--CHHHHHHHHHHHH---HHCCSEEEEEEETTCC
T ss_pred             HHHCCCcEEEEeCCCCccc--chhHHHHHHHHHh---hhcCceEEEEEecccc
Confidence               3568999999998652  2222222222222   1256889999998753

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.48  E-value=9.8e-08  Score=84.24  Aligned_cols=83  Identities=19%  Similarity=0.163  Sum_probs=46.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCc-----------------------eeecC------CCCceeEEEE---EeeCCe
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------VRTSD------KPGLTQTINF---FKLGTK  139 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~-----------------------~~~~~------~~g~T~~~~~---~~~~~~  139 (192)
                      ..+|+++|.+|+|||||+|+|+.....                       +.+.+      ..|.|.+...   ...+..
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~  122 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  122 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence            468999999999999999999753110                       00111      2456666542   223678


Q ss_pred             EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      +.+|||||...-      ..   .+  ......+|++++|+|+++.
T Consensus       123 ~~iiDtPGh~~f------~~---~~--~~~~~~aD~~ilVvDa~~g  157 (467)
T 1r5b_A          123 FSLLDAPGHKGY------VT---NM--INGASQADIGVLVISARRG  157 (467)
T ss_dssp             EEECCCCC----------------------TTSCSEEEEEEECSTT
T ss_pred             EEEEECCCcHHH------HH---HH--HhhcccCCEEEEEEeCCcC
Confidence            999999996321      11   11  3345678999999999764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.43  E-value=6e-08  Score=81.44  Aligned_cols=58  Identities=33%  Similarity=0.525  Sum_probs=36.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-------CceeEEEEEeeCCeEEEEECCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF  150 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-------g~T~~~~~~~~~~~~~lvDtPG~~~  150 (192)
                      .+..++++|++|||||||+|+|.+... ..++...       ++|+........ ...++||||+..
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~  236 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS  236 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence            356899999999999999999998632 2222222       455544444443 458999999865

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.40  E-value=4.3e-07  Score=83.86  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccC-c---eeec------C------CCCceeEEE---EEeeCCeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWG-V---VRTS------D------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~-~---~~~~------~------~~g~T~~~~---~~~~~~~~~lvDtPG~~~~  151 (192)
                      ...+|+++|.+|+|||||+|+|+.... .   ..+.      +      ..+.|....   ....+..+.||||||..+-
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   90 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF   90 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence            346899999999999999999984311 0   0111      1      224443322   2234778999999997531


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                        .    ..+...     .+.+|++++|+|++..
T Consensus        91 --~----~~~~~~-----l~~aD~~ilVvDa~~g  113 (691)
T 1dar_A           91 --T----IEVERS-----MRVLDGAIVVFDSSQG  113 (691)
T ss_dssp             --H----HHHHHH-----HHHCSEEEEEEETTTC
T ss_pred             --H----HHHHHH-----HHHCCEEEEEEECCCC
Confidence              1    112111     2347999999999764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.38  E-value=8.8e-07  Score=85.66  Aligned_cols=84  Identities=14%  Similarity=0.154  Sum_probs=52.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc---C------ce-----eecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW---G------VV-----RTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~---~------~~-----~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~  153 (192)
                      ...+|+++|.+|+|||||+|+|++..   .      ..     ......|.|.+..   +...+..+.+|||||..    
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe----  370 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA----  370 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH----
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH----
Confidence            45689999999999999999999741   0      00     0012345565432   22246789999999942    


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                        ...   ..+  ......+|++++|+|+++.
T Consensus       371 --dF~---~~m--i~gas~AD~aILVVDAtdG  395 (1289)
T 3avx_A          371 --DYV---KNM--ITGAAQMDGAILVVAATDG  395 (1289)
T ss_dssp             --HHH---HHH--HHTSCCCSEEEEEEETTTC
T ss_pred             --HHH---HHH--HHHHhhCCEEEEEEcCCcc
Confidence              111   111  3456789999999999763

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.38  E-value=1.1e-06  Score=81.32  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=53.3

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccC-ce---ee------cC------CCCceeEEEEE---eeC-------CeEEEE
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VV---RT------SD------KPGLTQTINFF---KLG-------TKLCLV  143 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~-~~---~~------~~------~~g~T~~~~~~---~~~-------~~~~lv  143 (192)
                      ....+|+++|..|+|||||+++|+.... ..   .+      .+      ..|.|......   +.+       ..+.||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            3467999999999999999999975311 00   11      11      23455543322   223       789999


Q ss_pred             ECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       144 DtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ||||..+-      ...+..     ..+.+|++++|+|++..
T Consensus        88 DTPG~~df------~~~~~~-----~l~~aD~aIlVvDa~~g  118 (704)
T 2rdo_7           88 DTPGHVDF------TIEVER-----SMRVLDGAVMVYCAVGG  118 (704)
T ss_pred             eCCCccch------HHHHHH-----HHHHCCEEEEEEeCCCC
Confidence            99997531      111111     12357999999998753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.35  E-value=3.7e-07  Score=85.98  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=51.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecC---------------CCCceeEE---EEEee----------------C
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTI---NFFKL----------------G  137 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~---------------~~g~T~~~---~~~~~----------------~  137 (192)
                      ..+|+++|.+|+|||||+|+|++... .....               ..|.|...   ...+.                +
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAG-IISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHB-CCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            35899999999999999999997521 11111               12223211   11111                5


Q ss_pred             CeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          138 TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       138 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      ..+.||||||..+-. .     .+...     .+.+|++++|+|+...
T Consensus        98 ~~i~liDTPG~~df~-~-----~~~~~-----l~~aD~ailVvDa~~g  134 (842)
T 1n0u_A           98 FLINLIDSPGHVDFS-S-----EVTAA-----LRVTDGALVVVDTIEG  134 (842)
T ss_dssp             EEEEEECCCCCCSSC-H-----HHHHH-----HHTCSEEEEEEETTTB
T ss_pred             ceEEEEECcCchhhH-H-----HHHHH-----HHhCCEEEEEEeCCCC
Confidence            679999999986521 1     12122     2468999999999764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.35  E-value=2.2e-07  Score=76.50  Aligned_cols=59  Identities=29%  Similarity=0.436  Sum_probs=34.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeec------CCCCcee--EEEE----EeeCCeEEEEECCCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS------DKPGLTQ--TINF----FKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~------~~~g~T~--~~~~----~~~~~~~~lvDtPG~~~~  151 (192)
                      ++++++|++|+|||||+|.|+|........      +.+..+.  ...+    ......+.++|+|||+..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~   73 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ   73 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence            479999999999999999999864211110      1111111  1111    112357899999999863

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.34  E-value=4.2e-07  Score=82.69  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=43.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCce-------eec------CCCCceeEEE---EEee-----CCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTIN---FFKL-----GTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~-------~~~------~~~g~T~~~~---~~~~-----~~~~~lvDtPG~~~  150 (192)
                      ..+|+++|.+|+|||||+++|+......       ...      ...|.|....   ..+.     +..+.||||||..+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4589999999999999999998742110       000      1234454432   2121     25789999999743


Q ss_pred             CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      -      ...+...     .+.+|++++|+|++..
T Consensus        84 F------~~ev~~~-----l~~aD~aILVVDa~~g  107 (599)
T 3cb4_D           84 F------SYEVSRS-----LAACEGALLVVDAGQG  107 (599)
T ss_dssp             G------HHHHHHH-----HHHCSEEEEEEETTTC
T ss_pred             H------HHHHHHH-----HHHCCEEEEEEECCCC
Confidence            1      1112221     2347999999999763

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=98.30  E-value=3.2e-07  Score=77.72  Aligned_cols=83  Identities=17%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      +|+++|.+|||||||++.+.+.. ........+.|....+  .....++.+|||||-..-..+. .  .+..+     .+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~-~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~-l--~~~~y-----yr   71 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNM-QPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS-Y--DSERL-----FK   71 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCC-CSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCS-H--HHHHH-----HT
T ss_pred             CEEEECCCCCCHHHHHHHHHcCC-CCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchh-h--hhhhh-----cc
Confidence            58899999999999999887652 1111111222222111  1234789999999964311100 0  01122     25


Q ss_pred             ceeEEEEEEecCCc
Q 029512          172 FWSCTCFLIYIFYT  185 (192)
Q Consensus       172 ~~~~v~~vvD~s~~  185 (192)
                      .++++++|+|+++.
T Consensus        72 ~a~~~IlV~Ditd~   85 (331)
T 3r7w_B           72 SVGALVYVIDSQDE   85 (331)
T ss_dssp             TCSEEEEECCCSSC
T ss_pred             CCCEEEEEEECCch
Confidence            68899999998765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.30  E-value=5.8e-07  Score=81.73  Aligned_cols=83  Identities=20%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCce-------eecC------CCCceeEE---EEEee-----CCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTSD------KPGLTQTI---NFFKL-----GTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~-------~~~~------~~g~T~~~---~~~~~-----~~~~~lvDtPG~~~  150 (192)
                      ..+|+++|.+|+|||||+++|+......       ...+      ..|.|...   ...+.     ...+.||||||..+
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            4589999999999999999998642110       0001      12334321   12111     25788999999753


Q ss_pred             CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512          151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      -      ...+...     ...+|++++|+|++..
T Consensus        86 F------~~ev~r~-----l~~aD~aILVVDa~~g  109 (600)
T 2ywe_A           86 F------SYEVSRA-----LAACEGALLLIDASQG  109 (600)
T ss_dssp             G------HHHHHHH-----HHTCSEEEEEEETTTB
T ss_pred             H------HHHHHHH-----HHhCCEEEEEEECCCC
Confidence            1      1111111     2457999999999764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.30  E-value=5.3e-07  Score=78.67  Aligned_cols=60  Identities=27%  Similarity=0.284  Sum_probs=32.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC----CceeEEEEE-e------eCCeEEEEECCCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP----GLTQTINFF-K------LGTKLCLVDLPGYGFA  151 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~----g~T~~~~~~-~------~~~~~~lvDtPG~~~~  151 (192)
                      ..+|+|+|++|+|||||+|.|+|........+..    ..|...... .      ....+.++||||++..
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~  101 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA  101 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence            4578999999999999999999973211111000    112111111 1      1236899999999764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.27  E-value=1.2e-06  Score=70.98  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             CCCCeEEEEecC---------CCcHHHHHHHHhhc
Q 029512           90 PDLPEIAFAGRS---------NVGKSSMLNALTRQ  115 (192)
Q Consensus        90 ~~~~~i~lvG~~---------n~GKStlin~L~~~  115 (192)
                      ....+|+++|.+         |||||||+|++++.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~   51 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP   51 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence            345699999999         99999999999983

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.24  E-value=1.6e-06  Score=72.29  Aligned_cols=56  Identities=32%  Similarity=0.395  Sum_probs=38.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-------CceeEEEEEeeCCeEEEEECCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG  149 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-------g~T~~~~~~~~~~~~~lvDtPG~~  149 (192)
                      ...++++|++|+|||||+|+|. ... ..++...       .+|+..........-.++||||+.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~  227 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS  227 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence            4588999999999999999999 632 2223222       255554444443345889999985

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.22  E-value=2e-06  Score=75.68  Aligned_cols=25  Identities=24%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +...|+|+|++++|||||+|.|+|.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3458999999999999999999974

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.21  E-value=3.9e-06  Score=77.13  Aligned_cols=83  Identities=20%  Similarity=0.242  Sum_probs=51.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc----eee------cC------CCCce---eEEEEEeeCCeEEEEECCCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLT---QTINFFKLGTKLCLVDLPGYGFA  151 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~----~~~------~~------~~g~T---~~~~~~~~~~~~~lvDtPG~~~~  151 (192)
                      ...+|+++|.+|+|||||+++|++....    ..+      .+      ..+.|   +.......+..+.+|||||..+-
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            3568999999999999999999964211    000      00      01223   33344445788999999996431


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                            ...+...     .+.+|.+++|+|+..
T Consensus        88 ------~~~~~~~-----l~~ad~~ilVvD~~~  109 (665)
T 2dy1_A           88 ------VGEIRGA-----LEAADAALVAVSAEA  109 (665)
T ss_dssp             ------HHHHHHH-----HHHCSEEEEEEETTT
T ss_pred             ------HHHHHHH-----HhhcCcEEEEEcCCc
Confidence                  1112111     235789999999754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.19  E-value=7e-07  Score=76.43  Aligned_cols=58  Identities=34%  Similarity=0.405  Sum_probs=38.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC---C----ceeEEEEEeeCCeEEEEECCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---G----LTQTINFFKLGTKLCLVDLPGYG  149 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~---g----~T~~~~~~~~~~~~~lvDtPG~~  149 (192)
                      +-.++|+|++|||||||+|.|+|......++...   |    +|+....+.......++||||+.
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~  279 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVR  279 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHH
Confidence            3489999999999999999999863202222211   2    44444555555556789999974

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.18  E-value=1.3e-06  Score=72.69  Aligned_cols=58  Identities=28%  Similarity=0.331  Sum_probs=30.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC------CceeEEE---E----EeeCCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTIN---F----FKLGTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~------g~T~~~~---~----~~~~~~~~lvDtPG~~~  150 (192)
                      ..+|+++|++|+|||||+|.|++.. ....+..+      ..|....   .    ......+.++||||++.
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~   88 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTD-LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD   88 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC-ccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence            4588999999999999999999851 12111111      0111111   1    11235789999999964

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.10  E-value=1.4e-06  Score=72.44  Aligned_cols=58  Identities=34%  Similarity=0.402  Sum_probs=36.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCC-------CCceeEEEEEeeCCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-------~g~T~~~~~~~~~~~~~lvDtPG~~~  150 (192)
                      ...++++|++|+|||||+|+|.+... ..++..       ..+|+..........-.++|+||+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~  233 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN  233 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence            45889999999999999999998632 222221       12444333333333458899999754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.09  E-value=3.1e-06  Score=73.76  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeec---CCCCceeEEEEEee--CCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKL--GTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~---~~~g~T~~~~~~~~--~~~~~lvDtPG~~~  150 (192)
                      ...++|+|++|+|||||+|.|+|.......+   +...+|+....+..  ...+.++|+||++.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~  132 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS  132 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccc
Confidence            3489999999999999999999953211111   11112332222222  24689999999875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.07  E-value=4.2e-06  Score=73.28  Aligned_cols=88  Identities=15%  Similarity=0.029  Sum_probs=53.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc-----CceeecCC------------------------CCceeEEEEE-------e
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK------------------------PGLTQTINFF-------K  135 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~~------------------------~g~T~~~~~~-------~  135 (192)
                      ...|+++|.+|+||||+++.|.+..     .+..++.-                        .++|+++...       .
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999999741     22222211                        1123322100       1


Q ss_pred             eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       136 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .+..+.|+||||....  ...   .+..+..+......|.+++|+|+..
T Consensus       179 ~~~D~vIIDT~G~~~~--~~~---l~~~l~~i~~~~~~d~vllVvda~~  222 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE--EKG---LLEEMKQIKEITNPDEIILVIDGTI  222 (432)
T ss_dssp             SSCSEEEEECCCSCSS--HHH---HHHHHHHTTSSSCCSEEEEEEEGGG
T ss_pred             hCCCEEEEcCCCCccc--cHH---HHHHHHHHHHHhcCcceeEEeeccc
Confidence            3568999999997642  222   2233333444446789999999854

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.01  E-value=6e-07  Score=70.77  Aligned_cols=62  Identities=19%  Similarity=0.116  Sum_probs=39.7

Q ss_pred             CCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eCCeEEEEECCCC
Q 029512           87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPGY  148 (192)
Q Consensus        87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~~~~~lvDtPG~  148 (192)
                      .+...+..++|+|++|+|||||+|.|++..........+.+|+.+.... .|..+.++|.+.|
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f   76 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM   76 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHh
Confidence            3444566899999999999999999998642124455556777654322 2445555554443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.99  E-value=1.1e-06  Score=70.52  Aligned_cols=22  Identities=18%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~  113 (192)
                      ...+++.|..||||||+++.|.
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCHHHHHHHHH
Confidence            4578899999999999999998

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.96  E-value=4.8e-05  Score=69.17  Aligned_cols=25  Identities=48%  Similarity=0.660  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|.++|+|++|+|||||+++|+|.
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCC
Confidence            5678999999999999999999986

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.94  E-value=4.5e-05  Score=66.94  Aligned_cols=88  Identities=15%  Similarity=0.142  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc-----cCceeecCCCCce------------eEEEEEe-------------------
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLT------------QTINFFK-------------------  135 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~-----~~~~~~~~~~g~T------------~~~~~~~-------------------  135 (192)
                      ...|+++|.+|+||||+++.|+..     ..+..+..-++..            .....+.                   
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            458899999999999999999842     1222222111100            0000110                   


Q ss_pred             -eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       136 -~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       .+..+.|+||||....  .......+..+..   ....+.+++|+|+..
T Consensus       180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~---~~~pd~vlLVvDA~~  224 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKE--DKALIEEMKQISN---VIHPHEVILVIDGTI  224 (443)
T ss_dssp             HTTCSEEEEECCCCSSC--CHHHHHHHHHHHH---HHCCSEEEEEEEGGG
T ss_pred             hCCCCEEEEECCCcccc--hHHHHHHHHHHHH---hhcCceEEEEEeCCC
Confidence             2478999999997542  2333333333332   234688999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.77  E-value=4.1e-06  Score=65.41  Aligned_cols=24  Identities=13%  Similarity=0.261  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.|+++|.+|+|||||+|.|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            469999999999999999999975

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.75  E-value=3.1e-05  Score=69.60  Aligned_cols=80  Identities=20%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCc----e----------eecCC------CCcee---EEEEEeeCCeEEEEECCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGV----V----------RTSDK------PGLTQ---TINFFKLGTKLCLVDLPGYG  149 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~----~----------~~~~~------~g~T~---~~~~~~~~~~~~lvDtPG~~  149 (192)
                      .+|+|+|..++|||||.-+|+-..+.    .          .+.+.      -|.|.   -..+.+.+..+.|+||||..
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv  111 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ  111 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence            38999999999999999999732110    0          11111      12221   22345568899999999975


Q ss_pred             CCCChHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512          150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s  183 (192)
                      +-  ..+....         .+.+|..++|||+.
T Consensus       112 DF--~~Ev~ra---------L~~~DgAvlVvda~  134 (548)
T 3vqt_A          112 DF--SEDTYRV---------LTAVDSALVVIDAA  134 (548)
T ss_dssp             GC--SHHHHHH---------HHSCSEEEEEEETT
T ss_pred             HH--HHHHHHH---------HHhcCceEEEeecC
Confidence            41  1111121         13579999999985

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.73  E-value=0.0001  Score=64.47  Aligned_cols=24  Identities=21%  Similarity=0.149  Sum_probs=21.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ....|+++|++|+||||+++.|..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345889999999999999999983

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.61  E-value=3.1e-05  Score=59.14  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +..++|+|+||+|||||++.|.+..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4589999999999999999999863

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.47  E-value=0.0002  Score=66.09  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=47.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccC----ceeec------C------CCCceeEE---EEEee-------CCeEEEEE
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------D------KPGLTQTI---NFFKL-------GTKLCLVD  144 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------~------~~g~T~~~---~~~~~-------~~~~~lvD  144 (192)
                      +..+|+|+|+..+|||||..+|+...+    ...+.      +      .-|.|...   .+.+.       +..+.|+|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            345899999999999999999973321    01111      1      11233221   12221       46799999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512          145 LPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       145 tPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s  183 (192)
                      |||..+-  ..+...+   +      +.+|+.++|||+.
T Consensus        92 TPGHvDF--~~Ev~~a---L------r~~DgavlvVDav  119 (709)
T 4fn5_A           92 TPGHVDF--TIEVERS---L------RVLDGAVVVFCGT  119 (709)
T ss_dssp             CCSCTTC--HHHHHHH---H------HHCSEEEEEEETT
T ss_pred             CCCCccc--HHHHHHH---H------HHhCeEEEEEECC
Confidence            9997651  2222222   1      3479999999985

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.45  E-value=2.7e-05  Score=71.20  Aligned_cols=80  Identities=23%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccC----ceeec------CCC------CceeEE---EEEeeCCeEEEEECCCCCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------DKP------GLTQTI---NFFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------~~~------g~T~~~---~~~~~~~~~~lvDtPG~~~~~~  153 (192)
                      .+|+|+|+.++|||||..+|+...+    ...+.      +..      |.|...   .+.+.+..+.|+||||..+-  
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST--
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH--
Confidence            4789999999999999999974321    01111      111      233322   23445789999999997641  


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIF  183 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s  183 (192)
                      ..+...         ..+.+|..++|||+.
T Consensus        81 ~~Ev~r---------aL~~~DgavlVVDa~  101 (638)
T 3j25_A           81 LAEVYR---------SLSVLDGAILLISAK  101 (638)
T ss_dssp             HHHHHH---------HHTTCSEEECCEESS
T ss_pred             HHHHHH---------HHHHhCEEEEEEeCC
Confidence            111111         224679999999985

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.43  E-value=6.9e-05  Score=58.24  Aligned_cols=24  Identities=29%  Similarity=0.511  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..++|+|++|+|||||++.|++.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347899999999999999999985

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.40  E-value=0.00011  Score=60.96  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++++|++|+||||+++.|.+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~  128 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAI  128 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999853

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.32  E-value=0.00014  Score=56.63  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34589999999999999999999863

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.30  E-value=0.0003  Score=58.38  Aligned_cols=23  Identities=22%  Similarity=0.249  Sum_probs=20.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...++++|.+|+||||+++.|.+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44788999999999999999984

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.30  E-value=0.00014  Score=55.91  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=21.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .++|+|++|+|||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999863

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.26  E-value=0.00019  Score=55.14  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..++|+|++|+|||||++.|.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            457999999999999999999985

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.26  E-value=0.00016  Score=57.07  Aligned_cols=25  Identities=24%  Similarity=0.551  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|++..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578999999999999999999863

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.25  E-value=0.00015  Score=56.40  Aligned_cols=38  Identities=26%  Similarity=0.276  Sum_probs=26.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI  131 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~  131 (192)
                      .|+|+|+||+||+||++.|+........-..+.|||.+
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p   40 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP   40 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence            37899999999999999998753212223344455543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.24  E-value=0.00023  Score=55.53  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+..++|+|++|+|||||++.|++..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            35589999999999999999999864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.23  E-value=0.00019  Score=56.95  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+..++|+|++|+|||||++.|++..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            45589999999999999999999864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.22  E-value=0.00092  Score=58.77  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~  113 (192)
                      +...|+++|..++|||+|+|.|+
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            45688899999999999999776

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.20  E-value=0.00022  Score=57.15  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34589999999999999999999863

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.17  E-value=0.0015  Score=57.04  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~  113 (192)
                      ...|+++|.+|+||||+...|.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4578899999999999999998

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.13  E-value=0.00028  Score=56.08  Aligned_cols=25  Identities=28%  Similarity=0.205  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4488999999999999999999863

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.11  E-value=0.00025  Score=55.21  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ....|+|+|++|+|||||++.|.+..
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999863

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.10  E-value=0.0003  Score=53.44  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..++|+|++|+|||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            447899999999999999999985

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.08  E-value=0.00033  Score=56.16  Aligned_cols=26  Identities=35%  Similarity=0.464  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.06  E-value=0.00036  Score=56.84  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34588999999999999999999863

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.03  E-value=0.00034  Score=56.30  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      -.++|+|++|+|||||++.|+|-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999863

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.03  E-value=0.00037  Score=54.30  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++|+++|.+|||||||+|.|+..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            569999999999999999999975

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.01  E-value=0.00039  Score=56.33  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34588999999999999999999863

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.00  E-value=0.00043  Score=56.52  Aligned_cols=26  Identities=27%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            34588999999999999999999863

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.00  E-value=0.00036  Score=56.07  Aligned_cols=25  Identities=44%  Similarity=0.578  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4488999999999999999999863

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.00  E-value=0.0004  Score=56.76  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4588999999999999999999863

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.99  E-value=0.00042  Score=55.94  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4488999999999999999999863

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.99  E-value=0.00039  Score=53.76  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+|+|++|+|||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999985

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.99  E-value=0.0004  Score=57.06  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|-
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcC
Confidence            448899999999999999999985

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.99  E-value=0.00043  Score=55.18  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999999863

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.99  E-value=0.00044  Score=56.20  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34589999999999999999999863

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.99  E-value=0.00047  Score=56.24  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|-
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999995

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.98  E-value=0.00099  Score=49.50  Aligned_cols=51  Identities=22%  Similarity=0.148  Sum_probs=34.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE----------eeCCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----------KLGTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~----------~~~~~~~lvDtPG~~~  150 (192)
                      ...++|+|++|+|||||++++.+..  .. .   |..  ..+.          .....+.++|=|+...
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~--~~-~---g~~--~~~~~~~~~~~~~~~~~~~lLilDE~~~~~   96 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA--LE-A---GKN--AAYIDAASMPLTDAAFEAEYLAVDQVEKLG   96 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH--HT-T---TCC--EEEEETTTSCCCGGGGGCSEEEEESTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH--Hh-c---CCc--EEEEcHHHhhHHHHHhCCCEEEEeCccccC
Confidence            4589999999999999999999853  11 1   110  0111          1246799999998754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.98  E-value=0.00046  Score=56.06  Aligned_cols=26  Identities=15%  Similarity=0.275  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.97  E-value=0.00046  Score=57.67  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|.|-
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            4558999999999999999999975

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.97  E-value=0.00042  Score=54.89  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4478999999999999999999863

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.97  E-value=0.00047  Score=56.40  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999863

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.97  E-value=0.00054  Score=52.49  Aligned_cols=25  Identities=24%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +..++|+|++|+||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4589999999999999999999863

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.97  E-value=0.00049  Score=55.56  Aligned_cols=24  Identities=25%  Similarity=0.255  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|-
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            448899999999999999999995

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.96  E-value=0.00047  Score=55.33  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4488999999999999999999863

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.94  E-value=0.00047  Score=51.98  Aligned_cols=24  Identities=13%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            347899999999999999999986

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.93  E-value=0.00053  Score=55.89  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34589999999999999999999863

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.93  E-value=0.00051  Score=55.59  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4488999999999999999999964

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.92  E-value=0.00038  Score=54.82  Aligned_cols=24  Identities=21%  Similarity=0.077  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999999985

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.90  E-value=0.0005  Score=55.96  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .-.++|+|++|+|||||++.|.+.
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHHh
Confidence            348999999999999999999974

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.90  E-value=0.00055  Score=56.33  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4488999999999999999999863

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.89  E-value=0.00039  Score=58.07  Aligned_cols=26  Identities=35%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            45589999999999999999999853

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.87  E-value=0.0006  Score=55.23  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4488999999999999999999863

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.85  E-value=0.00054  Score=51.78  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNAL  112 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L  112 (192)
                      +-.++++|++|+|||||++.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            347899999999999999943

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.84  E-value=0.00074  Score=52.07  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+..++|+|++|+||||+++.|.+.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.83  E-value=0.00036  Score=53.33  Aligned_cols=24  Identities=17%  Similarity=0.374  Sum_probs=21.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..++|+|++|+|||||++.|.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999863

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.81  E-value=0.00077  Score=55.77  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45589999999999999999999863

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.80  E-value=0.00076  Score=52.19  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+|+|++|+||||+.+.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.80  E-value=0.0005  Score=54.19  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=17.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHh-hc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALT-RQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~-~~  115 (192)
                      .+..++|+|++|+|||||++.|. +.
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34589999999999999999999 75

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.79  E-value=0.00073  Score=51.37  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++|+|++|+|||||++.|.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5789999999999999999864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.79  E-value=0.00076  Score=50.32  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|++|+||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999975

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.78  E-value=0.00085  Score=51.42  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.++++|++|+|||||++.|.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            568999999999999999999974

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.77  E-value=0.00076  Score=52.27  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++++|++|+|||||++.|++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            6899999999999999999975

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.77  E-value=0.00069  Score=55.25  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|-
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            448899999999999999999986

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.75  E-value=0.00093  Score=50.05  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..++|+|++|+||||+.+.|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            458999999999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.72  E-value=0.00099  Score=57.01  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|-.
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            34588999999999999999999863

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.71  E-value=0.001  Score=56.71  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|.|-.
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            4488999999999999999999863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.71  E-value=0.0011  Score=55.17  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++++|++|+|||||++.|.+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3458999999999999999999964

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.70  E-value=0.00096  Score=51.81  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +-.++|+|++|+|||||++.|++
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34889999999999999999987

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.69  E-value=0.00096  Score=51.42  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+|+|++|+||||+.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999975

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.69  E-value=0.00094  Score=56.77  Aligned_cols=25  Identities=28%  Similarity=0.472  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||+|+|++..
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3489999999999999999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.68  E-value=0.00092  Score=55.81  Aligned_cols=26  Identities=35%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+..|+|+|++|+|||||++.|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            34568999999999999999999985

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.65  E-value=0.0012  Score=52.57  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~  113 (192)
                      ...|+|+|++|+|||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999999

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.64  E-value=0.0012  Score=56.29  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCC
Confidence            4488999999999999999999863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.0012  Score=56.28  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            4488999999999999999999863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.62  E-value=0.0013  Score=56.64  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCC
Confidence            4488999999999999999999863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.62  E-value=0.0023  Score=53.16  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++++|++|+||||+++.|++.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3458899999999999999999974

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.60  E-value=0.0013  Score=56.07  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4488999999999999999999863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.59  E-value=0.001  Score=55.88  Aligned_cols=24  Identities=13%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      -.++++|++|+|||||+|+|.+..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.57  E-value=0.0014  Score=56.10  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            4488999999999999999999863

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.56  E-value=0.0014  Score=50.99  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|++|+||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.56  E-value=0.0013  Score=52.43  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+|+|++|+|||||++.|.+.
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999885

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.55  E-value=0.001  Score=56.24  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .-+++|+|++|+|||||++.|.|..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.55  E-value=0.0014  Score=56.04  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCC
Confidence            4478999999999999999999863

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.54  E-value=0.0012  Score=56.10  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++++|++|+|||||+++|++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            8999999999999999999874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.54  E-value=0.0015  Score=48.33  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|.+|+||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999999865

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.52  E-value=0.0014  Score=49.37  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|+|++|+|||||++++.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.51  E-value=0.0017  Score=55.97  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34589999999999999999999863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.51  E-value=0.0012  Score=56.18  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCccHHHHHHHHHcCC
Confidence            4488999999999999999999863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.50  E-value=0.0018  Score=49.72  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..|+|+|.+|+||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.0016  Score=57.31  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+..++|+|++|+|||||++.|+|.
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4668999999999999999999985

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.45  E-value=0.0015  Score=55.80  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .-.++++|++|+|||||+++|++.
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347999999999999999999974

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.45  E-value=0.002  Score=49.50  Aligned_cols=24  Identities=25%  Similarity=0.456  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+|+|.+|+||||+.+.|.+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.43  E-value=0.0011  Score=56.48  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4488999999999999999999863

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.42  E-value=0.0021  Score=51.59  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~  113 (192)
                      .+..|+|+|++|+||||+.+.|.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999999

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.42  E-value=0.0019  Score=53.49  Aligned_cols=25  Identities=32%  Similarity=0.255  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+..|+|+|++|+|||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999984

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.41  E-value=0.0035  Score=55.74  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|.+|+|||||++.|.+.
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHH
Confidence            3458999999999999999999974

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.40  E-value=0.0036  Score=53.35  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++++|++|+|||||++.|++.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhh
Confidence            3448899999999999999999974

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.40  E-value=0.0019  Score=54.39  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++++|++|+||||+++.|.+.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999974

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.39  E-value=0.002  Score=47.40  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=18.8

Q ss_pred             CeEEEEecCCCcHHHHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNAL  112 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L  112 (192)
                      +.|+++|.+|+||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.38  E-value=0.0023  Score=49.13  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.37  E-value=0.0022  Score=49.42  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999986

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.36  E-value=0.0013  Score=54.72  Aligned_cols=24  Identities=17%  Similarity=0.368  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.++|+|.+|+|||||+|.|.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            468899999999999999999975

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.32  E-value=0.0022  Score=57.17  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++++|++|+|||||+|+|++.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999985

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.32  E-value=0.0024  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+|+|++|+|||||+.+|...
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.31  E-value=0.0026  Score=49.09  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ....|+|+|.+|+||||+++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999986

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.29  E-value=0.0024  Score=57.47  Aligned_cols=26  Identities=35%  Similarity=0.528  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++++|++|+|||||++.|+|-.
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            45589999999999999999999853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.27  E-value=0.0021  Score=55.92  Aligned_cols=23  Identities=30%  Similarity=0.309  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      -.++|+|++|+|||||+++|++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            37899999999999999999985

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.26  E-value=0.0021  Score=50.78  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+..|+|.|.+|+||||+++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4558999999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.24  E-value=0.0027  Score=56.79  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4458999999999999999999985

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.23  E-value=0.0026  Score=57.27  Aligned_cols=26  Identities=38%  Similarity=0.570  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++++|++|+|||||++.|+|-.
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45589999999999999999999863

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.21  E-value=0.0028  Score=48.72  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|.+|+||||+.+.|.+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC
Confidence            36899999999999999999873

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.20  E-value=0.003  Score=48.00  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|+|.+|+||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.19  E-value=0.0028  Score=47.67  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.18  E-value=0.0034  Score=46.88  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+++|.+|+||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.14  E-value=0.0033  Score=46.80  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=19.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      .|+++|.+|+||||+.+.|..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            689999999999999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.13  E-value=0.0029  Score=50.35  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=20.1

Q ss_pred             EEEEecCCCcHHHHHHHHhhc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~  115 (192)
                      ++|+|++|+|||||+++|.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999985

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.12  E-value=0.0028  Score=51.65  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             EEEEecCCCcHHHHHHHHhhcc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ++|+|++|+|||||+++|.+..
T Consensus        47 vlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHc
Confidence            9999999999999999999863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.11  E-value=0.0038  Score=47.64  Aligned_cols=24  Identities=13%  Similarity=0.289  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.++++|.+|+|||||++.|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.11  E-value=0.0035  Score=52.60  Aligned_cols=25  Identities=32%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+|+|++|+|||||++.|.+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.11  E-value=0.0035  Score=51.71  Aligned_cols=25  Identities=24%  Similarity=0.126  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+|+|.+|+|||||.+.|.+.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3558999999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.10  E-value=0.0027  Score=57.43  Aligned_cols=26  Identities=27%  Similarity=0.506  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++++|++|+|||||++.|+|-.
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            45589999999999999999999853

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.09  E-value=0.0039  Score=46.82  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.07  E-value=0.005  Score=46.71  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+|+|.+|+||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.07  E-value=0.0031  Score=55.80  Aligned_cols=23  Identities=17%  Similarity=0.341  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      -.++|+|++|+|||||++.|+|-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            47899999999999999999975

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.0038  Score=56.72  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            35589999999999999999999853

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.04  E-value=0.0033  Score=56.30  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        25 Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           25 NTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            347899999999999999999985

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.04  E-value=0.0023  Score=57.55  Aligned_cols=26  Identities=35%  Similarity=0.553  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++++|++|+|||||++.|.|-.
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45589999999999999999999853

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.03  E-value=0.011  Score=48.53  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+++|+||+||||+.+.|...
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.02  E-value=0.0041  Score=46.88  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+++|.+|+||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.02  E-value=0.0045  Score=46.55  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+++|.+|+||||+.+.|...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.01  E-value=0.0043  Score=52.51  Aligned_cols=26  Identities=27%  Similarity=0.242  Sum_probs=23.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|..
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            35589999999999999999999874

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.00  E-value=0.0029  Score=57.06  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++++|++|+|||||++.|.|-.
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45589999999999999999999853

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.98  E-value=0.0051  Score=46.49  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+++|.+|+||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.96  E-value=0.005  Score=47.51  Aligned_cols=23  Identities=22%  Similarity=0.157  Sum_probs=20.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +-.++|+|++|+|||||++.|++
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34789999999999999999985

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.96  E-value=0.0042  Score=56.44  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|.|.
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            4458999999999999999999985

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.93  E-value=0.0059  Score=46.49  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|.|.+|+||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            458999999999999999999875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.91  E-value=0.0024  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|+|.+|+||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.89  E-value=0.0058  Score=49.78  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|++.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            448899999999999999998863

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.88  E-value=0.0043  Score=50.15  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=20.1

Q ss_pred             EEEEecCCCcHHHHHHHHhhc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~  115 (192)
                      ++|+|++|+|||||+++|.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            999999999999999999986

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.87  E-value=0.0054  Score=46.02  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+++|.+|+||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            457999999999999999999854

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.86  E-value=0.0065  Score=45.87  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.85  E-value=0.0052  Score=53.65  Aligned_cols=26  Identities=27%  Similarity=0.311  Sum_probs=23.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|++..
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45689999999999999999999874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.84  E-value=0.0031  Score=62.09  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ++-+|+|||+||+|||||++.|++-.
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCc
Confidence            45599999999999999999999753

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.80  E-value=0.0056  Score=46.01  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..|+++|.+|+||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999985

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.80  E-value=0.0055  Score=46.02  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+|+|.+|+||||+.+.|.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            447899999999999999999874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.80  E-value=0.0064  Score=47.35  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.79  E-value=0.0058  Score=51.00  Aligned_cols=23  Identities=17%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..++|+|++|+|||||++.|++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999986

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.77  E-value=0.0071  Score=46.34  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.74  E-value=0.0067  Score=46.08  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            458999999999999999999865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.74  E-value=0.0059  Score=46.60  Aligned_cols=23  Identities=39%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.73  E-value=0.0062  Score=49.22  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|.+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999873

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.73  E-value=0.008  Score=46.06  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|.|.+|+||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999863

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.71  E-value=0.0062  Score=45.56  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|.+|+||||+.+.|...
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.70  E-value=0.0072  Score=47.26  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.70  E-value=0.0061  Score=54.57  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            447899999999999999999985

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.70  E-value=0.0079  Score=44.43  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.69  E-value=0.0056  Score=54.73  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4488999999999999999999963

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.69  E-value=0.0079  Score=46.20  Aligned_cols=23  Identities=13%  Similarity=-0.038  Sum_probs=20.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +-.++++|++|+|||||++.|++
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999999975

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.67  E-value=0.0056  Score=52.00  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=18.6

Q ss_pred             eEEEEecCCCcHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~  113 (192)
                      ..+|+|++|+|||||+++|+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56799999999999999998

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.62  E-value=0.0084  Score=46.60  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+|+|.+|+||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.61  E-value=0.0093  Score=45.55  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4458999999999999999999854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.61  E-value=0.0076  Score=46.50  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +|+|.|.+|+||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.61  E-value=0.007  Score=44.80  Aligned_cols=20  Identities=35%  Similarity=0.484  Sum_probs=18.6

Q ss_pred             eEEEEecCCCcHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~  113 (192)
                      ..+|+|++|+||||++.+|.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            67899999999999999987

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.60  E-value=0.0082  Score=46.39  Aligned_cols=22  Identities=14%  Similarity=0.330  Sum_probs=19.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +|+|+|.+|+||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.57  E-value=0.0088  Score=45.23  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|.+|+||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.56  E-value=0.011  Score=45.21  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|...
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999753

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.56  E-value=0.0085  Score=51.32  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++++|++|+|||||++.|.+.
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            458999999999999999999975

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.53  E-value=0.011  Score=51.13  Aligned_cols=67  Identities=19%  Similarity=0.271  Sum_probs=42.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeec-CC-------CCceeEEEEE-eeCCeEEEEECCCCCCCCChHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DK-------PGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKD  159 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~-------~g~T~~~~~~-~~~~~~~lvDtPG~~~~~~~~~~~~  159 (192)
                      +.|+|+|+||+|||||...|.........+ +.       .-+|..+... ..+.+..++|.--+....+.....+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~   78 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFET   78 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHH
Confidence            468999999999999999998653222222 11       1234443222 1367888888887766655544433

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.51  E-value=0.0076  Score=59.31  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.+++||++|+|||||++.|.|..
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             CCcEEEEEecCCCcHHHHHHHhcccc
Confidence            45699999999999999999999854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.51  E-value=0.0082  Score=54.53  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|..
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4478999999999999999999963

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.51  E-value=0.008  Score=46.88  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +-.++|+|++|+|||||+..|++
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45889999999999999999988

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.51  E-value=0.0085  Score=47.92  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+++|.+|+||||+.+.|...
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            458899999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.44  E-value=0.0093  Score=44.13  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.43  E-value=0.009  Score=46.23  Aligned_cols=24  Identities=33%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+++|.+|+||||+.+.|.+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            458899999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.42  E-value=0.0086  Score=44.95  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|.+|+||||+.+.|...
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.0079  Score=54.65  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .++|+|++|+|||||++.|+|..
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999999863

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.40  E-value=0.0087  Score=48.10  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+++|.+|+||||+.+.|...
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            458999999999999999999863

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.40  E-value=0.0096  Score=46.11  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..|+|.|.+|+||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.40  E-value=0.0083  Score=48.16  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=20.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|+|++|+|||||-+.|.+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            6899999999999999999865

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.40  E-value=0.012  Score=44.10  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.38  E-value=0.0099  Score=44.67  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.|+|+|.+|+||||+-+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.38  E-value=0.011  Score=44.50  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      .|++.|.+|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999986

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.37  E-value=0.019  Score=45.61  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..++|+|++|+|||||.++|.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.052  Score=47.39  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..-|+|.|+||+|||+|.+++++..
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3478999999999999999999863

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=95.31  E-value=0.0037  Score=53.28  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=20.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+ .++|+|++|+|||||+++|.+.
T Consensus        60 ~G-~~~lvG~NGaGKStLl~aI~~l   83 (415)
T 4aby_A           60 GG-FCAFTGETGAGKSIIVDALGLL   83 (415)
T ss_dssp             SS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHH
Confidence            44 8999999999999999998643

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.28  E-value=0.012  Score=43.41  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|.|.+|+||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.27  E-value=0.0089  Score=58.65  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|-.
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999999854

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.26  E-value=0.012  Score=45.49  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +|+|.|.+|+||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.25  E-value=0.013  Score=45.27  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||||.+.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.25  E-value=0.01  Score=46.11  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+|+|.+|+||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.24  E-value=0.016  Score=48.64  Aligned_cols=66  Identities=20%  Similarity=0.161  Sum_probs=41.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeec-C-------CCCceeEEEE-EeeCCeEEEEECCCCCCCCChHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-D-------KPGLTQTINF-FKLGTKLCLVDLPGYGFAYAKEEVK  158 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~-------~~g~T~~~~~-~~~~~~~~lvDtPG~~~~~~~~~~~  158 (192)
                      +.|+|+|+||+|||||...|........++ +       ..-.|..+.. ...+.+..++|.--+....+.....
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~   78 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQ   78 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHH
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHH
Confidence            468899999999999999998764322211 1       1113333321 1236788899988877766654433

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.23  E-value=0.011  Score=48.98  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.+++.|++|+||||+++.|.+.
T Consensus        36 ~~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           36 LPHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999883

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.22  E-value=0.009  Score=44.64  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=17.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|.|.+|+||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999854

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.18  E-value=0.0023  Score=51.10  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEecCCCcHHHHHHHHhhc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~  115 (192)
                      ++|+|++|+|||||+++|++.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            468899999999999999975

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.16  E-value=0.01  Score=43.79  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||++...+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999865

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.13  E-value=0.016  Score=45.64  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .....|+|+|.+|+||||+.+.|.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999863

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.10  E-value=0.015  Score=44.30  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..++|.|++|+|||+|..++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.07  E-value=0.014  Score=46.24  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+..|++.|.+|+||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3558999999999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.99  E-value=0.018  Score=45.18  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.98  E-value=0.022  Score=48.21  Aligned_cols=67  Identities=16%  Similarity=0.132  Sum_probs=41.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeec-CCC-------CceeEEEE-EeeCCeEEEEECCCC-CCCCChHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKP-------GLTQTINF-FKLGTKLCLVDLPGY-GFAYAKEEVKD  159 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~~-------g~T~~~~~-~~~~~~~~lvDtPG~-~~~~~~~~~~~  159 (192)
                      +.|+|+|+||+|||||-..|........++ +..       -.|..+.. ...+.+..++|..-+ ....+.....+
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~  117 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS  117 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence            479999999999999999999764322222 211       13333321 123677788888777 55555444443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.98  E-value=0.017  Score=46.29  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|.|++|+||||+.+.|...
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999853

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.96  E-value=0.078  Score=46.11  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .-++|.|+||+|||+|.+++++.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999986

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.95  E-value=0.015  Score=46.24  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999754

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.92  E-value=0.016  Score=45.27  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|.|.+|+||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.89  E-value=0.019  Score=46.42  Aligned_cols=23  Identities=22%  Similarity=0.107  Sum_probs=20.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +-.++|+|++|+|||||+..+++
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45889999999999999999885

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.88  E-value=0.0093  Score=57.01  Aligned_cols=25  Identities=36%  Similarity=0.504  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|.
T Consensus       698 ~GeivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          698 LSSRIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999986

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.88  E-value=0.027  Score=46.78  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++++|++|+||||++..|.+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHH
Confidence            447899999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.86  E-value=0.016  Score=55.42  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|.+.
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            447899999999999999999963

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.86  E-value=0.018  Score=43.81  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|.|.+|+||||+.+.|...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.86  E-value=0.016  Score=45.03  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHh
Q 029512           93 PEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~  113 (192)
                      ...+|+|++|+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            367899999999999999986

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.79  E-value=0.022  Score=43.00  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++|.|++|+|||++.+.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999863

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.78  E-value=0.017  Score=45.96  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|.|.+|+||||+-+.|...
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.78  E-value=0.019  Score=44.89  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .|+++|+||+||+|....|....
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.77  E-value=0.011  Score=53.04  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..++|+|.+|+|||||.+.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            458999999999999999999975

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.75  E-value=0.018  Score=47.90  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.++|.|++|+|||||++.+.+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999865

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.73  E-value=0.021  Score=42.24  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=21.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+..|+|.|.+|+||||+.+.|...
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.71  E-value=0.019  Score=48.07  Aligned_cols=66  Identities=23%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeec-CC-------CCceeEEEEE-eeCCeEEEEECCCCCCCCChHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DK-------PGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEV  157 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~-------~g~T~~~~~~-~~~~~~~lvDtPG~~~~~~~~~~  157 (192)
                      .+.|+|+|+||+|||||...|........++ +.       .-.|..+... ..+.+..++|.--+....+....
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f   84 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADF   84 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHH
Confidence            3468899999999999999999764322222 11       1133333211 13567788888777666555443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.70  E-value=0.021  Score=47.39  Aligned_cols=23  Identities=39%  Similarity=0.693  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.+++.|++|+||||+++++.+.
T Consensus        47 ~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           47 PHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=94.66  E-value=0.023  Score=45.96  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...++|.|+||+|||++.+++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4589999999999999999999753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=94.65  E-value=0.018  Score=56.52  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            34589999999999999999999853

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.63  E-value=0.023  Score=47.04  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            447899999999999999999874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=94.60  E-value=0.013  Score=53.58  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHh
Q 029512           93 PEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~  113 (192)
                      -.++|+|++|+|||||+|.++
T Consensus       349 e~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          349 TFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             SEEEEECSTTSSHHHHHTTTH
T ss_pred             CEEEEEeeCCCCHHHHHHHHH
Confidence            367999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.56  E-value=0.023  Score=46.28  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...|+|+|.+|+||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999984

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=94.56  E-value=0.025  Score=45.34  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...++|.|++|+|||+|.+++.+..
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4479999999999999999998753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.55  E-value=0.03  Score=45.41  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++|.|+||+|||++.+++...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4557999999999999999887754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.53  E-value=0.029  Score=44.30  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..|+|+|+||+||+|....|....
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            366789999999999999998654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=94.49  E-value=0.028  Score=44.25  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||++.+++.+.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999875

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.47  E-value=0.026  Score=48.66  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|+|++|+|||||+++|.+.
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347899999999999999999864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.46  E-value=0.022  Score=43.40  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..++|.|++|+|||||+..+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.46  E-value=0.018  Score=48.38  Aligned_cols=65  Identities=22%  Similarity=0.177  Sum_probs=37.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeec-CC-------CCceeEEE-EEeeCCeEEEEECCCCCCCCChHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DK-------PGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEV  157 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~-------~g~T~~~~-~~~~~~~~~lvDtPG~~~~~~~~~~  157 (192)
                      ..|+|+|+||+|||||-..|.........+ +.       ...|..+. ....+.+..++|..-+....+....
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F   79 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEF   79 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHH
Confidence            378999999999999999999764222221 11       11222211 1112556677777766554444443

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.45  E-value=0.029  Score=46.92  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.-+++.|.+|+||||+.+.|.+.
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            457999999999999999999986

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.44  E-value=0.054  Score=45.17  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++++|.+|+||||++..|.+.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999853

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=94.37  E-value=0.029  Score=45.89  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...++|.|++|+|||+|.+++.+..
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHh
Confidence            3478999999999999999999753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.33  E-value=0.12  Score=44.55  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .-|+|.|+||+|||+|..++++..
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHhh
Confidence            368999999999999999999863

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.31  E-value=0.025  Score=46.48  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||||++++.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457899999999999999999874

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.30  E-value=0.027  Score=47.80  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+.++++|.+|+||||+++.|+..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHH
Confidence            3568899999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.28  E-value=0.026  Score=45.75  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+++|.+|+||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999999863

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.26  E-value=0.044  Score=47.17  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...|+++|.+|+||||+.+.|....
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578899999999999999998753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.24  E-value=0.053  Score=43.83  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..++|+|++|+|||++.++|.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            37899999999999999999864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.23  E-value=0.019  Score=47.65  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..+|+|++|+|||||+.+|..
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHH
Confidence            789999999999999999983

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.15  E-value=0.031  Score=49.47  Aligned_cols=21  Identities=19%  Similarity=0.177  Sum_probs=18.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNAL  112 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L  112 (192)
                      +-.++|+|++|+|||||++.+
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHH
Confidence            458999999999999999994

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.15  E-value=0.03  Score=50.01  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++|+|+||+|||||.++|.+.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4668999999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.12  E-value=0.032  Score=43.07  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|+|.+|+||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.12  E-value=0.03  Score=47.18  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.+.|+|++|+|||||++.|++.
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3448899999999999999999875

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=94.10  E-value=0.027  Score=47.03  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..+|+|++|+||||++.+|+.
T Consensus        25 ~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           25 INLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            668999999999999999853

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.08  E-value=0.04  Score=40.04  Aligned_cols=24  Identities=13%  Similarity=0.070  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|.|++|+|||++..+|...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999999875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.00  E-value=0.042  Score=45.19  Aligned_cols=23  Identities=39%  Similarity=0.676  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.++|.|++|+||||+.+++.+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999999865

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=93.98  E-value=0.03  Score=49.90  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+.++++|.||+|||+++|+|...
T Consensus       166 ~~pHlLIaG~TGSGKSt~L~~li~s  190 (512)
T 2ius_A          166 KMPHLLVAGTTGSGASVGVNAMILS  190 (512)
T ss_dssp             GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999999863

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=93.93  E-value=0.043  Score=44.83  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .-++|.|+||+|||+|..++...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35677799999999999999965

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=93.91  E-value=0.045  Score=45.20  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...+.|.|++|+|||+|.++|...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999864

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.91  E-value=0.2  Score=44.05  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..-|+|.|+||+|||+|.+++++..
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e~  267 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANRT  267 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhcc
Confidence            3478999999999999999999863

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.90  E-value=0.048  Score=41.97  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..-|++.|+||+|||||.-.|...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            446899999999999999999876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.90  E-value=0.033  Score=43.76  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...|+|+|+||+|||||...|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4478999999999999999999763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.89  E-value=0.044  Score=42.59  Aligned_cols=22  Identities=14%  Similarity=0.253  Sum_probs=18.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~  113 (192)
                      +-.++++|++|+|||||...++
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4478999999999999976665

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.88  E-value=0.03  Score=44.25  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+++.|+||+||||+..+|...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999998888864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.84  E-value=0.041  Score=44.28  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...+++.|+||+|||++.+++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=93.81  E-value=0.037  Score=45.84  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||||++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=93.77  E-value=0.023  Score=46.63  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.|+|.|.+|+||||+.+.|...
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999763

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=93.74  E-value=0.037  Score=46.98  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      .++|+|++|+||||++++|.+
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            789999999999999999985

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=93.72  E-value=0.046  Score=46.50  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=21.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+.|+|+|++|+||||+...|.+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999988864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.72  E-value=0.041  Score=43.31  Aligned_cols=24  Identities=29%  Similarity=0.589  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..|++.|.+|+||||+.+.|....
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.70  E-value=0.025  Score=45.25  Aligned_cols=25  Identities=28%  Similarity=0.508  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3458999999999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=93.58  E-value=0.052  Score=44.64  Aligned_cols=24  Identities=29%  Similarity=0.628  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||++.+++...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457899999999999999999865

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=93.54  E-value=0.037  Score=49.05  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      -++|+|++|+|||+|.++|.+..
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.48  E-value=0.042  Score=43.97  Aligned_cols=24  Identities=17%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||++..++...
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            458999999999999999999864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=93.46  E-value=0.12  Score=42.63  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|+||+|||+|..++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999875

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=93.43  E-value=0.048  Score=51.05  Aligned_cols=24  Identities=17%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.+.+-
T Consensus       607 g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          607 RRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHHH
Confidence            347899999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=93.30  E-value=0.022  Score=45.30  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++|.|++|+|||+|.+++.+.
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999875

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=93.27  E-value=0.048  Score=46.10  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=19.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHh
Q 029512           93 PEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~  113 (192)
                      ...+|+|++|+||||++.+|.
T Consensus        26 gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999986

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.22  E-value=0.052  Score=45.85  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..|+|+|+||+|||||...|....
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            378999999999999999998753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.21  E-value=0.057  Score=47.61  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.+++|+|.+|+|||||+|.|...
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhh
Confidence            458999999999999999999864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.18  E-value=0.041  Score=39.94  Aligned_cols=23  Identities=4%  Similarity=0.164  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|++.|++|+|||++.+++...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46899999999999999999875

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.18  E-value=0.068  Score=44.40  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||+|.+.+...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999999874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=93.16  E-value=0.15  Score=42.16  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||+|.+++.+.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999999975

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.15  E-value=0.05  Score=47.45  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+++|.+|+||||+.+.|...
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=93.11  E-value=0.048  Score=50.80  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      -.++|+|++|+|||||++.+.+-
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHhh
Confidence            47899999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=93.10  E-value=0.078  Score=43.97  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|+||+|||++..++...
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999865

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.08  E-value=0.054  Score=45.98  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~  113 (192)
                      ...+|+|+|.+++||||++..+.
T Consensus        32 ~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCcHHHHHHHHH
Confidence            35799999999999999988874

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=93.06  E-value=0.054  Score=47.00  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...++|.|++|+|||||++++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.06  E-value=0.062  Score=41.30  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|.+|+||||+.+.|...
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.03  E-value=0.085  Score=45.98  Aligned_cols=25  Identities=20%  Similarity=0.154  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..-|+|.|+||+|||+|..++++..
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHh
Confidence            3479999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	4e-17
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-11
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-11
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	6e-10
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	8e-10
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-08
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-07
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	3e-07
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	7e-07
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	2e-06
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	8e-06
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	8e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	6e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	1e-04
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	0.001
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	0.001
d2akab1	299	c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n	0.002

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 73.6 bits (179), Expect = 4e-17
 Identities = 43/114 (37%), Positives = 62/114 (54%)

Query: 73  NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
            K E   +A     +P   LPEIA AGRSNVGKSS +N+L  +  + RTS KPG TQT+N
Sbjct: 4   TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63

Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
           F+ +  +L  VD+PGYGFA   +  ++AW  ++             +  +   +
Sbjct: 64  FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH 117

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 58.3 bits (139), Expect = 2e-11
 Identities = 44/112 (39%), Positives = 59/112 (52%)

Query: 77  FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
           F  +A      P+    E+AFAGRSN GKSS LN LT Q  + RTS  PG TQ IN F++
Sbjct: 1   FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60

Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVI 188
                LVDLPGYG+A   EE+K  W+  +        S    ++ +   + +
Sbjct: 61  ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL 112

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 57.7 bits (138), Expect = 3e-11
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 8/106 (7%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
           + ++   G  N GKSS+L A+TR     + +  P  T + N          +  L D+PG
Sbjct: 1   IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58

Query: 148 YGFAYAKEE--VKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILY 191
                ++ +    +    +       +              +    
Sbjct: 59  IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEV 104

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 53.9 bits (128), Expect = 6e-10
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           I FAGRSNVGKS+++  LT +   VR   +PG+T+ I   +      ++D+PG+GF    
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIE-WKNHKIIDMPGFGFMMGL 59

Query: 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
            +      +   + +    +    +  +    
Sbjct: 60  PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG 91

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 53.4 bits (127), Expect = 8e-10
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 8/92 (8%)

Query: 92  LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
           L ++   G  +VGKS++L+ ++      + +D    T   N        G    + DLPG
Sbjct: 1   LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPG 58

Query: 148 Y--GFAYAKEEVKDAWEELVSISYRNFWSCTC 177
              G              +             
Sbjct: 59  LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMS 90

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 64  ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWGVVRT 121
             IE  +    ++    + +S +    D  +  +A  G +  GKSS +N L         
Sbjct: 27  NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 85

Query: 122 SDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEE 156
           + K G+ +               +   DLPG G      +
Sbjct: 86  AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD 125

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.7 bits (109), Expect = 2e-07
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
           +   GR NVGKS++ N L ++       D+ G+T+     
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQD 41

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 46.3 bits (108), Expect = 3e-07
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
           IA  GR NVGKS++LN L  Q  +  TS K   T+
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTR 41

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.1 bits (105), Expect = 7e-07
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 18/109 (16%)

Query: 90  PDLPE---IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLV 143
           P++ +   +A  GR NVGKS++ NA+  +      S  PG T+     ++   G K   V
Sbjct: 3   PEITDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFV 61

Query: 144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF 192
           D  G              +  V       +S    +  I   +V+++  
Sbjct: 62  DTAGLR-----------RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVL 99

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
           +   G+ NVGKS++LN L  +      +D PG T+ +   ++   G    +VD  G    
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 58

Query: 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183
             + E  D  E L              ++++ 
Sbjct: 59  --RSETNDLVERLGIERTLQEIEKADIVLFVL 88

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.0 bits (102), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +A  G+ NVGKS++LN L     V   S +P  T+      L      +        +  
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 155 EEVKDAWEELVSISYRNFWSCTCFLI 180
            +    + +          +   +++
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVV 92

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 8e-06
 Identities = 19/84 (22%), Positives = 28/84 (33%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +  AGR N GKSS+LNAL  +   + T         +        + L  +   G   A 
Sbjct: 4   VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 63

Query: 155 EEVKDAWEELVSISYRNFWSCTCF 178
           +EV+    E               
Sbjct: 64  DEVERIGIERAWQEIEQADRVLFM 87

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.9 bits (100), Expect = 8e-06
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
               G  NVGKS+++N L ++  + +T D+PG+T +  + K+G +L L+D PG  +   +
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFE 173

Query: 155 EE 156
           +E
Sbjct: 174 DE 175

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 93  PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
           P I  AG  N GK+S+L  LT        S +P +               V L  +    
Sbjct: 4   PSIIIAGPQNSGKTSLLTLLTTD------SVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131
           I   G+  VGKSS +N++  +  VV  S         
Sbjct: 35  ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRP 70

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 91  DLPEIAFAGRSNVGKSSMLNALTRQ 115
           DLP+I   G  + GKSS+L  +  +
Sbjct: 23  DLPQIVVVGSQSSGKSSVLENIVGR 47

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 8/84 (9%), Positives = 23/84 (27%)

Query: 95  IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
           +   G  N GK+++L   +    V  +       + I        +  +       +   
Sbjct: 18  VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 77

Query: 155 EEVKDAWEELVSISYRNFWSCTCF 178
               +    +V +   +    +  
Sbjct: 78  TYYTNTEFVIVVVDSTDRERISVT 101

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 91  DLPEIAFAGRSNVGKSSMLNALTR 114
           DLP+IA  G  + GKSS+L     
Sbjct: 25  DLPQIAVVGGQSAGKSSVLENFVG 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.68
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.63
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.62
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.57
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.55
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.51
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.51
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.51
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.49
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.46
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.43
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.42
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.4
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.33
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.3
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.18
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.17
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.15
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.14
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.14
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.13
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.1
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.08
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.06
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.04
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.01
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.01
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.01
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.01
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.0
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.99
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.99
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.95
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.9
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.88
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.87
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.86
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.85
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.84
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.84
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.83
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.81
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.81
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.8
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.8
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.79
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.79
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.78
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.76
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.76
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.76
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.75
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.74
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.74
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.72
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.7
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.66
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.64
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.62
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.6
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.53
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.53
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.43
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.39
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.38
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.31
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.28
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.21
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.18
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.11
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.04
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.01
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.87
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.85
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.72
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.67
d1okkd2	207	GTPase domain of the signal recognition particle r	97.57
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.57
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.54
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.54
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.42
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.37
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.33
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.26
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.2
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.19
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.17
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.16
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.14
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.13
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.1
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.1
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.09
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.09
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.09
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.05
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.02
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.01
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.98
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.92
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.91
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.91
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.9
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.9
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.88
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.88
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.88
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.87
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.86
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.83
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.76
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.75
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.75
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.74
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.72
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.69
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.66
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.64
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.6
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.6
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.59
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.57
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.57
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.55
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.54
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.52
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.51
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.48
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.47
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.41
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.4
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.4
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.35
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.35
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.27
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.24
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.2
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.17
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.16
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.15
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.14
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.1
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.06
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.02
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.96
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.9
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.88
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.83
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.82
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.78
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.77
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.7
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.66
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.45
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.29
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.28
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.28
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.15
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.14
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.05
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.04
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.03
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.03
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.0
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.94
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.89
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.75
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.75
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.73
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.63
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.61
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.54
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.4
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.33
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.19
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.12
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.02
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.0
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.96
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.9
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.9
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.81
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.81
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.74
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.57
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.54
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.52
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.5
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.38
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.97
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.97
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.9
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.88
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.75
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.6
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.14
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.05
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.96
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.81
d1xzpa1	173	TrmE connector domain {Thermotoga maritima [TaxId:	91.36
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.18
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.89
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	90.75
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	90.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.56
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	90.43
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.37
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	90.35
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	90.15
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.0
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	89.59
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	89.58
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.34
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.07
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.61
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.18
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	87.19
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.67
d1xpua3	289	Transcription termination factor Rho, ATPase domai	85.94
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.35
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	85.09
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	83.95
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	83.71
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.59

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=4.3e-17  Score=123.77  Aligned_cols=89  Identities=30%  Similarity=0.481  Sum_probs=65.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC-ChHHHHHHHHH-HHh--hhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY-AKEEVKDAWEE-LVS--ISY  169 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~-~~~~~~~~~~~-~~~--l~~  169 (192)
                      +|+|+|+||||||||+|+|++..  ..+++.+|+|++...+. ...+.++||||++... ........+.. +..  ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~--~~~~~~~g~T~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIE-WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   78 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEE-ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--ceeeCCCCEeecccccc-cccceecccCCceeccccccccccccchhhhhhhhhc
Confidence            69999999999999999999974  46889999999976554 4567899999987632 22333333322 222  345


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      .+.+|++++|+|++++
T Consensus        79 ~~~~d~~~~vvD~~~~   94 (184)
T d2cxxa1          79 AKNIDVAVLVVDGKAA   94 (184)
T ss_dssp             GGGCCEEEEEEETTHH
T ss_pred             ccccchheeeeecccc
Confidence            5778999999998753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.63  E-value=1.2e-15  Score=124.35  Aligned_cols=135  Identities=24%  Similarity=0.327  Sum_probs=76.0

Q ss_pred             ccccCCCCcccchhhhhhcCCCChhhhhhccceee------c-CCCCCC---C-----CCCChHHHHHHHHHhhhhhHHH
Q 029512           13 FRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIE------L-SAPLDN---I-----PFSTSSERERIEENIFRNKLEF   77 (192)
Q Consensus        13 ~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~------l-~~~~e~---i-----~~~~~~~~~~i~~~~~~~~~~~   77 (192)
                      .++-.|.++.++.+.+.+.+++.++.+++.++--.      . .+....   +     ......+.......++......
T Consensus        23 ~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          23 VDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             EETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCccccchhhhhhhhhhhhh
Confidence            45668999999999999998888888877643100      0 000000   0     0000000000000011111111


Q ss_pred             HHhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512           78 FAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        78 ~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~  153 (192)
                           ...........+|+++|.||||||||+|+|.+. +.+.+++.||+|++.++...+..+.++||||+..+..
T Consensus       103 -----~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~-~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~~p~~  172 (273)
T d1puja_         103 -----MRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKF  172 (273)
T ss_dssp             -----HHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSCC
T ss_pred             -----hhhccCCCCceEEEEEecCccchhhhhhhhhcc-ceEEECCcccccccceEEECCCCeEEecCCCccccCC
Confidence                 111222345678999999999999999999998 6789999999999999999999999999999987543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.62  E-value=1.8e-15  Score=116.32  Aligned_cols=103  Identities=41%  Similarity=0.712  Sum_probs=71.0

Q ss_pred             cccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHH
Q 029512           83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE  162 (192)
Q Consensus        83 ~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~  162 (192)
                      .....|....|+|+|+|+||||||||+|+|+|....+.++..+++|.+.........+.++|++|++.............
T Consensus        14 ~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          14 KPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             SGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             ChhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhh
Confidence            34556677788999999999999999999999755678888889999988888888999999999887554444333333


Q ss_pred             HHHh--hhccCceeEEEEEEecCCc
Q 029512          163 ELVS--ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       163 ~~~~--l~~~~~~~~v~~vvD~s~~  185 (192)
                      .+..  +.....++.+++++|++++
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~  118 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHA  118 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             hHHhhhhccccchhhhhhhhhcccc
Confidence            3333  5667788999999999764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=7.9e-16  Score=127.34  Aligned_cols=84  Identities=21%  Similarity=0.160  Sum_probs=47.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---------------------------eCCeEEEEECC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDLP  146 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---------------------------~~~~~~lvDtP  146 (192)
                      +|+|||.||||||||+|+|++..  +.++++||||.+++...                           ....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            69999999999999999999985  78999999998865321                           11358999999


Q ss_pred             CCCCC-CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          147 GYGFA-YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       147 G~~~~-~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      |+... .........+     +.+.+.+|++++|||++.
T Consensus        80 Gli~ga~~g~~~~~~~-----l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          80 GLVPGAHEGRGLGNKF-----LDDLRMASALIHVVDATG  113 (319)
T ss_dssp             ---------------C-----CCSSTTCSEEEEEEETTC
T ss_pred             CcccchhcccchHHHH-----HHhhccceEEEEEecccc
Confidence            98652 2223222322     778899999999999974

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.2e-14  Score=110.14  Aligned_cols=89  Identities=21%  Similarity=0.154  Sum_probs=65.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..|+|+|.+|||||||+|+|++. ....+++.+++|++.....   .+..+.++||||+......... ......  +..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~-~~~~~~--~~~   81 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGE-FMDQEV--YEA   81 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHH-HHHHHH--HHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC-CceeecccCCcccccccceeeeeeeeeeecccccccccccccch-hccccc--ccc
Confidence            37999999999999999999998 5677888889888765432   4678999999998764332211 111111  344


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      ..++|++++|+|++++
T Consensus        82 ~~~ad~il~v~D~~~~   97 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHP   97 (178)
T ss_dssp             TSSCSEEEEEEETTSC
T ss_pred             cccccceeeeechhhh
Confidence            5688999999999875

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.5e-15  Score=124.91  Aligned_cols=91  Identities=20%  Similarity=0.191  Sum_probs=70.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------------------CCeEEEEECCCCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF  150 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~lvDtPG~~~  150 (192)
                      ...+|+|||.||||||||+|+|++. ..+.++++||||.+++....                    ...+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~-~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC-CCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4569999999999999999999987 44578999999998754321                    24689999999875


Q ss_pred             -CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCceE
Q 029512          151 -AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNV  187 (192)
Q Consensus       151 -~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~  187 (192)
                       +....++.+.|     |.+.+.+|.++||||++..+-
T Consensus        88 gA~~g~GLGn~f-----L~~ir~~d~lihVV~~f~d~~  120 (296)
T d1ni3a1          88 GASTGVGLGNAF-----LSHVRAVDAIYQVVRAFDDAE  120 (296)
T ss_dssp             CCCSSSSSCHHH-----HHHHTTCSEEEEEEECCCTTC
T ss_pred             ccccccccHHHH-----HHHhhccceeEEEEeccCCCC
Confidence             33344444444     667788999999999977543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.51  E-value=1.2e-15  Score=124.41  Aligned_cols=90  Identities=23%  Similarity=0.251  Sum_probs=61.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------------------CCeEEEEECCCCCC-C
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF-A  151 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~lvDtPG~~~-~  151 (192)
                      .+|+|||.||||||||+|+|++..  +..+++|+||.+++....                    ...+.++|.||+.. +
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~--~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCC--CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            589999999999999999999984  678999999999864332                    13588999999875 2


Q ss_pred             CChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEE
Q 029512          152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVII  189 (192)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~  189 (192)
                      ....++.+.|     |.+.+.+|+++|||||+..+.+.
T Consensus        81 ~~g~Glg~~F-----L~~ir~~d~LihVVr~f~~~di~  113 (278)
T d1jala1          81 SKGEGLGNKF-----LANIRETDAIGHVVRCFENDDIV  113 (278)
T ss_dssp             HHHGGGTCCH-----HHHHHTCSEEEEEEECSCC----
T ss_pred             ccCCCccHHH-----HHHHHhccceEEEeeccCCCCCc
Confidence            2222233333     67778899999999998665443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.51  E-value=1.7e-14  Score=116.46  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=65.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS  166 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~  166 (192)
                      ...+|+|+|.||+|||||+|+|+|. ....++..+++|++...+.   .+..+.++||||+.++.. .+.....+..   
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~-~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~---  106 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKS---  106 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH---
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC-CceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHH---
Confidence            3469999999999999999999998 5677888889998765443   478899999999976432 2322222222   


Q ss_pred             hhccCceeEEEEEEecCC
Q 029512          167 ISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~  184 (192)
                      .......+++++|++...
T Consensus       107 ~~~~~~~~~il~v~~~~~  124 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDA  124 (257)
T ss_dssp             HTTTCEECEEEEEEESSC
T ss_pred             HHhcCCCCeEEEEEECCC
Confidence            223456688888887654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=1.2e-15  Score=113.30  Aligned_cols=86  Identities=21%  Similarity=0.265  Sum_probs=63.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCCh----HHHHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK----EEVKDAWEELVS  166 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~----~~~~~~~~~~~~  166 (192)
                      +|+++|++|||||||+|+|+|. ....++..+++|+...   ....+..+.++||||+......    ......      
T Consensus         2 kI~liG~~n~GKSSLin~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~------   74 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERT------   74 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHH------
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHH------
Confidence            7999999999999999999998 5677888888876653   3335788999999998553211    111222      


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      +.....+|++++|+|++++.
T Consensus        75 ~~~~~~ad~ii~v~d~~~~~   94 (160)
T d1xzpa2          75 LQEIEKADIVLFVLDASSPL   94 (160)
T ss_dssp             HHHHHHCSEEEEEEETTSCC
T ss_pred             HHHHHhCCEEEEEEeCCCCc
Confidence            22334579999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.4e-13  Score=101.86  Aligned_cols=90  Identities=27%  Similarity=0.259  Sum_probs=65.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|++|||||||+|+|++. ....++..+++|++..   ....+..+.++||||+........... +...  ...
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~-~~~~--~~~   77 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIG-IERA--WQE   77 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHH-HHHH--HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceEeecccccccceEeeeeeccCceeeeccccccccccccchhHH-HHHH--HHH
Confidence            58999999999999999999998 5566788888877644   333478899999999877443322111 1111  222


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      ...+|++++++|++.++
T Consensus        78 ~~~~d~~i~~~d~~~~~   94 (161)
T d2gj8a1          78 IEQADRVLFMVDGTTTD   94 (161)
T ss_dssp             HHTCSEEEEEEETTTCC
T ss_pred             HHhccccceeecccccc
Confidence            34689999999998765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=1.7e-14  Score=109.64  Aligned_cols=87  Identities=18%  Similarity=0.148  Sum_probs=57.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCC-CCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGF-AYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~-~~~~~~~~~~~~~~~~l  167 (192)
                      +.|+|+|+||||||||+|+|++..  ..+.+.+++|++.....    .+..+.++||||+.. ......   .+..+  +
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~---~~~~~--l   74 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG---LGHQF--L   74 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT---THHHH--H
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC--CceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHH---HHHHH--H
Confidence            579999999999999999999984  45667777776644322    356799999999743 111111   11122  2


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      .+...++.++++++.+..+
T Consensus        75 ~~~~~~~~i~~~v~~~~~~   93 (185)
T d1lnza2          75 RHIERTRVIVHVIDMSGLE   93 (185)
T ss_dssp             HHHHHCCEEEEEEESSCSS
T ss_pred             HHHHHhhhhhheeeecccc
Confidence            3334567788888766543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=6.2e-14  Score=106.19  Aligned_cols=87  Identities=22%  Similarity=0.224  Sum_probs=58.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE--e--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~--~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      +.|+|+|.+|||||||+|+|++..  ....+..+.|++....  .  .+..+.++||||+.......  ...+..+  +.
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~~--l~   75 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG--KGLGLEF--LR   75 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS--CCSCHHH--HH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC--CceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHH--HHHHHHH--HH
Confidence            469999999999999999999974  3455555555544322  2  36779999999987532211  0011111  34


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ....++++++++|++..
T Consensus        76 ~~~~~~~~~~~~d~~~~   92 (180)
T d1udxa2          76 HIARTRVLLYVLDAADE   92 (180)
T ss_dssp             HHTSSSEEEEEEETTSC
T ss_pred             HHHhhhhhhhhcccccc
Confidence            45677899999998653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=5.1e-14  Score=106.84  Aligned_cols=92  Identities=24%  Similarity=0.239  Sum_probs=58.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHH---HHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKD---AWEEL  164 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~---~~~~~  164 (192)
                      ...+|+++|.+|||||||+|+|++. ....+++.+++|+...   ....+..+.++||||+...........   ....+
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC-CcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            3579999999999999999999998 5678888888887764   333478899999999864211110000   00001


Q ss_pred             HhhhccCceeEEEEEEecCCc
Q 029512          165 VSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       165 ~~l~~~~~~~~v~~vvD~s~~  185 (192)
                        +...+.+|++++|+|++++
T Consensus        86 --~~~~~~~dvii~v~d~~~~  104 (186)
T d1mkya2          86 --VDSIEKADVVVIVLDATQG  104 (186)
T ss_dssp             --HHHHHHCSEEEEEEETTTC
T ss_pred             --HHHHhcCCEEEEeeccccc
Confidence              3334568999999999764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=7.2e-13  Score=99.35  Aligned_cols=89  Identities=21%  Similarity=0.155  Sum_probs=51.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|++|||||||+|+|+|. ....++..+++|+......   .+..+.++||||+................  +...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~--~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVT--LNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHH--HHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeecccccccccccc--cccc
Confidence            7999999999999999999997 5567888888887754332   36779999999987633221111111111  2334


Q ss_pred             CceeEEEEEEecCCc
Q 029512          171 NFWSCTCFLIYIFYT  185 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~  185 (192)
                      ..+|++++++|++..
T Consensus        79 ~~ad~i~~~~~~~~~   93 (171)
T d1mkya1          79 READLVLFVVDGKRG   93 (171)
T ss_dssp             TTCSEEEEEEETTTC
T ss_pred             ccCcEEEEeeccccc
Confidence            567899999998754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.9e-12  Score=110.43  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC---ceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~---~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.||||||||+|+|+|...   ...+.+..++|++...+..  ...+.+|||||++.......      .++.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~------~~~~  129 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD------TYLE  129 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHH------HHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHH------HHHH
Confidence            46899999999999999999998531   1223344567887665553  56799999999987433221      1111


Q ss_pred             hhccCceeEEEEEEecCCc
Q 029512          167 ISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~  185 (192)
                      -.....+|+++++.|.+..
T Consensus       130 ~~~~~~~d~~l~~~~~~~~  148 (400)
T d1tq4a_         130 KMKFYEYDFFIIISATRFK  148 (400)
T ss_dssp             HTTGGGCSEEEEEESSCCC
T ss_pred             HhhhhcceEEEEecCCCCC
Confidence            1223457888888876543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.2e-11  Score=92.43  Aligned_cols=101  Identities=36%  Similarity=0.389  Sum_probs=52.4

Q ss_pred             ccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC-ceeEEEEEeeCCeEEEEECCCCCC--CCChHHHHHH
Q 029512           84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLGTKLCLVDLPGYGF--AYAKEEVKDA  160 (192)
Q Consensus        84 ~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-~T~~~~~~~~~~~~~lvDtPG~~~--~~~~~~~~~~  160 (192)
                      ....|....++|+++|+||||||||+|+|++.+ ........+ ++..............+++++...  ..........
T Consensus         8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T d1puia_           8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK-SLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQ   86 (188)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------CCHHHHH
T ss_pred             hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCC-ceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhh
Confidence            345667778999999999999999999999974 333333333 333334444444444455554432  1111111111


Q ss_pred             HHHHHhhhccCceeEEEEEEecCCc
Q 029512          161 WEELVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       161 ~~~~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                      .........+..++.++.+.|+...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~  111 (188)
T d1puia_          87 RALGEYLEKRQSLQGLVVLMDIRHP  111 (188)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             hhhhhhhhhhhheeEEEEeeccccc
Confidence            1111114456677788888887654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.17  E-value=5.9e-11  Score=88.70  Aligned_cols=84  Identities=18%  Similarity=0.249  Sum_probs=59.9

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ....+|+++|.+|||||||+|+|.+. ....+.+..|.+... ....+..+.++|+||-..      ....|..+     
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~-~~~~~~~~~~~~~~~-i~~~~~~~~i~d~~g~~~------~~~~~~~~-----   80 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKS-VQSQGFKLNVWDIGGQRK------IRPYWRSY-----   80 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEE-EEETTEEEEEEECSSCGG------GHHHHHHH-----
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcC-CCCcceeeeeeeEEE-eccCCeeEeEeecccccc------chhHHHHH-----
Confidence            34579999999999999999999987 455555556655442 223467899999998432      22334333     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++++|++++.
T Consensus        81 ~~~~~~ii~v~d~~d~~   97 (176)
T d1fzqa_          81 FENTDILIYVIDSADRK   97 (176)
T ss_dssp             HTTCSEEEEEEETTCGG
T ss_pred             hhccceeEEeecccccc
Confidence            34679999999998754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.1e-10  Score=87.26  Aligned_cols=85  Identities=29%  Similarity=0.248  Sum_probs=56.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh---h
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS---I  167 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~---l  167 (192)
                      .|+++|.+|||||||||+|++. ..+.++..+++|+....   ......+..+|+||.......     .......   .
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~   80 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR-----AINRLMNKAAS   80 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH-----HHHHHHTCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchh-----hhhhhhhhccc
Confidence            6899999999999999999998 56767766666654322   223566778899997532111     1111111   3


Q ss_pred             hccCceeEEEEEEecCC
Q 029512          168 SYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~  184 (192)
                      .....+++++++.|++.
T Consensus        81 ~~~~~~~~~l~~~d~~~   97 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTR   97 (179)
T ss_dssp             SCCCCEEEEEEEEETTC
T ss_pred             cchhhcceeEEEEecCc
Confidence            34467788888888764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.14  E-value=5.1e-12  Score=99.95  Aligned_cols=73  Identities=33%  Similarity=0.379  Sum_probs=49.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC--ceeec----CCCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG--VVRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDAW  161 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~--~~~~~----~~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~~  161 (192)
                      ..+.+++|+||||||||+|+|.+...  ...++    ...+||+..+.+.....-.|+|||||..    ....+.+...|
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~~l~~~~~~~l~~~F  174 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYF  174 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGS
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCccccccccccCcchhhhhh
Confidence            45889999999999999999998632  12222    2234888888888877789999999864    23445555554


Q ss_pred             HHH
Q 029512          162 EEL  164 (192)
Q Consensus       162 ~~~  164 (192)
                      .++
T Consensus       175 ~e~  177 (225)
T d1u0la2         175 KEF  177 (225)
T ss_dssp             TTS
T ss_pred             hhH
Confidence            443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=3.5e-11  Score=91.98  Aligned_cols=80  Identities=26%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      .|+|+|+|++|||||||+|+|++.. ..     +++|++.....   .+..+.++||||.....  .    .+.... ..
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~-~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~--~----~~~~~~-~~   69 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDS-VR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR--Y----KLSDYL-KT   69 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS-CC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGGT--H----HHHHHH-HH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-CC-----CeEEecceEEEEEeCCeEEEEEecccccchh--h----HHHHHH-HH
Confidence            5799999999999999999999873 22     34554433322   36789999999965321  1    122111 12


Q ss_pred             ccCceeEEEEEEecCC
Q 029512          169 YRNFWSCTCFLIYIFY  184 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~  184 (192)
                      .....+.+++++|+..
T Consensus        70 ~~~~~~~~i~~vd~~~   85 (209)
T d1nrjb_          70 RAKFVKGLIFMVDSTV   85 (209)
T ss_dssp             HGGGEEEEEEEEETTS
T ss_pred             HhhhccccceEEEEec
Confidence            3345688888998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=8.4e-11  Score=87.76  Aligned_cols=83  Identities=18%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|+|++........+..+.+........   ...+.+|||||-.      .....+..     .
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e------~~~~~~~~-----~   74 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE------RYRTITTA-----Y   74 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG------GGHHHHHT-----T
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCch------hhHHHHHH-----H
Confidence            48999999999999999999976322233344454544444333   3468899999931      11122211     2


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|.|+++++
T Consensus        75 ~~~ad~~ilv~d~~~~~   91 (169)
T d3raba_          75 YRGAMGFILMYDITNEE   91 (169)
T ss_dssp             TTTCCEEEEEEETTCHH
T ss_pred             HhcCCEEEEEEECccch
Confidence            45789999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.10  E-value=1.4e-10  Score=85.86  Aligned_cols=81  Identities=19%  Similarity=0.275  Sum_probs=54.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .+|+++|.+|||||||+|+|.+. ......+..|.... .....+..+.++||||-      +.....+     -...+.
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~------~~~~~~~-----~~~~~~   69 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGE-DVDTISPTLGFNIK-TLEHRGFKLNIWDVGGQ------KSLRSYW-----RNYFES   69 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC-CCSSCCCCSSEEEE-EEEETTEEEEEEEECCS------HHHHTTG-----GGGCTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC-CCCcccceEeeeee-eccccccceeeeecCcc------hhhhhHH-----Hhhhhh
Confidence            58999999999999999999987 33433343343322 23334778999999993      1111111     233456


Q ss_pred             eeEEEEEEecCCce
Q 029512          173 WSCTCFLIYIFYTN  186 (192)
Q Consensus       173 ~~~v~~vvD~s~~~  186 (192)
                      ++++++++|+++..
T Consensus        70 ~~~~i~v~d~~d~~   83 (165)
T d1ksha_          70 TDGLIWVVDSADRQ   83 (165)
T ss_dssp             CSEEEEEEETTCGG
T ss_pred             hhcceeeeecccch
Confidence            78889999887653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.08  E-value=4.4e-11  Score=94.07  Aligned_cols=80  Identities=19%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--E-------------------eeCCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-------------------KLGTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~-------------------~~~~~~~lvDtPG~~~  150 (192)
                      .|.|+++|++|+|||||+|+|++.. .. .....++|.+...  .                   ..+..+.++||||...
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSA-VA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH-HS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhc-ch-heecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence            4679999999999999999999863 11 1112222222110  0                   1245799999999533


Q ss_pred             CCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      -...-           ......+|++++|+|+..
T Consensus        83 f~~~~-----------~~~~~~~D~~ilVvda~~  105 (227)
T d1g7sa4          83 FTTLR-----------KRGGALADLAILIVDINE  105 (227)
T ss_dssp             CTTSB-----------CSSSBSCSEEEEEEETTT
T ss_pred             ccccc-----------hhcccccceEEEEEeccc
Confidence            11000           234466899999999864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=5.9e-11  Score=88.19  Aligned_cols=83  Identities=19%  Similarity=0.059  Sum_probs=50.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++++........++.+.+....... .+  ..+.+|||||-....      ..+..+     
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~------~~~~~~-----   71 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR------TITTAY-----   71 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS------CCCHHH-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhH------HHHHHH-----
Confidence            5899999999999999999998632222223333333322232 23  356789999942110      111122     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .++++.+++|+|.++++
T Consensus        72 ~~~~~~~i~v~d~~~~~   88 (166)
T d1g16a_          72 YRGAMGIILVYDITDER   88 (166)
T ss_dssp             HTTEEEEEEEEETTCHH
T ss_pred             HhcCCEEEEEEECCCcc
Confidence            35789999999998875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.04  E-value=2.6e-11  Score=96.16  Aligned_cols=76  Identities=26%  Similarity=0.410  Sum_probs=48.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccC--ceeecCC--C--CceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWG--VVRTSDK--P--GLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDA  160 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~--~~~~~~~--~--g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~  160 (192)
                      ...+.+++|+||||||||+|+|.+...  ...++..  .  .||+....+..+. -.|+|||||..    ....+.+...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g~iiDTPG~r~~~l~~~~~~~l~~~  174 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-GLVADTPGFSSLEFTDIEEEELGYT  174 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-EEEESSCSCSSCCCTTCCHHHHGGG
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-CEEEECCccccccccccCcccchhh
Confidence            356889999999999999999998632  1222222  2  3666665555553 47899999854    2455667778


Q ss_pred             HHHHHhh
Q 029512          161 WEELVSI  167 (192)
Q Consensus       161 ~~~~~~l  167 (192)
                      |.++..+
T Consensus       175 F~ei~~~  181 (231)
T d1t9ha2         175 FPDIREK  181 (231)
T ss_dssp             SHHHHHH
T ss_pred             hhhHHHH
Confidence            8888663

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.01  E-value=6.3e-10  Score=83.64  Aligned_cols=84  Identities=21%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ....+|+++|.+|||||||++.|.+. ......++.+.+.. .....+..+.++|+||......      .+     -..
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g~~~~~~------~~-----~~~   81 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVE-TLSYKNLKLNVWDLGGQTSIRP------YW-----RCY   81 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEE-EEEETTEEEEEEEEC----CCT------TG-----GGT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC-CCCccccccceEEE-EEeeCCEEEEEEecccccccch------hH-----Hhh
Confidence            44679999999999999999999876 34444455554433 2223477899999999643111      11     123


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      ...++++++++|+++++
T Consensus        82 ~~~~~~ii~v~d~~d~~   98 (182)
T d1moza_          82 YADTAAVIFVVDSTDKD   98 (182)
T ss_dssp             TTTEEEEEEEEETTCTT
T ss_pred             hccceeEEEEeeecccc
Confidence            45789999999987764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.01  E-value=4.5e-10  Score=84.80  Aligned_cols=81  Identities=21%  Similarity=0.287  Sum_probs=47.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCC------CceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE  163 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~------g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~  163 (192)
                      .+|+++|++|+|||||+|+|++.. .....+..      |.|.+..   +...+..+.++|+||..     +.....   
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~---   76 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEIA-STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-----DLIRAV---   76 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHH-----HHHHHH---
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHhc-CceecccccceeeeeeeccccccccccCCcccccccccccc-----ccccch---
Confidence            479999999999999999999863 22222222      2222221   22246778899999842     111111   


Q ss_pred             HHhhhccCceeEEEEEEecCCc
Q 029512          164 LVSISYRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       164 ~~~l~~~~~~~~v~~vvD~s~~  185 (192)
                         ......+|.+++++|++..
T Consensus        77 ---~~~l~~~d~~ilv~d~~~g   95 (179)
T d1wb1a4          77 ---VSAADIIDLALIVVDAKEG   95 (179)
T ss_dssp             ---HHHTTSCCEEEEEEETTTC
T ss_pred             ---hhhhhhccccccccccccc
Confidence               2233467999999999864

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.5e-09  Score=83.15  Aligned_cols=81  Identities=19%  Similarity=0.209  Sum_probs=53.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      .|+++|.+|||||||+|+|++. .........+.+.....+.  .+..+.++|+||..     ..-...+..+     ..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~-----~~   70 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG-QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE-----SLRFQLLDRF-----KS   70 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS-CCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH-----HHHHHHHHHH-----GG
T ss_pred             EEEEECCCCCCHHHHHHHHHcC-CCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccc-----cccchhhhhh-----hh
Confidence            7999999999999999999987 3344444434444333222  25679999999942     1112233333     34


Q ss_pred             ceeEEEEEEecCCc
Q 029512          172 FWSCTCFLIYIFYT  185 (192)
Q Consensus       172 ~~~~v~~vvD~s~~  185 (192)
                      .++.+++|+|+++.
T Consensus        71 ~~~~~i~v~D~~d~   84 (207)
T d2fh5b1          71 SARAVVFVVDSAAF   84 (207)
T ss_dssp             GEEEEEEEEETTTH
T ss_pred             hccccceEEEcccc
Confidence            67899999998753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.01  E-value=8.8e-10  Score=81.55  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .+|+++|.+|||||||+|.|.+........++.|.+.. .....+..+.+||+||-      ......|..+.     ..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~~~~~i~D~~G~------~~~~~~~~~~~-----~~   70 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQ------PRFRSMWERYC-----RG   70 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCS------HHHHTTHHHHH-----TT
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeeeEEEEEeecccc------ccccccccccc-----cc
Confidence            48999999999999999999986311111222232222 12224678999999993      22233343332     46


Q ss_pred             eeEEEEEEecCCce
Q 029512          173 WSCTCFLIYIFYTN  186 (192)
Q Consensus       173 ~~~v~~vvD~s~~~  186 (192)
                      ++.+++++|+++++
T Consensus        71 ~~~~i~v~d~~~~~   84 (164)
T d1zd9a1          71 VSAIVYMVDAADQE   84 (164)
T ss_dssp             CSEEEEEEETTCGG
T ss_pred             cchhhccccccccc
Confidence            78999999987754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.00  E-value=4.6e-10  Score=81.61  Aligned_cols=81  Identities=17%  Similarity=0.164  Sum_probs=51.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .+|+++|.+|||||||+|+|++.. ..........+ ..........+.++|+||....      ...+     ......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~------~~~~-----~~~~~~   67 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN-VETVEYKNISFTVWDVGGQDKI------RPLW-----RHYFQN   67 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC-SSCCCCCSSCC-EEEEECSSCEEEEEECCCCGGG------HHHH-----HHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC-CCccccceeeE-EEEEeeeeEEEEEecCCCcccc------hhhh-----hhhhcc
Confidence            379999999999999999999873 22222221111 1122234678999999996431      1111     122356


Q ss_pred             eeEEEEEEecCCce
Q 029512          173 WSCTCFLIYIFYTN  186 (192)
Q Consensus       173 ~~~v~~vvD~s~~~  186 (192)
                      .+.++++.|.++++
T Consensus        68 ~~~~i~~~d~~~~~   81 (160)
T d1r8sa_          68 TQGLIFVVDSNDRE   81 (160)
T ss_dssp             CSEEEEEEETTCGG
T ss_pred             ceeEEEEEEecChH
Confidence            78888888887654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=8e-10  Score=80.08  Aligned_cols=80  Identities=21%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW  173 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (192)
                      +|+++|.+|||||||+|+|++. .+....+..+.+.... ...+....++|++|......      .+     -......
T Consensus         2 KI~liG~~nvGKSSLln~l~~~-~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~   68 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSEEL-AIGNIKFTTFDLGGHIQARR------LW-----KDYFPEV   68 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS-CCCCCCCCCSCEEEEE-CCTTCCEEEEECCCSGGGGG------GG-----GGGCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CCCeeeceeeEeEEEe-ccCCeeEEEEeeccchhhhh------hH-----hhhhhhe
Confidence            7999999999999999999997 4555556666555432 23467889999998532110      01     1123445


Q ss_pred             eEEEEEEecCCce
Q 029512          174 SCTCFLIYIFYTN  186 (192)
Q Consensus       174 ~~v~~vvD~s~~~  186 (192)
                      +.+++++|.+++.
T Consensus        69 ~~~~~~~d~~~~~   81 (166)
T d2qtvb1          69 NGIVFLVDAADPE   81 (166)
T ss_dssp             SEEEEEEETTCGG
T ss_pred             eeeeeeccccchh
Confidence            6777777776543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.99  E-value=5.9e-10  Score=83.22  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||+|++.+. .........+.+.. ........+.++|+||....      ...+     -...+
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g~~~~------~~~~-----~~~~~   78 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDKI------RPLW-----RHYYT   78 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCC-CCEEEEEETTEEEE-EEEETTEEEEEEEESCCGGG------HHHH-----GGGTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC-CCCCccceeeeeEE-EeeccceeeEEecCCCcchh------hhHH-----Hhhhc
Confidence            468999999999999999999976 33333333333332 22234678999999996431      1122     23456


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      .++++++|+|++.++
T Consensus        79 ~~~~ii~v~D~s~~~   93 (173)
T d1e0sa_          79 GTQGLIFVVDCADRD   93 (173)
T ss_dssp             TCCEEEEEEETTCGG
T ss_pred             ccceEEEEEecccch
Confidence            789999999987764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.3e-09  Score=81.10  Aligned_cols=81  Identities=19%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||+|.+++..  ......+..+.+.  ..... +  ..+.+|||||-      +.....+.     
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------e~~~~~~~-----   72 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ------ERFRSITQ-----   72 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------GGGHHHHG-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC--CCCcccccccceEEEEEEEECCEEEEEEEEECCCc------hhhHHHHH-----
Confidence            589999999999999999999863  1222333333332  22222 2  45788999993      21112221     


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      ...+.++.+++|.|.++++
T Consensus        73 ~~~~~~~~~i~v~d~~~~~   91 (171)
T d2ew1a1          73 SYYRSANALILTYDITCEE   91 (171)
T ss_dssp             GGSTTCSEEEEEEETTCHH
T ss_pred             HHHhccceEEEeeecccch
Confidence            2346788899999987653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.2e-10  Score=82.91  Aligned_cols=82  Identities=11%  Similarity=-0.019  Sum_probs=46.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||+|.+.+.. ........+.+.......  ....+.+|||||-..      ....+..+     .
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~------~~~~~~~~-----~   69 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG------GRWLPGHC-----M   69 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------------CHHHH-----H
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCc-cCCcCCeeeeeecceeeccccccceeeeecccccc------cceecccc-----h
Confidence            479999999999999999999863 232222223332222222  235788999999421      11122222     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|.|.++++
T Consensus        70 ~~~d~~ilv~d~t~~~   85 (168)
T d2gjsa1          70 AMGDAYVIVYSVTDKG   85 (168)
T ss_dssp             TSCSEEEEEEETTCHH
T ss_pred             hhhhhhceeccccccc
Confidence            4678999999987654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=4e-10  Score=84.61  Aligned_cols=83  Identities=18%  Similarity=0.097  Sum_probs=51.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|+|++...........+.+........   ...+.+|||||......      .+..+     
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~-----   76 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT------LTPSY-----   76 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC------SHHHH-----
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHH------HHHHH-----
Confidence            47999999999999999999986321222222222222222222   35689999999532111      12222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|+|.++++
T Consensus        77 ~~~~~~ii~v~d~~~~~   93 (177)
T d1x3sa1          77 YRGAQGVILVYDVTRRD   93 (177)
T ss_dssp             HTTCCEEEEEEETTCHH
T ss_pred             HhcCCEEEEEEECCCcc
Confidence            24678889999876643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=1.2e-09  Score=83.21  Aligned_cols=83  Identities=18%  Similarity=0.079  Sum_probs=53.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|.+++........+..+.+.......   ....+.+|||||.-.-.      ..|.     ..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~------~~~~-----~~   75 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR------TITS-----SY   75 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT------CCCG-----GG
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhH------HHHH-----HH
Confidence            5899999999999999999997632233334445554443332   24578899999953210      0111     12


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|+|++.++
T Consensus        76 ~~~a~~~i~v~d~t~~~   92 (194)
T d2bcgy1          76 YRGSHGIIIVYDVTDQE   92 (194)
T ss_dssp             GTTCSEEEEEEETTCHH
T ss_pred             hccCCEEEEEEeCcchh
Confidence            35678888888887643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.93  E-value=3.6e-10  Score=87.66  Aligned_cols=81  Identities=21%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccC----cee-----ecCC------CCceeEEE---EEeeCCeEEEEECCCCCCCCCh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWG----VVR-----TSDK------PGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK  154 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~----~~~-----~~~~------~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~  154 (192)
                      .+|+++|..++|||||+++|+....    ...     ..+.      .|.|.+..   +...+.++.++||||..+    
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d----   79 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD----   79 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG----
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh----
Confidence            4899999999999999999974310    000     0111      15666543   344688999999999653    


Q ss_pred             HHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          155 EEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       ...+.      +.....+|.+++|||+..
T Consensus        80 -f~~~~------~~~~~~aD~avlVvda~~  102 (204)
T d2c78a3          80 -YIKNM------ITGAAQMDGAILVVSAAD  102 (204)
T ss_dssp             -GHHHH------HHHHTTCSSEEEEEETTT
T ss_pred             -hHHHH------HHHHHHCCEEEEEEECCC
Confidence             12222      334466899999999854

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1e-09  Score=81.93  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=52.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++.+...........+.+........   ...+.+|||||-..      ....+.     ..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~-----~~   74 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER------FRSVTR-----SY   74 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHHH-----TT
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchh------hhhhHH-----HH
Confidence            47999999999999999999976321111222233333222222   34688999999321      111221     22


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|.++++
T Consensus        75 ~~~~~~~i~v~d~~~~~   91 (174)
T d2bmea1          75 YRGAAGALLVYDITSRE   91 (174)
T ss_dssp             STTCSEEEEEEETTCHH
T ss_pred             hhhCCEEEEEEecccch
Confidence            45788999999987654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.9e-09  Score=78.86  Aligned_cols=82  Identities=16%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++.+...........+.+........   ...+.++||||-..      ....+..+     
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~------~~~~~~~~-----   73 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER------FRAVTRSY-----   73 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG------TCHHHHHH-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchh------HHHHHHHH-----
Confidence            48999999999999999999986321212222233333233222   34789999999321      11122222     


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      .+.+|++++|.|..++
T Consensus        74 ~~~~d~~ilv~d~~~~   89 (166)
T d1z0fa1          74 YRGAAGALMVYDITRR   89 (166)
T ss_dssp             HHTCSEEEEEEETTCH
T ss_pred             hcCCcEEEEEeccCch
Confidence            2357888888887654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1.5e-09  Score=81.71  Aligned_cols=82  Identities=13%  Similarity=0.114  Sum_probs=51.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|.+++........++.+.+........   ...+.++||||........           -..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-----------~~~   71 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG-----------VAF   71 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-----------CGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccc-----------ccc
Confidence            48999999999999999999986422222233444444433332   3468899999954311100           112


Q ss_pred             cCceeEEEEEEecCCc
Q 029512          170 RNFWSCTCFLIYIFYT  185 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~  185 (192)
                      ...++++++++|..++
T Consensus        72 ~~~~~~~i~~~d~~~~   87 (184)
T d1vg8a_          72 YRGADCCVLVFDVTAP   87 (184)
T ss_dssp             GTTCSEEEEEEETTCH
T ss_pred             ccCccEEEEeecccch
Confidence            3456777777777654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.5e-09  Score=80.20  Aligned_cols=83  Identities=17%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++++........++.+.+........   ...+.++||||.......      +..     .
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~-----~   71 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI------TKA-----Y   71 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC------CHH-----H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhh------hhh-----h
Confidence            47999999999999999999975322222333344333322222   356899999995431111      111     1


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|..+++
T Consensus        72 ~~~~~~~i~v~d~~~~~   88 (164)
T d1z2aa1          72 YRGAQACVLVFSTTDRE   88 (164)
T ss_dssp             HTTCCEEEEEEETTCHH
T ss_pred             hccCceEEEEEeccchh
Confidence            24678899999987654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.4e-09  Score=80.87  Aligned_cols=82  Identities=17%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEe-eC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~-~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .+|+++|.+|||||||++.+++.. ....  ....+.+....... .+  ..+.+|||||-..      ....+.     
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~------~~~~~~-----   74 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER------FRSVTH-----   74 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchh------hHHHHH-----
Confidence            489999999999999999998763 2211  12223333332222 23  4678999999421      111121     


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      ...+.+|++++|.|.++++
T Consensus        75 ~~~~~~d~~i~v~d~~~~~   93 (170)
T d2g6ba1          75 AYYRDAHALLLLYDVTNKA   93 (170)
T ss_dssp             CCGGGCSEEEEEEETTCHH
T ss_pred             HhhcCCceeEEEecCCccc
Confidence            1235678888998887654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.8e-09  Score=79.69  Aligned_cols=83  Identities=18%  Similarity=0.111  Sum_probs=50.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++.+...........+.+........   ...+.++||||--...      ..+.     ..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~------~~~~-----~~   73 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR------RITS-----AY   73 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT------CCCH-----HH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHH------HHHH-----HH
Confidence            48999999999999999999986322222233333333333332   2478899999932100      0111     11


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|.++++
T Consensus        74 ~~~~~~~i~v~d~~~~~   90 (175)
T d2f9la1          74 YRGAVGALLVYDIAKHL   90 (175)
T ss_dssp             HTTCSEEEEEEETTCHH
T ss_pred             hhccCeEEEEEECCCcc
Confidence            24578888888887654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=1.4e-09  Score=81.02  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=47.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-e---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI  167 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l  167 (192)
                      .++|+++|.+|||||||+|++++........+..+.+....... .   ...+.++||||-...      ...+     -
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~-----~   70 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF------QSLG-----V   70 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhh------hhHH-----H
Confidence            35899999999999999999998632222223333333322222 2   245789999994221      1111     2


Q ss_pred             hccCceeEEEEEEecCCce
Q 029512          168 SYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       168 ~~~~~~~~v~~vvD~s~~~  186 (192)
                      ...+.+++++++.|+++++
T Consensus        71 ~~~~~~~~~ilv~d~~~~~   89 (175)
T d1ky3a_          71 AFYRGADCCVLVYDVTNAS   89 (175)
T ss_dssp             CCSTTCCEEEEEEETTCHH
T ss_pred             HHhhccceEEEEeeccccc
Confidence            2345678888888876543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.9e-09  Score=78.44  Aligned_cols=82  Identities=17%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      +|+++|.+|||||||+|++++........+..+.+........   ...+.+|||+|....      ...+..+     .
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------~~~~~~~-----~   70 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF------RSLIPSY-----I   70 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG------GGGHHHH-----H
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchh------ccchHHH-----h
Confidence            7999999999999999999986321111222233333233322   356789999995321      1122222     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++.++++.|..+++
T Consensus        71 ~~~~~~ilv~d~~~~~   86 (164)
T d1yzqa1          71 RDSAAAVVVYDITNVN   86 (164)
T ss_dssp             TTCSEEEEEEETTCHH
T ss_pred             hccceEEEeecccccc
Confidence            4678888888887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.5e-09  Score=79.02  Aligned_cols=82  Identities=16%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEe-e--CCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELV  165 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~-~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~  165 (192)
                      ...+|+++|.+|||||||++.+++..   .......++.+..  ... .  ...+.+|||+|.......      +..+ 
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~------~~~~-   74 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM------REQY-   74 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC------HHHH-
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCC---CCcccccccccceeeEeccCCeeeeeeccccccccccccc------cchh-
Confidence            44689999999999999999999763   2223333332221  122 2  346788999997542221      1111 


Q ss_pred             hhhccCceeEEEEEEecCCce
Q 029512          166 SISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       166 ~l~~~~~~~~v~~vvD~s~~~  186 (192)
                          .+.++++++|.|.++++
T Consensus        75 ----~~~~~~~i~v~d~~~~~   91 (173)
T d2fn4a1          75 ----MRAGHGFLLVFAINDRQ   91 (173)
T ss_dssp             ----HHHCSEEEEEEETTCHH
T ss_pred             ----hccceeeeeeccccccc
Confidence                12468888888887654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.6e-09  Score=79.64  Aligned_cols=83  Identities=16%  Similarity=0.096  Sum_probs=51.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE-EEEe------------eCCeEEEEECCCCCCCCChHHHHH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFK------------LGTKLCLVDLPGYGFAYAKEEVKD  159 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~-~~~~------------~~~~~~lvDtPG~~~~~~~~~~~~  159 (192)
                      .+|+++|.+|||||||+|++++...........+.+... ....            ....+.++||||      .+....
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G------~e~~~~   79 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG------QERFRS   79 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES------HHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCc------chhhHH
Confidence            589999999999999999999763111111111111100 0000            124689999999      444444


Q ss_pred             HHHHHHhhhccCceeEEEEEEecCCce
Q 029512          160 AWEELVSISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       160 ~~~~~~~l~~~~~~~~v~~vvD~s~~~  186 (192)
                      .+..+.     +.++++++|.|.+++.
T Consensus        80 ~~~~~~-----~~~~~~i~v~d~~~~~  101 (186)
T d2f7sa1          80 LTTAFF-----RDAMGFLLMFDLTSQQ  101 (186)
T ss_dssp             HHHHHH-----TTCCEEEEEEETTCHH
T ss_pred             HHHHHH-----hcCCEEEEEEeccccc
Confidence            444442     4689999999987653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.86  E-value=5.5e-09  Score=77.34  Aligned_cols=82  Identities=18%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||+|+|.+. .........+.+.. .....+..+.++|++|.......      +..     ...
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~------~~~-----~~~   81 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN-EVVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESLRSS------WNT-----YYT   81 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT-SCEEEECCSCSSCE-EEEETTEEEEEEECCC----CGG------GHH-----HHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC-CCCccccccceeEE-EEeecceEEEEeccccccccccc------hhh-----hhc
Confidence            469999999999999999999997 55666666665544 33345788999999986432211      111     123


Q ss_pred             ceeEEEEEEecCCce
Q 029512          172 FWSCTCFLIYIFYTN  186 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~  186 (192)
                      ..+.+++++|.++.+
T Consensus        82 ~~~~~i~v~d~~d~~   96 (177)
T d1zj6a1          82 NTEFVIVVVDSTDRE   96 (177)
T ss_dssp             TCCEEEEEEETTCTT
T ss_pred             cceeeeeeccccccc
Confidence            467788888876543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.7e-09  Score=80.38  Aligned_cols=83  Identities=13%  Similarity=0.033  Sum_probs=52.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||++.+.+........+..+.........   ....+.+|||+|-...   .   ..+..     .
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~---~---~~~~~-----~   72 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF---A---SLAPM-----Y   72 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG---G---GGHHH-----H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhH---H---HHHHH-----H
Confidence            4899999999999999999998742222233444332222222   2357999999995321   1   11111     1


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|.++++
T Consensus        73 ~~~~~~~ilv~d~~~~~   89 (170)
T d1ek0a_          73 YRNAQAALVVYDVTKPQ   89 (170)
T ss_dssp             HTTCSEEEEEEETTCHH
T ss_pred             HhccceEEEEEeCCccc
Confidence            34678889999887654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=8.4e-10  Score=82.45  Aligned_cols=83  Identities=18%  Similarity=0.150  Sum_probs=34.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+++|++...........+.+........   ...+.+|||||-..          +..+. -..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~~-~~~   75 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT-TAY   75 (173)
T ss_dssp             EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------C-CTT
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHH-HHh
Confidence            57999999999999999999975311111111122222222222   34678899999421          11111 112


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|+|++++.
T Consensus        76 ~~~~~~~i~v~d~~~~~   92 (173)
T d2fu5c1          76 YRGAMGIMLVYDITNEK   92 (173)
T ss_dssp             TTTCSEEEEEEETTCHH
T ss_pred             ccCCCEEEEEEECCChh
Confidence            45679999999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.2e-09  Score=80.08  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=49.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++++........++.+..........   ...+.+|||||-..          +..+. -..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~-~~~   72 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLR-DGY   72 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHH----------HSSCG-GGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccc----------cceec-chh
Confidence            37999999999999999999876311111122222222222222   35789999999311          11111 123


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|.++++
T Consensus        73 ~~~~~~~ilv~d~~~~~   89 (170)
T d1i2ma_          73 YIQAQCAIIMFDVTSRV   89 (170)
T ss_dssp             TTTCCEEEEEEETTSGG
T ss_pred             cccccchhhcccccccc
Confidence            46789999999998765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.1e-09  Score=78.86  Aligned_cols=83  Identities=14%  Similarity=-0.078  Sum_probs=49.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||+|++++........++.+..........+  ..+.++||+|....   .   ..+..+     .
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~---~~~~~~-----~   71 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF---P---AMQRLS-----I   71 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC---H---HHHHHH-----H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccc---c---cccccc-----c
Confidence            489999999999999999999863111111222222221222223  45788999996431   1   111111     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.++++
T Consensus        72 ~~a~~~ilv~d~~~~~   87 (171)
T d2erxa1          72 SKGHAFILVYSITSRQ   87 (171)
T ss_dssp             HHCSEEEEEEETTCHH
T ss_pred             cceeEEEEEeeccccc
Confidence            3568899999987754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.1e-09  Score=78.32  Aligned_cols=83  Identities=14%  Similarity=0.050  Sum_probs=49.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||+|++++........+..+.+........  ...+.+||++|......      ....+     .
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~-----~   74 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGA------MREQY-----M   74 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCH------HHHHH-----H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccc------ccccc-----c
Confidence            58999999999999999999986312222223332222222222  35789999999654221      11111     1


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|.|.++++
T Consensus        75 ~~~~~~ilv~d~~~~~   90 (171)
T d2erya1          75 RTGEGFLLVFSVTDRG   90 (171)
T ss_dssp             HHCSEEEEEEETTCHH
T ss_pred             cccceEEEeecccccc
Confidence            3468899999988764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.81  E-value=8.8e-09  Score=76.51  Aligned_cols=84  Identities=12%  Similarity=0.002  Sum_probs=49.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||+|++++........++.+.+........  ...+.++|+||....   ..   .+..+     
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~---~~---~~~~~-----   72 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AA---IRDNY-----   72 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C---HH---HHHHH-----
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccch---hh---hhhhc-----
Confidence            458999999999999999999876321222222232211112222  356889999996431   11   12222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|..+++
T Consensus        73 ~~~~~~~ilv~d~~~~~   89 (168)
T d1u8za_          73 FRSGEGFLCVFSITEME   89 (168)
T ss_dssp             HHHCSEEEEEEETTCHH
T ss_pred             ccccceeEEEeeccchh
Confidence            23468889999887653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=4.6e-09  Score=77.75  Aligned_cols=83  Identities=13%  Similarity=0.025  Sum_probs=50.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++.+........+..+.+........   ...+.++||+|-....      ..+..+     
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~-----   73 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR------ALAPMY-----   73 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG------GGTHHH-----
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhh------HHHHHH-----
Confidence            48999999999999999999986322222223333333333332   3456799999953211      111111     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+++++++.|.++++
T Consensus        74 ~~~~~~~i~v~d~~~~~   90 (167)
T d1z0ja1          74 YRGSAAAIIVYDITKEE   90 (167)
T ss_dssp             HTTCSEEEEEEETTCHH
T ss_pred             HhhccceEEEeeechhh
Confidence            24568888888877653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.80  E-value=7.6e-09  Score=76.47  Aligned_cols=81  Identities=20%  Similarity=0.127  Sum_probs=47.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||+|+|++. ....+....+.+.... ...+..+..+|++|........           ....+
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~   79 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEEL-TIAGMTFTTFDLGGHIQARRVW-----------KNYLP   79 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE-EETTEEEEEEEECC----CCGG-----------GGGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CCcceecccccceeEE-EecccccccccccchhhhhhHH-----------hhhhc
Confidence            469999999999999999999987 3344444444444322 2246677888888865422111           12233


Q ss_pred             ceeEEEEEEecCCc
Q 029512          172 FWSCTCFLIYIFYT  185 (192)
Q Consensus       172 ~~~~v~~vvD~s~~  185 (192)
                      ..+.+++++|.+++
T Consensus        80 ~~~~~~~~~d~~d~   93 (186)
T d1f6ba_          80 AINGIVFLVDCADH   93 (186)
T ss_dssp             GCSEEEEEEETTCG
T ss_pred             ccceeeeeeeccCc
Confidence            45666777776554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.2e-09  Score=76.08  Aligned_cols=83  Identities=13%  Similarity=0.048  Sum_probs=51.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||++++.+........+..+..........   ...+.+|||+|-...      ...+     -..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~-----~~~   72 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF------HALG-----PIY   72 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------CCS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCccee------cccc-----hhh
Confidence            47999999999999999999986322222233333333333332   356889999995321      0111     123


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|.++++
T Consensus        73 ~~~~~~~i~v~d~~~~~   89 (167)
T d1z08a1          73 YRDSNGAILVYDITDED   89 (167)
T ss_dssp             STTCSEEEEEEETTCHH
T ss_pred             ccCCceeEEEEeCCchh
Confidence            45678889999887654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.80  E-value=1.1e-08  Score=74.38  Aligned_cols=56  Identities=25%  Similarity=0.226  Sum_probs=39.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG  149 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~  149 (192)
                      ..+|+++|.+|||||||+|++++. ....+....+.+. ......+..+.++|++|..
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   60 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG-EVVTTIPTIGFNV-ETVTYKNLKFQVWDLGGLT   60 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS-SCCCCCCCSSEEE-EEEEETTEEEEEEEECCCG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC-CCcceecccceee-eeeccCceEEEEeeccccc
Confidence            358999999999999999999997 3333333333222 2333457788999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6.2e-09  Score=77.27  Aligned_cols=83  Identities=16%  Similarity=0.022  Sum_probs=51.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||++.+++........+..+.+........   ...+.++||||-..      ....+..+     
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~------~~~~~~~~-----   75 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER------YHSLAPMY-----   75 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG------GGGGHHHH-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchh------hhhhHHHH-----
Confidence            48999999999999999999976322222333344333222222   35689999999432      11122222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++.++++.|.++.+
T Consensus        76 ~~~~~~~ilv~d~~~~~   92 (170)
T d1r2qa_          76 YRGAQAAIVVYDITNEE   92 (170)
T ss_dssp             HTTCSEEEEEEETTCHH
T ss_pred             hhCcceEEEEeccchhh
Confidence            24678888888876643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.79  E-value=9.5e-09  Score=79.06  Aligned_cols=81  Identities=16%  Similarity=0.196  Sum_probs=54.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc--------------CceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChH
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKE  155 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~--------------~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~  155 (192)
                      .+|+++|..++|||||+|+|++..              .........|.|.+...   ...+..+.++||||..     +
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~-----~   78 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA-----D   78 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-----H
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH-----H
Confidence            479999999999999999998521              00111222366766543   3347889999999932     1


Q ss_pred             HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          156 EVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      ...+    +  +.....+|++++|||+..
T Consensus        79 f~~~----~--~~~~~~aD~allVVda~~  101 (196)
T d1d2ea3          79 YVKN----M--ITGTAPLDGCILVVAAND  101 (196)
T ss_dssp             HHHH----H--HHTSSCCSEEEEEEETTT
T ss_pred             HHHH----H--HHHHhhcCeEEEEEEcCC
Confidence            1111    1  445677899999999964

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-08  Score=74.56  Aligned_cols=83  Identities=20%  Similarity=0.012  Sum_probs=49.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||+|++++........++.+..........  ...+.++||+|......-.           ....
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~-----------~~~~   73 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP-----------QTYS   73 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC-----------GGGT
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeeccccccccccccc-----------chhh
Confidence            48999999999999999999876321111222222111111112  3567889999964311100           1224


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+|++++|.|.++++
T Consensus        74 ~~~d~~ilv~d~~~~~   89 (167)
T d1xtqa1          74 IDINGYILVYSVTSIK   89 (167)
T ss_dssp             SSCCEEEEEEETTCHH
T ss_pred             hhhhhhhhhcccchhh
Confidence            5678888888877654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.78  E-value=4.5e-09  Score=85.40  Aligned_cols=26  Identities=38%  Similarity=0.607  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..|+|+++|..++|||||||+|+|..
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999999973

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.2e-08  Score=75.39  Aligned_cols=83  Identities=14%  Similarity=0.008  Sum_probs=49.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||+|++++...........+.+........  ...+.++|++|....   .   .....+     .
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~---~~~~~~-----~   72 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---S---AMRDQY-----M   72 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG---H---HHHHHH-----H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCcccc---c---cchhhh-----h
Confidence            47999999999999999999986311111222222222222222  356889999996431   1   111111     1


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.+++.
T Consensus        73 ~~~~~~iiv~d~~~~~   88 (166)
T d1ctqa_          73 RTGEGFLCVFAINNTK   88 (166)
T ss_dssp             HHCSEEEEEEETTCHH
T ss_pred             hcccccceeecccccc
Confidence            3457888888877653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.9e-08  Score=74.52  Aligned_cols=82  Identities=15%  Similarity=0.070  Sum_probs=51.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||++++++........++.+..........+  ..+.+|||+|-...   .. .   ..+     .
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~---~~-~---~~~-----~   70 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT---IQ-R---EGH-----M   70 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC---HH-H---HHH-----H
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeeccccccc---cc-c---hhh-----h
Confidence            589999999999999999999863122222222322222222223  56899999996431   11 1   111     1


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.++++
T Consensus        71 ~~~~~~ilv~d~~~~~   86 (168)
T d2atva1          71 RWGEGFVLVYDITDRG   86 (168)
T ss_dssp             HHCSEEEEEEETTCHH
T ss_pred             cccccceeecccCCcc
Confidence            3468899999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.2e-08  Score=76.20  Aligned_cols=83  Identities=11%  Similarity=-0.085  Sum_probs=49.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||++.+++........++.+.........  ....+.+|||+|...-..      .+     -...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~-----~~~~   71 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LR-----PLSY   71 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT------TG-----GGGC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcc------cc-----hhhc
Confidence            3799999999999999999998631111111111111111111  234699999999532100      11     1234


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.++++
T Consensus        72 ~~~~~~ilv~d~~~~~   87 (177)
T d1kmqa_          72 PDTDVILMCFSIDSPD   87 (177)
T ss_dssp             TTCSEEEEEEETTCHH
T ss_pred             ccchhhhhhcccchhH
Confidence            5778999999987764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.8e-09  Score=75.83  Aligned_cols=83  Identities=10%  Similarity=-0.039  Sum_probs=49.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||+|++++........+..+..........  ...+.+||++|....   ..   ....+     .
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~---~~~~~-----~   72 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF---AS---MRDLY-----I   72 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---HH---HHHHH-----H
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCcccc---cc---chHHH-----h
Confidence            48999999999999999999986322222222222212111111  356888999995431   11   11111     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+++++++.|.++++
T Consensus        73 ~~a~~~ilv~d~~~~~   88 (167)
T d1kaoa_          73 KNGQGFILVYSLVNQQ   88 (167)
T ss_dssp             HHCSEEEEEEETTCHH
T ss_pred             hcccceeeeeeecchh
Confidence            3568888888877643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.3e-08  Score=75.77  Aligned_cols=83  Identities=14%  Similarity=0.104  Sum_probs=50.6

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ..+|+++|.+|||||||+|.+++...........+.+........   ...+.++|++|....      ...+     -.
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------~~~~-----~~   74 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF------RSLR-----TP   74 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG------HHHH-----GG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCccee------hhhh-----hh
Confidence            458999999999999999999986322223333344443333332   345789999995321      1111     22


Q ss_pred             ccCceeEEEEEEecCCc
Q 029512          169 YRNFWSCTCFLIYIFYT  185 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~  185 (192)
                      ....++.++++.|.+++
T Consensus        75 ~~~~~~~~i~~~d~~~~   91 (174)
T d1wmsa_          75 FYRGSDCCLLTFSVDDS   91 (174)
T ss_dssp             GGTTCSEEEEEEETTCH
T ss_pred             hhhccceEEEEEeeecc
Confidence            34566788888887654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.9e-08  Score=75.77  Aligned_cols=85  Identities=11%  Similarity=-0.099  Sum_probs=51.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ...+|+++|.+|||||||+++++.........++.+..........  ...+.+|||+|-..-..      .+     -.
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~------~~-----~~   76 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR------LR-----PL   76 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT------TG-----GG
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhh------hh-----hh
Confidence            4568999999999999999999986311111122222222222222  24578999999532111      01     12


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.++++++|.|.++++
T Consensus        77 ~~~~a~~~ilv~d~t~~~   94 (185)
T d2atxa1          77 SYPMTDVFLICFSVVNPA   94 (185)
T ss_dssp             GCTTCSEEEEEEETTCHH
T ss_pred             cccccceeeeccccchHH
Confidence            345678999999988764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.75  E-value=1.2e-08  Score=77.72  Aligned_cols=82  Identities=21%  Similarity=0.357  Sum_probs=49.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC-ceeecCCCCceeEEEEEe--------------------------eCCeEEEEE
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLCLVD  144 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~-~~~~~~~~g~T~~~~~~~--------------------------~~~~~~lvD  144 (192)
                      ..+|+++|+.++|||||+|+|++... ........|.|++..+..                          ....+.++|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            34789999999999999999997521 111112234443321110                          123589999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          145 LPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       145 tPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      |||-      ....   ..+  ......+|.+++|+|+..
T Consensus        85 tPGh------~~f~---~~~--~~~~~~~d~~ilvvda~~  113 (195)
T d1kk1a3          85 APGH------EALM---TTM--LAGASLMDGAILVIAANE  113 (195)
T ss_dssp             CSSH------HHHH---HHH--HHCGGGCSEEEEEEETTS
T ss_pred             cchh------hhhh---HHh--hcccccccccccccchhh
Confidence            9992      1111   111  334456799999999765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.3e-08  Score=76.51  Aligned_cols=57  Identities=12%  Similarity=0.097  Sum_probs=37.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYG  149 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~  149 (192)
                      ..+|+++|.+|||||||++++++.. ........+.+........+  ..+.+|||+|-.
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~-f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~   63 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP   63 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSC-CCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCC-CCCcCCccceeEEEEeecCceEEEEEEeeccccc
Confidence            4699999999999999999999873 32222222222221122223  568899999953

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.3e-08  Score=73.45  Aligned_cols=84  Identities=19%  Similarity=0.078  Sum_probs=53.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|.+++...........+.+.......   ....+.++|++|...     .....+..+     
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----   72 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER-----FRKSMVQHY-----   72 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH-----HHTTTHHHH-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchh-----hccccceee-----
Confidence            4799999999999999999997632222223333333322222   356789999999532     101112222     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|.|.++++
T Consensus        73 ~~~~d~~ilv~d~~~~~   89 (165)
T d1z06a1          73 YRNVHAVVFVYDMTNMA   89 (165)
T ss_dssp             HTTCCEEEEEEETTCHH
T ss_pred             ecCCCceEEEEEeehhh
Confidence            24689999999998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.1e-08  Score=75.82  Aligned_cols=83  Identities=13%  Similarity=-0.038  Sum_probs=50.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||++++.+........++.+..........  ...+.+|||+|-...          ..+. -...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~-~~~~   72 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLR-PLSY   72 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTG-GGGC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhh----------hhhh-hhcc
Confidence            48999999999999999999986311111112121111112212  346899999995321          0111 1234


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.++++
T Consensus        73 ~~~~~~ilv~d~~~~~   88 (191)
T d2ngra_          73 PQTDVFLVCFSVVSPS   88 (191)
T ss_dssp             TTCSEEEEEEETTCHH
T ss_pred             cccceeecccccchHH
Confidence            5789999999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.3e-08  Score=75.78  Aligned_cols=83  Identities=16%  Similarity=0.045  Sum_probs=48.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      .+|+++|.+|||||||+|++++...........+.+........   ...+.++|++|-.....      .+...     
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~-----   72 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS------ITRSY-----   72 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC------CCHHH-----
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhh------HHHHH-----
Confidence            47999999999999999999986311111122222222222222   35789999999533111      11111     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.+|++++|.|..+++
T Consensus        73 ~~~~d~~ilv~d~~~~~   89 (173)
T d2a5ja1          73 YRGAAGALLVYDITRRE   89 (173)
T ss_dssp             HTTCSEEEEEEETTCHH
T ss_pred             hhccCEEEEEEeecChH
Confidence            23567888888876653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1e-08  Score=82.78  Aligned_cols=26  Identities=42%  Similarity=0.630  Sum_probs=24.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..|+|+++|..++|||||+|+|+|..
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999999973

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.8e-08  Score=75.69  Aligned_cols=85  Identities=14%  Similarity=-0.034  Sum_probs=51.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS  168 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~  168 (192)
                      ...+|+++|.+|||||||+|++++........++.+..........  ...+.+||++|-...          ..+. -.
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~-~~   72 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLR-PL   72 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTG-GG
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccc----------hhhh-hh
Confidence            3468999999999999999999986311211222222222222222  356789999984221          0111 12


Q ss_pred             ccCceeEEEEEEecCCce
Q 029512          169 YRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       169 ~~~~~~~v~~vvD~s~~~  186 (192)
                      ..+.++++++|.|.++++
T Consensus        73 ~~~~~~~~ilv~d~~~~~   90 (183)
T d1mh1a_          73 SYPQTDVSLICFSLVSPA   90 (183)
T ss_dssp             GCTTCSEEEEEEETTCHH
T ss_pred             cccccceeeeeeccchHH
Confidence            345678999999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=2.1e-08  Score=74.41  Aligned_cols=84  Identities=13%  Similarity=-0.053  Sum_probs=50.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY  169 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~  169 (192)
                      ..+|+++|.+|||||||++.+++........+..+.........  ....+.+||++|.......      +..+     
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~-----   72 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM------REQY-----   72 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS------HHHH-----
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccc------hhhh-----
Confidence            35899999999999999999998631111112222211111111  2466889999996432111      1111     


Q ss_pred             cCceeEEEEEEecCCce
Q 029512          170 RNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       170 ~~~~~~v~~vvD~s~~~  186 (192)
                      .+.++++++|.|.++++
T Consensus        73 ~~~~~~~llv~d~~d~~   89 (169)
T d1x1ra1          73 MRTGDGFLIVYSVTDKA   89 (169)
T ss_dssp             HHHCSEEEEEEETTCHH
T ss_pred             hhhccEEEEecccccch
Confidence            13468888888887654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.1e-08  Score=73.13  Aligned_cols=83  Identities=13%  Similarity=-0.009  Sum_probs=50.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||++.++.........+..+.........  ....+.+||++|.......      +..+     .
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~-----~   72 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM------RDLY-----M   72 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH------HHHH-----H
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCccccccc------cccc-----c
Confidence            4799999999999999999998732111112222111111111  1356899999997542221      1111     2


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.+++++++.|.++++
T Consensus        73 ~~~~~~ilv~d~~~~~   88 (167)
T d1c1ya_          73 KNGQGFALVYSITAQS   88 (167)
T ss_dssp             HHCSEEEEEEETTCHH
T ss_pred             cccceeEEeeeccchh
Confidence            3468899999987753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.62  E-value=1.7e-07  Score=71.78  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+|+++|..++|||||+|+|++.
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhh
Confidence            358999999999999999999974

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=8.2e-08  Score=71.94  Aligned_cols=83  Identities=16%  Similarity=0.021  Sum_probs=49.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~  170 (192)
                      .+|+++|.+|||||||++.++.........+..+.+........  ...+.+||++|-.....      ..     -...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~-----~~~~   71 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN------VR-----PLSY   71 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT------TG-----GGGC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccc------cc-----cchh
Confidence            37899999999999999999986311111111122222122111  35678999999532111      00     1234


Q ss_pred             CceeEEEEEEecCCce
Q 029512          171 NFWSCTCFLIYIFYTN  186 (192)
Q Consensus       171 ~~~~~v~~vvD~s~~~  186 (192)
                      +.++++++|.|.++++
T Consensus        72 ~~~~~~ilv~d~~~~~   87 (179)
T d1m7ba_          72 PDSDAVLICFDISRPE   87 (179)
T ss_dssp             TTCSEEEEEEETTCHH
T ss_pred             hhhhhhheeeecccCC
Confidence            6778899999987764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.53  E-value=7e-08  Score=75.47  Aligned_cols=83  Identities=20%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCc---------eeecCCCCc----------------------eeE---EEEEee
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDKPGL----------------------TQT---INFFKL  136 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~---------~~~~~~~g~----------------------T~~---~~~~~~  136 (192)
                      +.++++++|..++|||||+++|+.....         ...+...|+                      |.+   ..+...
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~   87 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA   87 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEecc
Confidence            4568999999999999999999743210         011111121                      211   122334


Q ss_pred             CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +..+.++||||..+     ...+.      +.....+|.+++|||+..
T Consensus        88 ~~~~~iiD~PGH~d-----fv~~~------~~g~~~aD~ailVvda~~  124 (222)
T d1zunb3          88 KRKFIIADTPGHEQ-----YTRNM------ATGASTCDLAIILVDARY  124 (222)
T ss_dssp             SEEEEEEECCCSGG-----GHHHH------HHHHTTCSEEEEEEETTT
T ss_pred             ceEEEEEeccchhh-----hhhhh------ccccccCceEEEEecccc
Confidence            67899999999642     12222      233456899999999854

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.3e-07  Score=70.23  Aligned_cols=84  Identities=17%  Similarity=0.093  Sum_probs=50.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCC--CCc-eeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK--PGL-TQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVS  166 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~--~g~-T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~  166 (192)
                      ..+|+++|.+|||||||+|.+++.. .......  .+. +........  ...+.+||+||...   .+       .++.
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g---~e-------~~~~   71 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG---EN-------EWLH   71 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH---HH-------HHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCc-CCccccccceeeecceeeeccCCceeeeeeeccccccc---cc-------cccc
Confidence            3589999999999999999999763 1111111  121 111122222  34578999987421   11       1111


Q ss_pred             hhccCceeEEEEEEecCCce
Q 029512          167 ISYRNFWSCTCFLIYIFYTN  186 (192)
Q Consensus       167 l~~~~~~~~v~~vvD~s~~~  186 (192)
                      ....+.+|++++|.|.+++.
T Consensus        72 ~~~~~~~~~~ilvfd~t~~~   91 (172)
T d2g3ya1          72 DHCMQVGDAYLIVYSITDRA   91 (172)
T ss_dssp             HCCCCCCSEEEEEEETTCHH
T ss_pred             cccccccceeeeeecccccc
Confidence            22356789999999987653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=2.3e-07  Score=74.84  Aligned_cols=81  Identities=16%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccC----ceeec------CC------CCceeE---EEEEeeCCeEEEEECCCCCCCCC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------DK------PGLTQT---INFFKLGTKLCLVDLPGYGFAYA  153 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------~~------~g~T~~---~~~~~~~~~~~lvDtPG~~~~~~  153 (192)
                      .+|+++|+.++|||||+.+|+-...    ...+.      +.      -|.|.+   ..+.+.+.++.++||||+.+-..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            3799999999999999999974211    01111      10      012221   23445688999999999876322


Q ss_pred             hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .-     ...      .+.+|..++|||+.+
T Consensus        87 e~-----~~~------l~~~D~avlVvda~~  106 (276)
T d2bv3a2          87 EV-----ERS------MRVLDGAIVVFDSSQ  106 (276)
T ss_dssp             TH-----HHH------HHHCCEEEEEEETTT
T ss_pred             HH-----HHH------HHhhhheEEeccccC
Confidence            11     111      134699999999864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.39  E-value=9.9e-07  Score=70.66  Aligned_cols=80  Identities=23%  Similarity=0.269  Sum_probs=50.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhccCc----eeec------C------CCCceeE---EEEEeeCCeEEEEECCCCCCCCCh
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTS------D------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYAK  154 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~~~----~~~~------~------~~g~T~~---~~~~~~~~~~~lvDtPG~~~~~~~  154 (192)
                      +|+++|..++|||||+.+|+...+.    ..+.      +      .-+.|..   ..+.+.+.++.++||||..+    
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d----   79 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD----   79 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG----
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh----
Confidence            7999999999999999999743211    0111      1      0122322   23444688999999999754    


Q ss_pred             HHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          155 EEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                       ...+....      .+.+|..++|||+..
T Consensus        80 -F~~e~~~a------l~~~D~avlvvda~~  102 (267)
T d2dy1a2          80 -FVGEIRGA------LEAADAALVAVSAEA  102 (267)
T ss_dssp             -GHHHHHHH------HHHCSEEEEEEETTT
T ss_pred             -hhhhhhhh------hcccCceEEEeeccC
Confidence             11222222      234699999999863

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=4.8e-07  Score=67.77  Aligned_cols=82  Identities=18%  Similarity=0.262  Sum_probs=52.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN  171 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~  171 (192)
                      ..+|+++|.+|||||||++.+...   ....++.|.... .+...+..+.++|++|...      ....|     ....+
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~---~~~~pTiG~~~~-~~~~~~~~~~~~D~~gq~~------~~~~~-----~~~~~   66 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRII---HGQDPTKGIHEY-DFEIKNVPFKMVDVGGQRS------ERKRW-----FECFD   66 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH---HSCCCCSSEEEE-EEEETTEEEEEEEECC-------------C-----TTSCT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC---CCCCCeeeeEEE-EEeeeeeeeeeecccceee------ecccc-----ccccc
Confidence            458999999999999999999432   122334453322 2333477899999999532      11112     23446


Q ss_pred             ceeEEEEEEecCCceEE
Q 029512          172 FWSCTCFLIYIFYTNVI  188 (192)
Q Consensus       172 ~~~~v~~vvD~s~~~~~  188 (192)
                      .++.+++++|.++....
T Consensus        67 ~~~~~~~~~~~~~~~~~   83 (200)
T d1zcba2          67 SVTSILFLVSSSEFDQV   83 (200)
T ss_dssp             TCCEEEEEEETTCTTCE
T ss_pred             ccceeEEEEEcCCccee
Confidence            67888999998876544

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=1e-06  Score=65.61  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=55.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .+|+++|.+|||||||++.+.... .. ..++-|.... ........+.++|++|.....      ..|     ....+.
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~-~~-~~pTiG~~~~-~~~~~~~~~~~~d~~g~~~~~------~~~-----~~~~~~   68 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH-GS-GVPTTGIIEY-PFDLQSVIFRMVDVGGQRSER------RKW-----IHCFEN   68 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT-SS-CCCCCSCEEE-EEECSSCEEEEEECCCSTTGG------GGG-----GGGCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CC-CCceeeEEEE-EEeccceeeeecccccccccc------ccc-----cccccc
Confidence            489999999999999999998763 22 2233343221 223347789999999964311      122     223456


Q ss_pred             eeEEEEEEecCCceEE
Q 029512          173 WSCTCFLIYIFYTNVI  188 (192)
Q Consensus       173 ~~~v~~vvD~s~~~~~  188 (192)
                      ++.+++++|.++.+.+
T Consensus        69 ~~~~i~~~~~~~~~~~   84 (200)
T d2bcjq2          69 VTSIMFLVALSEYDQV   84 (200)
T ss_dssp             CSEEEEEEEGGGGGCB
T ss_pred             cceeeEeeeccchhhh
Confidence            7889999999887654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=6e-07  Score=66.64  Aligned_cols=78  Identities=14%  Similarity=0.227  Sum_probs=52.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .+|+++|..|||||||++.+.... ..    ..|.. ..........+.+|||+|-..      ....|     -...+.
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~-~~----t~~~~-~~~~~~~~~~~~i~D~~Gq~~------~~~~~-----~~~~~~   65 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIH-EA----GTGIV-ETHFTFKDLHFKMFDVGGQRS------ERKKW-----IHCFEG   65 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH-SC----CCSEE-EEEEEETTEEEEEEEECCSGG------GGGGG-----GGGCTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC-CC----CccEE-EEEEEeeeeeeeeeccccccc------cccch-----hhcccC
Confidence            489999999999999999998652 11    12221 122333477899999999432      12222     233467


Q ss_pred             eeEEEEEEecCCceE
Q 029512          173 WSCTCFLIYIFYTNV  187 (192)
Q Consensus       173 ~~~v~~vvD~s~~~~  187 (192)
                      +++++++.|.++.+.
T Consensus        66 ~~~~i~v~d~~~~~~   80 (195)
T d1svsa1          66 VTAIIFCVALSDYDL   80 (195)
T ss_dssp             CSEEEEEEEGGGGGC
T ss_pred             CceeeeEEeecccch
Confidence            899999999876653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=1.1e-06  Score=69.18  Aligned_cols=81  Identities=21%  Similarity=0.280  Sum_probs=54.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCc-----------------------------eeecCCCCceeEE---EEEeeCCeE
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTI---NFFKLGTKL  140 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~-----------------------------~~~~~~~g~T~~~---~~~~~~~~~  140 (192)
                      .+|+++|..++|||||+.+|+-....                             .......|.|.+.   .+...+.++
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i   86 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV   86 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence            58999999999999999999631100                             0000112444432   345568899


Q ss_pred             EEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          141 CLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       141 ~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .++||||..+     ...+.      +.....+|..++|||+..
T Consensus        87 ~iiDtPGH~d-----f~~~~------~~g~~~~D~ailvvda~~  119 (239)
T d1f60a3          87 TVIDAPGHRD-----FIKNM------ITGTSQADCAILIIAGGV  119 (239)
T ss_dssp             EEEECCCCTT-----HHHHH------HHSSSCCSEEEEEEECSH
T ss_pred             EEEECCCcHH-----HHHHH------HHHHHHhCEEEEEEECCC
Confidence            9999999653     11222      456778899999999863

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.18  E-value=2.8e-06  Score=65.52  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF  172 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~  172 (192)
                      .+|+++|.+|||||||++.+....    ..++.|.... .+...+..+.++|+.|-....      ..|     ....+.
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~-~~~~~~~~~~~~D~~Gq~~~r------~~w-----~~~~~~   70 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFET-KFQVDKVNFHMFDVGGQRDER------RKW-----IQCFND   70 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEE-EEEETTEEEEEEECCCSTTTT------TGG-----GGGCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEE-EEEECcEEEEEEecCccceec------cch-----hhhccc
Confidence            489999999999999999997542    2234454332 233357889999999954311      123     223456


Q ss_pred             eeEEEEEEecCCceEE
Q 029512          173 WSCTCFLIYIFYTNVI  188 (192)
Q Consensus       173 ~~~v~~vvD~s~~~~~  188 (192)
                      ++.+++++|.+..+.+
T Consensus        71 ~~~ii~v~d~s~~~~~   86 (221)
T d1azta2          71 VTAIIFVVASSSYNMV   86 (221)
T ss_dssp             CSEEEEEEETTGGGCB
T ss_pred             ccceEEEEEccccccc
Confidence            7899999998876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.11  E-value=2.1e-06  Score=66.59  Aligned_cols=82  Identities=17%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCc-----------------------------eeecCCCCceeEEE---EEeeCCe
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKLGTK  139 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~-----------------------------~~~~~~~g~T~~~~---~~~~~~~  139 (192)
                      ..+|+++|..++|||||+.+|+.....                             .......|.|.+..   +...+..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            348999999999999999999631100                             01112234444332   2234788


Q ss_pred             EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      +.++||||..+     ..    ..+  ......+|..++|||+..
T Consensus        83 i~iiDtPGH~d-----f~----~~~--~~g~~~~D~allVVda~~  116 (224)
T d1jnya3          83 FTIIDAPGHRD-----FV----KNM--ITGASQADAAILVVSAKK  116 (224)
T ss_dssp             EEECCCSSSTT-----HH----HHH--HHTSSCCSEEEEEEECST
T ss_pred             eEEeeCCCcHH-----HH----HHH--HHHHHhhceEEEEEeccc
Confidence            99999999643     11    112  445667899999999864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.04  E-value=2.8e-06  Score=66.98  Aligned_cols=81  Identities=21%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCc-----------------------------eeecCCCCceeEEE---EEeeCCeE
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKLGTKL  140 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~-----------------------------~~~~~~~g~T~~~~---~~~~~~~~  140 (192)
                      ..|+++|..++|||||+.+|+.....                             .......|.|.+..   +...+..+
T Consensus        25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i  104 (245)
T d1r5ba3          25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF  104 (245)
T ss_dssp             EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred             eEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccccee
Confidence            47999999999999999999532100                             00111122333221   22346789


Q ss_pred             EEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512          141 CLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY  184 (192)
Q Consensus       141 ~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~  184 (192)
                      .++||||-.+-     ..+.      +.....+|.+++|||+..
T Consensus       105 ~~iDtPGH~df-----~~~~------~~g~~~aD~ailVVda~~  137 (245)
T d1r5ba3         105 SLLDAPGHKGY-----VTNM------INGASQADIGVLVISARR  137 (245)
T ss_dssp             EECCCCC----------------------TTSCSEEEEEEECST
T ss_pred             eeecccccccc-----hhhh------hhhhhhhcceeeEEEcCC
Confidence            99999996431     1111      445567899999999964

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=1.9e-06  Score=71.31  Aligned_cols=21  Identities=19%  Similarity=0.444  Sum_probs=19.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      +|+++|..++|||||+.+|+.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            699999999999999999974

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.87  E-value=1e-05  Score=61.89  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      .|+++|++|+|||||+++|+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            589999999999999999984

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.5e-05  Score=60.94  Aligned_cols=59  Identities=25%  Similarity=0.284  Sum_probs=40.7

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEEe------eCCeEEEEECCCCCC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFK------LGTKLCLVDLPGYGF  150 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~~------~~~~~~lvDtPG~~~  150 (192)
                      ...|+++|+..+|||+|+|.|++....-.++. ...+|+-.-...      .+..+.++||.|+..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            45889999999999999999998742111221 223555543211      245799999999976

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.72  E-value=2e-05  Score=60.78  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=16.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+++|++||||||.+-.|...
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            346788999999999999999853

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.67  E-value=0.00018  Score=55.30  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+++|++||||||.+-.|+..
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3447799999999999999998843

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.57  E-value=0.00025  Score=54.14  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ...++++|++||||||.+-.|..
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999874

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.57  E-value=1.7e-05  Score=57.75  Aligned_cols=22  Identities=23%  Similarity=0.602  Sum_probs=20.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +|+|+|++|+|||||++.|++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhc
Confidence            7999999999999999999975

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.54  E-value=0.00018  Score=55.01  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=18.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      .++++|++||||||.+-.|..
T Consensus        12 vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            568899999999999999984

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.2e-05  Score=56.44  Aligned_cols=23  Identities=39%  Similarity=0.670  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .|.++|+|.+|+|||||+|.|..
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999999985

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=3.8e-05  Score=57.23  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=27.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN  132 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~  132 (192)
                      ..|+|+|++|+||+||++.|+...........+.|||.+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R   43 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK   43 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCC
Confidence            3689999999999999999997532223333444555443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=6.4e-05  Score=57.82  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..|+++|++||||||.+-.|..
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999984

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.33  E-value=7.1e-05  Score=53.96  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..+|+|+|++|+|||||.++|....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999999764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=8.4e-05  Score=60.71  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..++|+|.|+||+|||||+|+|..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHH
Confidence            467999999999999999999984

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.20  E-value=9.5e-05  Score=53.02  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++|+|+|+||+||||+.+.|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999865

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.19  E-value=0.00011  Score=57.90  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|+|-
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcc
Confidence            3458999999999999999999985

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00011  Score=57.57  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34589999999999999999999853

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.16  E-value=0.00011  Score=54.23  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..|+|+|++|||||||++.|....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            468899999999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.14  E-value=0.0001  Score=57.64  Aligned_cols=26  Identities=42%  Similarity=0.547  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34589999999999999999999853

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00013  Score=57.34  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            35589999999999999999999853

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.10  E-value=0.00018  Score=51.63  Aligned_cols=26  Identities=27%  Similarity=0.449  Sum_probs=23.3

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +...+|+|.|++|+||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.0001  Score=54.82  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      -|+|+|++||||+||++.|+...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999998753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.09  E-value=0.00013  Score=55.34  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcc
Confidence            448899999999999999999985

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00016  Score=56.22  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|.|-
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3458999999999999999999975

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00016  Score=57.70  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|+|-.
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            45589999999999999999999853

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.05  E-value=0.00017  Score=56.00  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.++|+|++|+|||||++.|.|-
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            3458999999999999999999985

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00019  Score=54.48  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..++|+|+|||||+||++.|+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            468899999999999999999763

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.00021  Score=51.74  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..++++|.+|+|||||++.|..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            3578999999999999999975

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=0.00023  Score=55.55  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|-.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            34488999999999999999999853

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.0002  Score=53.46  Aligned_cols=21  Identities=33%  Similarity=0.642  Sum_probs=19.4

Q ss_pred             EEEEecCCCcHHHHHHHHhhc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~  115 (192)
                      |+|+|++|+||+||.+.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00027  Score=55.09  Aligned_cols=26  Identities=15%  Similarity=0.275  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||+|.|+|-.
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34588999999999999999999863

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.91  E-value=0.00022  Score=55.77  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.9

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .++++|++|+|||||++.|.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999999999863

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.90  E-value=0.00026  Score=55.18  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|+|-.
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4588999999999999999999863

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.00023  Score=52.73  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+++|.||+||||+.++|+..
T Consensus         4 li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999853

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.89  E-value=0.00025  Score=55.43  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|.|-.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            4488999999999999999999863

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00022  Score=55.32  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++++|++|+|||||++.|+|-
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999985

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.88  E-value=0.00021  Score=55.43  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++++|++|+|||||++.|.|-.
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Confidence            4489999999999999999999863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.88  E-value=0.00023  Score=51.48  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      |+|+|+|.+||||||+-+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.87  E-value=0.00018  Score=56.67  Aligned_cols=26  Identities=35%  Similarity=0.553  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+-.++|+|++|+|||||++.|.|-.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            34599999999999999999999753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.86  E-value=0.00037  Score=51.36  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+.+|+|+|+||+||||....|....
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00033  Score=54.68  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|.|-.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCc
Confidence            4488999999999999999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.83  E-value=0.0003  Score=49.56  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+++|.||+||||+.+.|...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5788999999999999998754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.79  E-value=0.00044  Score=50.97  Aligned_cols=25  Identities=12%  Similarity=0.313  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..+|+|+|+||+||||+.+.|....
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.76  E-value=0.00039  Score=54.58  Aligned_cols=24  Identities=25%  Similarity=0.309  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +-.++|+|++|+|||||++.|+|.
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCC
Confidence            448899999999999999999985

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.75  E-value=0.00043  Score=54.55  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|.|-.
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4589999999999999999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.75  E-value=0.00049  Score=50.76  Aligned_cols=26  Identities=15%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..+.|+|+|+||+||||+...|+...
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999998653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.74  E-value=0.00038  Score=49.45  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .|+|+|+||+||||+.+.|....
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58899999999999999999653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.72  E-value=0.00049  Score=49.14  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+..|.|+|.||+||||+-++|...
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568889999999999999999854

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00043  Score=49.55  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|.|.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.66  E-value=0.0003  Score=55.02  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +-.++|+|++|+|||||++.|.|-.
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4589999999999999999999853

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00058  Score=47.81  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|+|++|+||||+-+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999865

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.60  E-value=0.00064  Score=48.80  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..|+|.|.+|+||||+.+.|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.60  E-value=0.00087  Score=49.77  Aligned_cols=27  Identities=22%  Similarity=0.422  Sum_probs=23.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ....+|+|+|+||+||||+...|+...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999999764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.59  E-value=0.00056  Score=55.50  Aligned_cols=24  Identities=29%  Similarity=0.464  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..++|+|.|.||+|||||++.|..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            457999999999999999999985

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.0012  Score=48.34  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +....|+++|.||+||||+...|+...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            345689999999999999999997653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.57  E-value=0.0022  Score=49.70  Aligned_cols=23  Identities=13%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|.|+||+|||++.++|++.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            46999999999999999999875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0063  Score=46.20  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.|.++|.|.-|+|||||+|.|+..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4578899999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.54  E-value=0.00077  Score=49.04  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +...|+|.|.+|+|||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345788999999999999999975

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.00099  Score=50.68  Aligned_cols=26  Identities=15%  Similarity=0.431  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..+.+++.|+||+||||+.+++++..
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.001  Score=49.03  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +..+.|+|+|+||+||||+...|+...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.48  E-value=0.00081  Score=48.04  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +..|+|.|+||+||||+.+.|...
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.47  E-value=0.00077  Score=48.86  Aligned_cols=23  Identities=13%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +|+|+|+||+||||+...|....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999997653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00096  Score=47.58  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=21.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++|+|.||+||||+.+.|...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788999999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.0036  Score=47.52  Aligned_cols=27  Identities=11%  Similarity=0.252  Sum_probs=23.4

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...+.++|.|+||+||||+..+|++..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            445689999999999999999999753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0019  Score=50.96  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..++|||+||||||+++..|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            48899999999999999999975

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.35  E-value=0.00095  Score=48.09  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|.|.+||||||+.+.|...
T Consensus         3 iivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677899999999999999753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.35  E-value=0.0012  Score=46.86  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36788899999999999999975

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.27  E-value=0.0011  Score=47.86  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=20.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +|+|+|.+|+||||+-+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.24  E-value=0.0012  Score=48.13  Aligned_cols=23  Identities=17%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +|+|+|+||+||||+...|....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.20  E-value=0.0019  Score=47.59  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+.|.|+|+||+||||+...|....
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.17  E-value=0.0015  Score=47.53  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +|+|+|+||+||||+.+.|....
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.16  E-value=0.0014  Score=53.03  Aligned_cols=23  Identities=13%  Similarity=0.393  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+++|.+|+|||||+|+|++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            36899999999999999999975

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0015  Score=47.38  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +|+++|+||+||||..+.|...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.14  E-value=0.0012  Score=50.60  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      -|+|.|+||+|||||..+|.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0015  Score=47.86  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      +.|+|+|+||+||||....|....
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0011  Score=48.21  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=21.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .+..|.|+|.||+||||+-+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            355788999999999999999975

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0023  Score=46.64  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+|+|+|+||+||||+...|....
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0026  Score=48.14  Aligned_cols=25  Identities=20%  Similarity=0.498  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .+.+++.|+||+||||+.+.|....
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhcc
Confidence            4579999999999999999999653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0061  Score=47.46  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ...+++.|+||+|||++.++|....
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHc
Confidence            3468999999999999999999753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.83  E-value=0.0022  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+++|.+|+||||+-+.|...
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.82  E-value=0.0032  Score=47.63  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....++|.|+||+|||++++.|...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0029  Score=46.79  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhccC
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQWG  117 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~~  117 (192)
                      .|.|+|.|+||+||||+-..|.....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36888999999999999999997653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0026  Score=47.39  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.70  E-value=0.0036  Score=47.10  Aligned_cols=24  Identities=42%  Similarity=0.736  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.++|.|++|+||||+++.+...
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999863

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.66  E-value=0.0028  Score=46.43  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..|+|-|..||||||+++.|....
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.0054  Score=45.93  Aligned_cols=24  Identities=42%  Similarity=0.703  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.+.|.|++|+||||++..++..
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHH
Confidence            356899999999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.29  E-value=0.0094  Score=46.03  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .-+++.|+||+|||++.++|.+..
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc
Confidence            358999999999999999999754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.00095  Score=48.07  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=17.9

Q ss_pred             eEEEEecCCCcHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~  113 (192)
                      ..+|+|++|+||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45778999999999999996

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.28  E-value=0.0033  Score=47.85  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=18.2

Q ss_pred             EEEEecCCCcHHHHHHHHhhc
Q 029512           95 IAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        95 i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.+.|+||+|||+++++++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999999964

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.15  E-value=0.0069  Score=45.72  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..++|.|++|+|||||++.++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Confidence            47889999999999999998753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.007  Score=45.32  Aligned_cols=23  Identities=22%  Similarity=0.631  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .+.++|.|++|+||||+.+.+..
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHHHH
Confidence            45689999999999999998875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.05  E-value=0.0069  Score=48.19  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..-++++|+||||||.|.++|++.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            347889999999999999999865

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.0077  Score=44.98  Aligned_cols=24  Identities=42%  Similarity=0.720  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.++|.|++|+||||+...++..
T Consensus        35 ~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          35 LPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHH
Confidence            346899999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.00  E-value=0.01  Score=45.88  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .-+++.|+||+|||++.+++.+..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            358999999999999999999753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.94  E-value=0.012  Score=48.47  Aligned_cols=22  Identities=23%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++|||.||||||+++..|...
T Consensus        45 n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHH
Confidence            5699999999999999988865

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.0089  Score=44.81  Aligned_cols=78  Identities=14%  Similarity=0.253  Sum_probs=43.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCC-CCChHHHHHHHHHHHh-hhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF-AYAKEEVKDAWEELVS-ISYR  170 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~-~~~~~~~~~~~~~~~~-l~~~  170 (192)
                      ..+++||+||||||+++..|...-  . .+..|..-       .+..++-+|+..+.. .....+..+.+..+++ +...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri--~-~~~vp~~L-------~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~  113 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI--I-NGEVPEGL-------KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ  113 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH--H-HTCSCGGG-------TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH--H-hCCCCHHH-------cCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcC
Confidence            378999999999999999999752  1 12222111       134455677666533 2223334444444443 2111


Q ss_pred             CceeEEEEEEec
Q 029512          171 NFWSCTCFLIYI  182 (192)
Q Consensus       171 ~~~~~v~~vvD~  182 (192)
                        -.-+++++|-
T Consensus       114 --~~~iILfIDe  123 (195)
T d1jbka_         114 --EGNVILFIDE  123 (195)
T ss_dssp             --TTTEEEEEET
T ss_pred             --CCcEEEEcch
Confidence              1235666664

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.75  E-value=0.011  Score=43.78  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhccC
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQWG  117 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~~  117 (192)
                      ..|+|-|+||+||||.-..|.....
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688889999999999999997643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.75  E-value=0.0091  Score=44.85  Aligned_cols=24  Identities=29%  Similarity=0.260  Sum_probs=21.3

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .+..|.+.|.||+|||||-+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.73  E-value=0.0083  Score=44.03  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=19.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      .|+|-|..|+||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.63  E-value=0.0099  Score=44.82  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.++|.|++|+||||++.+++..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999999864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.006  Score=45.71  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ...|+|-|..||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.54  E-value=0.0063  Score=47.41  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=18.2

Q ss_pred             eEEEEecCCCcHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~  113 (192)
                      ..+|+|+.|+||||++.||.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            56899999999999999995

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.40  E-value=0.012  Score=42.88  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..|+|.|.+|+||||+.+.|..
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998865

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.014  Score=45.36  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..-|+|.|++|+|||+|.+++++..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3469999999999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.19  E-value=0.0082  Score=47.69  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=17.8

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .|.|+|.|.+|+||||+.++|..
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999998865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.12  E-value=0.037  Score=46.22  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ....|+++|+||||||-|.++|.+.
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.02  Score=42.31  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .-|++-|..|+||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688899999999999999885

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.02  Score=42.77  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.-|+|-|..|+||||+++.|...
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHH
Confidence            356888899999999999888753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.013  Score=47.22  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             eEEEEecCCCcHHHHHHHHh
Q 029512           94 EIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~  113 (192)
                      ..+|+|++|+||||++.||.
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            45788999999999999984

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.90  E-value=0.019  Score=46.76  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ....+++.|+||+|||++.++|++..
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34589999999999999999999753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.90  E-value=0.015  Score=48.06  Aligned_cols=23  Identities=30%  Similarity=0.309  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      --|++.|+||+||||++.+++..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            37899999999999999999975

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.81  E-value=0.02  Score=42.15  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..-|++.|++|+||||+.-.|...
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            346899999999999999998876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.018  Score=45.95  Aligned_cols=24  Identities=33%  Similarity=0.288  Sum_probs=20.9

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ....|+|.|.+|+||||+-+.|..
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHH
Confidence            446899999999999999988865

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.74  E-value=0.02  Score=42.09  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..-|++.|.+|+||||+.-.|...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            346899999999999999998876

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.57  E-value=0.029  Score=40.94  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.-|++.|++|+||||+.-.|...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            447899999999999999888876

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.043  Score=43.59  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..++++|+||||||.|..+|...
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            36889999999999999999854

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.022  Score=40.72  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=21.1

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+-.+.|.|+||+|||+|...++..
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            3458899999999999999888753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.022  Score=42.66  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .-|+|=|..||||||+++.|...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            36889999999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.38  E-value=0.025  Score=42.43  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.|.|++|+|||.|+++++..
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999975

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.97  E-value=0.026  Score=41.68  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.4

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..|+|.|..|+||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.034  Score=41.19  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=19.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .|+|.|.+|+||||..+.|...
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7899999999999999988754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.90  E-value=0.041  Score=41.05  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +.-|++-|..|+||||+++.|...
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHH
Confidence            567999999999999999999754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.88  E-value=0.027  Score=42.41  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .-.+++.|++|+|||++.++|.+-
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            458999999999999999999865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.75  E-value=0.036  Score=43.76  Aligned_cols=22  Identities=27%  Similarity=0.169  Sum_probs=19.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~  113 (192)
                      ...|+|.|.+|+|||||.+.|.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHH
Confidence            4588999999999999998775

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.60  E-value=0.043  Score=44.62  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      +...++++|+||||||-|.++|+..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhh
Confidence            3557999999999999999999753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.14  E-value=0.042  Score=40.43  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=20.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .+-.+.|.|+||+|||+|...++-
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            345899999999999999987764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.05  E-value=0.051  Score=40.66  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhcc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      ..|+|.|..|+||||..+.|....
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            368999999999999999997653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.96  E-value=0.18  Score=36.04  Aligned_cols=25  Identities=12%  Similarity=0.226  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQW  116 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~~  116 (192)
                      .-.|.|.|.=|+|||||.+.++...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            4478999999999999999999764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.81  E-value=0.025  Score=44.89  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhh
Q 029512           94 EIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~  114 (192)
                      .++++|.||+|||+|.+++.+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            789999999999999999874

>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: TrmE connector domain
family: TrmE connector domain
domain: TrmE connector domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.36  E-value=3.2e-05  Score=57.42  Aligned_cols=99  Identities=20%  Similarity=0.133  Sum_probs=52.2

Q ss_pred             CCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcccccCCCCCCCCeEEE
Q 029512           18 PSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAF   97 (192)
Q Consensus        18 ~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l   97 (192)
                      .+.+.+......+  |..++.+.. .+++.+|||+|+.+. ...-...+. .+...-..+...........  .+     
T Consensus        27 ~l~G~ls~~i~~i--r~~L~~l~a-~iEa~iDf~ee~~~~-~~~~~~~l~-~i~~~l~~li~~~~~g~~l~--~g-----   94 (173)
T d1xzpa1          27 NLKGGLRDFVDSL--RRELIEVLA-EIRVELDYPDEIETN-TGEVVTRLE-RIKEKLTEELKKADAGILLN--RG-----   94 (173)
T ss_dssp             HHTTHHHHHHHHH--HHHHHHHHH-HHHHHHHSTTTCCCC-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HC-----
T ss_pred             HcCCchhHHHHHH--HHHHHHHHH-HHHHhcCCccccccc-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--hh-----
Confidence            3344444555555  666777776 799999999875332 111111221 11111111222222111000  01     


Q ss_pred             EecCCCcHHHHHHHHhhccCceeecCCCCceeEE
Q 029512           98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI  131 (192)
Q Consensus        98 vG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~  131 (192)
                      ++..|+|||||+|.+.+.   +.+.+.+++|++.
T Consensus        95 ~~vvn~Gkssl~n~~r~~---~~v~~~~~t~~d~  125 (173)
T d1xzpa1          95 QEIFERGSDSLITNLRQK---QLLENVKGHLEDA  125 (173)
T ss_dssp             HHHHHHHTTCSCCSHHHH---HHHHHHHHHHHHH
T ss_pred             hcccccccchhhcchhhH---HHHHHHHHHHHHH
Confidence            123489999999999765   5677778888774

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.056  Score=43.91  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+++++|.||+|||++++.|...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            47999999999999999877743

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.89  E-value=0.073  Score=39.50  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=20.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ..-.+.|.|+||+|||+|...++.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            345889999999999999988874

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.088  Score=38.92  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      -+++.|++|+||+|+...+...
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            4899999999999999988763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=90.61  E-value=0.089  Score=40.02  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=18.4

Q ss_pred             CCeEEEEecCCCcHHHHHHHHh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~  113 (192)
                      +-.++|.|.||+|||+|+..|.
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3478899999999999977765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.56  E-value=0.096  Score=40.62  Aligned_cols=56  Identities=11%  Similarity=0.027  Sum_probs=33.8

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE-eeCCeEEEEECCCC
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGY  148 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~-~~~~~~~lvDtPG~  148 (192)
                      ..-.+.+.|++++|||+|+++|...-  ................ ..+..+.++|=|-.
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~l--g~~~~~~~~~~~f~l~~l~~k~~~~~~e~~~  159 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTV--PFYGCVNWTNENFPFNDCVDKMVIWWEEGKM  159 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHS--SCEEECCTTCSSCTTGGGSSCSEEEECSCCE
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHh--cchhhccccCCCccccccCCCEEEEEeCCCc
Confidence            34588999999999999999999753  1111111111110000 13678888887754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.43  E-value=0.087  Score=38.53  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +-.+.|.|.||+|||+|...++-
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            44889999999999999988874

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.37  E-value=0.17  Score=40.03  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+.++|+||+|||.+.+.|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            6788999999999999998853

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.35  E-value=0.099  Score=39.27  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+++.|++|+||||+...+...
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999988753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=90.15  E-value=0.084  Score=42.19  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=19.0

Q ss_pred             eEEEEecCCCcHHHHHHHHhhc
Q 029512           94 EIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        94 ~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .++++|+||+|||.|.++|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4556799999999999999975

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.096  Score=39.64  Aligned_cols=22  Identities=23%  Similarity=0.178  Sum_probs=18.7

Q ss_pred             CeEEEEecCCCcHHHHHHHHhh
Q 029512           93 PEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~  114 (192)
                      -.++|+|.+|+|||+|.-.|+-
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4778999999999999987763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.59  E-value=0.11  Score=37.73  Aligned_cols=23  Identities=17%  Similarity=0.088  Sum_probs=18.5

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALT  113 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~  113 (192)
                      .+-.+.|.|+||+|||+|.-.++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            34588999999999999975543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.58  E-value=0.09  Score=38.95  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=19.5

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhh
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      +-.+.|.|+||+|||+|.-.++.
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            44889999999999999887763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.34  E-value=0.11  Score=40.03  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..|+|+|..|+|||||...+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999998865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.07  E-value=0.095  Score=42.01  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCcHHHHHHHHhhc
Q 029512           92 LPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+|.|=|.-|+||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.61  E-value=0.13  Score=41.15  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+|.|=|.-|+||||+++.|...
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEEECCccCCHHHHHHHHHHH
Confidence            47899999999999999999874

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.18  E-value=0.15  Score=37.48  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=20.4

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .+-.+.|.|+||+|||+|.-.++.
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999887764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=87.19  E-value=0.15  Score=40.84  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCcHHHHHHHHhhc
Q 029512           93 PEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        93 ~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      .+|.|=|.-|+||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            46889999999999999999754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.67  E-value=1.2  Score=34.09  Aligned_cols=24  Identities=17%  Similarity=0.123  Sum_probs=19.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      ....+.+.|++++|||+|.=.++.
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHH
Confidence            455888999999999999755553

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=85.94  E-value=0.31  Score=38.18  Aligned_cols=26  Identities=12%  Similarity=0.161  Sum_probs=22.7

Q ss_pred             CCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512           90 PDLPEIAFAGRSNVGKSSMLNALTRQ  115 (192)
Q Consensus        90 ~~~~~i~lvG~~n~GKStlin~L~~~  115 (192)
                      ..+-+++|+|.+|+|||+|+..+...
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            45679999999999999999988863

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.35  E-value=0.17  Score=38.57  Aligned_cols=16  Identities=13%  Similarity=0.243  Sum_probs=13.3

Q ss_pred             eEEEEecCCCcHHHHH
Q 029512           94 EIAFAGRSNVGKSSML  109 (192)
Q Consensus        94 ~i~lvG~~n~GKStli  109 (192)
                      .++|+|.+|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4678899999999753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.09  E-value=0.24  Score=33.89  Aligned_cols=24  Identities=17%  Similarity=0.111  Sum_probs=21.2

Q ss_pred             CCCeEEEEecCCCcHHHHHHHHhh
Q 029512           91 DLPEIAFAGRSNVGKSSMLNALTR  114 (192)
Q Consensus        91 ~~~~i~lvG~~n~GKStlin~L~~  114 (192)
                      .+..|.+-|.+|+||||+-|+|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            367999999999999999999963

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=83.95  E-value=0.25  Score=38.02  Aligned_cols=16  Identities=19%  Similarity=0.378  Sum_probs=13.1

Q ss_pred             eEEEEecCCCcHHHHH
Q 029512           94 EIAFAGRSNVGKSSML  109 (192)
Q Consensus        94 ~i~lvG~~n~GKStli  109 (192)
                      .++|.|.+|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3778899999999654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=83.71  E-value=0.34  Score=38.93  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=17.2

Q ss_pred             CCeEEEEecCCCcHHHHHHHH
Q 029512           92 LPEIAFAGRSNVGKSSMLNAL  112 (192)
Q Consensus        92 ~~~i~lvG~~n~GKStlin~L  112 (192)
                      .+..+|.|++|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            357899999999999987543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.59  E-value=0.57  Score=33.38  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=17.9

Q ss_pred             eEEEEec-CCCcHHHHHHHHhh
Q 029512           94 EIAFAGR-SNVGKSSMLNALTR  114 (192)
Q Consensus        94 ~i~lvG~-~n~GKStlin~L~~  114 (192)
                      ++.+.|- +||||||+.-.|..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            6789998 69999999888874