Citrus Sinensis ID: 029539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MGETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRNSTPTPGR
Secondary Structure (PSIPRED)
ccccccccEEEEccccccccccEEEEcEEEcEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHcccccccccEEEEEEEEEEEccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEcccHHHHHHccccccccccccccEEEccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHccccccccEEEEEEEccccEEEEccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgetdnkdpiipcgliawslfndtygfsvkgkdlkvnkrdiawgsdknykfgadvfpknfqvgdvggkslnssiplseqEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIEnnyntydfkgtKSLVLSTTswiggkndflGVTFITIGGICLFLAITFILLYVikprplgdpsylswnrnstptpgr
Flexible Loop (DISEMBL)
mgetdnkdpiipCGLIAWSLFNDTYGfsvkgkdlkvNKRDIAWGSDKNYKFGADVFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENnyntydfkgTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRplgdpsylswnrnstptpgr
Low Complexity Region (SEG)
MGETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRNSTPTPGR
Disordered region (IsUnstruct)
*********IIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYL************
Disordered Region (DISOPRED)
*****NKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSY*************
Disordered Region (DISEMBL)
MGETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWN*********
Disordered Region (DISPRO)
*****NKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPL******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRNSTPTPGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q8L8W0	350	ALA-interacting subunit 5	yes	no	0.932	0.511	0.694	2e-72
Q9SA35	336	Putative ALA-interacting	no	no	0.932	0.532	0.688	5e-72
Q9SLK2	349	ALA-interacting subunit 3	no	no	0.927	0.510	0.687	5e-70
Q9LTW0	350	ALA-interacting subunit 1	no	no	0.921	0.505	0.668	1e-67
Q67YS6	343	Putative ALA-interacting	no	no	0.942	0.527	0.540	3e-53
Q5F362	372	Cell cycle control protei	yes	no	0.854	0.440	0.411	9e-26
Q1MTQ5	396	Meiotically up-regulated	yes	no	0.927	0.449	0.386	1e-25
P53740	393	Uncharacterized protein Y	yes	no	0.927	0.452	0.373	2e-25
Q6AY41	328	Cell cycle control protei	yes	no	0.807	0.472	0.397	3e-24
Q8VEK0	364	Cell cycle control protei	yes	no	0.822	0.434	0.398	3e-24

>sp|Q8L8W0|ALIS5_ARATH ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1

 Score =  271 bits (693), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 150/180 (83%), Gaps = 1/180 (0%)

Query: 8   DPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGD-VG 66
           +PI+PCGL+AWSLFNDTY FS   + L VNK+ I+W SD+  KFG +VFPKNFQ G  +G
Sbjct: 167 EPIVPCGLVAWSLFNDTYSFSRNSQQLLVNKKGISWKSDRENKFGKNVFPKNFQKGAPIG 226

Query: 67  GKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKG 126
           G +LN S PLSEQEDLIVWMRTAAL TFRKLYGKIE DL A D ITV+++NNYNTY F G
Sbjct: 227 GGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTYSFNG 286

Query: 127 TKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRNS 186
            K LVLSTTSW+GG+NDFLG+ ++T+G ICLFLA+TF +LY++KPR LGDPSYLSWNR++
Sbjct: 287 QKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSA 346

Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA35|ALIS4_ARATH Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=2

 Score =  270 bits (689), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 150/180 (83%), Gaps = 1/180 (0%)

Query: 8   DPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGD-VG 66
            PI+PCGL+AWSLFNDTY F+   + L VNK+DI+W SD+  KFG +VFPKNFQ G  +G
Sbjct: 153 QPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRESKFGKNVFPKNFQKGSLIG 212

Query: 67  GKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKG 126
           GKSL+  IPLSEQEDLIVWMRTAAL TFRKLYGKI+ DLQA D I V+++NNYNTY F G
Sbjct: 213 GKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFNG 272

Query: 127 TKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRNS 186
            K LVLSTTSW+GG+NDFLG+ ++T+G ICLFLA++F +LY+ KPR LGDPSYLSWNR++
Sbjct: 273 KKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSA 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLK2|ALIS3_ARATH ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1

 Score =  263 bits (672), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/179 (68%), Positives = 142/179 (79%), Gaps = 1/179 (0%)

Query: 8   DPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDV-G 66
            PI+PCGLIAWSLFNDTY  S     L VNK+ IAW SDK +KFG  VFPKNFQ G++ G
Sbjct: 167 QPIVPCGLIAWSLFNDTYALSRNNVSLAVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITG 226

Query: 67  GKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKG 126
           G +L+  IPLSEQEDLIVWMRTAAL TFRKLYGKIE DL+  D I V + NNYNTY F G
Sbjct: 227 GATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYNTYSFNG 286

Query: 127 TKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRN 185
            K LVLSTTSW+GGKNDFLG+ ++T+GGIC  LA+ F ++Y++KPR LGDPSYLSWNRN
Sbjct: 287 KKKLVLSTTSWLGGKNDFLGIAYLTVGGICFILALAFTIMYLVKPRRLGDPSYLSWNRN 345

Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTW0|ALIS1_ARATH ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1

 Score =  255 bits (652), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 144/178 (80%), Gaps = 1/178 (0%)

Query: 8   DPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDV-G 66
            PI+PCGLIAWSLFNDTY  S   + L VNK+ IAW SDK +KFG +VFPKNFQ G++ G
Sbjct: 168 QPIVPCGLIAWSLFNDTYVLSRNNQGLTVNKKGIAWKSDKEHKFGKNVFPKNFQKGNLTG 227

Query: 67  GKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKG 126
           G SL+ + PLS+QEDLIVWMRTAAL TFRKLYGKIE DL+  + I V ++NNYNTY F G
Sbjct: 228 GASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGKIESDLEKGENIQVTLQNNYNTYSFSG 287

Query: 127 TKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNR 184
            K LVLSTTSW+GGKNDFLG+ ++T+GGIC  LA+ F ++Y++KPR LGDP+YLSWNR
Sbjct: 288 KKKLVLSTTSWLGGKNDFLGIAYLTVGGICFVLALAFTVMYLVKPRRLGDPTYLSWNR 345

Required for the lipid transport activity of the ALA/ALIS P4-ATPase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67YS6|ALIS2_ARATH Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1

 Score =  207 bits (527), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/185 (54%), Positives = 137/185 (74%), Gaps = 4/185 (2%)

Query: 3   ETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQV 62
           E+ N  PI+PCGLIAWS+FNDT+ FS +   L V++ +IAW SD+ +KFG +V+P NFQ 
Sbjct: 159 ESSNGLPIVPCGLIAWSMFNDTFTFSRERTKLNVSRNNIAWKSDREHKFGKNVYPINFQN 218

Query: 63  GD-VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNT 121
           G  +GG  L+  IPLS+QED IVWMR AAL +FRKLYG+IE+DL+   V+ V + NNYNT
Sbjct: 219 GTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGKVVEVNLMNNYNT 278

Query: 122 YDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLS 181
           Y F G K L+LST++W+GG+NDFLG+T++ +G   + ++I F+LL++  PRP GD    S
Sbjct: 279 YSFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISIIFMLLHLKNPRPYGDN---S 335

Query: 182 WNRNS 186
           WN+ S
Sbjct: 336 WNKKS 340

Arabidopsis thaliana (taxid: 3702)

>sp|Q5F362|CC50A_CHICK Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1

 Score =  116 bits (291), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 98/187 (52%), Gaps = 23/187 (12%)

Query: 3   ETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVN----KRDIAWGSDKNYKFGADVFPK 58
            T+   PI PCG IA S+FNDT        D +      K+ IAW +DKN KF       
Sbjct: 173 RTNEDKPIAPCGAIANSMFNDTLELYHIENDTRTAITLIKKGIAWWTDKNVKFRNPKGDG 232

Query: 59  NFQVGDVGG-KSLNSSIPL----SE-------QEDLIVWMRTAALSTFRKLYGKIEDD-- 104
           N      G  K +N   P+    SE        ED IVWMRTAAL TFRKLY  IE    
Sbjct: 233 NLTALFQGTTKPVNWPKPVYMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSN 292

Query: 105 ----LQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLA 160
               LQA    ++ I  NY  + F G K ++LST SW+GGKN FLG+ +IT+G IC FL 
Sbjct: 293 LQPTLQAGKY-SLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITVGSICFFLG 351

Query: 161 ITFILLY 167
           +  ++++
Sbjct: 352 VVLLIIH 358

Gallus gallus (taxid: 9031)

>sp|Q1MTQ5|MUG89_SCHPO Meiotically up-regulated gene 89 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug89 PE=1 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 103/189 (54%), Gaps = 11/189 (5%)

Query: 5   DNKDPIIPCGLIAWSLFNDTYGFSVKGKD----LKVNKRDIAWGSDK------NYKFGAD 54
           ++  P  PCGLIA SLFNDT+  S++  D       + ++IAW SDK      NY     
Sbjct: 195 EDDKPYYPCGLIANSLFNDTFS-SLRLLDDNSVYTFSTKNIAWASDKRRFLKTNYSPDDV 253

Query: 55  VFPKNFQVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVV 114
             P N+ +    G + ++   LS  E+L VWMRTA L TF KL  + ++D        + 
Sbjct: 254 APPPNWVLRYPDGYTESNMPDLSTMENLQVWMRTAGLPTFSKLAMRNDNDDIFPGTYEIK 313

Query: 115 IENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPL 174
           I   +    F GTKSLVL+T S +GGKN FLG+ +I +  +C+ L   F L + I+PR L
Sbjct: 314 IGLFFPVKSFDGTKSLVLTTRSVLGGKNPFLGIAYIVVSAVCVVLGTVFTLRHFIRPRKL 373

Query: 175 GDPSYLSWN 183
            D  YL+W+
Sbjct: 374 ADHRYLNWD 382

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53740|YN8S_YEAST Uncharacterized protein YNR048W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR048W PE=1 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 102/190 (53%), Gaps = 12/190 (6%)

Query: 10  IIPCGLIAWSLFNDTYGFSVKG----KDLKVNKRDIAWGSDKNYKFG------ADVFPKN 59
           I PCGLIA S+FNDT+G ++ G     D  +  + IAW +D ++++G      +D+ P  
Sbjct: 190 IFPCGLIANSMFNDTFGTTLTGVNDTADYLLTTKGIAWDTD-SHRYGKTEYNASDIVPPP 248

Query: 60  FQVGDVGGKSLNSSIP-LSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENN 118
                      + +IP L   E   +WMRTAAL  F KL  K E +     +    IE N
Sbjct: 249 NWAKLFPNGYTDDNIPDLQNWEQFKIWMRTAALPNFYKLAMKNETNGLGKGIYIADIELN 308

Query: 119 YNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPS 178
           Y    F GTKS VL+T S IG  N+ LG+ ++ + GI    AI F++  + KPRP+ D S
Sbjct: 309 YPVRSFYGTKSFVLTTNSIIGAGNEALGIVYLIVAGIATLFAILFLIKVIFKPRPMHDHS 368

Query: 179 YLSWNRNSTP 188
           YL++  + TP
Sbjct: 369 YLNFENSDTP 378

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6AY41|CC50A_RAT Cell cycle control protein 50A OS=Rattus norvegicus GN=Tmem30a PE=2 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 31/186 (16%)

Query: 9   PIIPCGLIAWSLFNDTYGFSVKGKD-------LKVNKRDIAWGSDKNYKF----GADVFP 57
           PI PCG IA S+FNDT    +   +       + + K+ IAW +DKN KF    G D   
Sbjct: 131 PIAPCGAIANSMFNDTLELFLVANESDPKPVPILLKKKGIAWWTDKNVKFRNPPGKDSLQ 190

Query: 58  KNFQVGDVGGKSLNSSIPLSE------------QEDLIVWMRTAALSTFRKLYGKIE--D 103
           + F+      K +N   P+ E             ED IVWMRTAAL TFRKLY  IE  D
Sbjct: 191 EKFKDT---TKPVNWHKPVYELDPDDESNNGFINEDFIVWMRTAALPTFRKLYRLIERTD 247

Query: 104 DLQAN---DVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLA 160
           DL          + I  NY  + F G K ++LST SW+GGKN FLG+ +ITIG I   L 
Sbjct: 248 DLHPTLPAGQYYLNITYNYPVHFFDGRKRMILSTISWMGGKNPFLGIAYITIGSISFLLG 307

Query: 161 ITFILL 166
           +  +++
Sbjct: 308 VVLLVI 313

Rattus norvegicus (taxid: 10116)

>sp|Q8VEK0|CC50A_MOUSE Cell cycle control protein 50A OS=Mus musculus GN=Tmem30a PE=1 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 97/183 (53%), Gaps = 25/183 (13%)

Query: 9   PIIPCGLIAWSLFNDTYGFSVKGKD-------LKVNKRDIAWGSDKNYKF----GADVFP 57
           PI PCG IA S+FNDT    +   +       + + K+ IAW +DKN KF    G +   
Sbjct: 167 PIAPCGAIANSMFNDTLELYLVANESDPKPIPIPLKKKGIAWWTDKNVKFRNPPGKESLE 226

Query: 58  KNFQ--VGDVG-GKSLNSSIPLSEQ------EDLIVWMRTAALSTFRKLYGKIE--DDLQ 106
           + F+  +  V   K++    P  E       ED IVWMRTAAL TFRKLY  IE  DDL 
Sbjct: 227 EKFKDTIKPVNWHKAVYELDPEDESNNGFINEDFIVWMRTAALPTFRKLYRLIERRDDLH 286

Query: 107 AN---DVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITF 163
                    + I  NY  + F G K ++LST SW+GGKN FLG+ +ITIG I   L +  
Sbjct: 287 PTLPAGQYFLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITIGSISFLLGVVL 346

Query: 164 ILL 166
           +++
Sbjct: 347 LVI 349

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
449445935	356	PREDICTED: ALA-interacting subunit 5-lik	0.932	0.502	0.783	6e-80
357454849	347	Cell division control protein [Medicago	0.953	0.527	0.722	5e-76
388519143	347	unknown [Medicago truncatula]	0.953	0.527	0.722	7e-76
224134637	353	predicted protein [Populus trichocarpa]	0.958	0.521	0.724	5e-74
242091191	342	hypothetical protein SORBIDRAFT_09g02642	0.968	0.543	0.705	9e-74
255550745	350	conserved hypothetical protein [Ricinus	0.963	0.528	0.684	6e-73
222624097	543	hypothetical protein OsJ_09202 [Oryza sa	0.984	0.348	0.696	8e-73
293333228	339	uncharacterized protein LOC100384483 [Ze	0.968	0.548	0.695	1e-72
115450369	340	Os03g0120100 [Oryza sativa Japonica Grou	0.984	0.555	0.696	1e-72
255564080	330	Cell division control protein, putative	0.958	0.557	0.691	3e-72

>gi|449445935|ref|XP_004140727.1| PREDICTED: ALA-interacting subunit 5-like [Cucumis sativus]

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 141/180 (78%), Positives = 161/180 (89%), Gaps = 1/180 (0%)

Query: 9   PIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGD-VGG 67
           PI+PCGLIAWSLFNDTYGFS+K K L+V+K+DIAW SD+  KFG+DV+PKNFQ G  +GG
Sbjct: 173 PIVPCGLIAWSLFNDTYGFSMKNKALQVSKKDIAWKSDQERKFGSDVYPKNFQSGGLIGG 232

Query: 68  KSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGT 127
             LN+SIPLS+QEDLIVWMRTAAL TFRKLYGKIE D +AND+ITVVIENNYNTY F G 
Sbjct: 233 AKLNASIPLSQQEDLIVWMRTAALPTFRKLYGKIEADFEANDIITVVIENNYNTYSFGGK 292

Query: 128 KSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRNST 187
           K LVLSTTSWIGGKNDFLG+ ++++GG+CLFLAITFILLYVIKPRPLGDPSYLSWNRN+ 
Sbjct: 293 KKLVLSTTSWIGGKNDFLGIAYLSVGGLCLFLAITFILLYVIKPRPLGDPSYLSWNRNAA 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454849|ref|XP_003597705.1| Cell division control protein [Medicago truncatula] gi|355486753|gb|AES67956.1| Cell division control protein [Medicago truncatula]

 Score =  288 bits (738), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 158/184 (85%), Gaps = 1/184 (0%)

Query: 3   ETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQV 62
           +T+ K+PI+PCGLIAWS+FNDTY FS+  KDL +NK++IAWGSDKN KFG +V+PKNFQ 
Sbjct: 159 KTEGKEPIVPCGLIAWSMFNDTYKFSIDNKDLTINKKNIAWGSDKNSKFGHEVYPKNFQS 218

Query: 63  GD-VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNT 121
           G  +GG  LN S+PLSEQEDLIVWMRTAAL TFRKLYGKIE DL+ ND I ++I+NNYNT
Sbjct: 219 GGLIGGAKLNESVPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNT 278

Query: 122 YDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLS 181
           Y+F+G K LVLSTT+WIGGKN FLGV ++ +GG+ LF AI FILLYV+KPRPLGDPSYLS
Sbjct: 279 YEFQGRKKLVLSTTTWIGGKNRFLGVAYLCVGGLSLFCAIGFILLYVVKPRPLGDPSYLS 338

Query: 182 WNRN 185
           WNRN
Sbjct: 339 WNRN 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519143|gb|AFK47633.1| unknown [Medicago truncatula]

 Score =  288 bits (737), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 158/184 (85%), Gaps = 1/184 (0%)

Query: 3   ETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQV 62
           +T+ K+PI+PCGLIAWS+FNDTY FS+  KDL +NK++IAWGSDKN KFG +V+PKNFQ 
Sbjct: 159 KTEGKEPIVPCGLIAWSMFNDTYKFSIDNKDLTINKKNIAWGSDKNSKFGHEVYPKNFQS 218

Query: 63  GD-VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNT 121
           G  +GG  LN S+PLSEQEDLIVWMRTAAL TFRKLYGKIE DL+ ND I ++I+NNYNT
Sbjct: 219 GGLIGGAKLNESVPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNT 278

Query: 122 YDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLS 181
           Y+F+G K LVLSTT+WIGGKN FLGV ++ +GG+ LF AI FILLYV+KPRPLGDPSYLS
Sbjct: 279 YEFQGRKKLVLSTTTWIGGKNRFLGVAYLCVGGLSLFCAIGFILLYVVKPRPLGDPSYLS 338

Query: 182 WNRN 185
           WNRN
Sbjct: 339 WNRN 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134637|ref|XP_002327453.1| predicted protein [Populus trichocarpa] gi|222836007|gb|EEE74428.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (721), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 152/185 (82%), Gaps = 1/185 (0%)

Query: 4   TDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVG 63
           T N  PI+PCGL+AWSLFNDTY FSVK + L V+K++IAW SD+ +KFG+DV+PKNFQ G
Sbjct: 165 TSNGQPIVPCGLVAWSLFNDTYRFSVKKEVLDVSKKNIAWKSDQEHKFGSDVYPKNFQSG 224

Query: 64  D-VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTY 122
             +GG  L+SSIPLSEQ DLIVWMRTAAL  FRKLYGKIE DLQAN  ITV IENNYNTY
Sbjct: 225 SLIGGGKLDSSIPLSEQVDLIVWMRTAALPNFRKLYGKIEKDLQANTTITVTIENNYNTY 284

Query: 123 DFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSW 182
            F G K LVLSTTSWIGGKN FLG  +I IGG+CLFLA+ F+ +YV KPRPLGDPSYLSW
Sbjct: 285 SFGGKKKLVLSTTSWIGGKNSFLGRAYIAIGGLCLFLAVCFVFVYVFKPRPLGDPSYLSW 344

Query: 183 NRNST 187
           NRN +
Sbjct: 345 NRNPS 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242091191|ref|XP_002441428.1| hypothetical protein SORBIDRAFT_09g026420 [Sorghum bicolor] gi|241946713|gb|EES19858.1| hypothetical protein SORBIDRAFT_09g026420 [Sorghum bicolor]

 Score =  281 bits (719), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 156/187 (83%), Gaps = 1/187 (0%)

Query: 5   DNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGD 64
           D   PI+PCGLIAWSLFNDTY FS+  K ++VNK++IAW SDKN KFG+DVFP NFQ G 
Sbjct: 155 DGGKPIVPCGLIAWSLFNDTYSFSLNKKAVEVNKKNIAWDSDKNKKFGSDVFPSNFQKGG 214

Query: 65  -VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYD 123
            +GG  LN  IPLSEQEDLIVWMRTAAL TFRKLYG+IE D+ A+D ITVVI+NNYNTY 
Sbjct: 215 LIGGAKLNEKIPLSEQEDLIVWMRTAALPTFRKLYGRIESDMMASDEITVVIQNNYNTYS 274

Query: 124 FKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWN 183
           F GTK+LVLSTTSWIGG+N+F+GV ++ IGGICLFLA+ F++LYVIKPR LGDP+YLSWN
Sbjct: 275 FGGTKALVLSTTSWIGGRNNFIGVAYVAIGGICLFLAMGFVILYVIKPRALGDPNYLSWN 334

Query: 184 RNSTPTP 190
           + +   P
Sbjct: 335 KENPDHP 341

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550745|ref|XP_002516421.1| conserved hypothetical protein [Ricinus communis] gi|223544456|gb|EEF45976.1| conserved hypothetical protein [Ricinus communis]

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/190 (68%), Positives = 159/190 (83%), Gaps = 5/190 (2%)

Query: 3   ETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQV 62
           +T N   I+PCGLIAWSLFNDTY FS+   +L+VNK+DI+W SD+++KFG DVFPKNFQ+
Sbjct: 163 DTVNGIAIVPCGLIAWSLFNDTYSFSLNSMELQVNKKDISWKSDRDHKFGKDVFPKNFQM 222

Query: 63  GDV-GGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNT 121
           GD+ GG +LN+S PLSEQEDLIVWMRTAAL TFRKLYGKIE DLQ ND + + ++NNYNT
Sbjct: 223 GDLRGGATLNTSKPLSEQEDLIVWMRTAALPTFRKLYGKIEQDLQPNDELHITLQNNYNT 282

Query: 122 YDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLS 181
           Y F G K LVLSTT+W+GGKNDFLG+ ++T+GGIC FLA++F ++Y+IKPR LGDPSYLS
Sbjct: 283 YSFDGKKKLVLSTTTWLGGKNDFLGIAYLTVGGICFFLAMSFTVVYLIKPRRLGDPSYLS 342

Query: 182 WNRNSTPTPG 191
           WNR    TPG
Sbjct: 343 WNR----TPG 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222624097|gb|EEE58229.1| hypothetical protein OsJ_09202 [Oryza sativa Japonica Group]

 Score =  278 bits (711), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 133/191 (69%), Positives = 159/191 (83%), Gaps = 2/191 (1%)

Query: 2   GETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQ 61
           G T +  PIIPCGLIAWSLFNDTY  SV  K ++VNK+DIAW SDK  KFG+D++P NFQ
Sbjct: 352 GNTVDGAPIIPCGLIAWSLFNDTYTISVNKKAIEVNKKDIAWKSDKTDKFGSDIYPSNFQ 411

Query: 62  VGD-VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYN 120
            G  +GG  LN SIPLSEQEDLIVWMRTAAL TFRKLYG+IE D+ AND +TVVI+NNYN
Sbjct: 412 KGSLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGRIETDIMANDQLTVVIQNNYN 471

Query: 121 TYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITF-ILLYVIKPRPLGDPSY 179
           TY F G+K+LVLSTTSWIGGKN+F+GV ++TIGG+C+FLA+ F +LLY++KPR LGDPSY
Sbjct: 472 TYSFGGSKALVLSTTSWIGGKNNFIGVAYLTIGGLCIFLAVGFVVLLYMVKPRTLGDPSY 531

Query: 180 LSWNRNSTPTP 190
           LSWNR++   P
Sbjct: 532 LSWNRDTPDRP 542

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293333228|ref|NP_001170484.1| uncharacterized protein LOC100384483 [Zea mays] gi|238005586|gb|ACR33828.1| unknown [Zea mays] gi|413946118|gb|AFW78767.1| hypothetical protein ZEAMMB73_713516 [Zea mays]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 154/187 (82%), Gaps = 1/187 (0%)

Query: 5   DNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGD 64
           D   PI+PCGLIAWSLFNDTY FS+  K ++VNK++IAW SDK  KFG+DV+P NFQ G 
Sbjct: 152 DGGKPIVPCGLIAWSLFNDTYSFSLNSKAVQVNKKNIAWDSDKIKKFGSDVYPSNFQKGG 211

Query: 65  -VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYD 123
            +GG  L+  IPLSEQEDLIVWMRTAAL TFRKLYG+IE D  A+D ITVVI+NNYNTY 
Sbjct: 212 LIGGAKLDEKIPLSEQEDLIVWMRTAALPTFRKLYGRIEADAMASDEITVVIQNNYNTYS 271

Query: 124 FKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWN 183
           F GTK+LVLSTTSWIGG+N+F+GV ++ IGG+CLFLA+ F++LYVIKPR LGDPSYLSWN
Sbjct: 272 FGGTKALVLSTTSWIGGRNNFIGVAYVAIGGVCLFLALAFVILYVIKPRALGDPSYLSWN 331

Query: 184 RNSTPTP 190
           R +   P
Sbjct: 332 RENPDHP 338

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115450369|ref|NP_001048785.1| Os03g0120100 [Oryza sativa Japonica Group] gi|108705893|gb|ABF93688.1| LEM3 family/CDC50 family protein, expressed [Oryza sativa Japonica Group] gi|113547256|dbj|BAF10699.1| Os03g0120100 [Oryza sativa Japonica Group]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/191 (69%), Positives = 159/191 (83%), Gaps = 2/191 (1%)

Query: 2   GETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQ 61
           G T +  PIIPCGLIAWSLFNDTY  SV  K ++VNK+DIAW SDK  KFG+D++P NFQ
Sbjct: 149 GNTVDGAPIIPCGLIAWSLFNDTYTISVNKKAIEVNKKDIAWKSDKTDKFGSDIYPSNFQ 208

Query: 62  VGD-VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYN 120
            G  +GG  LN SIPLSEQEDLIVWMRTAAL TFRKLYG+IE D+ AND +TVVI+NNYN
Sbjct: 209 KGSLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGRIETDIMANDQLTVVIQNNYN 268

Query: 121 TYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITF-ILLYVIKPRPLGDPSY 179
           TY F G+K+LVLSTTSWIGGKN+F+GV ++TIGG+C+FLA+ F +LLY++KPR LGDPSY
Sbjct: 269 TYSFGGSKALVLSTTSWIGGKNNFIGVAYLTIGGLCIFLAVGFVVLLYMVKPRTLGDPSY 328

Query: 180 LSWNRNSTPTP 190
           LSWNR++   P
Sbjct: 329 LSWNRDTPDRP 339

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564080|ref|XP_002523038.1| Cell division control protein, putative [Ricinus communis] gi|223537721|gb|EEF39342.1| Cell division control protein, putative [Ricinus communis]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 128/185 (69%), Positives = 159/185 (85%), Gaps = 1/185 (0%)

Query: 3   ETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQV 62
           E ++   I+PCGL+AWSLFNDTY F++K K L+VNK+DIAW SDK++KFG+DV+PKNFQ 
Sbjct: 141 EMEDGKAIVPCGLVAWSLFNDTYKFTLKNKGLEVNKKDIAWKSDKDHKFGSDVYPKNFQT 200

Query: 63  -GDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNT 121
            G +GG +LNSSIPLSEQEDL+VWMRTAAL TFRKLYG+IE DLQANDVI V I+NNYN+
Sbjct: 201 SGLIGGGTLNSSIPLSEQEDLMVWMRTAALPTFRKLYGRIETDLQANDVIEVQIQNNYNS 260

Query: 122 YDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLS 181
           Y + G K LVLSTT+WIGG+NDFLGV ++ IGG+ L LA++FI +YV KPRPLGDP+YLS
Sbjct: 261 YGYGGKKMLVLSTTTWIGGRNDFLGVAYLFIGGLNLLLAMSFIFIYVFKPRPLGDPTYLS 320

Query: 182 WNRNS 186
           WN+++
Sbjct: 321 WNKHT 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2032780	336	AT1G16360 [Arabidopsis thalian	0.958	0.547	0.675	1e-68
TAIR|locus:2206400	350	ALIS5 "ALA-interacting subunit	0.932	0.511	0.694	1e-68
TAIR|locus:2020018	349	AT1G54320 [Arabidopsis thalian	0.921	0.507	0.691	1.3e-66
TAIR|locus:2087695	350	ALIS1 "ALA-interacting subunit	0.916	0.502	0.672	1.1e-64
TAIR|locus:2161453	343	AT5G46150 "AT5G46150" [Arabido	0.942	0.527	0.540	3e-53
DICTYBASE|DDB_G0276567	312	DDB_G0276567 "CDC50/LEM3 famil	0.901	0.554	0.432	2e-31
SGD|S000005331	393	YNR048W "Protein that interact	0.942	0.460	0.382	7.3e-27
POMBASE|SPBC1773.11c	396	mug89 "CDC50 domain protein, i	0.921	0.446	0.407	4e-26
RGD|1303315	328	Tmem30a "transmembrane protein	0.453	0.265	0.5	4.5e-26
UNIPROTKB|Q6AY41	328	Tmem30a "Cell cycle control pr	0.453	0.265	0.5	4.5e-26

TAIR|locus:2032780 AT1G16360 [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 125/185 (67%), Positives = 152/185 (82%)

Query:     3 ETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQV 62
             +T    PI+PCGL+AWSLFNDTY F+   + L VNK+DI+W SD+  KFG +VFPKNFQ 
Sbjct:   148 DTLGGQPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRESKFGKNVFPKNFQK 207

Query:    63 GD-VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNT 121
             G  +GGKSL+  IPLSEQEDLIVWMRTAAL TFRKLYGKI+ DLQA D I V+++NNYNT
Sbjct:   208 GSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNT 267

Query:   122 YDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLS 181
             Y F G K LVLSTTSW+GG+NDFLG+ ++T+G ICLFLA++F +LY+ KPR LGDPSYLS
Sbjct:   268 YSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLS 327

Query:   182 WNRNS 186
             WNR++
Sbjct:   328 WNRSA 332

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2206400 ALIS5 "ALA-interacting subunit 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 125/180 (69%), Positives = 150/180 (83%)

Query:     8 DPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVG-DVG 66
             +PI+PCGL+AWSLFNDTY FS   + L VNK+ I+W SD+  KFG +VFPKNFQ G  +G
Sbjct:   167 EPIVPCGLVAWSLFNDTYSFSRNSQQLLVNKKGISWKSDRENKFGKNVFPKNFQKGAPIG 226

Query:    67 GKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKG 126
             G +LN S PLSEQEDLIVWMRTAAL TFRKLYGKIE DL A D ITV+++NNYNTY F G
Sbjct:   227 GGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTYSFNG 286

Query:   127 TKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRNS 186
              K LVLSTTSW+GG+NDFLG+ ++T+G ICLFLA+TF +LY++KPR LGDPSYLSWNR++
Sbjct:   287 QKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSA 346

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2020018 AT1G54320 [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 123/178 (69%), Positives = 142/178 (79%)

Query:     9 PIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDV-GG 67
             PI+PCGLIAWSLFNDTY  S     L VNK+ IAW SDK +KFG  VFPKNFQ G++ GG
Sbjct:   168 PIVPCGLIAWSLFNDTYALSRNNVSLAVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITGG 227

Query:    68 KSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGT 127
              +L+  IPLSEQEDLIVWMRTAAL TFRKLYGKIE DL+  D I V + NNYNTY F G 
Sbjct:   228 ATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYNTYSFNGK 287

Query:   128 KSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRN 185
             K LVLSTTSW+GGKNDFLG+ ++T+GGIC  LA+ F ++Y++KPR LGDPSYLSWNRN
Sbjct:   288 KKLVLSTTSWLGGKNDFLGIAYLTVGGICFILALAFTIMYLVKPRRLGDPSYLSWNRN 345

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2087695 ALIS1 "ALA-interacting subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 119/177 (67%), Positives = 144/177 (81%)

Query:     9 PIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGDV-GG 67
             PI+PCGLIAWSLFNDTY  S   + L VNK+ IAW SDK +KFG +VFPKNFQ G++ GG
Sbjct:   169 PIVPCGLIAWSLFNDTYVLSRNNQGLTVNKKGIAWKSDKEHKFGKNVFPKNFQKGNLTGG 228

Query:    68 KSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGT 127
              SL+ + PLS+QEDLIVWMRTAAL TFRKLYGKIE DL+  + I V ++NNYNTY F G 
Sbjct:   229 ASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGKIESDLEKGENIQVTLQNNYNTYSFSGK 288

Query:   128 KSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNR 184
             K LVLSTTSW+GGKNDFLG+ ++T+GGIC  LA+ F ++Y++KPR LGDP+YLSWNR
Sbjct:   289 KKLVLSTTSWLGGKNDFLGIAYLTVGGICFVLALAFTVMYLVKPRRLGDPTYLSWNR 345

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0015914 "phospholipid transport" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2161453 AT5G46150 "AT5G46150" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 100/185 (54%), Positives = 137/185 (74%)

Query:     3 ETDNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQV 62
             E+ N  PI+PCGLIAWS+FNDT+ FS +   L V++ +IAW SD+ +KFG +V+P NFQ 
Sbjct:   159 ESSNGLPIVPCGLIAWSMFNDTFTFSRERTKLNVSRNNIAWKSDREHKFGKNVYPINFQN 218

Query:    63 GD-VGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNT 121
             G  +GG  L+  IPLS+QED IVWMR AAL +FRKLYG+IE+DL+   V+ V + NNYNT
Sbjct:   219 GTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGKVVEVNLMNNYNT 278

Query:   122 YDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSYLS 181
             Y F G K L+LST++W+GG+NDFLG+T++ +G   + ++I F+LL++  PRP GD S   
Sbjct:   279 YSFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISIIFMLLHLKNPRPYGDNS--- 335

Query:   182 WNRNS 186
             WN+ S
Sbjct:   336 WNKKS 340

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

DICTYBASE|DDB_G0276567 DDB_G0276567 "CDC50/LEM3 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 80/185 (43%), Positives = 103/185 (55%)

Query:     2 GETDNKDPIIPCGLIAWSLFNDTYGFS-VKGKDLKVNKRDIAWGSDKNYKFGADVFPKNF 60
             G  D    ++PCGLIA S+FND+   +   G  + + K+ IAW SD + KF      KN+
Sbjct:   138 GSEDVNKILVPCGLIANSVFNDSISLADASGNLINLTKKGIAWQSDIDKKF------KNY 191

Query:    61 QVGDVGGKSLNSSIPLSEQEDLIVWMRTAALSTFRKLYGKIE-DDLQANDVITVVIENNY 119
                 VG   +N S    E ED IVWMRTAAL  F+KLY      +   +  I + I+N Y
Sbjct:   192 PENGVG--VINFSN--FEDEDFIVWMRTAALPDFKKLYRIYHGQNGPLSGTIQIRIDNKY 247

Query:   120 NTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDPSY 179
                 F G K +VLSTTSWIGGKN FLG  +I +G IC    + F + + I PR LG P Y
Sbjct:   248 PVASFDGKKYVVLSTTSWIGGKNPFLGYAYIIVGIICFVQGVVFAIKHKISPRVLGSPKY 307

Query:   180 LSWNR 184
             L WN+
Sbjct:   308 LEWNK 312

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000005331 YNR048W "Protein that interacts with phospholipid translocase (flippase) Dnf3p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 75/196 (38%), Positives = 109/196 (55%)

Query:     5 DNKDPIIPCGLIAWSLFNDTYGFSVKG----KDLKVNKRDIAWGSDKNYKFG------AD 54
             +NK  I PCGLIA S+FNDT+G ++ G     D  +  + IAW +D ++++G      +D
Sbjct:   186 ENKT-IFPCGLIANSMFNDTFGTTLTGVNDTADYLLTTKGIAWDTD-SHRYGKTEYNASD 243

Query:    55 VFPK-NFQVGDVGGKSLNSSIP-LSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVIT 112
             + P  N+      G + + +IP L   E   +WMRTAAL  F KL  K E +     +  
Sbjct:   244 IVPPPNWAKLFPNGYT-DDNIPDLQNWEQFKIWMRTAALPNFYKLAMKNETNGLGKGIYI 302

Query:   113 VVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPR 172
               IE NY    F GTKS VL+T S IG  N+ LG+ ++ + GI    AI F++  + KPR
Sbjct:   303 ADIELNYPVRSFYGTKSFVLTTNSIIGAGNEALGIVYLIVAGIATLFAILFLIKVIFKPR 362

Query:   173 PLGDPSYLSWNRNSTP 188
             P+ D SYL++  + TP
Sbjct:   363 PMHDHSYLNFENSDTP 378

GO:0004012 "phospholipid-translocating ATPase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0042493 "response to drug" evidence=IGI;IMP

GO:0016020 "membrane" evidence=IEA

POMBASE|SPBC1773.11c mug89 "CDC50 domain protein, implicated in signal transduction (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 77/189 (40%), Positives = 104/189 (55%)

Query:     5 DNKDPIIPCGLIAWSLFNDTYGFSVKGKDLKV---NKRDIAWGSDK------NYKFGADV 55
             D+K P  PCGLIA SLFNDT+       D  V   + ++IAW SDK      NY      
Sbjct:   196 DDK-PYYPCGLIANSLFNDTFSSLRLLDDNSVYTFSTKNIAWASDKRRFLKTNYSPDDVA 254

Query:    56 FPKNFQVGDVGGKSLNSSIP-LSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVV 114
              P N+ +    G +  S++P LS  E+L VWMRTA L TF KL  + ++D        + 
Sbjct:   255 PPPNWVLRYPDGYT-ESNMPDLSTMENLQVWMRTAGLPTFSKLAMRNDNDDIFPGTYEIK 313

Query:   115 IENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPRPL 174
             I   +    F GTKSLVL+T S +GGKN FLG+ +I +  +C+ L   F L + I+PR L
Sbjct:   314 IGLFFPVKSFDGTKSLVLTTRSVLGGKNPFLGIAYIVVSAVCVVLGTVFTLRHFIRPRKL 373

Query:   175 GDPSYLSWN 183
              D  YL+W+
Sbjct:   374 ADHRYLNWD 382

GO:0003674 "molecular_function" evidence=ND

GO:0005770 "late endosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007166 "cell surface receptor signaling pathway" evidence=ISO

GO:0016021 "integral to membrane" evidence=ISO

RGD|1303315 Tmem30a "transmembrane protein 30A" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
 Identities = 46/92 (50%), Positives = 57/92 (61%)

Query:    80 EDLIVWMRTAALSTFRKLYGKIE--DDLQAN---DVITVVIENNYNTYDFKGTKSLVLST 134
             ED IVWMRTAAL TFRKLY  IE  DDL          + I  NY  + F G K ++LST
Sbjct:   222 EDFIVWMRTAALPTFRKLYRLIERTDDLHPTLPAGQYYLNITYNYPVHFFDGRKRMILST 281

Query:   135 TSWIGGKNDFLGVTFITIGGICLFLAITFILL 166
              SW+GGKN FLG+ +ITIG I   L +  +++
Sbjct:   282 ISWMGGKNPFLGIAYITIGSISFLLGVVLLVI 313

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0031175 "neuron projection development" evidence=IGI

GO:0036010 "protein localization to endosome" evidence=IEA;ISO

GO:0070863 "positive regulation of protein exit from endoplasmic reticulum" evidence=IEA;ISO

UNIPROTKB|Q6AY41 Tmem30a "Cell cycle control protein 50A" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
 Identities = 46/92 (50%), Positives = 57/92 (61%)

Query:    80 EDLIVWMRTAALSTFRKLYGKIE--DDLQAN---DVITVVIENNYNTYDFKGTKSLVLST 134
             ED IVWMRTAAL TFRKLY  IE  DDL          + I  NY  + F G K ++LST
Sbjct:   222 EDFIVWMRTAALPTFRKLYRLIERTDDLHPTLPAGQYYLNITYNYPVHFFDGRKRMILST 281

Query:   135 TSWIGGKNDFLGVTFITIGGICLFLAITFILL 166
              SW+GGKN FLG+ +ITIG I   L +  +++
Sbjct:   282 ISWMGGKNPFLGIAYITIGSISFLLGVVLLVI 313

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023466001 SubName- Full=Chromosome undetermined scaffold_30, whole genome shotgun sequence; (342 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam03381	275	pfam03381, CDC50, LEM3 (ligand-effect modulator 3)	2e-71
COG5035	372	COG5035, CDC50, Cell cycle control protein [Cell d	1e-41

>gnl|CDD|217523 pfam03381, CDC50, LEM3 (ligand-effect modulator 3) family / CDC50 family

 Score =  217 bits (554), Expect = 2e-71
 Identities = 87/187 (46%), Positives = 111/187 (59%), Gaps = 17/187 (9%)

Query: 4   TDNKDPIIPCGLIAWSLFNDTYGF---SVKGKDLKVNKRDIAWGSDKNYKFG-------A 53
             N  PI PCGLIA S+FNDT+     +    ++ ++K+ IAW SDK  KF         
Sbjct: 94  DYNGKPIAPCGLIANSMFNDTFSLPLANNGTTNVTLDKKGIAWSSDKEKKFKNTKYNPSG 153

Query: 54  DVFPKNFQVGDVGGKSLNSSIP-LSEQEDLIVWMRTAALSTFRKLYGKIED-DLQANDVI 111
            V P N++         + +IP     ED IVWMRTAAL TFRKLY +I+  DL A    
Sbjct: 154 TVPPPNWK----PNYEDDHTIPDNQTNEDFIVWMRTAALPTFRKLYRRIDATDLPAGT-Y 208

Query: 112 TVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKP 171
           T+ IENNY    F G KS+VLSTTSW GGKN FLG+ ++ +GGIC  L I F++ ++ KP
Sbjct: 209 TIQIENNYPVSSFNGKKSIVLSTTSWFGGKNPFLGIAYLVVGGICFLLGILFLIRHLFKP 268

Query: 172 RPLGDPS 178
           R LGD S
Sbjct: 269 RKLGDHS 275

Members of this family have been predicted to contain transmembrane helices. The family member LEM3 is a ligand-effect modulator, mutation of which increases glucocorticoid receptor activity in response to dexamethasone and also confers increased activity on other intracellular receptors including the progesterone, oestrogen and mineralocorticoid receptors. LEM3 is thought to affect a downstream step in the glucocorticoid receptor pathway. Factors that modulate ligand responsiveness are likely to contribute to the context-specific actions of the glucocorticoid receptor in mammalian cells. The products of genes YNR048w, YNL323w and YCR094w (CDC50) show redundancy of function and are involved in regulation of transcription via CDC39. CDC39 (also known as NOT1) is normally a negative regulator of transcription either by affecting the general RNA polymerase II machinery or by altering chromatin structure. One function of CDC39 is to block activation of the mating response pathway in the absence of pheromone, and mutation causes arrest in G1 by activation of the pathway. It may be that the cold-sensitive arrest in G1 noticed in CDC50 mutants may be due to inactivation of CDC39. The effects of LEM3 on glucocorticoid receptor activity may also be due to effects on transcription via CDC39. Length = 275

>gnl|CDD|227368 COG5035, CDC50, Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]

 Score =  143 bits (362), Expect = 1e-41
 Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 20/197 (10%)

Query: 3   ETDNKDPIIPCGLIAWSLFNDTYGFSVKG----KDLKVNKRDIAWGSDKNY----KFGAD 54
             +    I PCGLIA S+FNDT+   + G     +  +  + IAW SD++     K+ A 
Sbjct: 180 SYNEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKGIAWESDRHRYKKTKYNAS 239

Query: 55  ------VFPKNFQVGDVGGKSLNSSIP-LSEQEDLIVWMRTAALSTFRKLYGKIEDDLQA 107
                  + K +  G       + +IP LS  E+   WMRTAA   F KL  +  +D+  
Sbjct: 240 DIVPPPNWAKMYPDG-----YTDDNIPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLP 294

Query: 108 NDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLY 167
                + I  N+   +F GTKS+VL+T S IGGKN FLG+ ++ +GGIC  L + F++ +
Sbjct: 295 PGTYQLNITLNFPVLEFNGTKSIVLTTNSVIGGKNYFLGIVYLIVGGICALLGLIFLIKW 354

Query: 168 VIKPRPLGDPSYLSWNR 184
           + KPR + D SYL+WN 
Sbjct: 355 LFKPRKMADHSYLNWNM 371

Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
KOG2952	351	consensus Cell cycle control protein [Cell cycle c	100.0
COG5035	372	CDC50 Cell cycle control protein [Cell division an	100.0
PF03381	278	CDC50: LEM3 (ligand-effect modulator 3) family / C	100.0
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	89.96

>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-67  Score=460.91  Aligned_cols=177  Identities=54%  Similarity=0.973  Sum_probs=164.0

Q ss_pred             CCCeEeechhhhccccceeeeceecCe---eeeeeccccccCCccccccCCCC-------CCCCCccCCCCCccCCCCCC
Q 029539            6 NKDPIIPCGLIAWSLFNDTYGFSVKGK---DLKVNKRDIAWGSDKNYKFGADV-------FPKNFQVGDVGGKSLNSSIP   75 (192)
Q Consensus         6 ~g~~~~PCGliA~S~FNDtf~l~~~~~---~i~~~~~gIaw~sD~~~kf~~~~-------~p~~w~~~~~~~~~~~~~~~   75 (192)
                      +||+|+||||||||||||||++...+.   .++++++||||++|+ +||+++.       +|++|.++...+...|++.|
T Consensus       163 ~~kpi~PCGlIAnSlFNDTf~~~~~~~~~~~~~l~~kgIaW~sDk-~kf~~p~~n~~~~~pPpnW~k~~~~gg~~d~n~p  241 (351)
T KOG2952|consen  163 GGKPIYPCGLIANSLFNDTFELSLTNDGDSDYPLTTKGIAWESDK-HKFRKPIYNASGIVPPPNWQKGYPEGGYTDDNIP  241 (351)
T ss_pred             CCceeeecchhcchhcccccchhcccCCCccceeccCCccchhhh-hhhcCCCCccccccCCccccccCCcCCcCCCCCC
Confidence            349999999999999999999976533   789999999999999 7999975       49999998833325677888


Q ss_pred             CCchhhHHHHHhhccCchhhHhhhhhccC-CCCCceEEEEEEeeeeccccCceEEEEEeeccccCcCCchhhHHHHHHHH
Q 029539           76 LSEQEDLIVWMRTAALSTFRKLYGKIEDD-LQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGG  154 (192)
Q Consensus        76 ~~~ne~FivWMr~aalp~FrKLYg~i~~~-l~~g~~y~v~I~nnypv~~f~G~K~ivlst~s~~GgkN~fLgi~ylvvG~  154 (192)
                      +.+||+||||||+||||+||||||+|+++ |++| +|+++|++||||.+|+|+|++||+|.||+||||+||||+|||||+
T Consensus       242 l~~nedfivWMRtAAlPtFrKLy~~i~~~gL~~G-~y~l~i~~Nypv~sf~G~K~~vlst~SwlGgkN~FLgI~YLvVG~  320 (351)
T KOG2952|consen  242 LSENEDFIVWMRTAALPTFRKLYRIIESNGLPKG-TYQLNITNNYPVRSFNGKKKFVLSTTSWLGGKNPFLGIAYLVVGS  320 (351)
T ss_pred             chhhHHHHHHHHhcccchHHHHHhhhccCCCCCc-eEEEEEecccceeecCCceEEEEeeccccccCCccceehHHHHHH
Confidence            89999999999999999999999999988 8888 799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCcccccCC
Q 029539          155 ICLFLAITFILLYVIKPRPLGDPSYLSWNR  184 (192)
Q Consensus       155 i~~i~~~~f~~~~~~~~r~~gd~~~l~w~~  184 (192)
                      +|+++|++|++.|+++||++||+++|+|++
T Consensus       321 ic~~l~~~f~~~~l~~~r~~~d~~~l~~~~  350 (351)
T KOG2952|consen  321 ICILLGLIFLVIYLFKPRRLGDPSYLSWNR  350 (351)
T ss_pred             HHHHHHHHHHHHHhhcccccCCcccccccc
Confidence            999999999999999999999999999986

>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-61  Score=415.95  Aligned_cols=181  Identities=38%  Similarity=0.691  Sum_probs=164.2

Q ss_pred             CCCCCCeEeechhhhccccceeeecee----cCeeeeeeccccccCCccccccCCC-------CCCCCCccCCCCCccCC
Q 029539            3 ETDNKDPIIPCGLIAWSLFNDTYGFSV----KGKDLKVNKRDIAWGSDKNYKFGAD-------VFPKNFQVGDVGGKSLN   71 (192)
Q Consensus         3 ~~~~g~~~~PCGliA~S~FNDtf~l~~----~~~~i~~~~~gIaw~sD~~~kf~~~-------~~p~~w~~~~~~~~~~~   71 (192)
                      +++++|+||||||||||||||||+...    +.+.+.++.+||||++|++ +|+.+       ++|++|.+.+++||.-+
T Consensus       180 ~~nedK~~YPcGLIaNSmfNDtf~~~l~~i~Dts~Y~lttkgIaW~sDr~-rykktkYn~sdIvpPPnW~k~ypdGYtd~  258 (372)
T COG5035         180 SYNEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKGIAWESDRH-RYKKTKYNASDIVPPPNWAKMYPDGYTDD  258 (372)
T ss_pred             cccCCCeeecccccccccccccchhhccccccccccccccCCccchhhcc-cccCCCCChhhcCCCCchHhhCCCCCCcc
Confidence            456779999999999999999998643    3456899999999999998 99976       57999999999999744


Q ss_pred             CCCCCCchhhHHHHHhhccCchhhHhhhhhccC-CCCCceEEEEEEeeeeccccCceEEEEEeeccccCcCCchhhHHHH
Q 029539           72 SSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDD-LQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFI  150 (192)
Q Consensus        72 ~~~~~~~ne~FivWMr~aalp~FrKLYg~i~~~-l~~g~~y~v~I~nnypv~~f~G~K~ivlst~s~~GgkN~fLgi~yl  150 (192)
                      +-+..+++|.|+||||+||||+|+||++|...| |++| +|+++|+.||||.+|+|+|+|||+|.|.+||||+||||+||
T Consensus       259 NiPDls~wE~Fq~WMrtAafP~F~KLa~~N~~d~l~~G-~Y~lnI~l~fPv~~f~GtKsi~Ltt~SviGgkN~fLGI~yl  337 (372)
T COG5035         259 NIPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLPPG-TYQLNITLNFPVLEFNGTKSIVLTTNSVIGGKNYFLGIVYL  337 (372)
T ss_pred             CCCcchhHHHHHHHhhcccCchHHHHhcccccccCCCc-eEEEEEEeecceeecCCceEEEEEecccccCCCcchhhHHH
Confidence            434478999999999999999999999998765 6666 79999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCC
Q 029539          151 TIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRN  185 (192)
Q Consensus       151 vvG~i~~i~~~~f~~~~~~~~r~~gd~~~l~w~~~  185 (192)
                      |||++|.++|++|++.++++||+++||+||+|+.+
T Consensus       338 ivg~ical~~~if~~~~~f~pR~~~Dh~yLnw~~~  372 (372)
T COG5035         338 IVGGICALLGLIFLIKWLFKPRKMADHSYLNWNME  372 (372)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcccCCcccccccCC
Confidence            99999999999999999999999999999999863

>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function

Probab=100.00  E-value=8.3e-61  Score=416.14  Aligned_cols=169  Identities=51%  Similarity=0.896  Sum_probs=151.8

Q ss_pred             CCCCeEeechhhhccccceeeecee----cCeeeeeeccccccCCccccccCCCC-------CCCCCccCCCCCccCCCC
Q 029539            5 DNKDPIIPCGLIAWSLFNDTYGFSV----KGKDLKVNKRDIAWGSDKNYKFGADV-------FPKNFQVGDVGGKSLNSS   73 (192)
Q Consensus         5 ~~g~~~~PCGliA~S~FNDtf~l~~----~~~~i~~~~~gIaw~sD~~~kf~~~~-------~p~~w~~~~~~~~~~~~~   73 (192)
                      .++++++||||||||||||||++..    .++.++|+++||||++|++.+|+++.       +|++|.+    +++.+..
T Consensus        97 ~~~~~~~PCGliA~S~FNDtF~l~~~~~~~~~~~~~~~~gIaw~~d~~~~fk~~~~~~~~~~~~~~W~~----~~~~~~~  172 (278)
T PF03381_consen   97 NNGKIIYPCGLIANSMFNDTFSLYRRNSGNNENIPLDETGIAWSSDRESKFKNPHYNNSNTVPPPNWRP----GYENDTP  172 (278)
T ss_pred             CCCCEeecccHhHhhhccceEEeeecccCCCceeeeecccccCchHHHHhcCCCCCccccccCCCceee----eccCCCC
Confidence            5789999999999999999999974    24678999999999999988999853       4667743    1333444


Q ss_pred             CCC-CchhhHHHHHhhccCchhhHhhhhh-ccCCCCCceEEEEEEeeeeccccCceEEEEEeeccccCcCCchhhHHHHH
Q 029539           74 IPL-SEQEDLIVWMRTAALSTFRKLYGKI-EDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFIT  151 (192)
Q Consensus        74 ~~~-~~ne~FivWMr~aalp~FrKLYg~i-~~~l~~g~~y~v~I~nnypv~~f~G~K~ivlst~s~~GgkN~fLgi~ylv  151 (192)
                      .|+ .+|||||||||+|+||+|||||||| +++|++|. |+|+|+|||||+.|+|+|+|||+|.||+||||+||||+||+
T Consensus       173 ~p~~~~ne~fivWMr~a~lp~FrKLYg~i~~~~L~~G~-y~i~I~nnypv~~f~G~K~ivlst~s~~Ggkn~~Lgi~ylv  251 (278)
T PF03381_consen  173 WPDNSENEHFIVWMRPAALPTFRKLYGRIDNDDLPAGN-YTIDITNNYPVSSFGGKKSIVLSTTSWFGGKNYFLGIAYLV  251 (278)
T ss_pred             CCcccccHHHHHHhccccCCCeeEeEeeeccCCCCCce-EEEEEEEeecccccCcEEEEEEEeccccCccccHHHHHHHH
Confidence            454 3699999999999999999999999 88999995 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 029539          152 IGGICLFLAITFILLYVIKPRPLGDPS  178 (192)
Q Consensus       152 vG~i~~i~~~~f~~~~~~~~r~~gd~~  178 (192)
                      +|++|++++++|++.|+++||++||++
T Consensus       252 vg~i~~v~~i~~~~~~~~~~r~~gD~~  278 (278)
T PF03381_consen  252 VGGICLVLAIIFLIIHYFKPRKLGDTS  278 (278)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999986

They have predicted transmembrane helices.; GO: 0016020 membrane

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=89.96  E-value=0.28  Score=38.33  Aligned_cols=26  Identities=19%  Similarity=0.386  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcC
Q 029539          146 GVTFITIGGICLFLAITFILLYVIKP  171 (192)
Q Consensus       146 gi~ylvvG~i~~i~~~~f~~~~~~~~  171 (192)
                      .|+.|++|+++-++++++++.+++++
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~irR   90 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIRR   90 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHH
Confidence            36777777777777777777776654

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	83.25

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=83.25  E-value=2.9  Score=26.14  Aligned_cols=33  Identities=9%  Similarity=0.256  Sum_probs=23.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 029539          142 NDFLGVTFITIGGICLFLAITFILLYVIKPRPL  174 (192)
Q Consensus       142 N~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r~~  174 (192)
                      ....+|+=-|+|++.+++.+++++..+.++|+.
T Consensus         7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~   39 (44)
T 2l2t_A            7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSI   39 (44)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence            344568888888888877777776666666643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00