Citrus Sinensis ID: 029566

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Secondary Structure (PSIPRED)
ccccccccEEEcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFErsglpflsvCSDVLLLLIVLMFFRANFAAFRNKqleslpelevsEEMVNNAAASFRVKINYLLLMAhditvgkdFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVdenvisriprtlskdkvs
Flexible Loop (DISEMBL)
mgggrtadvllwkrrrvsfGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISqhykvvdenvisriprtlskdkvs
Low Complexity Region (SEG)
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMffranfaafrnKQleslpelevseeMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Disordered region (IsUnstruct)
******ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI**********
Disordered Region (DISOPRED)
***GRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDEN*I*************
Disordered Region (DISEMBL)
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Disordered Region (DISPRO)
**GGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPR********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q8GYH6	226	Reticulon-like protein B1	yes	no	1.0	0.845	0.680	3e-75
Q9SUT9	271	Reticulon-like protein B2	no	no	0.989	0.697	0.359	9e-33
Q9SUR3	275	Reticulon-like protein B1	no	no	0.989	0.687	0.349	1e-31
Q6DBN4	253	Reticulon-like protein B6	no	no	0.952	0.719	0.357	1e-30
Q9FFS0	257	Reticulon-like protein B4	no	no	0.989	0.735	0.355	1e-30
Q6NPD8	201	Reticulon-like protein B1	no	no	0.931	0.885	0.342	2e-29
Q9SH59	255	Reticulon-like protein B3	no	no	0.973	0.729	0.338	2e-29
O82352	255	Reticulon-like protein B5	no	no	0.952	0.713	0.357	5e-29
Q9LT71	200	Reticulon-like protein B1	no	no	0.947	0.905	0.349	6e-29
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.984	0.835	0.308	2e-25

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score =  280 bits (717), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 130/191 (68%), Positives = 165/191 (86%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  
Sbjct: 36  MGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARV 95

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
           +AFRN+QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWL
Sbjct: 96  SAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWL 155

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           LSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR
Sbjct: 156 LSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISR 215

Query: 181 IPRTLSKDKVS 191
           +  +LSKDK S
Sbjct: 216 LSWSLSKDKDS 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  139 bits (351), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 110/189 (58%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG+ AD+ +WK +++S GV   ATVAW++FE      L++   V+++ + ++F  +N 
Sbjct: 80  LGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNA 139

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
             F +K    +PE+ + EE +   A+  R++IN  +    +I  G+D + F   +A LW+
Sbjct: 140 TMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWV 199

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           LS +G  +SF TLAYI  +L  TVP  Y ++E +VD Y       + + Y V+D  V S+
Sbjct: 200 LSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSK 259

Query: 181 IPRTLSKDK 189
           IPR   KDK
Sbjct: 260 IPRGPLKDK 268

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 110/189 (58%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG+ AD+ +WK +++S GV+  AT AW++FE      L++   V+++++ ++F  +N 
Sbjct: 84  LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
             F NK    +PE+ + EE +   A+  R++IN       +I  G+D + F   +A LW+
Sbjct: 144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           LS +G  F+F TLAYI  +L  TVP  Y ++E +VD         + + Y V+DE V+S+
Sbjct: 204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263

Query: 181 IPRTLSKDK 189
           IP    K+K
Sbjct: 264 IPLGPLKNK 272

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 106/182 (58%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG  ADV LW+ +++S  V+ VAT  W++FE     FLS+   +L+  +  +F  +N 
Sbjct: 63  LGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNA 122

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
            AF NK    +PE+ + EE      ++ R ++N   ++   I +G+D + F  VV  LW+
Sbjct: 123 HAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWI 182

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           +S +G++F+F TL YI  ++  TVP LY + E +VD       K + +HY V DE V+S+
Sbjct: 183 ISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSK 242

Query: 181 IP 182
           +P
Sbjct: 243 LP 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 110/194 (56%), Gaps = 5/194 (2%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG+ AD+ LW+ ++VS GV+   T +W++FE      L+      +  +  +F  +N 
Sbjct: 63  LGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNA 122

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
             F +K    +PE+ + E+ +    +  R++IN  L +  +I  GKD + F  V+A LW+
Sbjct: 123 CTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWV 182

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDE----N 176
           LS IGS ++F TL Y  T+L  T+P LY ++E +VD Y     + I + Y V+DE     
Sbjct: 183 LSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRK 242

Query: 177 VISRIPR-TLSKDK 189
           VIS+IPR  L+K K
Sbjct: 243 VISKIPRGALNKKK 256

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 105/178 (58%)

Query: 4   GRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAF 63
           G  AD+++WK RR  F ++   T+ W +FE+ G  F     +  LL +V++F  A  A  
Sbjct: 12  GSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAIL 71

Query: 64  RNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSA 123
            N+ +  LP LE++EE V   A + RV IN +L +A +I VG++ +  F+V   LW +S 
Sbjct: 72  FNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSF 131

Query: 124 IGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 181
           +G++ +F T+ Y+G +LS+ +P LY R++  +D    + H+ I   Y+ +DE ++ +I
Sbjct: 132 VGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 110/186 (59%)

Query: 2   GGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFA 61
           GGG+ AD+ LW+ ++VS GV+  ATV+W++FE      L++   + +L + ++F  ++ +
Sbjct: 60  GGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSAS 119

Query: 62  AFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLL 121
            F +K    +PE+ + E++V   A+  R++IN    +  DI  G+D + F  V+A LW+L
Sbjct: 120 TFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVL 179

Query: 122 SAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 181
           S +GS  +F TL YI T+L  T+P LY ++E +VD +     + I + Y   D  V+S++
Sbjct: 180 SKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239

Query: 182 PRTLSK 187
              + K
Sbjct: 240 MSKIPK 245

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 104/182 (57%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG+ ADV LW+ +++S  V+ VAT  W++FE      LS+   + +L +  +F  +N 
Sbjct: 63  LGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNA 122

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
               NK    +PE+ V EE     A+S R ++N   ++   I +G+D + F  VV  LW+
Sbjct: 123 HTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWI 182

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           +S +G++F+F TL YI  ++  TVP LY + E +VD       K + + Y V DE V+S+
Sbjct: 183 ISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSK 242

Query: 181 IP 182
           IP
Sbjct: 243 IP 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1

 Score =  127 bits (318), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 105/189 (55%), Gaps = 8/189 (4%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +G G  AD+LLW+ R  +  +++ +T  W +FER+G   LS  S+VLLLL+ + F  A  
Sbjct: 17  LGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKS 76

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
           A   N+ L  +P +E+ EE  N AA   RV INY+L +A DIT+ ++     QV   LW 
Sbjct: 77  ATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWA 136

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           +S +G+  +  TL YIG LLS++ P +Y +++  +D       K +         N+  +
Sbjct: 137 ISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFV--------RNISRK 188

Query: 181 IPRTLSKDK 189
            P  ++K+K
Sbjct: 189 FPLPINKEK 197

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 103/188 (54%)

Query: 2   GGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFA 61
           GGG+ AD+LLW+  +++  +++  ++ W + E     F+++     +  ++  F  +  +
Sbjct: 35  GGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTAS 94

Query: 62  AFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLL 121
            F N +   +PE+ + E      A SF V+ N +L    D+  G+D  LFF     L+++
Sbjct: 95  DFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIV 154

Query: 122 SAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 181
           S IG+YF+F  L +IG +   T+P +Y  +E  VD   G + + + + YK VD NV+S+I
Sbjct: 155 SIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKI 214

Query: 182 PRTLSKDK 189
           PR   K+K
Sbjct: 215 PRGTVKNK 222

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
359486460	227	PREDICTED: reticulon-like protein B16-li	0.989	0.832	0.777	3e-77
224144977	244	predicted protein [Populus trichocarpa]	1.0	0.782	0.764	5e-77
42572359	226	reticulon-like protein B16 [Arabidopsis	1.0	0.845	0.680	2e-73
145332022	227	reticulon-like protein B16 [Arabidopsis	1.0	0.841	0.682	1e-72
334185244	194	reticulon-like protein B16 [Arabidopsis	0.968	0.953	0.681	2e-70
145362438	193	reticulon-like protein B16 [Arabidopsis	0.968	0.958	0.681	2e-70
238479721	249	reticulon-like protein B16 [Arabidopsis	0.968	0.742	0.682	8e-69
297833878	224	predicted protein [Arabidopsis lyrata su	0.968	0.825	0.666	7e-68
449441250	224	PREDICTED: reticulon-like protein B16-li	0.989	0.843	0.666	6e-67
226496479	228	seed maturation protein [Zea mays] gi|19	0.984	0.824	0.617	2e-65

>gi|359486460|ref|XP_002275157.2| PREDICTED: reticulon-like protein B16-like [Vitis vinifera] gi|297736488|emb|CBI25359.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 147/189 (77%), Positives = 170/189 (89%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ ADVLLWKRRRVS G IVVATVAW++FERSGL FLS+CSDVLL+LIV++F RAN+
Sbjct: 37  MGGGKAADVLLWKRRRVSCGTIVVATVAWILFERSGLSFLSICSDVLLILIVVLFLRANY 96

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
           AAFRNKQL+SLPELE+SEEMVN+ A SFRVKINYLLLMAHDIT+GKDFRLFF+VV  LWL
Sbjct: 97  AAFRNKQLKSLPELELSEEMVNSVAGSFRVKINYLLLMAHDITLGKDFRLFFKVVLGLWL 156

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           LS +GS FSFFTLAYIGT++SITVPALYS++E  VD+Y G+IH+  S+HYK+VDENVI R
Sbjct: 157 LSVVGSSFSFFTLAYIGTIISITVPALYSKYEEHVDKYFGIIHRKFSKHYKLVDENVIRR 216

Query: 181 IPRTLSKDK 189
           IP  LSKDK
Sbjct: 217 IPPGLSKDK 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144977|ref|XP_002325482.1| predicted protein [Populus trichocarpa] gi|222862357|gb|EEE99863.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 146/191 (76%), Positives = 171/191 (89%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MG G+ ADVLLWK   VSFGVI+VATV+W IFERSGLPFL++CSDVLL+LIVL+F RAN 
Sbjct: 54  MGAGKAADVLLWKWWHVSFGVIMVATVSWFIFERSGLPFLTICSDVLLILIVLLFVRANI 113

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
           A   NKQL+SLPEL +SEEMVN+AAASFRVKIN +LLMAHDIT+GKDFRLFF+VV +LWL
Sbjct: 114 ADMINKQLQSLPELVLSEEMVNSAAASFRVKINNVLLMAHDITLGKDFRLFFKVVVFLWL 173

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           LS +GSYFSFFTLAYIGT+LSIT+PALYSR+E RVDR CG+IH+ +S HYK+VDE+VISR
Sbjct: 174 LSTVGSYFSFFTLAYIGTILSITIPALYSRYEERVDRCCGIIHRKLSHHYKIVDESVISR 233

Query: 181 IPRTLSKDKVS 191
           IP++LSKDK S
Sbjct: 234 IPQSLSKDKDS 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572359|ref|NP_974275.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|75151434|sp|Q8GYH6.1|RTNLP_ARATH RecName: Full=Reticulon-like protein B16; Short=AtRTNLB16 gi|26450318|dbj|BAC42275.1| unknown protein [Arabidopsis thaliana] gi|28827594|gb|AAO50641.1| unknown protein [Arabidopsis thaliana] gi|332641451|gb|AEE74972.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/191 (68%), Positives = 165/191 (86%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  
Sbjct: 36  MGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARV 95

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
           +AFRN+QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWL
Sbjct: 96  SAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWL 155

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           LSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR
Sbjct: 156 LSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISR 215

Query: 181 IPRTLSKDKVS 191
           +  +LSKDK S
Sbjct: 216 LSWSLSKDKDS 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332022|ref|NP_001078133.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641453|gb|AEE74974.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  
Sbjct: 36  MGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARV 95

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLW 119
           +AFRN+QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LW
Sbjct: 96  SAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLW 155

Query: 120 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 179
           LLSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVIS
Sbjct: 156 LLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVIS 215

Query: 180 RIPRTLSKDKVS 191
           R+  +LSKDK S
Sbjct: 216 RLSWSLSKDKDS 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185244|ref|NP_001189857.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641455|gb|AEE74976.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 160/185 (86%)

Query: 7   ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK 66
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN+
Sbjct: 10  ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 69

Query: 67  QLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGS 126
           QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGS
Sbjct: 70  QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGS 129

Query: 127 YFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLS 186
           Y S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LS
Sbjct: 130 YISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLS 189

Query: 187 KDKVS 191
           KDK S
Sbjct: 190 KDKDS 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145362438|ref|NP_974276.3| reticulon-like protein B16 [Arabidopsis thaliana] gi|110743729|dbj|BAE99701.1| hypothetical protein [Arabidopsis thaliana] gi|332641452|gb|AEE74973.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 160/185 (86%)

Query: 7   ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK 66
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN+
Sbjct: 9   ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 68

Query: 67  QLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGS 126
           QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGS
Sbjct: 69  QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGS 128

Query: 127 YFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLS 186
           Y S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LS
Sbjct: 129 YISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLS 188

Query: 187 KDKVS 191
           KDK S
Sbjct: 189 KDKDS 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479721|ref|NP_001154603.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641454|gb|AEE74975.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 160/186 (86%), Gaps = 1/186 (0%)

Query: 7   ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK 66
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN+
Sbjct: 64  ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 123

Query: 67  QLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAIG 125
           QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAIG
Sbjct: 124 QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIG 183

Query: 126 SYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTL 185
           SY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +L
Sbjct: 184 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 243

Query: 186 SKDKVS 191
           SKDK S
Sbjct: 244 SKDKDS 249

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833878|ref|XP_002884821.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330661|gb|EFH61080.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 157/186 (84%), Gaps = 1/186 (0%)

Query: 7   ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK 66
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL+ I++ F  A  +AFR +
Sbjct: 39  ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIGIIISFVHARVSAFRKR 98

Query: 67  QLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAIG 125
           QL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAIG
Sbjct: 99  QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIG 158

Query: 126 SYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTL 185
           SY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +L
Sbjct: 159 SYISLCTLVYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 218

Query: 186 SKDKVS 191
           + DK S
Sbjct: 219 TNDKDS 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441250|ref|XP_004138395.1| PREDICTED: reticulon-like protein B16-like [Cucumis sativus] gi|449514721|ref|XP_004164461.1| PREDICTED: reticulon-like protein B16-like [Cucumis sativus]

 Score =  258 bits (660), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 126/189 (66%), Positives = 157/189 (83%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ AD+LLWK+  VS GV+VV+TV WL+ E SGLP L+ CSDVLL+L+VL+F RANF
Sbjct: 34  MGGGKAADILLWKQWHVSIGVLVVSTVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANF 93

Query: 61  AAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
           AAFRNKQL++LP+L +SEE VNN AAS R KIN  LLMAHDITVG DF+LFF++V  LWL
Sbjct: 94  AAFRNKQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHDITVGNDFKLFFRMVIGLWL 153

Query: 121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
           LS +GSY SFFT AY+GT++SIT+PALYS+++  VDRYCGMI +   +HY+V+DE+V SR
Sbjct: 154 LSVVGSYVSFFTFAYVGTIISITIPALYSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSR 213

Query: 181 IPRTLSKDK 189
           +P  LSKDK
Sbjct: 214 LPGGLSKDK 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496479|ref|NP_001149392.1| seed maturation protein [Zea mays] gi|195626916|gb|ACG35288.1| seed maturation protein [Zea mays] gi|223947427|gb|ACN27797.1| unknown [Zea mays] gi|413955798|gb|AFW88447.1| Seed maturation protein isoform 1 [Zea mays] gi|413955799|gb|AFW88448.1| Seed maturation protein isoform 2 [Zea mays]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 154/188 (81%)

Query: 2   GGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFA 61
           GGG+ AD++LW+R RV+FGVI  AT+AW +FE+SGL  L++CSD+LL+LIVL F R   A
Sbjct: 39  GGGKAADIILWRRARVTFGVIFGATLAWWLFEKSGLSLLTICSDILLILIVLQFIRVKIA 98

Query: 62  AFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLL 121
              ++Q   LPEL +SEEMV+NAAASFRVK+N +L++AHDIT+GKDFRLFFQVV  LWLL
Sbjct: 99  GLLDRQPRPLPELVLSEEMVSNAAASFRVKVNSMLMIAHDITLGKDFRLFFQVVIVLWLL 158

Query: 122 SAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 181
           S IG++ S  TLAYIGT+  +T+PALY++++  VDRY GM++++IS+HYK+VDENVISR+
Sbjct: 159 SVIGNFCSSITLAYIGTVALVTMPALYNKYQRPVDRYAGMVYRNISRHYKIVDENVISRL 218

Query: 182 PRTLSKDK 189
           PR   +DK
Sbjct: 219 PRRFIRDK 226

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.968	0.742	0.602	3.3e-56
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.989	0.697	0.322	1.8e-25
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.989	0.735	0.324	2e-24
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.989	0.687	0.306	8.7e-24
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.989	0.741	0.312	1e-22
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.931	0.885	0.286	1.3e-22
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.795	0.748	0.335	5.5e-22
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.984	0.835	0.276	3e-21
TAIR|locus:2046783	206	RTNLB13 "AT2G23640" [Arabidops	0.895	0.830	0.187	6.4e-12
TAIR|locus:2090609	218	AT3G19460 "AT3G19460" [Arabido	0.848	0.743	0.278	1.3e-11

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 112/186 (60%), Positives = 143/186 (76%)

Query:     7 ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXK 66
             AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++            +
Sbjct:    64 ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 123

Query:    67 QXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAIG 125
             Q            MVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAIG
Sbjct:   124 QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIG 183

Query:   126 SYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTL 185
             SY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +L
Sbjct:   184 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 243

Query:   186 SKDKVS 191
             SKDK S
Sbjct:   244 SKDKDS 249

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 61/189 (32%), Positives = 98/189 (51%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXX 60
             +GGG+ AD+ +WK +++S GV   ATVAW++FE      L++   V+++ + ++      
Sbjct:    80 LGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNA 139

Query:    61 XXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
                  K              +   A+  R++IN  +    +I  G+D + F   +A LW+
Sbjct:   140 TMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWV 199

Query:   121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
             LS +G  +SF TLAYI  +L  TVP  Y ++E +VD Y       + + Y V+D  V S+
Sbjct:   200 LSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSK 259

Query:   181 IPRTLSKDK 189
             IPR   KDK
Sbjct:   260 IPRGPLKDK 268

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 63/194 (32%), Positives = 98/194 (50%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXX 60
             +GGG+ AD+ LW+ ++VS GV+   T +W++FE      L+      +  +  +      
Sbjct:    63 LGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNA 122

Query:    61 XXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
                  K              +    +  R++IN  L +  +I  GKD + F  V+A LW+
Sbjct:   123 CTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWV 182

Query:   121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENV--- 177
             LS IGS ++F TL Y  T+L  T+P LY ++E +VD Y     + I + Y V+DE V   
Sbjct:   183 LSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRK 242

Query:   178 -ISRIPR-TLSKDK 189
              IS+IPR  L+K K
Sbjct:   243 VISKIPRGALNKKK 256

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 58/189 (30%), Positives = 98/189 (51%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXX 60
             +GGG+ AD+ +WK +++S GV+  AT AW++FE      L++   V+++++ ++      
Sbjct:    84 LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query:    61 XXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
                  K              +   A+  R++IN       +I  G+D + F   +A LW+
Sbjct:   144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query:   121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
             LS +G  F+F TLAYI  +L  TVP  Y ++E +VD         + + Y V+DE V+S+
Sbjct:   204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263

Query:   181 IPRTLSKDK 189
             IP    K+K
Sbjct:   264 IPLGPLKNK 272

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 59/189 (31%), Positives = 95/189 (50%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXX 60
             +GGG+ ADV LW+ +++S  V+ VAT  W++FE      LS+   + +L +  +      
Sbjct:    63 LGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNA 122

Query:    61 XXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
                  K                  A+S R ++N   ++   I +G+D + F  VV  LW+
Sbjct:   123 HTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWI 182

Query:   121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 180
             +S +G++F+F TL YI  ++  TVP LY + E +VD       K + + Y V DE V+S+
Sbjct:   183 ISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSK 242

Query:   181 IPRTLSKDK 189
             IP    K K
Sbjct:   243 IPIASLKAK 251

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/178 (28%), Positives = 92/178 (51%)

Query:     4 GRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXX 63
             G  AD+++WK RR  F ++   T+ W +FE+ G  F     +  LL +V++         
Sbjct:    12 GSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAIL 71

Query:    64 XXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSA 123
               +              V   A + RV IN +L +A +I VG++ +  F+V   LW +S 
Sbjct:    72 FNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSF 131

Query:   124 IGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 181
             +G++ +F T+ Y+G +LS+ +P LY R++  +D    + H+ I   Y+ +DE ++ +I
Sbjct:   132 VGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 51/152 (33%), Positives = 81/152 (53%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXX 60
             +GGG  ADV+LW+++ VS G++ V   +W++FE       ++ S VLLLL+ ++      
Sbjct:    19 LGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKS 78

Query:    61 XXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 120
                  +             M   A+   R+ +N LL ++HDI + +D  L+ +V   L+L
Sbjct:    79 ASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFL 138

Query:   121 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 152
             LS IGS   F TL +   L+ +TVPA Y R+E
Sbjct:   139 LSLIGSLMDFQTLCHTSVLVVMTVPAFYERYE 170

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 52/188 (27%), Positives = 92/188 (48%)

Query:     2 GGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXX 61
             GGG+ AD+LLW+  +++  +++  ++ W + E     F+++     +  ++         
Sbjct:    35 GGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTAS 94

Query:    62 XXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLL 121
                  +                 A SF V+ N +L    D+  G+D  LFF     L+++
Sbjct:    95 DFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIV 154

Query:   122 SAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 181
             S IG+YF+F  L +IG +   T+P +Y  +E  VD   G + + + + YK VD NV+S+I
Sbjct:   155 SIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKI 214

Query:   182 PRTLSKDK 189
             PR   K+K
Sbjct:   215 PRGTVKNK 222

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046783 RTNLB13 "AT2G23640" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 32/171 (18%), Positives = 76/171 (44%)

Query:     8 DVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQ 67
             D+ LW+R++++F  ++V+T  W++    G   +++ S + + ++ ++           K 
Sbjct:    18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKV 77

Query:    68 XXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSY 127
                          V     S R+ +  ++     +    ++ +F + V   W+LS IG+ 
Sbjct:    78 EPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNL 137

Query:   128 FSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVI 178
               F T  +IG ++ +TVP L+  +  ++ ++ G +       Y    E ++
Sbjct:   138 LDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKIL 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2090609 AT3G19460 "AT3G19460" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 46/165 (27%), Positives = 71/165 (43%)

Query:     7 ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXK 66
             AD+LLW+ R  +  +++ +T  W +FER+G   LS  S+VLLLL+ +            +
Sbjct:     7 ADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNR 66

Query:    67 QXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKD-FRLFFQVVAYLWLLSAIG 125
                            N AA   RV INY+L +A DIT+ ++  RL      +LW    I 
Sbjct:    67 PLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVFFHHLW--QTIC 124

Query:   126 SYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHY 170
               F F  + Y+   +S                Y G +  S++  Y
Sbjct:   125 CIFLFLHVMYLTVHISFVFAVKQVSLVLWAISYVGTLINSLTLVY 169

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYH6	RTNLP_ARATH	No assigned EC number	0.6806	1.0	0.8451	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029447001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (227 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	191
pfam02453	164	pfam02453, Reticulon, Reticulon	6e-41

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  135 bits (343), Expect = 6e-41
 Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 1/164 (0%)

Query: 6   TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRN 65
            AD+LLW+  + S  V     V WL+F  SG   LSV S +LLLL+ + F         N
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 66  KQLESL-PELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAI 124
              E L P++ +SEE V   A S RV IN  L     + +G+D     +    LWLLS +
Sbjct: 61  AVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYL 120

Query: 125 GSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQ 168
           GS FS  TL YIG +L+ TVP LY +++  +D Y       + +
Sbjct: 121 GSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.29
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	95.04
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	93.92
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	93.21
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	85.84

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-49  Score=328.76  Aligned_cols=188  Identities=40%  Similarity=0.726  Sum_probs=181.9

Q ss_pred             CCCCcccceeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC--CCC-ccee
Q 029566            1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK-QLE--SLP-ELEV   76 (191)
Q Consensus         1 lgg~~v~DlllWrd~~~S~~vf~~~~~~~~l~~~~~~s~isvv~~~~l~~l~~~fl~~~~~~~~~~-~~~--~~p-~~~i   76 (191)
                      +|||+++|+++|||+|.||.++++++++|++|+..+|+.++++|+++++.+.+.|.|.+...+++| ++|  ..| ++++
T Consensus        38 lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~i  117 (230)
T KOG1792|consen   38 LGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITI  117 (230)
T ss_pred             CCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeec
Confidence            689999999999999999999999999999999999999999999999999999999988887777 666  678 9999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHH
Q 029566           77 SEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVD  156 (191)
Q Consensus        77 s~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~ID  156 (191)
                      |||.+++.+++++.++|+.+.++|++++|+|+.+++|+++.||++|++|+|||++|++|+|++++||+|++||+|||+||
T Consensus       118 pee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID  197 (230)
T KOG1792|consen  118 PEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQID  197 (230)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 029566          157 RYCGMIHKSISQHYKVVDENVISRIPRTLSKD  188 (191)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~~  188 (191)
                      +++++++++.+++|+++|+|+++|||+++.++
T Consensus       198 ~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~  229 (230)
T KOG1792|consen  198 PYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK  229 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence            99999999999999999999999999988764

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=2.2e-39  Score=254.90  Aligned_cols=163  Identities=31%  Similarity=0.515  Sum_probs=46.8

Q ss_pred             ccceeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCCcceecHH
Q 029566            6 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQL------ESLPELEVSEE   79 (191)
Q Consensus         6 v~DlllWrd~~~S~~vf~~~~~~~~l~~~~~~s~isvv~~~~l~~l~~~fl~~~~~~~~~~~~------~~~p~~~is~e   79 (191)
                      |+|+++||||++||.+|++++++|++++++++|++|++|+++++.+++.+++....+.+++.+      ++.++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            689999999999999999999999999999999999999999999888888877766666644      33347899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHHH
Q 029566           80 MVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYC  159 (191)
Q Consensus        80 ~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~ID~~~  159 (191)
                      +++++++.+++.+|..++.+|+++.+||+..|+++++++|+++++|+++|++|+++++++++||+|.+||+||++||+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~  160 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV  160 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 029566          160 GMIHKSISQ  168 (191)
Q Consensus       160 ~~~~~~~~~  168 (191)
                      +++++++||
T Consensus       161 ~~~~~~~~k  169 (169)
T PF02453_consen  161 AKVKEKVKK  169 (169)
T ss_dssp             ---------
T ss_pred             HHHHHHhcC
Confidence            999998875

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.29  E-value=0.0058  Score=57.70  Aligned_cols=159  Identities=11%  Similarity=0.118  Sum_probs=101.1

Q ss_pred             ccceeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHHhcc---------CCCCCC-
Q 029566            6 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLI---VLMFFRANFAAFRNK---------QLESLP-   72 (191)
Q Consensus         6 v~DlllWrd~~~S~~vf~~~~~~~~l~~~~~~s~isvv~~~~l~~l---~~~fl~~~~~~~~~~---------~~~~~p-   72 (191)
                      +-++..|+||.+|...++....  ..+.       ..+.|++-..+   ++..+|....+..++         +|+.+. 
T Consensus       506 ~~~l~~We~P~kt~~Fl~~~~~--iI~r-------~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTv  576 (683)
T PF04842_consen  506 LQKLASWEEPLKTLVFLALFLY--IIYR-------GWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTV  576 (683)
T ss_pred             HHHHhhccCcchhHHHHHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHH
Confidence            4578899999999554443333  2221       23344333222   233355333212222         111111 


Q ss_pred             cceecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhch
Q 029566           73 ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE  152 (191)
Q Consensus        73 ~~~is~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q  152 (191)
                      +-.+.-......++......|-++-++|.|++...+..+-++++.|..++.+-..+-+--++.+.++-.||-..=+.+- 
T Consensus       577 EqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~-  655 (683)
T PF04842_consen  577 EQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRE-  655 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh-
Confidence            3334445555667777888999999999999999999999999999999999999999999999999999864432211 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 029566          153 ARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSK  187 (191)
Q Consensus       153 ~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~  187 (191)
                           -.++..+++++-+        ..||-+|..
T Consensus       656 -----s~er~~RRlrEWW--------~sIPAaPV~  677 (683)
T PF04842_consen  656 -----SSERFNRRLREWW--------DSIPAAPVQ  677 (683)
T ss_pred             -----hHHHHHHHHHHHH--------hhCCccceE
Confidence                 1234445555554        467877653

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=0.098  Score=43.68  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=66.2

Q ss_pred             HHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc-----------------------hH
Q 029566           97 LMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF-----------------------EA  153 (191)
Q Consensus        97 ~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~-----------------------q~  153 (191)
                      .+..|+++|+|.+.++.+.++..++-.+-..++..++...+.+++++++..|.++                       |+
T Consensus        41 ~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee  120 (230)
T KOG1792|consen   41 GKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEE  120 (230)
T ss_pred             CchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHH
Confidence            3678999999999999999999888888888888888888888888877777665                       56


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 029566          154 RVDRYCGMIHKSISQHYKVVDE  175 (191)
Q Consensus       154 ~ID~~~~~~~~~~~~~~~~~~~  175 (191)
                      .++++.+.++.++|...++.++
T Consensus       121 ~~~~~a~~~~~~in~~l~~l~~  142 (230)
T KOG1792|consen  121 FVLALASSLRVEINQALSELRD  142 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888777664

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=93.92  E-value=0.48  Score=37.27  Aligned_cols=66  Identities=12%  Similarity=0.067  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhh
Q 029566           85 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSR  150 (191)
Q Consensus        85 a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~  150 (191)
                      ++.+...+....++++.++.++|+..|..+++++++.+.+-.+..+..++.+..+-.++=|++-..
T Consensus        71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~  136 (156)
T PF08372_consen   71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNP  136 (156)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCC
Confidence            344445566678999999999999999999999988888877777777777777777777776553

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=93.21  E-value=1.3  Score=38.79  Aligned_cols=21  Identities=14%  Similarity=0.469  Sum_probs=15.2

Q ss_pred             cccceeeccccchhHHHHHHH
Q 029566            5 RTADVLLWKRRRVSFGVIVVA   25 (191)
Q Consensus         5 ~v~DlllWrd~~~S~~vf~~~   25 (191)
                      .+.++++|+||..|-..+...
T Consensus        31 ~vl~il~W~~p~~t~~~L~l~   51 (359)
T PF06398_consen   31 RVLRILTWTNPDYTLSFLLLY   51 (359)
T ss_pred             HHHHeEEeCCCCcchHHHHHH
Confidence            467899999999885544333

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=85.84  E-value=0.49  Score=37.23  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=19.8

Q ss_pred             CCcccceeeccccchhHHHHHHHHH
Q 029566            3 GGRTADVLLWKRRRVSFGVIVVATV   27 (191)
Q Consensus         3 g~~v~DlllWrd~~~S~~vf~~~~~   27 (191)
                      |+++..++.||||..|+....++.+
T Consensus        82 gERl~allsWrdP~aT~lf~~~clv  106 (156)
T PF08372_consen   82 GERLQALLSWRDPRATALFVVFCLV  106 (156)
T ss_pred             HHHHHHhhccCCccHHHHHHHHHHH
Confidence            5678899999999999776655444

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.85
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	98.34

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.85  E-value=2.4e-10  Score=78.61  Aligned_cols=61  Identities=18%  Similarity=0.117  Sum_probs=56.5

Q ss_pred             HHH-HHHHHHHHhccCCCCCC-------cceecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 029566           53 LMF-FRANFAAFRNKQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQ  113 (191)
Q Consensus        53 ~~f-l~~~~~~~~~~~~~~~p-------~~~is~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk  113 (191)
                      .+| +|+.+.+.++|+++++|       |+.+|+|.+++.++.+..++|.+++++|+++++||+.+|+|
T Consensus        11 ~sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           11 RGMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             --CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            456 89999999999999999       89999999999999999999999999999999999999875

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=98.34  E-value=7.8e-09  Score=67.71  Aligned_cols=51  Identities=22%  Similarity=0.190  Sum_probs=46.3

Q ss_pred             HHHHHHHhccCCCCCC-------cceecHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 029566           57 RANFAAFRNKQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD  107 (191)
Q Consensus        57 ~~~~~~~~~~~~~~~p-------~~~is~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d  107 (191)
                      |+++.+.++|+++.||       |+.+|+|.+++.++.+..++|.++.++|+++++||
T Consensus         3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            4556677888888889       89999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00