Citrus Sinensis ID: 029595

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSVLCSKHHWSLSTLANLPQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEEEEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccEEcccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHcccccHHHHccccccEEEEEHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAvgilpsgvwlpfmqwcgRTLFFLVTACEIVQVSVLCSkhhwslstlanlpqvhyVHSTISyrstwgnvtpkpsisIYEREKYLCKflcwppfqllqccpgcicdvsicldQTLLTYAQATGFKTG
Flexible Loop (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSVLCSKHHWSLSTLANLPQVHYVHSTisyrstwgnvtpKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Low Complexity Region (SEG)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSVLCSKHHWSLSTLANLPQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Disordered region (IsUnstruct)
*******IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSVLCSKHHWSLSTLANLPQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQAT*****
Disordered Region (DISOPRED)
*****QP**LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSVLCSKHHWSLSTLANLPQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGF***
Disordered Region (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSVLCSKHHWSLSTLANLPQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Disordered Region (DISPRO)
****RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSVLCSKHHWSLSTLANLPQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATG****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSVLCSKHHWSLSTLANLPQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q2KIP8	254	Very-long-chain (3R)-3-hy	yes	no	0.397	0.299	0.355	0.0002
Q7SY06	359	Very-long-chain (3R)-3-hy	no	no	0.465	0.247	0.322	0.0002
Q5RBK3	255	Very-long-chain (3R)-3-hy	yes	no	0.397	0.298	0.355	0.0002
Q6Y1H2	254	Very-long-chain (3R)-3-hy	yes	no	0.397	0.299	0.355	0.0002
Q9D3B1	254	Very-long-chain (3R)-3-hy	yes	no	0.397	0.299	0.355	0.0003

>sp|Q2KIP8|HACD2_BOVIN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Bos taurus GN=PTPLB PE=2 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTL 86
           PS V L  +Q   R  
Sbjct: 101 PSSVVLTSIQVMSRVF 116

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.
Bos taurus (taxid: 9913)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q7SY06|HADC_DANRE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase OS=Danio rerio GN=ptplad1 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 9   KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
           K +LF YN +Q  G  WI     +   +L   S   TF +  ++++  Q  A +EV++ A
Sbjct: 144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203

Query: 67  VGILPSGVWLPFMQWCGRT--LFFLVTACEIVQ 97
           VG++ +GV   F+Q  GR   LF +  + E +Q
Sbjct: 204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQ 236

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis. Involved in Rac1-signaling pathways leading to the modulation of gene expression.

Danio rerio (taxid: 7955)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RBK3|HACD2_PONAB Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Pongo abelii GN=PTPLB PE=2 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 42  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 101

Query: 71  PSGVWLPFMQWCGRTL 86
           PS V L   Q   R  
Sbjct: 102 PSSVVLTSFQVMSRVF 117

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q6Y1H2|HACD2_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Homo sapiens GN=PTPLB PE=1 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTL 86
           PS V L   Q   R  
Sbjct: 101 PSSVVLTSFQVMSRVF 116

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9D3B1|HACD2_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Mus musculus GN=Ptplb PE=2 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S    +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTL 86
           PS V L   Q   R  
Sbjct: 101 PSSVVLTSFQVMSRVF 116

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2174319	272	AT5G59770 "AT5G59770" [Arabido	0.549	0.386	0.369	5.4e-15
UNIPROTKB|Q2KIP8	254	PTPLB "Very-long-chain (3R)-3-	0.643	0.484	0.310	1.4e-05
UNIPROTKB|Q6Y1H2	254	PTPLB "Very-long-chain (3R)-3-	0.643	0.484	0.310	2e-05
MGI|MGI:1918007	254	Ptplb "protein tyrosine phosph	0.534	0.401	0.339	3.6e-05
UNIPROTKB|H3BMZ1	139	PTPLAD1 "Very-long-chain (3R)-	0.465	0.640	0.301	0.00016
MGI|MGI:1914025	232	Ptplad2 "protein tyrosine phos	0.607	0.5	0.307	0.0003
ZFIN|ZDB-GENE-040426-1200	404	ptplad1 "protein tyrosine phos	0.465	0.220	0.322	0.00039
WB|WBGene00020517	218	hpo-8 [Caenorhabditis elegans	0.486	0.426	0.294	0.0006

TAIR|locus:2174319 AT5G59770 "AT5G59770" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 41/111 (36%), Positives = 63/111 (56%)

Query:    25 VAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGR 84
             +++ ++L++ LS K+I   +ASAG +I + QTAA LEV+HGA+GI+PSG   P MQW GR
Sbjct:    73 ISLLIILNSFLSNKTIISAYASAGFLISLFQTAAILEVLHGAIGIVPSGFLSPLMQWSGR 132

Query:    85 TLFFLVTACEIVQVS----VLCSKHHWSLSTLANLPQVHYVHSTISYRSTW 131
             T F L    +I +V     +  +   W +  +   P  HY  + +     W
Sbjct:   133 THFILAIVGQIKEVQDSPWLSITLVAWCIGEMIRYP--HYAFTCLGRCPYW 181

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2KIP8 PTPLB "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2" [Bos taurus (taxid:9913)]

 Score = 119 (46.9 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 41/132 (31%), Positives = 62/132 (46%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRT-LFFLVT-ACEIVQV--SVLCSKHHWSLSTLANLPQVHYVHSTIS 126
             PS V L  +Q   R  L + VT + + VQ   SVL     W+++ +       Y  S ++
Sbjct:   101 PSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYS--FYTFSLLN 158

Query:   127 ---YRSTWGNVT 135
                Y   W   T
Sbjct:   159 HLPYLIKWARYT 170

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|Q6Y1H2 PTPLB "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 41/132 (31%), Positives = 61/132 (46%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRT-LFFLVT-ACEIVQV--SVLCSKHHWSLSTLANLPQVHYVHSTIS 126
             PS V L   Q   R  L + VT + + VQ   SVL     W+++ +       Y  S ++
Sbjct:   101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYS--FYTFSLLN 158

Query:   127 ---YRSTWGNVT 135
                Y   W   T
Sbjct:   159 HLPYLIKWARYT 170

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1918007 Ptplb "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b" [Mus musculus (taxid:10090)]

 Score = 116 (45.9 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 36/106 (33%), Positives = 53/106 (50%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S    +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRT-LFFLVT-ACEIVQV--SVLCSKHHWSLSTL 112
             PS V L   Q   R  L + VT + + VQ   SVL     W+++ +
Sbjct:   101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 146

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|H3BMZ1 PTPLAD1 "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct:    30 KGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAA 89

Query:    67 VGILPSGVWLPFMQWCGRT--LFFLVTACEIVQ 97
             +G+  S V    +Q  GR   LF +    E +Q
Sbjct:    90 IGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQ 122

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0007254 "JNK cascade" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

MGI|MGI:1914025 Ptplad2 "protein tyrosine phosphatase-like A domain containing 2" [Mus musculus (taxid:10090)]

 Score = 108 (43.1 bits), Expect = 0.00030, P = 0.00030
 Identities = 39/127 (30%), Positives = 64/127 (50%)

Query:    10 LYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAV 67
             +YLF Y  +Q  G  WI+A   +        S+A TF + G ++ + Q+ + LE++H  +
Sbjct:    18 VYLFIYYLIQFCGHSWILANMTVRFFSFGKDSMADTFYAIGLVMRVCQSISLLELLHIYI 77

Query:    68 GILPSGVWLPFMQWCGRT--LFFLVTACEIVQVS-VLCSKHH-WSLSTLANLPQVHYVHS 123
             GI  + ++  F+Q   R   LF ++T+ E VQ   V+C     W+L     L  V Y +S
Sbjct:    78 GIESNQLFPRFLQLTERVIILFGVITSQEEVQEKCVVCVLFILWNL-----LDMVRYTYS 132

Query:   124 TISYRST 130
              +S   T
Sbjct:   133 MLSVIGT 139

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1200 ptplad1 "protein tyrosine phosphatase-like A domain containing 1" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 0.00039, P = 0.00039
 Identities = 30/93 (32%), Positives = 49/93 (52%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K +LF YN +Q  G  WI     +   +L   S   TF +  ++++  Q  A +EV++ A
Sbjct:   144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203

Query:    67 VGILPSGVWLPFMQWCGRT--LFFLVTACEIVQ 97
             VG++ +GV   F+Q  GR   LF +  + E +Q
Sbjct:   204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQ 236

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

WB|WBGene00020517 hpo-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 105 (42.0 bits), Expect = 0.00060, P = 0.00059
 Identities = 28/95 (29%), Positives = 44/95 (46%)

Query:     8 IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAV 67
             ++ YL  YN LQ  GW   +   +  L +  +    + S    + I QTAA LEV+H  V
Sbjct:     3 VQTYLVAYNVLQILGWSAILVKTVLGLANGLTWPQLYESVEFELKIFQTAAILEVIHAIV 62

Query:    68 GILPSGVWLPFMQWCGRTLFF--LVTACEIVQVSV 100
             G++ S V    MQ   R +    ++  C   + S+
Sbjct:    63 GLVRSPVGTTAMQVTSRVVLVWPILHLCSTARFSI 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.138   0.468    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      191       191   0.00094  110 3  11 22  0.36    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  192 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.40u 0.12s 15.52t   Elapsed:  00:00:01
  Total cpu time:  15.41u 0.12s 15.53t   Elapsed:  00:00:01
  Start:  Sat May 11 04:02:05 2013   End:  Sat May 11 04:02:06 2013

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	191
pfam04387	161	pfam04387, PTPLA, Protein tyrosine phosphatase-lik	9e-07
PLN02838	221	PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase	0.001

>gnl|CDD|202993 pfam04387, PTPLA, Protein tyrosine phosphatase-like protein, PTPLA

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 55 QTAAFLEVVHGAVGILPSGVWLPFMQWCGRT--LFFLVTACEIVQVS 99
          QT A LE++H A G++ S V   F+Q   R   ++ ++ +   VQ S
Sbjct: 1  QTLAVLEILHAAFGLVRSPVLTTFLQVSSRLFVVWGILYSLPEVQAS 47

This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types. Length = 161

>gnl|CDD|166479 PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase subunit of elongase

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 9  KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
          +LYL  YN +   GW   +++ ++ L  +   A  +A+    + + QTAA LE++HG VG
Sbjct: 10 RLYLTVYNWVVFIGWAQVLYLAVTTLKESGHEA-VYAAVERPLQLAQTAAVLEILHGLVG 68

Query: 69 ILPSGV 74
          ++ S V
Sbjct: 69 LVRSPV 74

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PLN02838	221	3-hydroxyacyl-CoA dehydratase subunit of elongase	100.0
KOG3187	223	consensus Protein tyrosine phosphatase-like protei	100.0
COG5198	209	Ptpl Protein tyrosine phosphatase-like protein (co	99.95
PF04387	164	PTPLA: Protein tyrosine phosphatase-like protein,	99.95

>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase

Probab=100.00  E-value=2.3e-42  Score=295.40  Aligned_cols=130  Identities=21%  Similarity=0.336  Sum_probs=120.3

Q ss_pred             CCCcchhhhhHHhHHHHHHHHHHHHHHHHHHHcCCCcchhhHhHHHHHHHHHHHHHHHHHhhhcccccCcccchhhhhhh
Q 029595            4 QRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCG   83 (191)
Q Consensus         4 ~~~l~~~YL~lYN~vq~~GWs~IL~~ll~~~l~~g~~~~~y~~v~~~l~i~QtlAvLEIvHaa~GLVrS~v~tT~mQV~s   83 (191)
                      .++++|.||++||++|++||++||++++.++...|+ +++|+++++.++++|++|++||+|+++|+||||+.+|+|||+|
T Consensus         5 ~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~-~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~QV~s   83 (221)
T PLN02838          5 GSLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGH-EAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGS   83 (221)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHHHHHH
Confidence            346889999999999999999999999999988774 4679999999999999999999999999999999999999999


Q ss_pred             heeeeeeeecccccccc----eeeeeehhhhhhcccchhHHHHHh-CCCCc---ceeeecC
Q 029595           84 RTLFFLVTACEIVQVSV----LCSKHHWSLSTLANLPQVHYVHST-ISYRS---TWGNVTP  136 (191)
Q Consensus        84 Rl~Ivw~I~~~~Pe~~~----~~lllAWSitEIIRY~y~~Y~~~L-lg~~~---tWLRYt~  136 (191)
                      |++++|+|+...||+++    +.|++|||++|+|||||  |++++ .|..|   +|||||.
T Consensus        84 R~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~y--Y~~~~~~~~~p~~L~WLRYt~  142 (221)
T PLN02838         84 RLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSF--FGMKEAFGFAPSWLLWLRYST  142 (221)
T ss_pred             HHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCcHHHHHHHHhc
Confidence            99999999999999876    77999999999999999  99985 47654   9999997

>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=253.80  Aligned_cols=129  Identities=23%  Similarity=0.338  Sum_probs=122.7

Q ss_pred             CcchhhhhHHhHHHHHHHHHHHHHHHHHHHcCCCcchhhHhHHHHHHHHHHHHHHHHHhhhcccccCcccchhhhhhhhe
Q 029595            6 QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRT   85 (191)
Q Consensus         6 ~l~~~YL~lYN~vq~~GWs~IL~~ll~~~l~~g~~~~~y~~v~~~l~i~QtlAvLEIvHaa~GLVrS~v~tT~mQV~sRl   85 (191)
                      .+++.||++||++|++||++++..+......+|+.+++|+++.+.++++|++|++|++|+.+|+|+||+++|++||.||+
T Consensus         7 ~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~sRl   86 (223)
T KOG3187|consen    7 MLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVSSRL   86 (223)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeecccc
Confidence            46899999999999999999999999999889988889999999999999999999999999999999999999999999


Q ss_pred             eeeeeeecccccccc----eeeeeehhhhhhcccchhHHHHHhCCCCc---ceeeecC
Q 029595           86 LFFLVTACEIVQVSV----LCSKHHWSLSTLANLPQVHYVHSTISYRS---TWGNVTP  136 (191)
Q Consensus        86 ~Ivw~I~~~~Pe~~~----~~lllAWSitEIIRY~y~~Y~~~Llg~~~---tWLRYt~  136 (191)
                      +++|++++..|+.++    ..++.+|+++|||||+|  |+++++|..|   +|||||.
T Consensus        87 ~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~f--Y~f~~~~~~p~~l~wlRYt~  142 (223)
T KOG3187|consen   87 FILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSF--YAFNLLGVLPKLLTWLRYTL  142 (223)
T ss_pred             eehhhhhhccchhhccchHHHHHHHHHHHHHHHHHH--HHHHhccCCchhhhHhhhhh
Confidence            999999999999884    88899999999999999  9999998864   9999996

>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]

Probab=99.95  E-value=2.9e-29  Score=208.82  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=113.6

Q ss_pred             cchhhhhHHhHHHHHHHHHHHHHHHHHHHcCCCcchhhHhHHHHHHHHHHHHHHHHHhhhcccccCcccchhhhhhhhee
Q 029595            7 PIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTL   86 (191)
Q Consensus         7 l~~~YL~lYN~vq~~GWs~IL~~ll~~~l~~g~~~~~y~~v~~~l~i~QtlAvLEIvHaa~GLVrS~v~tT~mQV~sRl~   86 (191)
                      ++-.||-+||.+++.+|.+++.....-+-..++++ .|++......++|++|++|++|+.+|.|+|+++||.|||.||++
T Consensus         5 l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~dpa-~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SRl~   83 (209)
T COG5198           5 LPISYLRLYNTASCFIWCIVLLLASLVFYKTMDPA-VFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISRLF   83 (209)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHH
Confidence            44589999999999999999998888777778877 68899999999999999999999999999999999999999999


Q ss_pred             eeeeeeccccc-ccc---eeeeeehhhhhhcccchhHHHHHhCCCC--cceeeecCC
Q 029595           87 FFLVTACEIVQ-VSV---LCSKHHWSLSTLANLPQVHYVHSTISYR--STWGNVTPK  137 (191)
Q Consensus        87 Ivw~I~~~~Pe-~~~---~~lllAWSitEIIRY~y~~Y~~~Llg~~--~tWLRYt~~  137 (191)
                      ++|||+++... +++   ..+.+|||+||++||.|  |++++-|.+  .+||||+.-
T Consensus        84 ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYaf--Y~F~lng~p~~l~~lRYNlF  138 (209)
T COG5198          84 IVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAF--YTFRLNGIPNTLRVLRYNLF  138 (209)
T ss_pred             HHHhhhhccccccccchHHHHHHHHHHHHHHHHHH--HHHHhcCCchhhhhhhhhhh
Confidence            99999955443 344   89999999999999999  999986643  599999963

>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=99.95  E-value=4.1e-30  Score=210.74  Aligned_cols=80  Identities=28%  Similarity=0.390  Sum_probs=76.8

Q ss_pred             HHHHHHHHHhhhcccccCcccchhhhhhhheeeeeeeecccccccc----eeeeeehhhhhhcccchhHHHHHhCCCCc-
Q 029595           55 QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSV----LCSKHHWSLSTLANLPQVHYVHSTISYRS-  129 (191)
Q Consensus        55 QtlAvLEIvHaa~GLVrS~v~tT~mQV~sRl~Ivw~I~~~~Pe~~~----~~lllAWSitEIIRY~y~~Y~~~Llg~~~-  129 (191)
                      |++|++||+|+++|+||||+.+|++||+||++++|+++...||.++    .+|++|||++|+|||||  |+++++|..| 
T Consensus         1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~y--Y~~~l~~~~p~   78 (164)
T PF04387_consen    1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPY--YALKLLGIVPY   78 (164)
T ss_pred             CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHH--HHHHhcCCCch
Confidence            8999999999999999999999999999999999999999999865    99999999999999999  9999999875 


Q ss_pred             --ceeeecC
Q 029595          130 --TWGNVTP  136 (191)
Q Consensus       130 --tWLRYt~  136 (191)
                        +|||||+
T Consensus        79 ~L~WLRYs~   87 (164)
T PF04387_consen   79 WLTWLRYSA   87 (164)
T ss_pred             HHHHHHHhh
Confidence              9999996

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00