Citrus Sinensis ID: 029632

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MVKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYTIDD
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEEEEcccccccccccEEEEccccccccccccccccccccEEEEEEEEEcccccccEEEcccccccccccccccEEEEEEEcccccccccccccccccEEEccccccccccccccEEEEEEcccEEEEEEcccccccccccccccEEEEcccccccccccccEEEEcccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEEEccHHHcccccEEEEEccccccccHcccEEEccccccEEEEEEEccccccEEEEEEcHHHHHHccccccccEEEEEcccccccccccccccccEEEEcccccccccccHHHEEEEEEccccEEEEcccccccccccccccEEEEEEEEcccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
MVKMEKQEEVVTVKLRAIEATAESFKEYGQVIEasadgeefgpqdaqldlsrgiprfyvmhlenrplkfstithHASVTQClgsigghvwylgvakpsildstetegdmgtnivrshcghfyvppaiedVRVFKIagpkflklnrgtwhagplfkaddmdfynlelsntnvvdhtthsfkkngvvytidd
Flexible Loop (DISEMBL)
mvkmekqeevVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSntnvvdhtthsfkkngvvytidd
Low Complexity Region (SEG)
MVKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYTIDD
Disordered region (IsUnstruct)
**********VTVKLRAIEATAESFKEYGQVI***************LDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYT***
Disordered Region (DISOPRED)
**************LRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDS********TNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYTIDD
Disordered Region (DISEMBL)
*********VVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYTIDD
Disordered Region (DISPRO)
*****KQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDS*ET**DMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYTIDD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYTIDD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
357443405	186	hypothetical protein MTR_1g095890 [Medic	0.963	0.983	0.772	6e-81
225449156	192	PREDICTED: uncharacterized protein LOC10	0.936	0.927	0.782	1e-79
388497408	185	unknown [Lotus japonicus]	0.963	0.989	0.739	6e-78
351724593	185	uncharacterized protein LOC100526980 [Gl	0.936	0.962	0.759	7e-76
129594025	185	putative ureidoglycolate hydrolase [Phas	0.963	0.989	0.728	7e-76
147819145	319	hypothetical protein VITISV_021301 [Viti	0.842	0.501	0.8	9e-75
226490954	244	uncharacterized protein LOC100279019 [Ze	0.994	0.774	0.685	1e-74
195643516	189	hypothetical protein [Zea mays] gi|19565	0.984	0.989	0.693	5e-74
351723905	187	uncharacterized protein LOC100306085 [Gl	0.936	0.951	0.737	1e-72
242054885	279	hypothetical protein SORBIDRAFT_03g03892	0.994	0.677	0.670	2e-71

>gi|357443405|ref|XP_003591980.1| hypothetical protein MTR_1g095890 [Medicago truncatula] gi|355481028|gb|AES62231.1| hypothetical protein MTR_1g095890 [Medicago truncatula]

 Score =  305 bits (781), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 143/185 (77%), Positives = 165/185 (89%), Gaps = 2/185 (1%)

Query: 8   EEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRG-IPRFYVMHLENRP 66
           E V  VK++AIEAT  +FK+YGQVIEAS+DGE FGP DAQLDLS+G IPRFY+MHLENRP
Sbjct: 2   ESVKVVKVKAIEATPATFKDYGQVIEASSDGEGFGPNDAQLDLSKGGIPRFYIMHLENRP 61

Query: 67  LKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPA 126
           L+FS ITHHASVTQCLGSIGG+VWYLGVAKPSI+DS E + D+G  +V+S  GHFYVPPA
Sbjct: 62  LEFSNITHHASVTQCLGSIGGNVWYLGVAKPSIVDSNEIKDDLGKTVVKSRSGHFYVPPA 121

Query: 127 IEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK-NGVV 185
           IEDV+VFK++G KFLKLNRGTWHAGPLFK+D MDFYNLELSNTNVVDHTTH+FKK NGV 
Sbjct: 122 IEDVQVFKVSGSKFLKLNRGTWHAGPLFKSDTMDFYNLELSNTNVVDHTTHNFKKDNGVT 181

Query: 186 YTIDD 190
           +TI++
Sbjct: 182 FTINE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449156|ref|XP_002278214.1| PREDICTED: uncharacterized protein LOC100263359 [Vitis vinifera] gi|296086072|emb|CBI31513.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 158/179 (88%), Gaps = 1/179 (0%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTI 72
           +KL  IEAT E+FKE+GQVI  S DGE+FGPQDAQLDLSRGIPRFY+MHLE++PLKFS+I
Sbjct: 14  LKLTPIEATPETFKEFGQVIGVSPDGEKFGPQDAQLDLSRGIPRFYIMHLEDQPLKFSSI 73

Query: 73  THHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRV 132
           THHASVTQCLGSIGGHVWYLGVAKPSIL+  E  GD G NIV+S  GHFYVPPA+EDVR+
Sbjct: 74  THHASVTQCLGSIGGHVWYLGVAKPSILEPDEINGDAGMNIVKSRRGHFYVPPAVEDVRI 133

Query: 133 FKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSF-KKNGVVYTIDD 190
           F+I+GPKFLKLN GTWHAGPLFKAD MDFYNLELS+TNVVDHTTH F + NGV+  ID+
Sbjct: 134 FRISGPKFLKLNHGTWHAGPLFKADTMDFYNLELSDTNVVDHTTHDFLRANGVLILIDE 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497408|gb|AFK36770.1| unknown [Lotus japonicus]

 Score =  295 bits (755), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 157/184 (85%), Gaps = 1/184 (0%)

Query: 8   EEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPL 67
           EE   +KL+ IEAT  +FK+YGQVI+AS DG  FGP DAQLDL+RGIPRFY+MHLENRPL
Sbjct: 2   EEPKLLKLKPIEATPATFKDYGQVIQASPDGHGFGPHDAQLDLTRGIPRFYIMHLENRPL 61

Query: 68  KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAI 127
           KFS ITHHASVTQCLGSIGGH WYLGVAKPSI+DS+E + D    +V+S  GH YVPPAI
Sbjct: 62  KFSNITHHASVTQCLGSIGGHAWYLGVAKPSIVDSSEIKDDTDRKVVQSRSGHLYVPPAI 121

Query: 128 EDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK-NGVVY 186
           ED+ VFK+ G KFLKLNRGTWHAGP+FKAD MDFYNLELSNTN +DHTTH+FKK NGV++
Sbjct: 122 EDIHVFKVTGSKFLKLNRGTWHAGPIFKADSMDFYNLELSNTNEIDHTTHNFKKDNGVIF 181

Query: 187 TIDD 190
           +ID+
Sbjct: 182 SIDE 185

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724593|ref|NP_001236807.1| uncharacterized protein LOC100526980 [Glycine max] gi|255631298|gb|ACU16016.1| unknown [Glycine max]

 Score =  288 bits (737), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 136/179 (75%), Positives = 154/179 (86%), Gaps = 1/179 (0%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTI 72
           V L+AIEAT  +FK+YGQVIEAS DG+EFG  DAQLDLS+G PRFY+MH+ENRPLKFS+I
Sbjct: 7   VTLKAIEATPSTFKDYGQVIEASPDGQEFGSHDAQLDLSQGTPRFYIMHIENRPLKFSSI 66

Query: 73  THHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRV 132
           THHASVTQCLGSIGGHVWYLGVAK SI+DS E +      IV+S  GH YVPPAIEDV+V
Sbjct: 67  THHASVTQCLGSIGGHVWYLGVAKSSIVDSNEIKDGTSKKIVQSPSGHSYVPPAIEDVQV 126

Query: 133 FKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK-NGVVYTIDD 190
           FK+AG KFLKLNRGTWHAGPLFKA  +DFYNLELSNTNV+DHTTHSF+  NGVV+ ID+
Sbjct: 127 FKVAGSKFLKLNRGTWHAGPLFKAAAIDFYNLELSNTNVIDHTTHSFENDNGVVFLIDE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|129594025|gb|ABO31123.1| putative ureidoglycolate hydrolase [Phaseolus vulgaris]

 Score =  288 bits (737), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 134/184 (72%), Positives = 156/184 (84%), Gaps = 1/184 (0%)

Query: 8   EEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPL 67
           E    V L+A+EAT  +FK+YGQVIEAS DG+EFG  DAQLDL+ G PRFY+MH+ENRPL
Sbjct: 2   ETTKVVTLKAMEATPLTFKDYGQVIEASPDGQEFGLHDAQLDLTHGTPRFYIMHIENRPL 61

Query: 68  KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAI 127
           KFS+ITHHA+VTQCLGS+GGH WYLGVAK SI+DS E + D G  IV+S CGH YVPP I
Sbjct: 62  KFSSITHHANVTQCLGSVGGHAWYLGVAKSSIVDSNEIKDDTGKKIVQSRCGHSYVPPDI 121

Query: 128 EDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK-NGVVY 186
           ++V+VFK+AG KFLKL+RGTWHAGPLFKAD MDFYNLELSNTNV+DHT HSFKK NGVV+
Sbjct: 122 DEVQVFKVAGSKFLKLDRGTWHAGPLFKADAMDFYNLELSNTNVIDHTQHSFKKDNGVVF 181

Query: 187 TIDD 190
            ID+
Sbjct: 182 LIDE 185

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819145|emb|CAN78082.1| hypothetical protein VITISV_021301 [Vitis vinifera]

 Score =  284 bits (727), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 145/160 (90%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTI 72
           +KL  IEAT E+FKE+GQVI  S DGE+FGPQDAQLDLSRGIPRFY+MHLE++PLKFS+I
Sbjct: 14  LKLTPIEATPETFKEFGQVIGVSPDGEKFGPQDAQLDLSRGIPRFYIMHLEDQPLKFSSI 73

Query: 73  THHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRV 132
           THHASVTQCLGSIGGHVWYLGVAKPSILD  E  GD G NIV+S  GHFY+PPA+EDVR+
Sbjct: 74  THHASVTQCLGSIGGHVWYLGVAKPSILDPDEINGDAGMNIVKSRRGHFYMPPAVEDVRI 133

Query: 133 FKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVV 172
           F+I+GPKFLKLNRGTWHAGPLFKAD MDFYNLELS+TN++
Sbjct: 134 FRISGPKFLKLNRGTWHAGPLFKADTMDFYNLELSDTNLI 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226490954|ref|NP_001145559.1| uncharacterized protein LOC100279019 [Zea mays] gi|223975745|gb|ACN32060.1| unknown [Zea mays] gi|414879855|tpg|DAA56986.1| TPA: hypothetical protein ZEAMMB73_252388 [Zea mays]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/191 (68%), Positives = 159/191 (83%), Gaps = 2/191 (1%)

Query: 2   VKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMH 61
            +ME+++E   VKLRA+EAT ESF  +GQVI AS DG+EFGP DAQLDLSRGIPRFY+M 
Sbjct: 54  AQMERRQEAKVVKLRAVEATPESFASFGQVIGASPDGDEFGPHDAQLDLSRGIPRFYIMR 113

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILD-STETEGDMGTNIVRSHCGH 120
           L+NRPLKFSTITHHASVTQCLGS+GG  WYLGVAKPSI+D ++E  G  G   ++S  GH
Sbjct: 114 LQNRPLKFSTITHHASVTQCLGSVGGQDWYLGVAKPSIVDGASEQSGPEGRKFLQSAAGH 173

Query: 121 FYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFK 180
           +Y+PP   +V VF+++GPKFLKLN+GTWHAGPLFKAD +DFYNLELSNTNVVDHTTH FK
Sbjct: 174 YYLPPDPAEVCVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFK 233

Query: 181 K-NGVVYTIDD 190
           K +G+ + ++D
Sbjct: 234 KHDGITFVVED 244

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195643516|gb|ACG41226.1| hypothetical protein [Zea mays] gi|195658017|gb|ACG48476.1| hypothetical protein [Zea mays]

 Score =  282 bits (721), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 158/189 (83%), Gaps = 2/189 (1%)

Query: 4   MEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLE 63
           ME+++E   VKLRA+EAT ESF  +GQVI AS DG+EFGP DAQLDLSRGIPRFY+M L+
Sbjct: 1   MERRQEAKVVKLRAVEATPESFASFGQVIGASPDGDEFGPHDAQLDLSRGIPRFYIMRLQ 60

Query: 64  NRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILD-STETEGDMGTNIVRSHCGHFY 122
           NRPLKFSTITHHASVTQCLGS+GG  WYLGVAKPSI+D ++E  G  G   ++S  GH+Y
Sbjct: 61  NRPLKFSTITHHASVTQCLGSVGGQDWYLGVAKPSIVDGASEQSGPEGRKFLQSAAGHYY 120

Query: 123 VPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK- 181
           +PP   +V VF+++GPKFLKLN+GTWHAGPLFKAD +DFYNLELSNTNVVDHTTH FKK 
Sbjct: 121 LPPDPAEVCVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKH 180

Query: 182 NGVVYTIDD 190
           +G+ + ++D
Sbjct: 181 DGITFVVED 189

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723905|ref|NP_001237295.1| uncharacterized protein LOC100306085 [Glycine max] gi|255627489|gb|ACU14089.1| unknown [Glycine max]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 150/179 (83%), Gaps = 1/179 (0%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTI 72
           V L+AIEAT  +FKE+GQV+EAS DG+EFGP DAQLDLS+G PRFY++ LE  PLKFS+I
Sbjct: 9   VTLKAIEATPSTFKEFGQVVEASRDGQEFGPHDAQLDLSQGTPRFYIIKLEKCPLKFSSI 68

Query: 73  THHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRV 132
           THHA VTQCLGSIGGHVWYLGVAK S++DS E + D G  IV+S  GH YVPPAIEDV+V
Sbjct: 69  THHAIVTQCLGSIGGHVWYLGVAKSSVVDSNEIKDDTGKKIVQSRSGHSYVPPAIEDVQV 128

Query: 133 FKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK-NGVVYTIDD 190
           FKI+G KFLK NRGTWHAGPLFKA  MDFYNLELSNTN  DHTTH FKK +GV++ IDD
Sbjct: 129 FKISGSKFLKPNRGTWHAGPLFKAAAMDFYNLELSNTNETDHTTHYFKKDDGVMFVIDD 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242054885|ref|XP_002456588.1| hypothetical protein SORBIDRAFT_03g038920 [Sorghum bicolor] gi|241928563|gb|EES01708.1| hypothetical protein SORBIDRAFT_03g038920 [Sorghum bicolor]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 157/191 (82%), Gaps = 2/191 (1%)

Query: 2   VKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMH 61
            +ME++ EV  VKLRA+EAT ESF  +GQVI AS DG+EFGP DAQLDLS GIPRFY+M 
Sbjct: 89  AQMERKGEVKVVKLRAVEATPESFAPFGQVITASPDGDEFGPHDAQLDLSSGIPRFYIMR 148

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILD-STETEGDMGTNIVRSHCGH 120
           L++RPL+FSTITHHASVTQCLG+IGG  WYLGVAKPSI+D ++E  G  G  +++S  GH
Sbjct: 149 LQDRPLEFSTITHHASVTQCLGAIGGQDWYLGVAKPSIVDGASEQSGPEGRKLLQSAAGH 208

Query: 121 FYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFK 180
            Y+PP   +V VF+++G KFLKLN+GTWHAGPLFKAD +DFYNLELSNTNVVDHTTH FK
Sbjct: 209 CYLPPDPAEVCVFRVSGSKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHYFK 268

Query: 181 K-NGVVYTIDD 190
           K +G+ + ++D
Sbjct: 269 KHDGITFVVED 279

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2039190	192	AT2G35820 [Arabidopsis thalian	0.931	0.921	0.644	3.4e-61
TAIR|locus:2039205	199	AT2G35810 "AT2G35810" [Arabido	0.978	0.934	0.6	5.7e-59

TAIR|locus:2039190 AT2G35820 [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 116/180 (64%), Positives = 140/180 (77%)

Query:    11 VTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFS 70
             V VKL  IEAT E+F +YGQVIEAS DG  FGP DAQLDLSRGIPRFY+M + + P  FS
Sbjct:     6 VEVKLIPIEATPENFADYGQVIEASRDGAGFGPNDAQLDLSRGIPRFYIMRIRDTPFDFS 65

Query:    71 TITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDV 130
              +THHASVTQCLGSIGGHVWYLGVAKP++++  + +G M  + ++S  GH Y PPA+E++
Sbjct:    66 VLTHHASVTQCLGSIGGHVWYLGVAKPTLIEDGD-DGKM-VDKLKSRSGHLYAPPAVEEI 123

Query:   131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKKN-GVVYTID 189
             RVF+++GPKF+KLN GTWH GPLF    MDFYNLELSNTN VD TT+ F KN GV   +D
Sbjct:   124 RVFRVSGPKFIKLNHGTWHVGPLFSDSYMDFYNLELSNTNAVDRTTYDFIKNKGVTIRVD 183

GO:0000256 "allantoin catabolic process" evidence=IEA

GO:0004848 "ureidoglycolate hydrolase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2039205 AT2G35810 "AT2G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 114/190 (60%), Positives = 140/190 (73%)

Query:     2 VKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMH 61
             VK    +  V V L  IEAT E+F EYGQVIEAS DG  +GP DAQLDLS+GIPR Y++ 
Sbjct:    11 VKSTMAKSPVEVNLIPIEATPETFAEYGQVIEASRDGAGYGPNDAQLDLSKGIPRLYILR 70

Query:    62 LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
             L+  PL F  ITHHA VTQCLGSIGG +WY+GVAKPS+++  +    + T  V++  GH 
Sbjct:    71 LKETPLGFFKITHHAKVTQCLGSIGGDIWYMGVAKPSLIEDDDDGRRVDT--VKAKSGHL 128

Query:   122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADD-MDFYNLELSNTNVVDHTTHSF- 179
             Y+PP +E++RVF+ +GPKF+KL+RGTWHAGPLF     MDFYNLELSNTNVVDHT+H F 
Sbjct:   129 YIPPEVEEIRVFRFSGPKFVKLHRGTWHAGPLFSGSSIMDFYNLELSNTNVVDHTSHDFT 188

Query:   180 KKNGVVYTID 189
             K NGV +  D
Sbjct:   189 KNNGVSFRFD 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       190   0.00091  110 3  11 22  0.46    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.03u 0.14s 17.17t   Elapsed:  00:00:01
  Total cpu time:  17.03u 0.14s 17.17t   Elapsed:  00:00:01
  Start:  Sat May 11 05:26:44 2013   End:  Sat May 11 05:26:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PF04115	165	Ureidogly_hydro: Ureidoglycolate hydrolase ; Inter	100.0
PRK03606	162	ureidoglycolate hydrolase; Provisional	100.0
PRK13395	171	ureidoglycolate hydrolase; Provisional	100.0
COG3194	168	DAL3 Ureidoglycolate hydrolase [Nucleotide transpo	100.0
COG3822	225	ABC-type sugar transport system, auxiliary compone	86.92

>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3

Probab=100.00  E-value=1.7e-44  Score=294.46  Aligned_cols=146  Identities=25%  Similarity=0.353  Sum_probs=111.1

Q ss_pred             eceEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccC---CCeeeEEEEEecC--CCceeeeeccCCCC
Q 029632           12 TVKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLS---RGIPRFYVMHLEN--RPLKFSTITHHASV   78 (190)
Q Consensus        12 ~~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~---~g~p~~~i~~~~~--~p~~v~~lERHp~t   78 (190)
                      |++|+++|||+|||||||+||+..+       +|...+ +..+.++..   .|++++++++++.  .|++|++|||||++
T Consensus         1 m~~i~~~pLT~eaFaPyG~vi~~~~~~~~~~n~g~a~r~~~~~~~~~~~~~~~~~~~si~~~~~~~~p~~v~~lERHp~t   80 (165)
T PF04115_consen    1 MKTIKAEPLTPEAFAPYGDVIELDDAEPFPINQGTAERFHDLAPLDFSGGEGGRPGISIFRAQPRELPFEVSMLERHPLT   80 (165)
T ss_dssp             -EEEEEEE--HHHHTTTEEEE-STT--EEEETTTTEEEEEEEEEE-BSS-TTSCEEEEEEEEEBE-SSEEEEEEEE-TTB
T ss_pred             CceeeeeECCHHHhccceeEEccCCCCceeccCCcceEEeccceeecccCCCCcEEEEEEEeeccCCccccceeccCCCe
Confidence            5689999999999999999999842       244333 345566653   4788999998754  67999999999999


Q ss_pred             eeeeeeecCce-EEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCC
Q 029632           79 TQCLGSIGGHV-WYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKAD  157 (190)
Q Consensus        79 sQ~FiPl~~~~-~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~  157 (190)
                      ||+|+||++.+ |||+||+++..                        ||++++|||+++++|||+|++||||++++++++
T Consensus        81 sQ~fiPl~~~~~~lvvVA~~~~~------------------------Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~  136 (165)
T PF04115_consen   81 SQAFIPLDGSPWYLVVVAPDDDG------------------------PDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDE  136 (165)
T ss_dssp             -EEEEESBS---EEEEEEESSSS-------------------------ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSS
T ss_pred             eEEEEECCCCccEEEEEcCCCCC------------------------CCccceEEEEEcCCEEEEECCCceeCCccccCC
Confidence            99999999999 99999986632                        999999999999999999999999999999999


Q ss_pred             cccEEEEEecCCcccccceeeeec
Q 029632          158 DMDFYNLELSNTNVVDHTTHSFKK  181 (190)
Q Consensus       158 ~~dF~vle~~~~~~~d~~~~~~~~  181 (190)
                      +++|+++++.+|+..||+.+.|.+
T Consensus       137 ~~~f~vv~~~~~~~~dce~~~~~~  160 (165)
T PF04115_consen  137 PADFLVVDRIDGPGDDCEEVELDE  160 (165)
T ss_dssp             EEEEEEEEEESSTS-T-EEEEEEG
T ss_pred             cceEEEEeCCcCCCCCcEEEeCCC
Confidence            999999999999999999999987

5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.

>PRK03606 ureidoglycolate hydrolase; Provisional

Probab=100.00  E-value=1.2e-43  Score=289.68  Aligned_cols=143  Identities=22%  Similarity=0.321  Sum_probs=123.4

Q ss_pred             ceEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccC--CCeeeEEEEEecCC--CceeeeeccCCCCee
Q 029632           13 VKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLS--RGIPRFYVMHLENR--PLKFSTITHHASVTQ   80 (190)
Q Consensus        13 ~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~--~g~p~~~i~~~~~~--p~~v~~lERHp~tsQ   80 (190)
                      .+|+++|||+|||||||+||+.++       +|...+ ++.|+++..  +|+++++++|++.+  |+++++|||||++||
T Consensus         2 ~~l~~~pLT~eaFaPfG~VI~~~~~~~~~iN~G~~~r~~~la~~~~~~~~g~~~isifr~~~~~~p~~~~~mERHp~~sQ   81 (162)
T PRK03606          2 RTLQIEPLTKEAFAPFGDVIETDGADFFHINNGTTERYHDLARVEVAGEGGRALISIFRAQPRALPLEIRMLERHPLGSQ   81 (162)
T ss_pred             CceeeeECCHHHcCccccEEccCCCCceeccCcceeEeecceeccccCCCCceEEEEEeCcccCCCcceeeEEeCCCceE
Confidence            469999999999999999999862       244444 456778765  46899999999765  899999999999999


Q ss_pred             eeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCccc
Q 029632           81 CLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMD  160 (190)
Q Consensus        81 ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~d  160 (190)
                      ||+||++.+|||+||+++.                         ++++++|||+++|+|||+|++||||++++.++.+.|
T Consensus        82 afiPl~~~~~lvvVA~~~~-------------------------~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~d  136 (162)
T PRK03606         82 AFIPLNGRPFLVVVAPDGD-------------------------GDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSD  136 (162)
T ss_pred             EEEECCCCEEEEEEeCCCC-------------------------CCccceEEEEecCCcEEEeCCCcccccccccCCCce
Confidence            9999999999999998864                         366899999999999999999999986677777999


Q ss_pred             EEEEEecCCcccccceeeeec
Q 029632          161 FYNLELSNTNVVDHTTHSFKK  181 (190)
Q Consensus       161 F~vle~~~~~~~d~~~~~~~~  181 (190)
                      |+|+++ ++.+.||+.+.|.+
T Consensus       137 F~vvdr-~g~g~ncee~~~~~  156 (162)
T PRK03606        137 FLVVDR-GGPGDNLEEHFFPE  156 (162)
T ss_pred             EEEEeC-CcCCCCceEEECCC
Confidence            999996 66899999999876

>PRK13395 ureidoglycolate hydrolase; Provisional

Probab=100.00  E-value=2.7e-42  Score=283.84  Aligned_cols=143  Identities=21%  Similarity=0.296  Sum_probs=118.5

Q ss_pred             ceEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccC--CCeeeEEEEEecCC--CceeeeeccCCCCee
Q 029632           13 VKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLS--RGIPRFYVMHLENR--PLKFSTITHHASVTQ   80 (190)
Q Consensus        13 ~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~--~g~p~~~i~~~~~~--p~~v~~lERHp~tsQ   80 (190)
                      .+|+++|||+|||||||+||+.+.       +|...+ ++.++++..  .|++++++||++.+  |+++++|||||++||
T Consensus         2 ~~i~~~pLT~eaFaPfG~VI~~~~~~~~~iN~G~~~r~h~la~~d~~~~~g~~~isifr~~p~~~p~~i~~mERHp~~sQ   81 (171)
T PRK13395          2 KTLRAERLTREAFAPFGDVIELDGARHFPINGGTTERFHDLATIDVTGDGGRPLVSLFRAQPRALPVAITMMERHPLGSQ   81 (171)
T ss_pred             CceeeeECCHHHcCccceeEecCCCCcceecCcceEEeccceeeeccCCCCceEEEEEeccccCCCcceeeEEECCCceE
Confidence            469999999999999999999762       133332 466777764  46899999998765  899999999999999


Q ss_pred             eeeeecC-ceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCcc
Q 029632           81 CLGSIGG-HVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDM  159 (190)
Q Consensus        81 ~FiPl~~-~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~  159 (190)
                      ||+||++ .+|+||||+++ +                        ++++++|||+++|+|||+|++||||+++++++.+.
T Consensus        82 afiPl~~~~~~lvVvap~~-~------------------------~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~  136 (171)
T PRK13395         82 AFIPLAAVSRYAVVVAPAG-E------------------------FRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVS  136 (171)
T ss_pred             EEEECCCCCCEEEEEccCC-C------------------------CCCCceEEEEecCCcEEEeCCCcccccccccCCCc
Confidence            9999999 66666666533 2                        34457999999999999999999999888888899


Q ss_pred             cEEEEEecCCcccccceeeeec
Q 029632          160 DFYNLELSNTNVVDHTTHSFKK  181 (190)
Q Consensus       160 dF~vle~~~~~~~d~~~~~~~~  181 (190)
                      ||+|+++ ++.+.||+.+.|.+
T Consensus       137 dF~vvdr-~g~~~nc~e~~~~~  157 (171)
T PRK13395        137 DFVVVDR-GGPQPNCDEIPLDT  157 (171)
T ss_pred             cEEEEeC-CcCCCCceEEECCC
Confidence            9999985 56899999999976

>COG3194 DAL3 Ureidoglycolate hydrolase [Nucleotide transport and metabolism]

Probab=100.00  E-value=2.3e-42  Score=280.71  Aligned_cols=145  Identities=20%  Similarity=0.260  Sum_probs=119.5

Q ss_pred             eceEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccCC--CeeeEEEEEecC--CCceeeeeccCCCCe
Q 029632           12 TVKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLSR--GIPRFYVMHLEN--RPLKFSTITHHASVT   79 (190)
Q Consensus        12 ~~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~~--g~p~~~i~~~~~--~p~~v~~lERHp~ts   79 (190)
                      +.+|+++|||+|||||||+||+..+       .|+..+ ++.++++.+.  .++.+.++|++.  .|+.|++|||||++|
T Consensus         1 m~~l~~~pLT~EaFapfGdVIe~~~~~~~~iN~G~~~ryh~la~vE~~g~~~r~linifr~~p~~~p~~I~~lERHP~gS   80 (168)
T COG3194           1 MKTLTARPLTKEAFAPFGDVIETDQAKMFHINGGTAERYHDLARVEAAGEDARTLINIFRAQPAVHPLTISMLERHPLGS   80 (168)
T ss_pred             CceeeeeccchhhhccccccccccccceeeecCchhhhhhhhhhhhhcCCCcceEEEEeecccCcCCceeeEEeecCCcc
Confidence            3589999999999999999999763       244444 3445554432  367788888765  588999999999999


Q ss_pred             eeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCcc
Q 029632           80 QCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDM  159 (190)
Q Consensus        80 Q~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~  159 (190)
                      |+|+||++.+||||||+.+..                        ||++++|||++.|+|||||++|||||+++.+....
T Consensus        81 QaFiPl~~~~fLVVVA~~~~~------------------------pd~~~~rAF~a~g~QgVnY~rnvWH~pl~~l~~~~  136 (168)
T COG3194          81 QAFIPLSGRPFLVVVAPDGGK------------------------PDPSTPRAFIANGRQGVNYHRNVWHHPLTPLGKVT  136 (168)
T ss_pred             eeeeecCCCeEEEEEEcCCCC------------------------CCCCceeEEEecCccceeeccceeccceecccccc
Confidence            999999999999999988632                        89999999999999999999999998777777799


Q ss_pred             cEEEEEecCCcccccceeeeec
Q 029632          160 DFYNLELSNTNVVDHTTHSFKK  181 (190)
Q Consensus       160 dF~vle~~~~~~~d~~~~~~~~  181 (190)
                      ||+++++. +.+.|.+.+.+.+
T Consensus       137 dF~vvdr~-G~g~n~ee~~~~e  157 (168)
T COG3194         137 DFLVVDRE-GSGNNLEEYFFEE  157 (168)
T ss_pred             eEEEEEec-CCCCCcccccccc
Confidence            99999998 7677776665554

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=86.92  E-value=2.8  Score=36.11  Aligned_cols=102  Identities=17%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             CceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecC
Q 029632           66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNR  145 (190)
Q Consensus        66 p~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~  145 (190)
                      +=.++-|-||+.-..=++--++..+++=.-..+.++ .+++.+.-  +| +.-|--   -....=--.+..|||.|++-+
T Consensus        95 ~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~-~~~~ks~v--tv-~~dg~r---~~~~ag~~lkL~PGesitL~P  167 (225)
T COG3822          95 PGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVE-GQDEKSDV--TV-PVDGCR---QTHTAGSQLKLSPGESITLPP  167 (225)
T ss_pred             cCCcCcccccccchhhhhhcCCceEEEEEecccccc-CcCCCCCe--Ee-cCCCcE---EEeccceeEEECCCCcEecCC
Confidence            335677899998777777777777655554443321 23333221  11 111100   001111235689999999999


Q ss_pred             CCCCCCcccCCCcccEEEEEecCCccccccee
Q 029632          146 GTWHAGPLFKADDMDFYNLELSNTNVVDHTTH  177 (190)
Q Consensus       146 GtWHa~pl~~~~~~dF~vle~~~~~~~d~~~~  177 (190)
                      |+||+   +-.+..+-++-|-+..|..+|+.+
T Consensus       168 g~~Hs---Fwae~g~vlvgEvSsvndD~hDn~  196 (225)
T COG3822         168 GLYHS---FWAEEGGVLVGEVSSVNDDLHDNI  196 (225)
T ss_pred             Cceee---eeecCCcEEEEEEeeccCccccch
Confidence            99996   334445567779999998888854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2bdr_A	175	Ureidoglycolate hydrolase; all beta protein, struc	4e-18
1xsq_A	168	Ureidoglycolate hydrolase; northeast structural ge	2e-15

>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural genomics, PSI, protein structur initiative, northeast structural genomics consortium; 1.60A {Pseudomonas putida} SCOP: b.82.1.14 Length = 175

 Score = 76.7 bits (188), Expect = 4e-18
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 37/184 (20%)

Query: 14  KLRAIEATAESFKEYGQVIEASADGEEFGPQ--------DAQLDLS----RGIPRFYVMH 61
            L     T E+F ++G VIE                    A ++ +    + I   +   
Sbjct: 3   TLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRAD 62

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
            ++ PL    +  H   +Q    + G+ + + VA                          
Sbjct: 63  AQDMPLTVRMLERHPLGSQAFIPLLGNPFLIVVAPVGD---------------------- 100

Query: 122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK 181
              P    VR F+  G + +  +RG WH   L      DF  ++ S +   +   H F +
Sbjct: 101 --APVSGLVRAFRSNGRQGVNYHRGVWHHPVLTIEKRDDFLVVDRSGSG-NNCDEHYFTE 157

Query: 182 NGVV 185
             ++
Sbjct: 158 EQML 161

>1xsq_A Ureidoglycolate hydrolase; northeast structural genomics consortium, NESG, structural genomics, protein structure initiative, PSI, ET81, X-RAY; 1.60A {Escherichia coli} SCOP: b.82.1.14 PDB: 1xsr_A 1yqc_A Length = 168

 Score = 69.5 bits (169), Expect = 2e-15
 Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 37/189 (19%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQD--------AQLDLSRG---IPRFYVMH 61
           +KL+ +  + E+F  YG VIE                    A +++      +       
Sbjct: 1   MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQ 60

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
             N PL    +  H   TQ    + G V+ + VA                          
Sbjct: 61  PANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDD---------------------- 98

Query: 122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK 181
              P +  +R F   G + +  +R  WH          DF  ++   ++  +    S  +
Sbjct: 99  --KPDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSD--NCDVESIPE 154

Query: 182 NGVVYTIDD 190
             + + ++ 
Sbjct: 155 QELCFALEH 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
1xsq_A	168	Ureidoglycolate hydrolase; northeast structural ge	100.0
2bdr_A	175	Ureidoglycolate hydrolase; all beta protein, struc	100.0
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	94.54
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	89.74
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	84.91

>1xsq_A Ureidoglycolate hydrolase; northeast structural genomics consortium, NESG, structural genomics, protein structure initiative, PSI, ET81, X-RAY; 1.60A {Escherichia coli} SCOP: b.82.1.14 PDB: 1xsr_A 1yqc_A

Probab=100.00  E-value=6.7e-45  Score=297.23  Aligned_cols=142  Identities=21%  Similarity=0.321  Sum_probs=121.4

Q ss_pred             eEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccCCC-eeeEEEEEecCC--CceeeeeccCCCCeeee
Q 029632           14 KLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLSRG-IPRFYVMHLENR--PLKFSTITHHASVTQCL   82 (190)
Q Consensus        14 ~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~~g-~p~~~i~~~~~~--p~~v~~lERHp~tsQ~F   82 (190)
                      +|+++|||+|||||||+||+.++       +|...+ +++|++++.++ ++++++|+++.+  |++|++|||||++||||
T Consensus         2 ~l~~~pLT~eaFapfG~vI~~~~~~~~~~N~G~~~r~~~~a~ld~~~~~~~~i~ifr~~~r~~p~~v~~lERHp~~sQaf   81 (168)
T 1xsq_A            2 KLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQPANLPLTIHELERHPLGTQAF   81 (168)
T ss_dssp             EEEEEECCHHHHTTTEEEECCTTCCCEEC----CEEEEEEEEECBSSCSCEEEEEEEECBCCSSCEEEEEEECTTBCEEE
T ss_pred             ceeeeECCHHHcCCceeEEccCCCCcccccCCcceEeccceeEecCCCCceEEEEEEecCCCCCceeeEEeeCCCCceEE
Confidence            68999999999999999999763       233333 46788888764 899999999988  99999999999999999


Q ss_pred             eeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCcccEE
Q 029632           83 GSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFY  162 (190)
Q Consensus        83 iPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~  162 (190)
                      +||++.+|||+||+++..                        ||++++|||+++|+|||||++||||++++.+.+.+||+
T Consensus        82 iPl~~~~~lVvVA~~~~~------------------------Pd~~~lrAF~~~ggqgV~y~~GtWH~pl~~l~~~~~F~  137 (168)
T 1xsq_A           82 IPMKGEVFVVVVALGDDK------------------------PDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFL  137 (168)
T ss_dssp             EESBCCCCEEEEEECSSS------------------------CEEEEEEEEECCSSCEEEECTTCEECCCCBSSSCEEEE
T ss_pred             EECCCCEEEEEEeCCCCC------------------------CChhheEEEEecCCeEEEeCCCceecccccCCCcceEE
Confidence            999999999999977432                        99999999999999999999999999666666789999


Q ss_pred             EEEecCCcccccceeeeec
Q 029632          163 NLELSNTNVVDHTTHSFKK  181 (190)
Q Consensus       163 vle~~~~~~~d~~~~~~~~  181 (190)
                      ++++.+. . ||+.+.|.+
T Consensus       138 vvdr~g~-~-dc~e~~~~~  154 (168)
T 1xsq_A          138 TIDRGGS-D-NCDVESIPE  154 (168)
T ss_dssp             EEECC---C-CCEEEEEEE
T ss_pred             EEeccCC-C-CcEEEECCC
Confidence            9997655 4 999999877

>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural genomics, PSI, protein structur initiative, northeast structural genomics consortium; 1.60A {Pseudomonas putida} SCOP: b.82.1.14

Probab=100.00  E-value=1.5e-44  Score=296.89  Aligned_cols=144  Identities=22%  Similarity=0.327  Sum_probs=122.6

Q ss_pred             ceEEEeeCChhhccCCcceEeeCCC-------CCccC-ccccccccCCC--eeeEEEEEecC--CCceeeeeccCCCCee
Q 029632           13 VKLRAIEATAESFKEYGQVIEASAD-------GEEFG-PQDAQLDLSRG--IPRFYVMHLEN--RPLKFSTITHHASVTQ   80 (190)
Q Consensus        13 ~~I~a~pLT~eaFAPfG~VI~~~~~-------g~~~~-~~~a~l~~~~g--~p~~~i~~~~~--~p~~v~~lERHp~tsQ   80 (190)
                      ++|+++|||+|||||||+||+.++.       |...+ +++|++++.++  ++.+++|+++.  +|++|++|||||++||
T Consensus         2 ~~l~~~pLT~eaFaPfG~VI~~~~~~~~~~N~G~~~r~~~~a~ld~~~~~~r~~isifr~~~r~~p~~v~~lERHp~~sQ   81 (175)
T 2bdr_A            2 RTLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRADAQDMPLTVRMLERHPLGSQ   81 (175)
T ss_dssp             EECCEEECCHHHHTTTEEEECSTTCCCEEEGGGTEEEEEEEEEECBSSTTCEEEEEEEEEECCCSSEEECEEEECTTBCE
T ss_pred             CceeeeECCHHHhCCcceEEccCCCCcccccCcceeEecccceEEecCCCcccEEEEEEccccCCCceeeEEeeCCCCce
Confidence            4699999999999999999997622       33222 45788887654  67799999954  5999999999999999


Q ss_pred             eeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCccc
Q 029632           81 CLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMD  160 (190)
Q Consensus        81 ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~d  160 (190)
                      ||+||++.+|||+||++++    .                    ||++++|||+++|+|||||++||||++++.+.+.+|
T Consensus        82 afiPl~~~~~lVvVAp~~~----~--------------------Pd~~~lrAF~~~ggqgV~y~~GtWH~pl~~l~~~~d  137 (175)
T 2bdr_A           82 AFIPLLGNPFLIVVAPVGD----A--------------------PVSGLVRAFRSNGRQGVNYHRGVWHHPVLTIEKRDD  137 (175)
T ss_dssp             EEEESSCCCEEEEEECSSS----S--------------------CCGGGCEEEEECSSCEEEECTTCEECSCEESSSEEE
T ss_pred             EEEECCCCEEEEEEeCCCC----C--------------------CCccceEEEEeCCCeEEEeCCCceecccccCCCCce
Confidence            9999999999999996432    2                    999999999999999999999999976666666999


Q ss_pred             EEEEEecCCcccccceeeeec
Q 029632          161 FYNLELSNTNVVDHTTHSFKK  181 (190)
Q Consensus       161 F~vle~~~~~~~d~~~~~~~~  181 (190)
                      |+|+++.+. +.||+.+.|.+
T Consensus       138 F~vvdr~g~-~~dc~e~~~~~  157 (175)
T 2bdr_A          138 FLVVDRSGS-GNNCDEHYFTE  157 (175)
T ss_dssp             EEEEEEECS-SCCCEEEECCG
T ss_pred             EEEEEcCCC-CCCCEEEECCC
Confidence            999999864 69999999976

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=94.54  E-value=0.081  Score=41.68  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             CceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecC
Q 029632           66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNR  145 (190)
Q Consensus        66 p~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~  145 (190)
                      .=.++.|++|+-+-..|+-+.+.- .+..+..+.                          +....++....+|+..+..+
T Consensus        38 ~~~i~~~h~H~~tDE~Fivl~G~l-~i~~rd~~~--------------------------~~~~d~~V~l~~Ge~yvVPk   90 (140)
T 3d0j_A           38 IEGIAHLEIHHSTDEQFILSAGKA-ILITAEKEN--------------------------DKFNIELTLMEKGKVYNVPA   90 (140)
T ss_dssp             TTTCCEEEEESSCCEEEEEEESCE-EEEEEEEET--------------------------TEEEEEEEECCTTCCEEECT
T ss_pred             cccCHhhccCCCCCeEEEEEecEE-EEEEecCcC--------------------------CCCccceEEecCCCEEEeCC
Confidence            346889999999999999998764 455553211                          12456889999999999999


Q ss_pred             CCCCCCcccCCCcccEEEEEecCCcccccc
Q 029632          146 GTWHAGPLFKADDMDFYNLELSNTNVVDHT  175 (190)
Q Consensus       146 GtWHa~pl~~~~~~dF~vle~~~~~~~d~~  175 (190)
                      |||| -|.+. +.+..+.+|-++|-..+-+
T Consensus        91 GveH-~p~a~-~e~~vLLiEp~nTGd~~se  118 (140)
T 3d0j_A           91 ECWF-YSITQ-KDTKMMYVQDSNCSMDNSD  118 (140)
T ss_dssp             TCEE-EEEEC-TTCEEEEEEESCCCGGGEE
T ss_pred             CccC-cccCC-CceEEEEEEeCCCCCCCCc
Confidence            9999 46664 4678899999877555543

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=89.74  E-value=0.6  Score=36.26  Aligned_cols=69  Identities=13%  Similarity=0.056  Sum_probs=44.8

Q ss_pred             eeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCC
Q 029632           68 KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGT  147 (190)
Q Consensus        68 ~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~Gt  147 (190)
                      .++--=||....|.|+.+.+.- -|++  .+.    .                    .   .-+.++-.+.+|+.+-+|+
T Consensus        46 ~~RG~H~Hk~~~q~li~l~Gs~-~v~l--dDg----~--------------------~---~~~~~L~~~~~gL~Ippgv   95 (141)
T 2pa7_A           46 EPRGFHAHKKLEQVLVCLNGSC-RVIL--DDG----N--------------------I---IQEITLDSPAVGLYVGPAV   95 (141)
T ss_dssp             CCEEEEEESSCCEEEEEEESCE-EEEE--ECS----S--------------------C---EEEEEECCTTEEEEECTTC
T ss_pred             CEECcCcCCCceEEEEEEccEE-EEEE--ECC----c--------------------E---EEEEEECCCCcEEEeCCCE
Confidence            4566678999999999998753 3433  211    1                    1   2334455678999999999


Q ss_pred             CCCCcccCCCcccEEEEEecCC
Q 029632          148 WHAGPLFKADDMDFYNLELSNT  169 (190)
Q Consensus       148 WHa~pl~~~~~~dF~vle~~~~  169 (190)
                      ||. .....+.+  +.++++++
T Consensus        96 Wh~-~~~~s~~a--vllvlas~  114 (141)
T 2pa7_A           96 WHE-MHDFSSDC--VMMVLASD  114 (141)
T ss_dssp             EEE-EECCCTTC--EEEEEESS
T ss_pred             EEE-EEEcCCCe--EEEEECCC
Confidence            995 65555433  34455554

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=84.91  E-value=3.8  Score=32.74  Aligned_cols=73  Identities=12%  Similarity=0.128  Sum_probs=52.1

Q ss_pred             ceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEe---CCeeEEe
Q 029632           67 LKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIA---GPKFLKL  143 (190)
Q Consensus        67 ~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~---ggqgV~y  143 (190)
                      =.++-+=+|....|.+.-+.+.-+.++|=.-..                        .|.-.....|..+   ..+++-+
T Consensus        63 GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~------------------------SpTfg~~~~v~Ls~~~n~~~L~I  118 (174)
T 3ejk_A           63 RRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREK------------------------SPTSGRLAQVTLGRPDNYRLLRI  118 (174)
T ss_dssp             TCEEEEEEESSCCEEEEEEESEEEEEEECCCTT------------------------CTTTTCEEEEEEETTTBCEEEEE
T ss_pred             CCEECcEecCCCceEEEEEeeEEEEEEEeCCCC------------------------CCCCCeEEEEEECCccCceEEEe
Confidence            367778788778888888887665554422111                        1777789999998   6799999


Q ss_pred             cCCCCCCCcccCCC-cccEEEE
Q 029632          144 NRGTWHAGPLFKAD-DMDFYNL  164 (190)
Q Consensus       144 ~~GtWHa~pl~~~~-~~dF~vl  164 (190)
                      -+|+||. ...+.+ .+.++++
T Consensus       119 P~G~aHg-f~~lsd~~av~ly~  139 (174)
T 3ejk_A          119 PPQVWYG-FAATGDTPALVANC  139 (174)
T ss_dssp             CTTCEEE-EEECTTSCEEEEEE
T ss_pred             CCCcEEE-EEEccCCCEEEEEE
Confidence            9999994 665655 5665555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d2bdra1	166	b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA	4e-21
d1xsqa_	160	b.82.1.14 (A:) Ureidoglycolate hydrolase AllA {Shi	4e-19

>d2bdra1 b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA {Pseudomonas putida [TaxId: 303]} Length = 166

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Ureidoglycolate hydrolase AllA
domain: Ureidoglycolate hydrolase AllA
species: Pseudomonas putida [TaxId: 303]

 Score = 83.1 bits (205), Expect = 4e-21
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 37/184 (20%)

Query: 14  KLRAIEATAESFKEYGQVIEASADGEEFGPQ------------DAQLDLSRGIPRFYVMH 61
            L     T E+F ++G VIE                       +      + I   +   
Sbjct: 3   TLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRAD 62

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
            ++ PL    +  H   +Q    + G+ + + VA                          
Sbjct: 63  AQDMPLTVRMLERHPLGSQAFIPLLGNPFLIVVAPVGD---------------------- 100

Query: 122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHTTHSFKK 181
              P    VR F+  G + +  +RG WH   L      DF  ++ S +   +   H F +
Sbjct: 101 --APVSGLVRAFRSNGRQGVNYHRGVWHHPVLTIEKRDDFLVVDRSGS-GNNCDEHYFTE 157

Query: 182 NGVV 185
             ++
Sbjct: 158 EQML 161

>d1xsqa_ b.82.1.14 (A:) Ureidoglycolate hydrolase AllA {Shigella flexneri [TaxId: 623]} Length = 160

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Ureidoglycolate hydrolase AllA
domain: Ureidoglycolate hydrolase AllA
species: Shigella flexneri [TaxId: 623]

 Score = 78.1 bits (192), Expect = 4e-19
 Identities = 30/160 (18%), Positives = 48/160 (30%), Gaps = 35/160 (21%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADG---------EEFGPQDAQLDLSRGIPRFYVMHLE 63
           +KL+ +  + E+F  YG VIE              E +        L +      +   +
Sbjct: 1   MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQ 60

Query: 64  --NRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
             N PL    +  H   TQ    + G V+ + VA                          
Sbjct: 61  PANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDD---------------------- 98

Query: 122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDF 161
              P +  +R F   G + +  +R  WH          DF
Sbjct: 99  --KPDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDF 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2bdra1	166	Ureidoglycolate hydrolase AllA {Pseudomonas putida	100.0
d1xsqa_	160	Ureidoglycolate hydrolase AllA {Shigella flexneri	100.0

>d2bdra1 b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Ureidoglycolate hydrolase AllA
domain: Ureidoglycolate hydrolase AllA
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=9.4e-44  Score=287.33  Aligned_cols=145  Identities=22%  Similarity=0.326  Sum_probs=122.3

Q ss_pred             eceEEEeeCChhhccCCcceEeeCC-------CCCccC-cccccccc--CCCeeeEEEEEecC--CCceeeeeccCCCCe
Q 029632           12 TVKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDL--SRGIPRFYVMHLEN--RPLKFSTITHHASVT   79 (190)
Q Consensus        12 ~~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~--~~g~p~~~i~~~~~--~p~~v~~lERHp~ts   79 (190)
                      |++|+++|||+|||||||+||+..+       +|...+ ++.+.++.  .+|++.+++++++.  +|+++++|||||++|
T Consensus         1 M~~i~~epLT~eaFapfG~vi~~~~~~~~~iN~G~~~r~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~i~~lErHp~~s   80 (166)
T d2bdra1           1 MRTLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRADAQDMPLTVRMLERHPLGS   80 (166)
T ss_dssp             CEECCEEECCHHHHTTTEEEECSTTCCCEEEGGGTEEEEEEEEEECBSSTTCEEEEEEEEEECCCSSEEECEEEECTTBC
T ss_pred             CCceeceECCHHHhcccccEEecCCCCceeecCcccEEecccccccccCCCCcEEEEEEEeccccCccceeeeeecCCCc
Confidence            4589999999999999999999763       233322 23455555  35788888888754  578899999999999


Q ss_pred             eeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCcc
Q 029632           80 QCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDM  159 (190)
Q Consensus        80 Q~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~  159 (190)
                      |+|+||++.+|+|+||+++..                        ||++++|||+++|+|||+|++||||++++++++.+
T Consensus        81 Q~FiPl~~~~~lvvVA~~~~~------------------------Pd~~~~rAF~~~~~qgV~~~~G~WH~pl~~l~~~~  136 (166)
T d2bdra1          81 QAFIPLLGNPFLIVVAPVGDA------------------------PVSGLVRAFRSNGRQGVNYHRGVWHHPVLTIEKRD  136 (166)
T ss_dssp             EEEEESSCCCEEEEEECSSSS------------------------CCGGGCEEEEECSSCEEEECTTCEECSCEESSSEE
T ss_pred             eEEEecCCCcEEEEEeCCccC------------------------CChhheEEEEeCCCcEEEeCCCceeCCccccCCCc
Confidence            999999999999999987643                        99999999999999999999999998888887789


Q ss_pred             cEEEEEecCCcccccceeeeec
Q 029632          160 DFYNLELSNTNVVDHTTHSFKK  181 (190)
Q Consensus       160 dF~vle~~~~~~~d~~~~~~~~  181 (190)
                      ||+|+++.+ .+.||+.+.|.+
T Consensus       137 ~F~vidr~~-~~~n~~~~~f~~  157 (166)
T d2bdra1         137 DFLVVDRSG-SGNNCDEHYFTE  157 (166)
T ss_dssp             EEEEEEEEC-SSCCCEEEECCG
T ss_pred             eEEEEeCCC-CCCCeeEEECCC
Confidence            999999664 588999999987

>d1xsqa_ b.82.1.14 (A:) Ureidoglycolate hydrolase AllA {Shigella flexneri [TaxId: 623]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Ureidoglycolate hydrolase AllA
domain: Ureidoglycolate hydrolase AllA
species: Shigella flexneri [TaxId: 623]

Probab=100.00  E-value=1.9e-43  Score=283.95  Aligned_cols=147  Identities=21%  Similarity=0.344  Sum_probs=122.1

Q ss_pred             eEEEeeCChhhccCCcceEeeCCC-------CCccC-ccccccccC-CCeeeEEEEEec--CCCceeeeeccCCCCeeee
Q 029632           14 KLRAIEATAESFKEYGQVIEASAD-------GEEFG-PQDAQLDLS-RGIPRFYVMHLE--NRPLKFSTITHHASVTQCL   82 (190)
Q Consensus        14 ~I~a~pLT~eaFAPfG~VI~~~~~-------g~~~~-~~~a~l~~~-~g~p~~~i~~~~--~~p~~v~~lERHp~tsQ~F   82 (190)
                      +|+++|||+|||||||+||+.++.       |...+ ++.+.++.. +|.+.+++++++  .+|+++++|||||++||+|
T Consensus         2 ~l~~~pLT~e~FapfG~vI~~~~~~~~~in~G~~~~~~~~a~~~~~~~g~~~~~i~~~~~~~~p~~i~~lErHp~~sQ~F   81 (160)
T d1xsqa_           2 KLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQPANLPLTIHELERHPLGTQAF   81 (160)
T ss_dssp             EEEEEECCHHHHTTTEEEECCTTCCCEEC----CEEEEEEEEECBSSCSCEEEEEEEECBCCSSCEEEEEEECTTBCEEE
T ss_pred             ceeeEECCHHHcCccceEEecCCCCceeccCccceEEcchhhcccccCCCceEeEeeecccccccceeeeecCCCceeEE
Confidence            689999999999999999997642       43333 344666653 577888888865  4679999999999999999


Q ss_pred             eeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCcccEE
Q 029632           83 GSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFY  162 (190)
Q Consensus        83 iPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~  162 (190)
                      +||++.+|+|+||+++..                        ||++++|||+++|+|||+|++||||++++++.+.+||+
T Consensus        82 iPl~~~~~lvvVA~~~~~------------------------Pd~~~iraF~~~~~qgV~~~~g~WH~pl~~l~~~~dF~  137 (160)
T d1xsqa_          82 IPMKGEVFVVVVALGDDK------------------------PDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFL  137 (160)
T ss_dssp             EESBCCCCEEEEEECSSS------------------------CEEEEEEEEECCSSCEEEECTTCEECCCCBSSSCEEEE
T ss_pred             EEcCCCcEEEEEECCCCC------------------------CCccceEEEEeCCCcEEEEcCCeEEcccccCCCCceEE
Confidence            999999999999988643                        89999999999999999999999998888777789999


Q ss_pred             EEEecCCcccccceeeeecCCEEE
Q 029632          163 NLELSNTNVVDHTTHSFKKNGVVY  186 (190)
Q Consensus       163 vle~~~~~~~d~~~~~~~~~~~~~  186 (190)
                      ++++.+++  ||+.+.|.+..+.|
T Consensus       138 vidr~~~~--d~~~~~~~~~~i~~  159 (160)
T d1xsqa_         138 TIDRGGSD--NCDVESIPEQELCF  159 (160)
T ss_dssp             EEECC--C--CCEEEEEEEEEEEC
T ss_pred             EEEccCCC--CceEEEcCccceee
Confidence            99987754  99999998765543