Citrus Sinensis ID: 029676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MDDYRTRRSISSQQTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEcccEEEccHHHHHHHHHHHccccccccccccccccccccccccccHHccEEEEEEEHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccEEEEHHHHHHEEHHHHHHHHHHEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEHHHcccEEHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mddyrtrrsissqqtssttSIHVTAIDGIVNVNSLFTVAVFVGlslsppgpehqssrshyqeskcvagpevsRMLTVYEVVSFSFFLFSSLVAQGVKLAINLrnsvvvddefkAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH
Flexible Loop (DISEMBL)
mddyrtrrsissqqtssttsihvTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH
Low Complexity Region (SEG)
MDDYrtrrsissqqtssttsiHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEvvsfsfflfsslvAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH
Disordered region (IsUnstruct)
********************IHVTAIDGIVNVNSLFTVAVFVGLS*******************CVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFC*
Disordered Region (DISOPRED)
**********************VTAIDGIVNVNSLFTVAVFVGLSLSP****************CVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH
Disordered Region (DISEMBL)
*******************SIHVTAIDGIVNVNSLFTVAVFVGLSLS******************VAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH
Disordered Region (DISPRO)
*****************TTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPP************ESKCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDYRTRRSISSQQTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
326498663	196	predicted protein [Hordeum vulgare subsp	0.899	0.867	0.607	3e-45
148906198	190	unknown [Picea sitchensis]	0.899	0.894	0.537	4e-45
225470397	194	PREDICTED: uncharacterized protein LOC10	0.962	0.938	0.601	5e-44
357145933	200	PREDICTED: uncharacterized protein LOC10	0.947	0.895	0.537	5e-43
115481306	199	Os10g0178200 [Oryza sativa Japonica Grou	0.904	0.859	0.568	1e-42
242080685	208	hypothetical protein SORBIDRAFT_07g00427	0.904	0.822	0.562	2e-42
195611316	212	hypothetical protein [Zea mays] gi|41392	0.904	0.806	0.556	3e-42
212721770	200	uncharacterized protein LOC100192710 [Ze	0.904	0.855	0.556	3e-42
18397969	189	uncharacterized protein [Arabidopsis tha	0.867	0.867	0.603	2e-41
297833540	189	hypothetical protein ARALYDRAFT_478070 [	0.867	0.867	0.603	3e-41

>gi|326498663|dbj|BAK02317.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518282|dbj|BAJ88170.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 129/176 (73%), Gaps = 6/176 (3%)

Query: 15  TSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRM 74
           +++TTS+HVTA+DG+VNVNSLFTVAVFVGLSL+ PG      RS   +S C AGPEV+R 
Sbjct: 26  SANTTSVHVTALDGVVNVNSLFTVAVFVGLSLATPG----ELRSLAGDSSCDAGPEVARS 81

Query: 75  LTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVI 134
           L V EVV+FS FLFSSLVAQG+KLAINL NS   DD   AH +A LLR  M+ASA GSV+
Sbjct: 82  LLVLEVVAFSSFLFSSLVAQGLKLAINLINSKDPDDT-HAHIDARLLRLGMLASAVGSVV 140

Query: 135 GCLFLMLSMVKVVEIQMGIFSCG-NEHVLQAVASMVVFVTSGLVVYISTVTYAFCH 189
           GC+FLM SMV VV+I++G   C  N    +A A +V  V++ LVVYISTV Y F H
Sbjct: 141 GCVFLMASMVMVVQIRLGTLGCASNRAAAKAAAGLVGLVSTALVVYISTVFYTFTH 196

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148906198|gb|ABR16255.1| unknown [Picea sitchensis]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 124/175 (70%), Gaps = 5/175 (2%)

Query: 15  TSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRM 74
           +  TTS+HVTA+DG+VNVNSLFTVAVFVGLSL+ PG      RS      C AG ++ + 
Sbjct: 21  SKGTTSVHVTALDGLVNVNSLFTVAVFVGLSLATPGQ-----RSLEDSGACNAGEDIVKN 75

Query: 75  LTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVI 134
           L ++EV SFS FLFSSL+AQG+KLAI + NS  + +  K H N  LLR  M+ASA GS++
Sbjct: 76  LLIFEVTSFSAFLFSSLIAQGLKLAIIINNSNELHEAMKGHINNKLLRLGMLASAIGSIM 135

Query: 135 GCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH 189
           GC+FLMLSMV V++I++G+ SCG    ++A   +V  V++ L +YISTV YAF H
Sbjct: 136 GCVFLMLSMVNVIQIRLGVLSCGGSSTVRATLVLVALVSTALAIYISTVIYAFTH 190

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470397|ref|XP_002273015.1| PREDICTED: uncharacterized protein LOC100246515 [Vitis vinifera] gi|359495402|ref|XP_003634982.1| PREDICTED: uncharacterized protein LOC100855266 [Vitis vinifera]

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 141/188 (75%), Gaps = 6/188 (3%)

Query: 3   DYRTRR-SISSQQTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQ 61
           +Y  RR + SS    STTS+HVTA+DG+VNVNSLFT+AVFVGLSL+ P      +R+   
Sbjct: 12  EYDGRRIASSSSCPPSTTSVHVTALDGLVNVNSLFTIAVFVGLSLTTPNQHSLENRA--- 68

Query: 62  ESKCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLL 121
              C AG +V+R L V+EVVSFSFFLFSSL+AQG+KLAINL NS  VDD F+AH N  +L
Sbjct: 69  --GCDAGIDVARRLLVFEVVSFSFFLFSSLIAQGLKLAINLLNSKDVDDAFRAHINLKVL 126

Query: 122 RCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYIS 181
           R  M+ SA GSV+GCLFLMLSMV V+EI++G+ SCG+   + AVA+++V V+S LVVYIS
Sbjct: 127 RFGMLGSAVGSVLGCLFLMLSMVNVIEIRLGLLSCGSRSAVHAVAALLVLVSSALVVYIS 186

Query: 182 TVTYAFCH 189
           T  YAF H
Sbjct: 187 TAVYAFMH 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357145933|ref|XP_003573818.1| PREDICTED: uncharacterized protein LOC100841558 [Brachypodium distachyon]

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 129/188 (68%), Gaps = 9/188 (4%)

Query: 3   DYRTRRSISSQQTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQE 62
           ++R   ++S+     TT +HVTA+DG+VNVNSLFTVAVFVGLSL+ PG      RS   +
Sbjct: 21  EWRLPAALSAN----TTGVHVTALDGVVNVNSLFTVAVFVGLSLATPG----QLRSLAGD 72

Query: 63  SKCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLR 122
             C AGPEV+R L V EVV+FS FLFSSLVAQG+KLA+NL NS    D   AH +A +LR
Sbjct: 73  PACDAGPEVARSLLVLEVVAFSSFLFSSLVAQGLKLALNLINSKDPHDTLHAHIDARVLR 132

Query: 123 CLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCG-NEHVLQAVASMVVFVTSGLVVYIS 181
             M+ASA GSV+GC+FLM+SMV VV+I++G   C  N+   +A   +V  V++ L VYI 
Sbjct: 133 LGMLASAVGSVVGCVFLMVSMVMVVQIRLGTLGCASNKAAAKAATGLVGLVSTALAVYIG 192

Query: 182 TVTYAFCH 189
           TV Y F H
Sbjct: 193 TVFYTFTH 200

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115481306|ref|NP_001064246.1| Os10g0178200 [Oryza sativa Japonica Group] gi|21671930|gb|AAM74292.1|AC083944_10 Hypothetical protein [Oryza sativa Japonica Group] gi|31430525|gb|AAP52427.1| expressed protein [Oryza sativa Japonica Group] gi|113638855|dbj|BAF26160.1| Os10g0178200 [Oryza sativa Japonica Group] gi|125531287|gb|EAY77852.1| hypothetical protein OsI_32894 [Oryza sativa Indica Group] gi|125574180|gb|EAZ15464.1| hypothetical protein OsJ_30881 [Oryza sativa Japonica Group] gi|215741337|dbj|BAG97832.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 125/176 (71%), Gaps = 5/176 (2%)

Query: 15  TSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRM 74
           +++TTS+HVTA+DG+VNVNSLFTVAVFVGLSL+ PG      RS   ++ C AG  V+R 
Sbjct: 28  SANTTSVHVTALDGVVNVNSLFTVAVFVGLSLADPGEL----RSLAGDASCDAGQGVARS 83

Query: 75  LTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVI 134
           L V EVV+FS FLFSSLVAQG+KLA+NL NS    D   AH +A LLR  M+ASA GSV+
Sbjct: 84  LLVLEVVAFSSFLFSSLVAQGLKLALNLINSKDPHDTLHAHIDARLLRLGMLASAVGSVV 143

Query: 135 GCLFLMLSMVKVVEIQMGIFSCG-NEHVLQAVASMVVFVTSGLVVYISTVTYAFCH 189
           GC+FLM+SMV VV+I++G   C  N    +A A +V  VT+ L VY+ TV Y F H
Sbjct: 144 GCVFLMVSMVMVVQIRLGTLGCATNRAAAKAAAGLVGLVTTALAVYVGTVFYTFTH 199

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242080685|ref|XP_002445111.1| hypothetical protein SORBIDRAFT_07g004270 [Sorghum bicolor] gi|241941461|gb|EES14606.1| hypothetical protein SORBIDRAFT_07g004270 [Sorghum bicolor]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 125/176 (71%), Gaps = 5/176 (2%)

Query: 15  TSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRM 74
           +++TTS+HVTA+DG+VNVNSLFTVAVFVGLSL+ PG      RS   + +C AG  V+R 
Sbjct: 37  SANTTSVHVTALDGVVNVNSLFTVAVFVGLSLATPG----QLRSLANDPRCDAGAGVARS 92

Query: 75  LTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVI 134
           L V EVV+FS FLFSSLVAQG+KLA+NL NS    D  +AH +A +LR  M+ASA GSV+
Sbjct: 93  LLVLEVVAFSSFLFSSLVAQGLKLALNLINSKDPHDALRAHIDARVLRLGMLASAVGSVV 152

Query: 135 GCLFLMLSMVKVVEIQMGIFSCGNEH-VLQAVASMVVFVTSGLVVYISTVTYAFCH 189
           GC+FLM SMV VV+I++G   C  +    +A A +V  VT+ L VYI TV Y F H
Sbjct: 153 GCVFLMTSMVMVVQIRLGTLGCPTDRAAAKAAAGLVGLVTTALAVYIGTVFYTFTH 208

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195611316|gb|ACG27488.1| hypothetical protein [Zea mays] gi|413921208|gb|AFW61140.1| hypothetical protein ZEAMMB73_619363 [Zea mays]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 126/176 (71%), Gaps = 5/176 (2%)

Query: 15  TSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRM 74
           +++TTS+HVTA+DG+VNVNSLFTVAVFVGLSL+ PG      RS   + +C AGP V+R 
Sbjct: 41  SANTTSVHVTALDGVVNVNSLFTVAVFVGLSLATPG----QLRSLAGDPRCDAGPGVARS 96

Query: 75  LTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVI 134
           L V EVV+FS FLFSSLVAQG+KLA+NL NS    D  +AH +A +LR  M+ASA GSV+
Sbjct: 97  LLVLEVVAFSSFLFSSLVAQGLKLALNLINSKDPHDAARAHIDARVLRLGMLASAVGSVV 156

Query: 135 GCLFLMLSMVKVVEIQMGIFSCGNEH-VLQAVASMVVFVTSGLVVYISTVTYAFCH 189
           GC+FLM SMV VV++++G  SC  +    +A A +V  VT+ L  Y+ TV Y F H
Sbjct: 157 GCVFLMTSMVMVVQVRLGTLSCPTDRAAAKAAAGLVGLVTTALAFYVGTVFYTFTH 212

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721770|ref|NP_001131384.1| uncharacterized protein LOC100192710 [Zea mays] gi|194691384|gb|ACF79776.1| unknown [Zea mays] gi|195640248|gb|ACG39592.1| hypothetical protein [Zea mays] gi|413921207|gb|AFW61139.1| hypothetical protein ZEAMMB73_619363 [Zea mays]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 126/176 (71%), Gaps = 5/176 (2%)

Query: 15  TSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRM 74
           +++TTS+HVTA+DG+VNVNSLFTVAVFVGLSL+ PG      RS   + +C AGP V+R 
Sbjct: 29  SANTTSVHVTALDGVVNVNSLFTVAVFVGLSLATPG----QLRSLAGDPRCDAGPGVARS 84

Query: 75  LTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVI 134
           L V EVV+FS FLFSSLVAQG+KLA+NL NS    D  +AH +A +LR  M+ASA GSV+
Sbjct: 85  LLVLEVVAFSSFLFSSLVAQGLKLALNLINSKDPHDAARAHIDARVLRLGMLASAVGSVV 144

Query: 135 GCLFLMLSMVKVVEIQMGIFSCGNEH-VLQAVASMVVFVTSGLVVYISTVTYAFCH 189
           GC+FLM SMV VV++++G  SC  +    +A A +V  VT+ L  Y+ TV Y F H
Sbjct: 145 GCVFLMTSMVMVVQVRLGTLSCPTDRAAAKAAAGLVGLVTTALAFYVGTVFYTFTH 200

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397969|ref|NP_566310.1| uncharacterized protein [Arabidopsis thaliana] gi|145331996|ref|NP_001078120.1| uncharacterized protein [Arabidopsis thaliana] gi|13877549|gb|AAK43852.1|AF370475_1 Unknown protein [Arabidopsis thaliana] gi|20148735|gb|AAM10258.1| unknown protein [Arabidopsis thaliana] gi|332641030|gb|AEE74551.1| uncharacterized protein [Arabidopsis thaliana] gi|332641031|gb|AEE74552.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/169 (60%), Positives = 133/169 (78%), Gaps = 5/169 (2%)

Query: 21  IHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEV 80
           +HV+A+DG+VNVNSLFT+AVFVGLSL+ PG +H    S  Q S C A  +V++ L V+EV
Sbjct: 26  VHVSALDGLVNVNSLFTIAVFVGLSLATPG-QH----SLEQRSSCDASADVAKKLLVFEV 80

Query: 81  VSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLM 140
           VSFSFFLFSSLVAQG+KLA+NL NS  V++ F+AH N  +LR  M+ASA GSV+GCLFLM
Sbjct: 81  VSFSFFLFSSLVAQGLKLALNLLNSKDVNEIFRAHINIKVLRWGMMASAVGSVMGCLFLM 140

Query: 141 LSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH 189
           LSMV V++I++G+ SCG++   QAVA++V  V+S L++YIST  YAF H
Sbjct: 141 LSMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAFWH 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833540|ref|XP_002884652.1| hypothetical protein ARALYDRAFT_478070 [Arabidopsis lyrata subsp. lyrata] gi|297330492|gb|EFH60911.1| hypothetical protein ARALYDRAFT_478070 [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/169 (60%), Positives = 133/169 (78%), Gaps = 5/169 (2%)

Query: 21  IHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEV 80
           +HV+A+DG+VNVNSLFT+AVFVGLSL+ PG +H    S  Q S C A  +V++ L V+EV
Sbjct: 26  VHVSALDGLVNVNSLFTIAVFVGLSLATPG-QH----SLEQRSSCDASADVAKKLLVFEV 80

Query: 81  VSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLM 140
           VSFSFFLFSSLVAQG+KLA+NL NS  V++ F+AH N  +LR  M+ASA GSV+GCLFLM
Sbjct: 81  VSFSFFLFSSLVAQGLKLALNLLNSKDVNEIFRAHINIKVLRWGMMASAVGSVMGCLFLM 140

Query: 141 LSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH 189
           LSMV V++I++G+ SCG++   QAVA++V  V+S L++YIST  YAF H
Sbjct: 141 LSMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAFWH 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2079666	189	AT3G07510 "AT3G07510" [Arabido	0.862	0.862	0.529	3.3e-40
TAIR|locus:2153689	175	MEE60 "AT5G05950" [Arabidopsis	0.857	0.925	0.372	2.6e-24
TAIR|locus:2102742	204	AT3G46890 "AT3G46890" [Arabido	0.883	0.818	0.347	7.2e-20

TAIR|locus:2079666 AT3G07510 "AT3G07510" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 89/168 (52%), Positives = 119/168 (70%)

Query:    22 HVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEXX 81
             HV+A+DG+VNVNSLFT+AVFVGLSL+ PG +H    S  Q S C A  +V++ L V+E  
Sbjct:    27 HVSALDGLVNVNSLFTIAVFVGLSLATPG-QH----SLEQRSSCDASADVAKKLLVFEVV 81

Query:    82 XXXXXXXXXXXAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLML 141
                        AQG+KLA+NL NS  V++ F+AH N  +LR  M+ASA GSV+GCLFLML
Sbjct:    82 SFSFFLFSSLVAQGLKLALNLLNSKDVNEIFRAHINIKVLRWGMMASAVGSVMGCLFLML 141

Query:   142 SMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH 189
             SMV V++I++G+ SCG++   QAVA++V  V+S L++YIST  YAF H
Sbjct:   142 SMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAFWH 189

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2153689 MEE60 "AT5G05950" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/172 (37%), Positives = 95/172 (55%)

Query:    22 HVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEXX 81
             H+TA+DGIVNVNSLFT+AVF+GL+ +P  P++    S   +  CV    ++  L  +   
Sbjct:     6 HITALDGIVNVNSLFTLAVFIGLAWNPTDPDN----SLVTDPNCVPTARMAENLVAFHVY 61

Query:    82 XXXXXXXXXXXAQGVKLA--INLRNSVVVD---DEFKAHFNANLLRCLMIASAAGSVIGC 136
                        A G+K A  +N+ +S  +    D    + N   LR  M+ S  GSV GC
Sbjct:    62 SFASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYYVNKTALRFGMVTSGLGSVCGC 121

Query:   137 LFLMLSMVKVVEIQMGIFSCG-NEHVLQAVASMVVFVTSGLVVYISTVTYAF 187
              FLML+++ VV+I++G   CG + H   AV  +V+ V S L +Y+S + YAF
Sbjct:   122 GFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAF 173

GO:0003674 "molecular_function" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2102742 AT3G46890 "AT3G46890" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 64/184 (34%), Positives = 98/184 (53%)

Query:    22 HVTAIDGIVNVNSLFTVAVFVGLSLSP--PGPEHQSSRSHYQESKCVA--GPEVSRMLTV 77
             HVTAIDGIVNVNSLF++A+F+GL+ S     P   S+  ++   +C++  GP ++  L  
Sbjct:    22 HVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPALAERLVS 81

Query:    78 YEXXXXXXXXXXXXXAQGVKLAINLR----NSVVVDDEFKAHFNA-----NL--LRCLMI 126
                            A  +K AI       N   +++E +   NA     NL  LR  ++
Sbjct:    82 SHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARV-LNAGEGRVNLAALRVGIV 140

Query:   127 ASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNE-HVLQAVASMVVFVTSGLVVYISTVTY 185
             AS   SV+GC FL +++V +V+I++G   C    H L A+  +VV V S L++Y+  V Y
Sbjct:   141 ASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALIIYVFLVLY 200

Query:   186 AFCH 189
             AF +
Sbjct:   201 AFIY 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.135   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       159   0.00091  106 3  11 22  0.42    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.24u 0.20s 13.44t   Elapsed:  00:00:00
  Total cpu time:  13.24u 0.20s 13.44t   Elapsed:  00:00:00
  Start:  Sat May 11 07:00:59 2013   End:  Sat May 11 07:00:59 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00