Citrus Sinensis ID: 029760

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV
cccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEccEEEEcHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccHHHHHccc
ccccEEccccccccccccccHEEEHccccccccHcccccccccccccHHHHHHHHHHHHHHccccccccHccEccccccEEEEEEEccccEEEcHHHHHHHHHHccccEEEEEEEccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHH
MPGILSISTlvwphlctnsRQVVKMSAtgirkpgfespaiklpshptydlkGVVKLALAedagdrgdvtcmatiPLDMEVEAHFLAKEDGIIAGIALAEMIFhevdpslkvewslkdgdhvhkglqfgkvsgRAHSIVIAERVVLNFMQRMSGIATLTRAMADlahpatiletrktaptlrlldkwav
MPGILSISTLVWPHLCTNSRQVVKMSATGIRKPgfespaiklpshptYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLqfgkvsgraHSIVIAERVVLNFMQRMSGIATLTRAMADLAHpatiletrktaptlrlldkwav
MPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV
***ILSISTLVWPHLCTNSRQVVKMSATGIRKPGF**PAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLL*****
*********LVWPHLCT*********************AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV
MPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV
*PGILSISTLVWPHLCTNSRQVVKMSAT*IRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query188 2.2.26 [Sep-21-2011]
P77938 296 Probable nicotinate-nucle yes no 0.776 0.493 0.411 7e-23
P30819 282 Nicotinate-nucleotide pyr yes no 0.771 0.514 0.385 5e-19
P39666 289 Probable nicotinate-nucle yes no 0.728 0.474 0.397 5e-17
P74301 295 Probable nicotinate-nucle N/A no 0.670 0.427 0.395 5e-17
O27860 279 Probable nicotinate-nucle yes no 0.638 0.430 0.388 2e-14
A7SG73 289 Nicotinate-nucleotide pyr N/A no 0.563 0.366 0.375 6e-14
P43619 295 Nicotinate-nucleotide pyr yes no 0.563 0.359 0.355 9e-14
P46714 284 Nicotinate-nucleotide pyr yes no 0.734 0.485 0.359 1e-13
P30012 297 Nicotinate-nucleotide pyr yes no 0.744 0.471 0.321 2e-13
O28439 258 Probable nicotinate-nucle yes no 0.622 0.453 0.354 4e-12
>sp|P77938|NADC_RHORU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Rhodospirillum rubrum GN=nadC PE=3 SV=1 Back     alignment and function desciption
 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 7/153 (4%)

Query: 43  PSHPT-----YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIAL 97
           P+HP      + +   V+ ALAED G  GD+T  ATIP      A F+A++ GI+AG+  
Sbjct: 3   PNHPVAALSPFAIDEAVRRALAEDLGRAGDITSTATIPAATRAHARFVARQPGILAGLGC 62

Query: 98  AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATL 157
           A   F  +D ++     L+DG  +  G    +V+G A +I+ AER  LNF+  +SGIAT 
Sbjct: 63  ARSAFALLDDTVTFTTPLEDGAEIAAGQTVAEVAGAARTILAAERTALNFLGHLSGIATR 122

Query: 158 TRAMAD-LAHP-ATILETRKTAPTLRLLDKWAV 188
           TR   D +AH  A +  TRKT P LR L+K+AV
Sbjct: 123 TRRFGDAIAHTRARLTCTRKTTPGLRGLEKYAV 155
Involved in the catabolism of quinolinic acid (QA).
Rhodospirillum rubrum (taxid: 1085)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 9
>sp|P30819|NADC_PSEAE Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=nadC PE=3 SV=2 Back     alignment and function description
>sp|P39666|NADC_BACSU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Bacillus subtilis (strain 168) GN=nadC PE=1 SV=2 Back     alignment and function description
>sp|P74301|NADC_SYNY3 Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=nadC PE=3 SV=1 Back     alignment and function description
>sp|O27860|NADC_METTH Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=nadC PE=3 SV=1 Back     alignment and function description
>sp|A7SG73|NADC_NEMVE Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Fragment) OS=Nematostella vectensis GN=qprt PE=3 SV=1 Back     alignment and function description
>sp|P43619|NADC_YEAST Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BNA6 PE=1 SV=1 Back     alignment and function description
>sp|P46714|NADC_MYCLE Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Mycobacterium leprae (strain TN) GN=nadC PE=3 SV=1 Back     alignment and function description
>sp|P30012|NADC_SALTY Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nadC PE=1 SV=3 Back     alignment and function description
>sp|O28439|NADC_ARCFU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=nadC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
255570096 353 Nicotinate-nucleotide pyrophosphorylase 1.0 0.532 0.763 2e-79
356530754 377 PREDICTED: probable nicotinate-nucleotid 1.0 0.498 0.747 1e-75
111035808 350 putative quinolinate phosphirobosyltrans 0.994 0.534 0.75 4e-75
359472633 363 PREDICTED: probable nicotinate-nucleotid 0.898 0.465 0.807 8e-75
217072004 374 unknown [Medicago truncatula] 0.898 0.451 0.801 1e-74
363807606 377 uncharacterized protein LOC100776131 [Gl 0.898 0.448 0.795 3e-74
388495338217 unknown [Medicago truncatula] 0.898 0.778 0.801 9e-74
224101821 329 predicted protein [Populus trichocarpa] 0.872 0.498 0.807 2e-73
187942098 350 putative quinolinate phosphoribosyltrans 0.930 0.5 0.784 4e-73
297817722 348 hypothetical protein ARALYDRAFT_484052 [ 0.984 0.531 0.718 3e-72
>gi|255570096|ref|XP_002526010.1| Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis] gi|223534657|gb|EEF36350.1| Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/190 (76%), Positives = 161/190 (84%), Gaps = 2/190 (1%)

Query: 1   MPGILSISTLVWPHLCTNSRQVVKMSATGIRKPG--FESPAIKLPSHPTYDLKGVVKLAL 58
           M  +   S L  PH  T SR++V+MSA   R P   F+S  IK PSHPTYDLKGV+KLAL
Sbjct: 1   MSAVTFNSLLTLPHFLTTSRRIVRMSAIDTRNPSTLFQSMTIKPPSHPTYDLKGVIKLAL 60

Query: 59  AEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDG 118
           AEDAGDRGDVTC+AT+P +MEVEA+FLAKEDGIIAGIALAEM+FHEVDPSL VEWS KDG
Sbjct: 61  AEDAGDRGDVTCIATVPSEMEVEAYFLAKEDGIIAGIALAEMLFHEVDPSLTVEWSRKDG 120

Query: 119 DHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAP 178
           D+VHKGLQFGKVSGRAH+IV+AERV LNFMQRMSGIATLT+AMAD A PA ILETRKTAP
Sbjct: 121 DYVHKGLQFGKVSGRAHNIVVAERVALNFMQRMSGIATLTKAMADAASPACILETRKTAP 180

Query: 179 TLRLLDKWAV 188
            LRL+DKWAV
Sbjct: 181 GLRLVDKWAV 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi|356530754|ref|XP_003533945.1| PREDICTED: probable nicotinate-nucleotide pyrophosphorylase [carboxylating]-like [Glycine max] Back     alignment and taxonomy information
>gi|111035808|emb|CAH04306.1| putative quinolinate phosphirobosyltransferase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|359472633|ref|XP_002284233.2| PREDICTED: probable nicotinate-nucleotide pyrophosphorylase [carboxylating] [Vitis vinifera] Back     alignment and taxonomy information
>gi|217072004|gb|ACJ84362.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|363807606|ref|NP_001242666.1| uncharacterized protein LOC100776131 [Glycine max] gi|255641879|gb|ACU21208.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388495338|gb|AFK35735.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224101821|ref|XP_002312433.1| predicted protein [Populus trichocarpa] gi|222852253|gb|EEE89800.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|187942098|emb|CAP57999.1| putative quinolinate phosphoribosyltransferase1 [Nicotiana glauca] Back     alignment and taxonomy information
>gi|297817722|ref|XP_002876744.1| hypothetical protein ARALYDRAFT_484052 [Arabidopsis lyrata subsp. lyrata] gi|297322582|gb|EFH53003.1| hypothetical protein ARALYDRAFT_484052 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
TAIR|locus:2038791 348 QPT "quinolinate phoshoribosyl 0.984 0.531 0.718 4.5e-66
TIGR_CMR|BA_4661 277 BA_4661 "nicotinate-nucleotide 0.675 0.458 0.462 3.9e-21
TIGR_CMR|GSU_1936 276 GSU_1936 "nicotinate-nucleotid 0.734 0.5 0.397 1.3e-20
TIGR_CMR|CHY_2372 283 CHY_2372 "nicotinate-nucleotid 0.75 0.498 0.386 1.7e-20
TIGR_CMR|CBU_0098 274 CBU_0098 "nicotinate-nucleotid 0.728 0.5 0.382 2.1e-20
TIGR_CMR|SPO_3245 288 SPO_3245 "nicotinate-nucleotid 0.813 0.531 0.387 2.5e-19
TIGR_CMR|DET_1382 285 DET_1382 "nicotinate-nucleotid 0.734 0.484 0.340 9.5e-18
TIGR_CMR|ECH_0026 279 ECH_0026 "nicotinate-nucleotid 0.707 0.476 0.378 1.1e-16
TIGR_CMR|CPS_4813 298 CPS_4813 "nicotinate-nucleotid 0.739 0.466 0.354 4.7e-16
TIGR_CMR|NSE_0122 286 NSE_0122 "nicotinate-nucleotid 0.728 0.479 0.340 1.4e-14
TAIR|locus:2038791 QPT "quinolinate phoshoribosyltransferase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 133/185 (71%), Positives = 150/185 (81%)

Query:     4 ILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAG 63
             ++S+S  + P      R  VKMSA+  +  G  S  IK PSHPTYDLK V+KLALAEDAG
Sbjct:     1 MISVSRFLSPQFYAIPRSFVKMSASATQTAGEVSMGIKPPSHPTYDLKAVIKLALAEDAG 60

Query:    64 DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 123
               GDVTCMATIP DMEVEA+FLAKEDGI+AG+ALA+MIF  VDPSLKVEW  KDGD+VHK
Sbjct:    61 HTGDVTCMATIPFDMEVEAYFLAKEDGIVAGVALADMIFEHVDPSLKVEWMRKDGDYVHK 120

Query:   124 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLL 183
             GL+FGKVSG AH IV+AERV+LNFMQRMSGIATLT+ MAD A PA ILETRKTAP LRL+
Sbjct:   121 GLKFGKVSGNAHKIVVAERVLLNFMQRMSGIATLTKLMADAASPACILETRKTAPGLRLV 180

Query:   184 DKWAV 188
             DKWAV
Sbjct:   181 DKWAV 185
GO:0003824 "catalytic activity" evidence=IEA
GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA;IGI;ISS;IMP
GO:0009435 "NAD biosynthetic process" evidence=IEA;IGI;IMP
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016763 "transferase activity, transferring pentosyl groups" evidence=IEA
GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA
TIGR_CMR|BA_4661 BA_4661 "nicotinate-nucleotide pyrophosphorylase, carboxylating" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1936 GSU_1936 "nicotinate-nucleotide pyrophosphorylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2372 CHY_2372 "nicotinate-nucleotide pyrophosphorylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0098 CBU_0098 "nicotinate-nucleotide pyrophosphorylase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3245 SPO_3245 "nicotinate-nucleotide pyrophosphorylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1382 DET_1382 "nicotinate-nucleotide pyrophosphorylase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0026 ECH_0026 "nicotinate-nucleotide pyrophosphorylase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4813 CPS_4813 "nicotinate-nucleotide pyrophosphorylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0122 NSE_0122 "nicotinate-nucleotide pyrophosphorylase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VIII0550
nicotinate-nucleotide diphosphorylase (carboxylating) (EC-2.4.2.19) (329 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.I.2445.1
L-aspartate oxidase (601 aa)
••••  • 0.969
estExt_fgenesh4_pg.C_LG_V0531
nicotinate phosphoribosyltransferase (EC-2.4.2.11) (559 aa)
•    •• 0.941
estExt_fgenesh4_pm.C_LG_VII0321
nicotinate phosphoribosyltransferase (EC-2.4.2.11) (560 aa)
•    •• 0.941
fgenesh4_pm.C_scaffold_308000002
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (247 aa)
     •• 0.909
gw1.XIII.983.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
     •• 0.909
gw1.70.673.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
     •• 0.909
fgenesh4_pg.C_LG_XV000597
quinolinate synthetase A (724 aa)
     •• 0.907
grail3.0151001701
hypothetical protein (395 aa)
     •  0.899
grail3.0006001701
hypothetical protein (247 aa)
     •  0.900
fgenesh4_pg.C_scaffold_145000062
hypothetical protein (414 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
PLN02716 308 PLN02716, PLN02716, nicotinate-nucleotide diphosph 3e-94
cd01572 268 cd01572, QPRTase, Quinolinate phosphoribosyl trans 5e-60
cd01568 269 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl 4e-52
COG0157 280 COG0157, NadC, Nicotinate-nucleotide pyrophosphory 6e-48
TIGR00078 265 TIGR00078, nadC, nicotinate-nucleotide pyrophospho 1e-40
PRK08072 277 PRK08072, PRK08072, nicotinate-nucleotide pyrophos 5e-40
PRK06543 281 PRK06543, PRK06543, nicotinate-nucleotide pyrophos 6e-35
PRK06106 281 PRK06106, PRK06106, nicotinate-nucleotide pyrophos 4e-32
PRK08385 278 PRK08385, PRK08385, nicotinate-nucleotide pyrophos 5e-32
pfam0274988 pfam02749, QRPTase_N, Quinolinate phosphoribosyl t 4e-31
PRK05742 277 PRK05742, PRK05742, nicotinate-nucleotide pyrophos 1e-30
PRK07896 289 PRK07896, PRK07896, nicotinate-nucleotide pyrophos 5e-29
PRK07428 288 PRK07428, PRK07428, nicotinate-nucleotide pyrophos 3e-27
PRK05848 273 PRK05848, PRK05848, nicotinate-nucleotide pyrophos 2e-25
cd00516 281 cd00516, PRTase_typeII, Phosphoribosyltransferase 2e-24
PRK06978 294 PRK06978, PRK06978, nicotinate-nucleotide pyrophos 2e-23
PRK06559 290 PRK06559, PRK06559, nicotinate-nucleotide pyrophos 7e-21
PRK09016 296 PRK09016, PRK09016, quinolinate phosphoribosyltran 6e-20
PRK06096 284 PRK06096, PRK06096, molybdenum transport protein M 1e-09
cd01573 272 cd01573, modD_like, ModD; Quinolinate phosphoribos 8e-09
TIGR01334 277 TIGR01334, modD, putative molybdenum utilization p 3e-08
pfam01729 169 pfam01729, QRPTase_C, Quinolinate phosphoribosyl t 2e-07
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase (carboxylating) Back     alignment and domain information 
 Score =  276 bits (707), Expect = 3e-94
 Identities = 119/155 (76%), Positives = 135/155 (87%)

Query: 34  GFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA 93
              + AI  PSHPTYD++ V+KLALAEDAGDRGDVTC+ATIP DME EA FLAK DG++A
Sbjct: 3   AEMAMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLA 62

Query: 94  GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 153
           GIALA+M+F EVDPSLKVEW+  DGD VHKGL+FGKV+G AHSI++AERVVLNFMQRMSG
Sbjct: 63  GIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSG 122

Query: 154 IATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 188
           IATLT+AMAD A PA ILETRKTAP LRL+DKWAV
Sbjct: 123 IATLTKAMADAAKPACILETRKTAPGLRLVDKWAV 157

Length = 308
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase Back     alignment and domain information
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase, N-terminal domain Back     alignment and domain information
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236017 PRK07428, PRK07428, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|235831 PRK06559, PRK06559, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase; Validated Back     alignment and domain information
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional Back     alignment and domain information
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport Back     alignment and domain information
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD Back     alignment and domain information
>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 188
COG0157 280 NadC Nicotinate-nucleotide pyrophosphorylase [Coen 100.0
PLN02716 308 nicotinate-nucleotide diphosphorylase (carboxylati 100.0
PRK06106 281 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK07428 288 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK06543 281 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK06559 290 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK06978 294 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK08072 277 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK06096 284 molybdenum transport protein ModD; Provisional 100.0
PRK05742 277 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK07896 289 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
TIGR01334 277 modD putative molybdenum utilization protein ModD. 100.0
PRK09016 296 quinolinate phosphoribosyltransferase; Validated 100.0
cd01572 268 QPRTase Quinolinate phosphoribosyl transferase (QA 100.0
cd01573 272 modD_like ModD; Quinolinate phosphoribosyl transfe 100.0
PRK08385 278 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
TIGR00078 265 nadC nicotinate-nucleotide pyrophosphorylase. Syno 100.0
PRK05848 273 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
cd01568 269 QPRTase_NadC Quinolinate phosphoribosyl transferas 100.0
KOG3008 300 consensus Quinolinate phosphoribosyl transferase [ 100.0
PRK08662 343 nicotinate phosphoribosyltransferase; Reviewed 100.0
cd01571 302 NAPRTase_B Nicotinate phosphoribosyltransferase (N 99.97
PF0274988 QRPTase_N: Quinolinate phosphoribosyl transferase, 99.96
cd00516 281 PRTase_typeII Phosphoribosyltransferase (PRTase) t 99.95
PRK07188 352 nicotinate phosphoribosyltransferase; Provisional 99.95
PRK09243 464 nicotinate phosphoribosyltransferase; Validated 99.13
cd01570 327 NAPRTase_A Nicotinate phosphoribosyltransferase (N 99.11
cd01567 343 NAPRTase_PncB Nicotinate phosphoribosyltransferase 98.88
TIGR01513 443 NAPRTase_put putative nicotinate phosphoribosyltra 98.62
PRK12484 443 nicotinate phosphoribosyltransferase; Provisional 98.55
COG1488 405 PncB Nicotinic acid phosphoribosyltransferase [Coe 98.52
PRK09198 463 putative nicotinate phosphoribosyltransferase; Pro 98.01
PLN02885 545 nicotinate phosphoribosyltransferase 97.75
cd01569 407 PBEF_like pre-B-cell colony-enhancing factor (PBEF 97.68
PHA02594 470 nadV nicotinamide phosphoribosyl transferase; Prov 97.6
cd01401 377 PncB_like Nicotinate phosphoribosyltransferase (NA 96.11
PRK05321 400 nicotinate phosphoribosyltransferase; Provisional 94.7
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 93.17
TIGR01514 394 NAPRTase nicotinate phosphoribosyltransferase. Thi 91.15
PF0783175 PYNP_C: Pyrimidine nucleoside phosphorylase C-term 89.98
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 89.87
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 89.24
PRK0674883 hypothetical protein; Validated 89.1
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 83.68
PF10011371 DUF2254: Predicted membrane protein (DUF2254); Int 82.48
PRK14875 371 acetoin dehydrogenase E2 subunit dihydrolipoyllysi 81.94
COG0508 404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 81.43
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 80.66
PRK05820440 deoA thymidine phosphorylase; Reviewed 80.03
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-48  Score=336.42  Aligned_cols=142  Identities=45%  Similarity=0.732  Sum_probs=137.4

Q ss_pred             ChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCeecCCC
Q 029760           46 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL  125 (188)
Q Consensus        46 ~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~~v~~G~  125 (188)
                      +...++..++.||.||+| +||+||+++++++.++++.+++||+||+||++++.++|+.+|++++++|+++||+++++|+
T Consensus         2 ~~~~~~~~v~~~L~ED~g-~gDiTt~al~~~~~~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~   80 (280)
T COG0157           2 PILLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGD   80 (280)
T ss_pred             chhhHHHHHHHHHHhhcC-CCCcccccccCCCCeEEEEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCC
Confidence            346789999999999999 7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760          126 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV  188 (188)
Q Consensus       126 ~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV  188 (188)
                      +|++++|+++.||++||++||||||+|||||+|++||++++  +++|+|||||+||+|.||||||
T Consensus        81 ~i~~~~G~a~~lL~~ER~aLN~L~~lSGIAT~T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV  145 (280)
T COG0157          81 VLAEIEGPARALLTAERTALNFLQHLSGIATATARMVEALRGTNVRIADTRKTTPGLRLLEKYAV  145 (280)
T ss_pred             EEEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCcEEEeccCCCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999995  6899999999999999999997

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) Back     alignment and domain information
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06096 molybdenum transport protein ModD; Provisional Back     alignment and domain information
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR01334 modD putative molybdenum utilization protein ModD Back     alignment and domain information
>PRK09016 quinolinate phosphoribosyltransferase; Validated Back     alignment and domain information
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed Back     alignment and domain information
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B Back     alignment and domain information
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09243 nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A Back     alignment and domain information
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase Back     alignment and domain information
>PRK12484 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PLN02885 nicotinate phosphoribosyltransferase Back     alignment and domain information
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like Back     alignment and domain information
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional Back     alignment and domain information
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB Back     alignment and domain information
>PRK05321 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase Back     alignment and domain information
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ] Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins Back     alignment and domain information
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>PRK05820 deoA thymidine phosphorylase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1x1o_A 286 Crystal Structure Of Project Id Tt0268 From Thermus 6e-23
3l0g_A 300 Crystal Structure Of Nicotinate-Nucleotide Pyrophos 7e-18
3gnn_A 298 Crystal Structure Of Nicotinate-Nucleotide Pyrophos 3e-17
3tqv_A 287 Structure Of The Nicotinate-Nucleotide Pyrophosphor 6e-17
3c2r_A 295 Crystal Structure Of The Quinolinate Phosphoribosyl 8e-15
3c2e_A 294 Crystal Structure At 1.9a Of The Apo Quinolinate Ph 8e-15
1qap_A 296 Quinolinic Acid Phosphoribosyltransferase With Boun 3e-14
1qpr_A 284 Quinolinate Phosphoribosyltransferase (Qaprtase) Fr 4e-13
3paj_A 320 2.00 Angstrom Resolution Crystal Structure Of A Qui 3e-12
1o4u_A 285 Crystal Structure Of A Nicotinate Nucleotide Pyroph 4e-10
2b7n_A 273 Crystal Structure Of Quinolinic Acid Phosphoribosyl 7e-09
2jbm_A 299 Qprtase Structure From Human Length = 299 3e-08
3lar_A 305 Crystal Structure Of Human Quinolinate Phosphoribos 3e-08
>pdb|1X1O|A Chain A, Crystal Structure Of Project Id Tt0268 From Thermus Thermophilus Hb8 Length = 286 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 58  LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 117
           L ED G +GD+T +  +P D+E EA  LAKE G++AG+ +AE +F   DP       + +
Sbjct: 22  LREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAE 80
Query: 118 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD--LAHPATILETRK 175
           G  V +G +  +V G    I+  ER+ LN +QR+SGIATLTRA  +      A IL+TRK
Sbjct: 81  GARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYVEALAGTKAQILDTRK 140
Query: 176 TAPTLRLLDKWAV 188
           T P LR L+K+AV
Sbjct: 141 TTPGLRALEKYAV 153
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a Resolution Length = 300 Back     alignment and structure
>pdb|3GNN|A Chain A, Crystal Structure Of Nicotinate-Nucleotide Pyrophosphorylase From Burkholderi Pseudomallei Length = 298 Back     alignment and structure
>pdb|3TQV|A Chain A, Structure Of The Nicotinate-Nucleotide Pyrophosphorylase From Francisella Tularensis. Length = 287 Back     alignment and structure
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl Transferase (Bna6) From Sachharomyces Cerevisiae Complexed With The Inhibitor Phthalate Length = 295 Back     alignment and structure
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate Phosphoribosyl Transferase (Bna6) From Saccharomyces Cerevisiae Length = 294 Back     alignment and structure
>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound Quinolinic Acid Length = 296 Back     alignment and structure
>pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From Mycobacterium Tuberculosis In Complex With Phthalate And Prpcp Length = 284 Back     alignment and structure
>pdb|3PAJ|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A Quinolinate Phosphoribosyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 Length = 320 Back     alignment and structure
>pdb|1O4U|A Chain A, Crystal Structure Of A Nicotinate Nucleotide Pyrophosphorylase (Tm1645) From Thermotoga Maritima At 2.50 A Resolution Length = 285 Back     alignment and structure
>pdb|2B7N|A Chain A, Crystal Structure Of Quinolinic Acid Phosphoribosyltransferase From Helicobacter Pylori Length = 273 Back     alignment and structure
>pdb|2JBM|A Chain A, Qprtase Structure From Human Length = 299 Back     alignment and structure
>pdb|3LAR|A Chain A, Crystal Structure Of Human Quinolinate Phosphoribosyltransferase Length = 305 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1x1o_A 286 Nicotinate-nucleotide pyrophosphorylase; transfera 2e-60
3tqv_A 287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 1e-59
3l0g_A 300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 3e-59
3gnn_A 298 Nicotinate-nucleotide pyrophosphorylase; decode bi 6e-59
1qpo_A 284 Quinolinate acid phosphoribosyl transferase; type 9e-59
1qap_A 296 Quinolinic acid phosphoribosyltransferase; glycosy 2e-56
3paj_A 320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 6e-56
2b7n_A 273 Probable nicotinate-nucleotide pyrophosphorylase; 1e-54
1o4u_A 285 Type II quinolic acid phosphoribosyltransferase; s 1e-52
2jbm_A 299 Nicotinate-nucleotide pyrophosphorylase; NAD, enzy 8e-51
3c2e_A 294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 1e-50
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} Length = 286 Back     alignment and structure
 Score =  188 bits (480), Expect = 2e-60
 Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 3/148 (2%)

Query: 43  PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIF 102
            +     L+  ++  L ED G  GD+T +  +P D+E EA  LAKE G++AG+ +AE +F
Sbjct: 7   EALWQGGLEEALRAWLREDLGQ-GDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVF 65

Query: 103 HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMA 162
              DP       + +G  V +G +  +V G    I+  ER+ LN +QR+SGIATLTRA  
Sbjct: 66  ALADPRTAFTPLVAEGARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYV 125

Query: 163 D-LAH-PATILETRKTAPTLRLLDKWAV 188
           + LA   A IL+TRKT P LR L+K+AV
Sbjct: 126 EALAGTKAQILDTRKTTPGLRALEKYAV 153
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Length = 287 Back     alignment and structure
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Length = 300 Back     alignment and structure
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Length = 298 Back     alignment and structure
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Length = 284 Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Length = 296 Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Length = 320 Back     alignment and structure
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Length = 273 Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Length = 285 Back     alignment and structure
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A Length = 299 Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
3l0g_A 300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 100.0
1x1o_A 286 Nicotinate-nucleotide pyrophosphorylase; transfera 100.0
3tqv_A 287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 100.0
1o4u_A 285 Type II quinolic acid phosphoribosyltransferase; s 100.0
3gnn_A 298 Nicotinate-nucleotide pyrophosphorylase; decode bi 100.0
3paj_A 320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 100.0
1qpo_A 284 Quinolinate acid phosphoribosyl transferase; type 100.0
2b7n_A 273 Probable nicotinate-nucleotide pyrophosphorylase; 100.0
2jbm_A 299 Nicotinate-nucleotide pyrophosphorylase; NAD, enzy 100.0
1qap_A 296 Quinolinic acid phosphoribosyltransferase; glycosy 100.0
3c2e_A 294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 100.0
2i14_A 395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 99.94
2i1o_A 398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 99.94
2f7f_A 494 Nicotinate phosphoribosyltransferase, putative; st 99.76
3os4_A 407 Naprtase, nicotinate phosphoribosyltransferase; st 98.02
4hl7_A 446 Naprtase, nicotinate phosphoribosyltransferase; st 97.62
1yir_A 408 Naprtase 2, nicotinate phosphoribosyltransferase 2 97.62
3dhf_A 484 Nicotinamide phosphoribosyltransferase; NMPRTASE, 97.25
2im5_A 394 Nicotinate phosphoribosyltransferase; structural g 97.12
1vlp_A 441 Naprtase, nicotinate phosphoribosyltransferase; st 96.81
1ybe_A 449 Naprtase, nicotinate phosphoribosyltransferase; st 96.61
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 87.68
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 87.19
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 87.18
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 86.22
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 85.66
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 85.32
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 84.0
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 83.71
2dsj_A423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 83.28
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 83.25
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 82.72
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 82.53
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 82.39
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 82.17
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 81.8
1brw_A433 PYNP, protein (pyrimidine nucleoside phosphorylase 81.1
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 81.01
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 80.81
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Back     alignment and structure
Probab=100.00  E-value=2.5e-47  Score=334.57  Aligned_cols=148  Identities=34%  Similarity=0.476  Sum_probs=135.6

Q ss_pred             cCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 029760           40 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD  119 (188)
Q Consensus        40 ~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l~~~l~v~~~~~DG~  119 (188)
                      -+||.+....++++|+.||+||+|.+||+||.++++.+. +++.|++|++||+||++++.++|+.+|++++++|+++||+
T Consensus        16 ~~~~~~~~~~~~~~i~~~L~ED~g~~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~   94 (300)
T 3l0g_A           16 TQGPGSMKISFSEIIHNALKEDLGDKGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGD   94 (300)
T ss_dssp             --------CCCHHHHHHHHHHHHTTTCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTC
T ss_pred             CCCCcchHHHHHHHHHHHHHhhCCCCCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            357777888899999999999999449999998999888 9999999999999999999999999999999999999999


Q ss_pred             eecCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhccC
Q 029760          120 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV  188 (188)
Q Consensus       120 ~v~~G~~il~v~G~a~~ll~aERv~LN~L~~~SGIAT~T~~~V~aa~--~~~I~~TRKT~PGlR~leKyAV  188 (188)
                      .|++|++|++++|++++||.+||++||||||+|||||+|++||++++  +++|+|||||+||+|.+|||||
T Consensus        95 ~v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~T~~~v~~~~~~~~~i~dTRKT~PGlR~lekyAV  165 (300)
T 3l0g_A           95 ITGKNSTLVSGEALAIYLLPIERVILNFIQHASGIASITRQFVDEVSGTKVKIRSTRKTTPGLRMLDKYSV  165 (300)
T ss_dssp             EECSSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred             EeeCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCccChhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999995  6999999999999999999996
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} Back     alignment and structure
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Back     alignment and structure
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Back     alignment and structure
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Back     alignment and structure
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Back     alignment and structure
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Back     alignment and structure
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae} Back     alignment and structure
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Back     alignment and structure
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Back     alignment and structure
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 188
d1qapa2122 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosylt 1e-31
d1qpoa2115 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosylt 2e-31
d1o4ua2103 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosylt 1e-21
d1o4ua1 170 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosy 1e-07
d1qapa1 167 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosy 1e-06
d1qpoa1 169 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosy 4e-06
d2i14a1 279 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyropho 5e-04
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  108 bits (272), Expect = 1e-31
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 48  YDLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE 104
            D+   V  AL ED G   D G+      +P D +  A  + +EDG+  G    E +F +
Sbjct: 13  LDIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQ 72

Query: 105 V-DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 153
           +    +++ W + DGD +H      ++ G A  ++  ER  LNF+Q +SG
Sbjct: 73  LAGDDVRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSG 122
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 115 Back     information, alignment and structure
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 103 Back     information, alignment and structure
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 167 Back     information, alignment and structure
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
d1qpoa2115 Quinolinic acid phosphoribosyltransferase (Nicotin 100.0
d1qapa2122 Quinolinic acid phosphoribosyltransferase (Nicotin 99.97
d1o4ua2103 Quinolinic acid phosphoribosyltransferase (Nicotin 99.97
d1ytda2119 Nicotinate phosphoribosyltransferase Ta1145 {Therm 98.95
d2i14a2110 Nicotinate-nucleotide pyrophosphorylase PF1904 {Py 98.9
d2f7fa2137 Putative nicotinate phosphoribosyltransferase EF26 97.59
d1uoua3105 Thymidine phosphorylase {Human (Homo sapiens) [Tax 94.45
d1brwa3103 Pyrimidine nucleoside phosphorylase {Bacillus stea 94.07
d2tpta3105 Thymidine phosphorylase {Escherichia coli [TaxId: 91.78
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 90.23
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 89.38
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 89.11
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 88.67
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 88.3
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 88.27
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 88.04
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 87.79
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 83.6
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 82.74
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 80.81
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.3e-34  Score=218.89  Aligned_cols=105  Identities=29%  Similarity=0.487  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHHhhcCCCC-CcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHHHc--CCCcEEEEEcCCCCeecCC
Q 029760           48 YDLKGVVKLALAEDAGDRG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG  124 (188)
Q Consensus        48 ~~~~~~i~~~L~ED~~~~g-DlTt~~l~~~~~~~~a~i~aKe~gVvaG~~~a~~if~~l--~~~l~v~~~~~DG~~v~~G  124 (188)
                      ..+++.|+.||+||+| +| |+||.++++++..++|.+++|++||+||++++..+|+.+  +++++++|+++||+.|++|
T Consensus         8 ~~~~~~i~~aL~EDlg-~g~DiTt~~li~~~~~~~A~i~ake~gVlaG~~~~~~if~~l~~~~~i~~~~~~~DG~~v~~G   86 (115)
T d1qpoa2           8 AAARAAIARGLDEDLR-YGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG   86 (115)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECTT
T ss_pred             HHHHHHHHHHHHccCC-CCCCcCchhhcCCCCeEEEEEEECCCCceehHHHHHHHHHHhccccccceeeecCCCCEEecc
Confidence            3578999999999999 66 999999999999999999999999999999999999987  6679999999999999999


Q ss_pred             CEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 029760          125 LQFGKVSGRAHSIVIAERVVLNFMQRMSG  153 (188)
Q Consensus       125 ~~il~v~G~a~~ll~aERv~LN~L~~~SG  153 (188)
                      ++|++++|++++||++||++|||||||||
T Consensus        87 ~~I~~i~G~a~~iL~~ER~~LN~lq~lSG  115 (115)
T d1qpoa2          87 EALMTLEAQTRGLLTAERTMLNLVGHLSG  115 (115)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEechHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999998
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure