Citrus Sinensis ID: 029781

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT
Secondary Structure (PSIPRED)
ccccccccHHHHccccccccccccccccccccccccccccEEEEccccHHHHHHHHcccccccccccccccccEEccccccccccEEEcccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccccccEcccccccccccccccccccccHHHHcccccEcccccccccEEEccccccccccEEEcccccHHHHHHHHHHccccccEEEcccccEEEEEEcHHHHEcccccccccccccEEEEEccccEEEEcccHHHHccccccccEEEEEccccccHHHHHcc
Coil and Loop (DISEMBL)
mssisipsclTLARLNAngvinsvphlqlpitvatpshlskrLRFFTVSREVKAFahngvgitnsvpprngtytvgdfmtkkedlhavKTTTTVDEALERLVEKRitgfpvidddwklvgvvsDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT
Flexible Loop (DISEMBL)
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFahngvgitnsvpprnGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEkritgfpvidddwklVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT
Low Complexity Region (SEG)
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT
Disordered region (IsUnstruct)
*****IPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIIS****
Disordered Region (DISOPRED)
********CLTLARL*********************************************************YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT
Disordered Region (DISEMBL)
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT
Disordered Region (DISPRO)
***ISIPSCLTLARLNANGVINSVPHLQLPITVATPS*********TVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANII**FLT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.398	0.317	0.831	1e-30
Q9C5D0	238	CBS domain-containing pro	no	no	0.505	0.399	0.639	3e-27
P42851	485	Inosine-5'-monophosphate	yes	no	0.409	0.158	0.325	0.0007

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 69/77 (89%)

Query: 62  ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGV 121
           +TNS  PR+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+
Sbjct: 64  MTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGL 123

Query: 122 VSDYDLLALDSISGSMR 138
           VSDYDLLALDSISGS R
Sbjct: 124 VSDYDLLALDSISGSGR 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 41  KRLRFFTVSREVKAF--AHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEAL 98
           +R   F+ S  V AF  A   V   NSVP +NG YTVGDFMT +++LH VK +T+VD+AL
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDAL 102

Query: 99  ERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
           E LVEK++TG PVIDD+W LVGVVSDYDLLALDSISG
Sbjct: 103 ELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISG 139

Arabidopsis thaliana (taxid: 3702)

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 59  GVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKL 118
           G+     +  R G  TV + MT+  ++  V  +  V+EAL+ ++E RI   PV+++D KL
Sbjct: 137 GIITKKDIAAREGR-TVKELMTR--EVITVPESVDVEEALKIMMENRIDRLPVVNEDGKL 193

Query: 119 VGVVSDYDLLALDSISGSMR 138
           VG+++  DL+A      ++R
Sbjct: 194 VGLITMSDLVARKKYKNAVR 213

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
225438783	246	PREDICTED: CBS domain-containing protein	0.595	0.455	0.611	3e-30
147802944	288	hypothetical protein VITISV_021555 [Viti	0.590	0.385	0.608	2e-29
357482805	224	Inosine-5'-monophosphate dehydrogenase [	0.478	0.401	0.736	4e-29
217075546	224	unknown [Medicago truncatula] gi|3884951	0.478	0.401	0.736	4e-29
15234564	236	cystathionine beta-synthase domain-conta	0.409	0.326	0.831	6e-29
388522595	222	unknown [Lotus japonicus]	0.404	0.342	0.828	8e-29
224056130	236	predicted protein [Populus trichocarpa]	0.537	0.427	0.679	1e-28
225428867	230	PREDICTED: CBS domain-containing protein	0.436	0.356	0.783	2e-28
296082380	172	unnamed protein product [Vitis vinifera]	0.393	0.430	0.837	2e-28
449443418	235	PREDICTED: CBS domain-containing protein	0.494	0.395	0.698	4e-28

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 83/121 (68%), Gaps = 9/121 (7%)

Query: 23  SVPHLQLPITV--------ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYT 74
           S PH Q+P T+           S +  R    +  R   A A  G  + NSVP +NG YT
Sbjct: 29  SFPH-QMPCTLLFQPGRKPPVGSTVGSRSERISGIRRSPALAAAGTLMANSVPSKNGVYT 87

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           VGDFMT+KEDLH VK TTTV+EALE LVE RITGFPVIDDDWKLVG+VSDYDLLALDSIS
Sbjct: 88  VGDFMTRKEDLHVVKATTTVEEALEILVENRITGFPVIDDDWKLVGLVSDYDLLALDSIS 147

Query: 135 G 135
           G
Sbjct: 148 G 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802944|emb|CAN64036.1| hypothetical protein VITISV_021555 [Vitis vinifera]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 82/120 (68%), Gaps = 9/120 (7%)

Query: 23  SVPHLQLPITV--------ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYT 74
           S PH Q+P T+           S +  R    +  R   A A  G  + NSVP +NG YT
Sbjct: 29  SFPH-QMPCTLLFQPGRKPPVGSTVGSRSERISGLRRSPALAAAGTLMANSVPSKNGVYT 87

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
           VGDFMT+KEDLH VK TTTV+EALE LVE RITGFPVIDDDWKLVG+VSDYDLLALDSIS
Sbjct: 88  VGDFMTRKEDLHVVKATTTVEEALEILVENRITGFPVIDDDWKLVGLVSDYDLLALDSIS 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482805|ref|XP_003611689.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] gi|355513024|gb|AES94647.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula]

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 74/91 (81%), Gaps = 1/91 (1%)

Query: 46  FTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKR 105
           F+  R    FA N +   NSVPP+NG YTVGDFMTKK++LH VK TTTVDEAL+ LVE R
Sbjct: 37  FSKLRGSPLFAANTL-TANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHR 95

Query: 106 ITGFPVIDDDWKLVGVVSDYDLLALDSISGS 136
           ITGFPVIDD+WKLVGVVSDYDLLALDSISG 
Sbjct: 96  ITGFPVIDDNWKLVGVVSDYDLLALDSISGQ 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075546|gb|ACJ86133.1| unknown [Medicago truncatula] gi|388495112|gb|AFK35622.1| unknown [Medicago truncatula]

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 74/91 (81%), Gaps = 1/91 (1%)

Query: 46  FTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKR 105
           F+  R    FA N +   NSVPP+NG YTVGDFMTKK++LH VK TTTVDEAL+ LVE R
Sbjct: 37  FSKLRGSPLFAANTL-TANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHR 95

Query: 106 ITGFPVIDDDWKLVGVVSDYDLLALDSISGS 136
           ITGFPVIDD+WKLVGVVSDYDLLALDSISG 
Sbjct: 96  ITGFPVIDDNWKLVGVVSDYDLLALDSISGQ 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 69/77 (89%)

Query: 62  ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGV 121
           +TNS  PR+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+
Sbjct: 64  MTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGL 123

Query: 122 VSDYDLLALDSISGSMR 138
           VSDYDLLALDSISGS R
Sbjct: 124 VSDYDLLALDSISGSGR 140

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522595|gb|AFK49359.1| unknown [Lotus japonicus]

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 67/76 (88%)

Query: 64  NSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
           NSVPP+NG YTVGDFMTK+EDLH VK TTTVDEALE LVE R+TGFPVIDD W LV VVS
Sbjct: 52  NSVPPKNGVYTVGDFMTKREDLHVVKPTTTVDEALEMLVEHRVTGFPVIDDKWNLVCVVS 111

Query: 124 DYDLLALDSISGSMRK 139
           DYDLLALDSISG+ RK
Sbjct: 112 DYDLLALDSISGNGRK 127

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056130|ref|XP_002298732.1| predicted protein [Populus trichocarpa] gi|222845990|gb|EEE83537.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/103 (67%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 35  TPSHLSKRLRFFTVSREV--KAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTT 92
           TP     RLR  +V R     + A     + NSVP R+G YTVGDFMTKKE L+ VK  T
Sbjct: 35  TPRSKCCRLRSSSVPRSPYRSSVAVALSTVANSVPARSGIYTVGDFMTKKEGLYVVKANT 94

Query: 93  TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
           TVDEALE LVEKRITGFPVIDDDW+LVGVVSDYDLLALDSISG
Sbjct: 95  TVDEALEALVEKRITGFPVIDDDWRLVGVVSDYDLLALDSISG 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428867|ref|XP_002285148.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Vitis vinifera] gi|297741249|emb|CBI32380.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 56  AHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD 115
           AH  +  TNSVP RNGTY VGDFMTKKE LH VK TT VDEALE LVEK+ITGFPVID+D
Sbjct: 53  AHAAI-TTNSVPHRNGTYRVGDFMTKKEHLHVVKPTTPVDEALEALVEKKITGFPVIDED 111

Query: 116 WKLVGVVSDYDLLALDSISGSMR 138
           WKLVG+VSDYDLLALDSISG  +
Sbjct: 112 WKLVGLVSDYDLLALDSISGGAQ 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082380|emb|CBI21385.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 67/74 (90%)

Query: 62  ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGV 121
           + NSVP +NG YTVGDFMT+KEDLH VK TTTV+EALE LVE RITGFPVIDDDWKLVG+
Sbjct: 1   MANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRITGFPVIDDDWKLVGL 60

Query: 122 VSDYDLLALDSISG 135
           VSDYDLLALDSISG
Sbjct: 61  VSDYDLLALDSISG 74

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443418|ref|XP_004139474.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 73/93 (78%)

Query: 46  FTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKR 105
           F   R+  + A +G  + NSVP   G Y VGDFMT+KE+LH VK TT+VDEALE LVEKR
Sbjct: 47  FPELRKSTSIAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKR 106

Query: 106 ITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR 138
           ITGFPVIDD+WKLVGVVSDYDLLALDSISG  R
Sbjct: 107 ITGFPVIDDNWKLVGVVSDYDLLALDSISGGGR 139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.691	0.550	0.572	4.2e-31
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.702	0.554	0.542	1.2e-28
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.265	0.238	0.528	4.5e-05
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.265	0.238	0.528	4.5e-05

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 79/138 (57%), Positives = 94/138 (68%)

Query:     5 SIPSCLTLARLNANGVINSVPHLQLPITVAT-PSHLSKRLRFFTVSREVKAFAHNGVG-- 61
             S+P   T  R +++    S P+L LP  ++  P H     R F     + + A +  G  
Sbjct:     7 SVPLSFTPLRASSSP---SSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPS-ASSAAGST 62

Query:    62 -ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVG 120
              +TNS  PR+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG
Sbjct:    63 LMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVG 122

Query:   121 VVSDYDLLALDSISGSMR 138
             +VSDYDLLALDSISGS R
Sbjct:   123 LVSDYDLLALDSISGSGR 140

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 77/142 (54%), Positives = 98/142 (69%)

Query:     1 MSSISIPSCLTLARLNANGVINSVPHLQ-LPITVATPS--HLSKRLRF--FTVSREVKAF 55
             M SIS+ + + + RL    ++ S+ H   LPI+ ++ S   LS R R   F+ S  V AF
Sbjct:     1 MGSISLSNSMPITRLP---LLTSLYHQSFLPISSSSFSLLPLSNRRRSSTFSPSITVSAF 57

Query:    56 --AHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID 113
               A   V   NSVP +NG YTVGDFMT +++LH VK +T+VD+ALE LVEK++TG PVID
Sbjct:    58 FAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVID 117

Query:   114 DDWKLVGVVSDYDLLALDSISG 135
             D+W LVGVVSDYDLLALDSISG
Sbjct:   118 DNWTLVGVVSDYDLLALDSISG 139

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 113 (44.8 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:    75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
             V D MT+  +L  VK+T T+ EA+ +  EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMTR--ELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 113 (44.8 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 28/53 (52%), Positives = 36/53 (67%)

Query:    75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
             V D MT+  +L  VK+T T+ EA+ +  EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMTR--ELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       188   0.00087  110 3  11 22  0.41    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.33u 0.10s 17.43t   Elapsed:  00:00:01
  Total cpu time:  17.33u 0.10s 17.43t   Elapsed:  00:00:01
  Start:  Tue May 21 00:17:04 2013   End:  Tue May 21 00:17:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019540001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023053001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa)	•						•		0.707
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)	•								0.556
	GSVIVG00000640001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)	•								0.553
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)							•		0.474

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
pfam00571	57	pfam00571, CBS, CBS domain	6e-13
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	7e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-09
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-09
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	4e-09
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	9e-09
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	3e-08
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-08
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	5e-08
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	6e-08
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	6e-08
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	1e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	1e-07
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	4e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	5e-07
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	5e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	5e-07
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	7e-07
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	8e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	1e-06
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	1e-06
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-06
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	1e-06
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-06
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	3e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	3e-06
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	3e-06
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	4e-06
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	4e-06
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	5e-06
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	7e-06
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	7e-06
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	8e-06
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-05
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-05
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-05
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-05
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	1e-05
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-05
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	2e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	2e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	2e-05
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	3e-05
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	3e-05
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	4e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	7e-05
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	8e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	9e-05
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	1e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	1e-04
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-04
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	2e-04
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	2e-04
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	3e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	3e-04
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	3e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-04
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	3e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	3e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	5e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	6e-04
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	6e-04
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	6e-04
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	7e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	8e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	9e-04
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	0.001
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	0.001
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.001
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	0.001
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	0.001
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.001
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	0.002
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	0.002
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	0.004
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	0.004
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	0.004

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 60.3 bits (147), Expect = 6e-13
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D MT   D+  V   T+++EALE + E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTP--DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 54.0 bits (130), Expect = 7e-10
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D MTK  D+  VK  T+V +AL  + E  ++  PV+DD  KLVG++++ D+L
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDIL 51

Length = 117

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           TVGD MT+  D+  V   T+++EA E ++E  I   PV+DD+ +LVG+V+  D+L
Sbjct: 59  TVGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            D+  V    TV EAL  ++E  I+G PV+DDD +LVG+V++ DLL
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D MT+  D   V    +V+EA E ++E++I+G PV+DD  +LVG++++ DL 
Sbjct: 68  KVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.0 bits (123), Expect = 9e-09
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +        +V EA+E+L++ +I+G PV+DD+  LVG +S+ D L
Sbjct: 2   NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 49  SREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITG 108
                   ++ + +  S   +     V + MTKK  +  V   TT+++    + +K I  
Sbjct: 54  GLFYVTLLYSVIFLDESKIKKLLGKKVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKR 111

Query: 109 FPVIDDDWKLVGVVSDYDLL 128
            PV+DD  KLVG++S  D++
Sbjct: 112 LPVVDDG-KLVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V   MT+  ++  +    ++ +A E ++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 49.1 bits (118), Expect = 5e-08
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 92  TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           T+V EA   +++  I+G PV+DDD +LVG+VS+ DLL
Sbjct: 11  TSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL 47

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 17/46 (36%), Positives = 33/46 (71%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +D+  VK   T+ + +E L+  +I+G PV+D++ ++VG+VS+ DL+
Sbjct: 1   KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 46.7 bits (112), Expect = 6e-08
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V   TT++EALE L E  I   PV+D++ +LVG+V+  D++
Sbjct: 5   VSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 30/111 (27%), Positives = 46/111 (41%)

Query: 18  NGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD 77
           +G I     +    TVA    L +R     V          G+    +    +    V  
Sbjct: 86  SGFITDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDIDFLSKVSV 145

Query: 78  FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            MT  EDL       T++EA E L E +I   P++DDD +LVG+++  D+ 
Sbjct: 146 VMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           V   MT  EDL        +++  E +++ R   +PV+D+D K+VGV+S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 65  SVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVE-KRITGFPVIDDD-WKLVGVV 122
                     V + MTK   +  V   T ++EALE +VE  +I   PV+DDD  KLVG++
Sbjct: 54  LAAGGKRLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGII 111

Query: 123 SDYDLL 128
           +  D+L
Sbjct: 112 TLSDIL 117

Length = 117

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV 122
            V + MTK E L  V   TT++EALE L E RI   PV+DD+ +L G++
Sbjct: 148 PVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +  TTT+ EALE + E +I   PV+D++ +LVG+V+D DL 
Sbjct: 6   ITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR 46

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D+M+   D+  V   T + E  E +VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEVQELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.0 bits (110), Expect = 5e-07
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           TVGD MT    +  V     VDEA   + E ++   PV+DDD +LVG+VS  DL 
Sbjct: 59  TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 45.5 bits (109), Expect = 7e-07
 Identities = 22/40 (55%), Positives = 28/40 (70%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
           V    TV EALE + E  I+G PV+DDD KLVG+V++ DL
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 45.5 bits (109), Expect = 8e-07
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV 122
            +    V + MT + +L      T+++EALE L E +I   PV+DD+ KL G++
Sbjct: 50  TDLDKPVSEVMTPE-NLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V + MTK  D+  V    TV+EA   + E RI   PV++D  +LVG++++ DLL
Sbjct: 68  PVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDG-RLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           V + MT+ E++  V     ++EAL+ L E RI   PV+D + +LVG+++  D++ 
Sbjct: 145 VSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
            V + MT   ++  V    TVDEA+  + E+R    PV+D   KLVG+VS
Sbjct: 60  PVSEIMT--RNVITVTPDDTVDEAMALMTERRFRHLPVVDGG-KLVGIVS 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
            V D MT+  +   +       EALE + E +IT  PV+DD+ + VGV+  +DLL 
Sbjct: 60  PVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
               MT+  D   V   T VDEA + L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           R G  T  D M++  D+  V T T++D A + L E RI   PV+D+  +LVG+V+  DLL
Sbjct: 241 RMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL 298

Length = 382

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
            +  +    ++ +A E + E RI   PV+++D KLVG+++  DLL 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDS 132
           TV D MT  ED   ++ T TV++ L+ + +   + FPV++   K+VGVV+  D+L    S
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPS 248

Query: 133 IS 134
            +
Sbjct: 249 TT 250

Length = 432

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
            V + M+KK  L  V+   T+ EA +   EK I G PV+DDD K+VG+++  D+   
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKA 226

Length = 294

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           E++  V    T D+ LE L E +++G PV+    +LVG+++  DLL
Sbjct: 1   ENVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D MT    +  ++  T+V +    ++E  I G PV+DD  KLVG+V+  D+L
Sbjct: 69  VSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG-KLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
                ++ D M   ED+  V+   ++ + L  ++++     PV+D+D KLVG+++
Sbjct: 50  YKEAKSLEDIM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 70  NGTYTVGDFMTKKEDLHAVKTTT---TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYD 126
               +V D MT+      V T T    +D A  ++    I+  PV+D + +++G+++  D
Sbjct: 52  RDKKSVEDIMTRN-----VITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSED 106

Query: 127 LLAL 130
           +  L
Sbjct: 107 ISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131
           +  V + MT +E L    T  +++EA E L E R    P+++D+ +LV +VS  DL    
Sbjct: 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217

Length = 495

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 27/40 (67%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
           +    ++ EA + ++E+ I   PV+D+D +LVG+V+ +D+
Sbjct: 7   ISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDI 46

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 31/47 (65%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
           ++   +  T + + L+ LVE+R++  P++D++ K+V V S +D++ L
Sbjct: 2   NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           D+  V   T+++EA   L   RI   PV+D D +LVG+V+  DLL 
Sbjct: 3   DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLR 48

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           TVGD M+    +  V+  T + E +  L +      PV+D+D +LVG+V+  DL+A
Sbjct: 70  TVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALD 131
           TV + MT + D+ A+  T TV+E +E ++E   +  PV D D   ++G+V   DLL   
Sbjct: 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRAL 265

Length = 429

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
            D   V   TT+ EAL  +    I+G PV+D++ KLVG++++ D+
Sbjct: 95  TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDV 139

Length = 486

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDS 132
           +  TT + EA E+L+E +     V+D D  +VG+++  DLL AL++
Sbjct: 6   LSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEA 51

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
                T+ +A   L E +I+G PV+D   KLVG+VS+ D+L L
Sbjct: 6   CNADDTISDAARLLRENKISGAPVLDGG-KLVGIVSESDILKL 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D MTKK  +  +    ++++A E +V  +I   PV++D  +LVG+V+  D++
Sbjct: 91  VRDIMTKK--VITISPDASIEDAAELMVRHKIKRLPVVEDG-RLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
            V D MT+   +  V   T + E  E + E RI   PV+    +LVG+VS  DLL 
Sbjct: 82  KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGG-RLVGIVSRADLLR 134

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 16/112 (14%)

Query: 33  VATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPP----------------RNGTYTVG 76
           +  PS LS       V    +    +G+ +T                      +    + 
Sbjct: 1   ITDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLS 60

Query: 77  DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           + MT +E L    T  T++EA E L E +    P+++DD +LV +V+  DL 
Sbjct: 61  EVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
            VG+ M+    L  V   T++ +A + + E  I    V+DDD +L+G++S  DLL 
Sbjct: 57  PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           D+  V    TVDE L  +  +R  G+PV+DD  +LVG+V+  D+  
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG-RLVGIVTLADIRR 46

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV--SDYD 126
           V DFMT  E L      TT+ EA + + + ++   P++D +  LV +V   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            D+ +V    TV +A+ER+ E  ++  PV+DD  ++VG + + DLL
Sbjct: 1   GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG-RVVGSIDESDLL 45

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
           TV   MT    L  V +  ++ E L+ L E+ +    V++D  +++G++++ DLL  
Sbjct: 58  TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
            T ++E L+ +       FPV+DDD +LVG+VS  D+  +
Sbjct: 9   DTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI 48

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V + M    D+  V   T + EA E +VE +I   PV+DD   LVG+++  D L
Sbjct: 68  PVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 87  AVKTTTTVDEALERL-----VEKRITGFPVIDDDWKLVGVVSDYDLL 128
           AV+   TV EALE L       + I    V+D++ +L+GVVS  DLL
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL 47

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V+ T T+  AL  L +   +  PV+D + K VG +S  D+L
Sbjct: 6   VQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           D+  V+   TV EA + + EK I    V+DD  +LVG+ S+ D++
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIV 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131
           D+  V    TV + ++ + E    GFPV+D+  K+VG+VS  DLL  D
Sbjct: 3   DVITVSPDNTVKDVIKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKD 49

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
            V   MT         + T V EAL  +V+ +    PV+D   ++VG++ 
Sbjct: 59  LVERVMTPNPVC--ATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA-------LDSISG 135
           + L  +    T+ EA        I G PV+DD  KLVG+V+  D+         L  +  
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDG-KLVGIVTLSDIAHAIARGLELAKVKD 59

Query: 136 SMRK 139
            M K
Sbjct: 60  VMTK 63

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 28/44 (63%)

Query: 85  LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +++V    ++  A+E ++E  I   PV+++  +LVG+V  +D+L
Sbjct: 77  VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
            V + MT       +    TV EAL  ++E+ I   PV+DD  +LVGV+S  DLL L
Sbjct: 58  PVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDDG-RLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
            + ++ +   V +A + + +  I+G PV+D+  KL+G +S  DL
Sbjct: 2   KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDL 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 68  PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
            R  T  VGD MT   D        T+ +AL+R+ E+ I   PV+DD  +LVG+VS  DL
Sbjct: 51  GREATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

Query: 128 L 128
           L
Sbjct: 109 L 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 83  EDLHAVKTTTTVDEALERLVE-KRITGFPVIDDDWKLVGVVSDYDLLAL 130
                V   TTV++ LER      ++   V+DD  + VG++    L+ L
Sbjct: 1   RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG-RPVGLIMREALMEL 48

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            VG+ M+    L  +    +++EA + + +  I   PV+DDD +LVG+V+  D++
Sbjct: 59  PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
           ++   V   T++ EAL+ + E  I   PV+D   KLVG+V+D DL
Sbjct: 1   KNPITVTPDTSLMEALKLMKENSIRRLPVVDRG-KLVGIVTDRDL 44

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 79  MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           +    D   V     V EA + +VE  I   PV+DD  KLVG+V+  D++ 
Sbjct: 56  LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 39.0 bits (92), Expect = 9e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
            V D    K     V   T++ EA   + E  +   PV+D++ KL+G+VS  DL
Sbjct: 69  QVRDLEIDK--PVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 83  EDLHAVKTTTTVDEALERLVEKR--ITGFPVIDDDWKLVGVVSDYDL 127
           + L  V   T++ +AL  +  K   +T   V+D+D +LVG+ +D DL
Sbjct: 2   DALPLVSPDTSLKDALLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL 46

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 71  GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           G  T  D + K E +      TTV E  +++   RI   P+I+ + KL+G++ D+DLL
Sbjct: 38  GIITERDLIAKSE-VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
              D MT  E++  V     V +A + ++E  I+G PV+D+D  +VGV++  D+   
Sbjct: 82  VAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDND-NIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 86  HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK 139
             V   T +  A+  +        PV+DD  +LVG+++ YD+L+    S  ++ 
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKD 57

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           ED   + TT TV +  E   E   + FPV+D+  K+VG+V+  D+ 
Sbjct: 2   EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA 47

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 94  VDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
             +A E L++++IT  PV+D++ KL G ++  D 
Sbjct: 282 AIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315

Length = 321

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           TV D MT   ++  V    ++ +  + +++ +   +PV+DD  KLVG +S  D+L 
Sbjct: 61  TVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDG-KLVGQISRRDVLR 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLL 128
           T G  MT  E +  +    TVDEAL+R+ E+      I    V+D+  KL+GVVS  DLL
Sbjct: 133 TAGRIMTT-EFV-TLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190

Length = 451

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLA 129
              D MTK      V    ++++AL++  +      PV+DDD  KL+G++S  DLL+
Sbjct: 59  VASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV 122
            V D M    D+ +V      +E      +  +   PV+D++ +LVG++
Sbjct: 54  PVSDIM--DTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGII 100

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALD 131
           D+ A+    T++E LE + E   + FPV D D   ++GVV   DLL   
Sbjct: 2   DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRAL 50

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
COG2524	294	Predicted transcriptional regulator, contains C-te	99.72
COG2524	294	Predicted transcriptional regulator, contains C-te	99.66
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.59
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.57
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.57
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.56
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.56
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.54
COG3620	187	Predicted transcriptional regulator with C-termina	99.53
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.53
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.5
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.5
COG4109	432	Predicted transcriptional regulator containing CBS	99.5
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.5
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.49
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.49
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.49
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.47
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.47
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.47
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.47
COG3620	187	Predicted transcriptional regulator with C-termina	99.47
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.46
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.46
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.46
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.46
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.46
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.45
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.45
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.45
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.45
PRK11573	413	hypothetical protein; Provisional	99.44
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.44
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.44
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.44
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.44
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.44
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.43
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.43
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.43
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.43
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.43
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.43
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.43
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.42
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.42
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.42
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.42
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.42
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.42
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.42
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.42
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.42
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.41
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.41
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.41
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.41
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.4
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.4
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.4
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.4
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.4
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.4
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.4
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.4
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.4
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.4
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.4
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.4
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.4
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.4
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.4
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.4
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.39
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.39
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.39
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.39
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.39
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.39
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.39
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.39
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.39
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.39
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.39
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.39
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.39
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.39
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.39
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.39
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.38
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.38
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.38
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.38
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.38
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.38
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.38
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.38
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.37
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.37
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.37
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.36
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.36
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.35
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.35
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.35
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.34
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.34
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.34
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.34
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.34
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.34
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.34
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.33
COG2905	610	Predicted signal-transduction protein containing c	99.33
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.33
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.33
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.33
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.33
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.33
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.33
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.32
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.32
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.32
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.32
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.32
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.31
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.31
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.31
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.3
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.3
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.3
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.29
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.29
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.29
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.29
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.29
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.28
COG0517	117	FOG: CBS domain [General function prediction only]	99.27
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.27
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.27
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.27
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.26
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.26
COG2905	610	Predicted signal-transduction protein containing c	99.26
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.26
COG4109	432	Predicted transcriptional regulator containing CBS	99.26
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.25
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.25
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.25
COG0517	117	FOG: CBS domain [General function prediction only]	99.24
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.24
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.24
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.23
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.23
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.23
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.22
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.22
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.22
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.21
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.21
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.2
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.2
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.2
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.19
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.19
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.19
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.17
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.16
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.14
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.14
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.08
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.07
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.04
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.98
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.97
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.97
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.92
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.89
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.85
PRK11573	413	hypothetical protein; Provisional	98.78
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.7
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.69
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.67
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.63
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.63
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.41
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.37
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.25
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.21
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.09
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.06
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.99
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.96
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.6
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	97.39
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.33
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.13
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.02
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.26
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.12
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.9
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	95.32
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	93.15
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	93.04
KOG2118	498	consensus Predicted membrane protein, contains two	88.94
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	81.16

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.72  E-value=4.4e-17  Score=121.70  Aligned_cols=113  Identities=24%  Similarity=0.242  Sum_probs=106.7

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN  149 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (188)
                      .+..++.++|++  +++++.+++++.++..+|.+++++..||+|+ ++++|++|..|+..+.++......++++|.+.++
T Consensus       169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~vi  245 (294)
T COG2524         169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAKVSDYMRKNVI  245 (294)
T ss_pred             cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccccHHHHhccCCc
Confidence            456789999999  9999999999999999999999999999995 5999999999999999988888889999999888


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                       ++.++.+.+++++|..++++.++|++ ++.+.|+||+
T Consensus       246 tI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITr  283 (294)
T COG2524         246 TINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITR  283 (294)
T ss_pred             eEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEeh
Confidence             99999999999999999999999998 8999999986

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.66  E-value=2e-16  Score=118.26  Aligned_cols=102  Identities=21%  Similarity=0.247  Sum_probs=91.6

Q ss_pred             cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      -.|+.+|+++|.++++++.||+|+++++  +|..|+....                       .....+.+|+++|.+  
T Consensus       188 d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~ai-----------------------a~g~~~~kV~~~M~k--  242 (294)
T COG2524         188 DDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAI-----------------------ANGNLDAKVSDYMRK--  242 (294)
T ss_pred             CccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHH-----------------------HcCCccccHHHHhcc--
Confidence            4689999999999999999999988999  9999987422                       123457899999999  


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +++++.+++.+.||+++|..+++.++.|+|.+|+++|+||+.|++..++
T Consensus       243 ~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         243 NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            9999999999999999999999999999999999999999999997654

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.59  E-value=1.7e-14  Score=113.35  Aligned_cols=117  Identities=18%  Similarity=0.245  Sum_probs=101.0

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccC
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFG  147 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~  147 (188)
                      .....+++++|+++.++.+++.+.++.++++.+.+++++++||++++ ++++|+++.+|++...........+.++|.+.
T Consensus        63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~~  142 (292)
T PRK15094         63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQA  142 (292)
T ss_pred             ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCCC
Confidence            45678999999987678999999999999999999999999999865 78999999999996553322233467888888


Q ss_pred             cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +.++++.++.++++.|.+++.+.++|+++ +.+.|+||.
T Consensus       143 ~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTl  181 (292)
T PRK15094        143 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTI  181 (292)
T ss_pred             cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEH
Confidence            78999999999999999999999999986 789999984

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.57  E-value=2.3e-14  Score=117.46  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=100.8

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccC
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFG  147 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~  147 (188)
                      ...+.+++|+|+|+.++.+++.++++.++++.+.+++++++||++++ ++++|+++.+|++.....  ....+.+++.++
T Consensus       187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--~~~~l~~~~~~~  264 (408)
T TIGR03520       187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--KNFDWQSLLREP  264 (408)
T ss_pred             ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--CCCCHHHHcCCC
Confidence            45678999999998789999999999999999999999999999864 689999999999975432  223357788887


Q ss_pred             cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ..++++.++.++++.|.+++.+.++|+|+ |.+.|+||-
T Consensus       265 ~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~  303 (408)
T TIGR03520       265 YFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTL  303 (408)
T ss_pred             eEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEH
Confidence            77999999999999999999999999997 899999983

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.57  E-value=1.3e-14  Score=97.94  Aligned_cols=99  Identities=19%  Similarity=0.137  Sum_probs=84.1

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|.+.|.+++.+.+||+| +|+++  ++..|+.+..                       .......++.++|.. 
T Consensus         9 ~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~-----------------------~~~~~~~~v~~~~~~-   64 (111)
T cd04603           9 ENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIG-----------------------PNDYETLKVCEVYIV-   64 (111)
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhc-----------------------cccccccChhheeec-
Confidence            35788999999999999999999 78888  9999987310                       011123468899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        65 -~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          65 -PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             -CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence             8889999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.56  E-value=8.7e-14  Score=93.91  Aligned_cols=102  Identities=17%  Similarity=0.101  Sum_probs=86.5

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+.........++.++|..... +.+++++.+++++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~   81 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRI   81 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHHH
Confidence            467899999999999999999999999999889999999999998754322223446777866556 8999999999999


Q ss_pred             HhccCceEEEEEeC-CEeeceeec
Q 029781          163 VGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      |.+++...+||+++ +.+.|++|.
T Consensus        82 m~~~~~~~lpVvd~~~~~~Giit~  105 (111)
T cd04603          82 FRETEPPVVAVVDKEGKLVGTIYE  105 (111)
T ss_pred             HHHcCCCeEEEEcCCCeEEEEEEh
Confidence            99999999999975 899999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.56  E-value=3.9e-14  Score=113.20  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc--CcccccccccccCc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS--GSMRKLGFNLYFGF  148 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--~~~~~~~~~~~~~~  148 (188)
                      ...+++++|.+.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+.+.....  +...++.++|.+.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~  279 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGG  279 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence            5678999998533688999999999999999999888888889889999999999998765432  22346788898766


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      . +.+++++.++++.|.+++.+.+||++++.+.|++|.
T Consensus       280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~  317 (326)
T PRK10892        280 IRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHM  317 (326)
T ss_pred             EEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEh
Confidence            6 999999999999999999999999999999999985

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=2.4e-14  Score=97.10  Aligned_cols=103  Identities=15%  Similarity=0.207  Sum_probs=86.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-.++.+|++.|.+++...+||+| +|+++  ++.+|+.+...                    .........++.++|..
T Consensus         8 ~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~--------------------~~~~~~~~~~v~~~~~~   67 (114)
T cd04619           8 VNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG--------------------RCGGPGCTAPVENVMTR   67 (114)
T ss_pred             CCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh--------------------hcCCCcccCCHHHHhcC
Confidence            456899999999999999999999 88998  99999873110                    00112335678999988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+.+|+++
T Consensus        68 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          68 --AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             --CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence              8999999999999999999999999999998889999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.53  E-value=3.8e-14  Score=98.83  Aligned_cols=111  Identities=16%  Similarity=0.193  Sum_probs=93.9

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---cccccccccccC
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLYFG  147 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~~  147 (188)
                      ...+++.+|+.  +++.+.+++++.++.++|.+++++++||+++ |+++|-||..++.++.-+..   ....+.++|..+
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~  139 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEP  139 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCC
Confidence            45788999999  9999999999999999999999999999985 89999999999998764432   133478899988


Q ss_pred             cc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeecc
Q 029781          148 FN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSF  186 (188)
Q Consensus       148 ~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~~  186 (188)
                      ++ ++++.++..+.+++..++ . +.|+++|.+.||||.+
T Consensus       140 fP~Vs~~~~l~vI~~LL~~~~-A-VlV~e~G~~vGIITk~  177 (187)
T COG3620         140 FPTVSPDESLNVISQLLEEHP-A-VLVVENGKVVGIITKA  177 (187)
T ss_pred             CCcCCCCCCHHHHHHHHhhCC-e-EEEEeCCceEEEEeHH
Confidence            88 999999998888777433 3 3566999999999964

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.53  E-value=5.3e-15  Score=112.76  Aligned_cols=115  Identities=27%  Similarity=0.295  Sum_probs=99.9

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-------cccccc
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-------SMRKLG  141 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-------~~~~~~  141 (188)
                      .....+..++|++  +++++..++++.+|.+.|.+|+++.+||+|++.+++|++|.+|+.+......       ....+.
T Consensus       241 ~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk  318 (382)
T COG3448         241 RMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVK  318 (382)
T ss_pred             HhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCccc
Confidence            3457789999999  9999999999999999999999999999999999999999999997443211       223478


Q ss_pred             cccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          142 FNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       142 ~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+|.+++. +.++++..++.-++.+.+.+.+||+| ++.+.||||-
T Consensus       319 ~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQ  364 (382)
T COG3448         319 GIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQ  364 (382)
T ss_pred             ccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeH
Confidence            88986665 99999999999999999999999998 5899999983

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.50  E-value=1.3e-13  Score=92.38  Aligned_cols=96  Identities=24%  Similarity=0.334  Sum_probs=84.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+++.+|.+.|.+++...+||+| +|+++  ++.+++...                           ....++.++|..
T Consensus         9 ~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~---------------------------~~~~~v~~~~~~   61 (108)
T cd04596           9 TTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK---------------------------DPDTTIEKVMTK   61 (108)
T ss_pred             CCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc---------------------------cccccHHHHhcC
Confidence            446789999999999999999999 78888  999897621                           123478899988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++++++++.++++.|.+++...+||++++|+++|++|..|+++
T Consensus        62 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          62 --NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             --CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence              8899999999999999999999999999998899999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=4.1e-13  Score=90.98  Aligned_cols=102  Identities=16%  Similarity=0.113  Sum_probs=86.8

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc---cCcccccccccccCcc-cCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI---SGSMRKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      .+.++.+++++.++++.|.+++...+||+|++|+++|+++..|+.+....   .....++.++|..... +.+++++.++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   81 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV   81 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence            36788999999999999999999999999988999999999999875543   2233456777765555 8999999999


Q ss_pred             HHHHhccCceEEEEEeC-CEeeceeec
Q 029781          160 LKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ++.|.+++...+||+++ +.+.|+++.
T Consensus        82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~  108 (114)
T cd04619          82 WQVMKQRGLKNIPVVDENARPLGVLNA  108 (114)
T ss_pred             HHHHHHcCCCeEEEECCCCcEEEEEEh
Confidence            99999999999999985 789999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.50  E-value=2.2e-13  Score=106.21  Aligned_cols=99  Identities=19%  Similarity=0.238  Sum_probs=90.5

Q ss_pred             ccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            7 PSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      +++.+..++..+.++++|||+| ..+++  +|.+|+.                           ...+..++..+|++  
T Consensus       207 d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~---------------------------~~~~~t~ieKVMtk--  257 (432)
T COG4109         207 DTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL---------------------------DKKPSTTIEKVMTK--  257 (432)
T ss_pred             ccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh---------------------------cCCCCccHHHHhcc--
Confidence            6788999999999999999999 77888  9999987                           34557899999999  


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS  134 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~  134 (188)
                      +|+++.+.+++..+.+.|...+++.+||+|++.+++|+||++|+++.++..
T Consensus       258 np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~  308 (432)
T COG4109         258 NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI  308 (432)
T ss_pred             CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999887643

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=3.8e-13  Score=89.04  Aligned_cols=88  Identities=18%  Similarity=0.129  Sum_probs=78.3

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (188)
                      .+.++++++++.++.+.|.+++.+.+||+|++ |+++|++|..|+.+...              ...+.+++++.+++++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~--------------~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------------LVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee--------------eEEeCCCCcHHHHHHH
Confidence            57899999999999999999999999999974 79999999999987542              3348899999999999


Q ss_pred             HhccCceEEEEEeC--CEeeceeec
Q 029781          163 VGGINCGFLLTVEG--AMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~--~~~~giit~  185 (188)
                      |.+++.+.+||+++  +.+.|++|.
T Consensus        68 m~~~~~~~lpVvd~~~~~~~giit~   92 (98)
T cd04618          68 LLKNKIHRLPVIDPSTGTGLYILTS   92 (98)
T ss_pred             HHHCCCCEeeEEECCCCCceEEeeh
Confidence            99999999999984  689999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.49  E-value=1.3e-13  Score=105.23  Aligned_cols=109  Identities=28%  Similarity=0.260  Sum_probs=91.9

Q ss_pred             ccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            7 PSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      .|+.+|.++|.+++++.+||+| +.+++  +|.+|+.+...+  .+ ..+             .......+++.+|++  
T Consensus       262 ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~--~p-~qr-------------lr~~~~~~vk~imt~--  323 (382)
T COG3448         262 TSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP--SP-FQR-------------LRFLRPPTVKGIMTT--  323 (382)
T ss_pred             CChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc--ch-HHH-------------hhccCCCcccccccC--
Confidence            5788999999999999999999 77888  999999964433  00 101             012345689999999  


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      ++.++.++++..+++-.+.+.+.+.+||+|++|+++||||..|++.++..
T Consensus       324 ~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         324 PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999977643

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.49  E-value=2.3e-13  Score=108.57  Aligned_cols=112  Identities=17%  Similarity=0.052  Sum_probs=97.8

Q ss_pred             CcccccccccCCC--eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-CcccccccccccCc
Q 029781           72 TYTVGDFMTKKED--LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGF  148 (188)
Q Consensus        72 ~~~v~~im~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~  148 (188)
                      ..+|+++|.+  +  +.++++++++.++.+.|.+++...+||+|++|+++|+|+..|+.+..... .....+.++|.+.+
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            5789999998  7  89999999999999999999999999999889999999999998755432 23345778888766


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      . +.+++++.++++.|.+++...+||++ ++.+.|+||.
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~  312 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINL  312 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence            6 89999999999999999999999998 4789999985

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6e-13  Score=90.91  Aligned_cols=102  Identities=21%  Similarity=0.317  Sum_probs=82.8

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc---cccc------cccc-CcccCCc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR---KLGF------NLYF-GFNSGNA  153 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~---~~~~------~~~~-~~~~~~~  153 (188)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|++.+....+...   .+.+      .|.. ...+.++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   81 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD   81 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence            6789999999999999999999999999998899999999999997654332211   1111      1222 2348899


Q ss_pred             chHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          154 YFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       154 ~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +++.++++.|.+++.+.+||+++ +.+.|++|.
T Consensus        82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~  114 (120)
T cd04641          82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISL  114 (120)
T ss_pred             CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEH
Confidence            99999999999999999999986 789999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.47  E-value=2.5e-13  Score=93.09  Aligned_cols=112  Identities=26%  Similarity=0.275  Sum_probs=85.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.++.+.|.+++++.+||++ +|+++  ++.+++.+....   ........   ..     .......++.++|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~---~~~~~~~~---~~-----~~~~~~~~i~~~~~~   77 (124)
T cd04600           9 PDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARP---DGRRPLRG---RL-----RGRDKPETVGDIMSP   77 (124)
T ss_pred             CCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcc---cccchhhh---hh-----hcccccccHHHhccC
Confidence            346889999999999999999999 68888  999998742110   00000000   00     001234578899988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++++++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        78 --~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          78 --PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             --CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence              8999999999999999999999999999998899999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.47  E-value=7e-13  Score=89.64  Aligned_cols=102  Identities=20%  Similarity=0.164  Sum_probs=84.9

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcC-CCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccC--c-ccCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFG--F-NSGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~-~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~v  159 (188)
                      ++.++++++++.++++.|.+++ .+.+||+|++|+++|+++..|+++.....+...++.++|.+.  . .+.+++++.++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a   81 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEV   81 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHHH
Confidence            6788999999999999997665 889999998899999999999997664333334566777542  3 38889999999


Q ss_pred             HHHHhccCceEEEEEeC-CEeeceeec
Q 029781          160 LKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ++.|.+++...+||+++ +.+.|++|.
T Consensus        82 ~~~~~~~~~~~l~Vv~~~~~~~Gvl~~  108 (114)
T cd04801          82 LKLLEEQGLDELAVVEDSGQVIGLITE  108 (114)
T ss_pred             HHHHHHCCCCeeEEEcCCCcEEEEEec
Confidence            99999999999999986 899999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.47  E-value=4.5e-13  Score=111.36  Aligned_cols=137  Identities=19%  Similarity=0.102  Sum_probs=100.9

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|+++|.+++++++||+| +++++  +|.+|+..                           .....++.++|++ 
T Consensus       105 d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~---------------------------~~~~~~V~diMt~-  156 (479)
T PRK07807        105 DDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG---------------------------VDRFTQVRDVMST-  156 (479)
T ss_pred             CCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc---------------------------CccCCCHHHhccC-
Confidence            45899999999999999999999 78888  99999761                           0112468999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHH
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKF  162 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (188)
                       ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..........-+..+-... +.......+..+.
T Consensus       157 -~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aa-v~~~~~~~~~a~~  234 (479)
T PRK07807        157 -DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAA-VGINGDVAAKARA  234 (479)
T ss_pred             -CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhh-hccChhHHHHHHH
Confidence             99999999999999999999999999999988999999999999986653311100010110111 2222334455556


Q ss_pred             HhccCceEEE
Q 029781          163 VGGINCGFLL  172 (188)
Q Consensus       163 l~~~~~~~~~  172 (188)
                      |.+.+.+.+.
T Consensus       235 Lv~aGvd~i~  244 (479)
T PRK07807        235 LLEAGVDVLV  244 (479)
T ss_pred             HHHhCCCEEE
Confidence            6667777733

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.6e-13  Score=93.58  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=83.5

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|++.|.+++++.+||+| +++++  +|..|+.+...                     ........++.++|...
T Consensus         9 ~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~---------------------~~~~~~~~~~~~~~~~~   67 (118)
T cd04617           9 NTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI---------------------GGADLQKVPVGVIMTRM   67 (118)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH---------------------cCCCccCCCHHHHhCCC
Confidence            35889999999999999999999 78888  99999874210                     01122355678899731


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~---~~~~Giit~~dl~~  129 (188)
                      .++.++++++++.++++.|.+++.+.+||+|++   |+++|+||..|+++
T Consensus        68 ~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          68 PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            257899999999999999999999999999876   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.47  E-value=8.1e-14  Score=97.23  Aligned_cols=104  Identities=17%  Similarity=0.217  Sum_probs=86.6

Q ss_pred             cccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .+=+++.+++++|.++|++.+||+++++++  +|++++.+..            ..        ........+++++|..
T Consensus        79 ~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~------------le--------~~e~i~~~~vr~vM~e  138 (187)
T COG3620          79 SPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRAL------------LE--------GMESIRSLRVREVMGE  138 (187)
T ss_pred             CchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHH------------hc--------cccchhhhhHHHHhcC
Confidence            456899999999999999999999999999  9999988421            00        0134457899999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        .++++.++.++..+..++..++  .+.|+ ++|+++||||..|+++...
T Consensus       139 --~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         139 --PFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             --CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence              8999999999999998888765  46677 4799999999999998764

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.46  E-value=3.5e-13  Score=91.02  Aligned_cols=101  Identities=20%  Similarity=0.247  Sum_probs=84.3

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|++.|.+.+...+||+| +|+++  ++.+|+.+...                      .......++.++|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~----------------------~~~~~~~~v~~~~~~   66 (113)
T cd04607           9 PDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL----------------------KGLSLDDPVSEVMNR   66 (113)
T ss_pred             CCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh----------------------cCCCcCCCHHHhhcC
Confidence            345889999999999999999998 78888  99999763110                      011223568899988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        .+.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus        67 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          67 --NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             --CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence              8889999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=3.1e-13  Score=90.85  Aligned_cols=100  Identities=20%  Similarity=0.204  Sum_probs=84.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-.++.++++.|.+.+...+||++ +|+++  ++..++.+...                       ......++.++|..
T Consensus         8 ~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~-----------------------~~~~~~~v~~~~~~   64 (111)
T cd04639           8 PADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA-----------------------EGGPDAPVRGVMRR   64 (111)
T ss_pred             CCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH-----------------------hcCCCCcHHHHhcC
Confidence            457889999999989999999999 68888  99999873210                       11123468899987


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++.++.++.++++.|.+++...+||++++|+++|++|.+|+.+
T Consensus        65 --~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          65 --DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             --CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence              8999999999999999999999999999997799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=9.6e-13  Score=88.43  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=86.7

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..++.+.........++.++|..... +.++.++.++++.
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~   81 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLRL   81 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHHHH
Confidence            577899999999999999988899999999889999999999998765443333456777755555 8999999999999


Q ss_pred             HhccCceEEEEEeC-CEeeceeec
Q 029781          163 VGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      |.+++...+||+++ +.+.|++|.
T Consensus        82 ~~~~~~~~~~Vv~~~~~~~G~it~  105 (111)
T cd04639          82 MQQGGAPAVPVVDGSGRLVGLVTL  105 (111)
T ss_pred             HHhcCCceeeEEcCCCCEEEEEEH
Confidence            99999999999986 899999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=3.1e-13  Score=89.46  Aligned_cols=85  Identities=16%  Similarity=0.136  Sum_probs=74.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||+| + |+++  +|..|+.+.                                    + 
T Consensus         8 ~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~------------------------------------~-   50 (98)
T cd04618           8 TKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI------------------------------------L-   50 (98)
T ss_pred             CCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh------------------------------------e-
Confidence            346889999999999999999999 4 6888  999998721                                    0 


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLA  129 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~  129 (188)
                         .+.++.+++++.+|++.|.+++.+++||+|++ |+++|++|.+|++.
T Consensus        51 ---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          51 ---RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             ---eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence               06789999999999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.5e-12  Score=88.06  Aligned_cols=102  Identities=18%  Similarity=0.121  Sum_probs=86.0

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccC---cccccccccccCcc-cCCcchHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISG---SMRKLGFNLYFGFN-SGNAYFARW  158 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~  158 (188)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+++.+....   ...++.++|...+. +.+++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            67899999999999999999999999999987 89999999999987543221   12346677765555 999999999


Q ss_pred             HHHHHhccCceEEEEEeCCEeeceeec
Q 029781          159 LLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       159 v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +++.|.+++...+||++++.+.|+++.
T Consensus        82 ~~~~~~~~~~~~~~Vvd~~~~~Gvi~~  108 (114)
T cd04630          82 CARLMERTNIRRAPVVENNELIGIISL  108 (114)
T ss_pred             HHHHHHHcCCCEeeEeeCCEEEEEEEH
Confidence            999999999999999988999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.46  E-value=1.6e-12  Score=87.33  Aligned_cols=102  Identities=25%  Similarity=0.205  Sum_probs=86.4

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (188)
                      ++.+++++.++.++.+.|.+.+.+.+||++++ |+++|+++..++++..........+.+++.+...+.+++.+.++++.
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   81 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDLLRPPLFVPESTPLDDLLEE   81 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHHhcCCeecCCCCcHHHHHHH
Confidence            57889999999999999999999999999987 89999999999998765433223345566665558999999999999


Q ss_pred             HhccCceEEEEEeC-CEeeceeec
Q 029781          163 VGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      |.+++...+||+++ +.+.|++|.
T Consensus        82 ~~~~~~~~~~Vv~~~~~~~Gvit~  105 (111)
T cd04590          82 MRKERSHMAIVVDEYGGTAGLVTL  105 (111)
T ss_pred             HHhcCCcEEEEEECCCCEEEEeEH
Confidence            99999999999976 889999985

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.9e-12  Score=86.97  Aligned_cols=102  Identities=23%  Similarity=0.251  Sum_probs=86.4

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc---ccccccccccCcc-cCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS---MRKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      ++.++.++.++.++++.|.+++.+.+||+|++++++|+++..|+++.+.....   ..++.++|.+... +.++.+..++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence            57789999999999999999999999999988999999999999976543322   2346677755555 8899999999


Q ss_pred             HHHHhccCceEEEEEeCCEeeceeec
Q 029781          160 LKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      ++.|.+.+...+||++++.+.|++|.
T Consensus        82 l~~~~~~~~~~~~Vv~~~~~~Gvit~  107 (113)
T cd04623          82 MALMTERRFRHLPVVDGGKLVGIVSI  107 (113)
T ss_pred             HHHHHHcCCCEeEEEeCCEEEEEEEH
Confidence            99999999988899988999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=3.7e-13  Score=91.10  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=84.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|++.|.+++++.+||+| + ++++  ++.+|+++....                    ........++.++|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~--------------------~~~~~~~~~v~~~~~   67 (114)
T cd04630           8 GLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA--------------------EGRDPDRVNVYEIMT   67 (114)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh--------------------CCCCCCccCHHHHhc
Confidence            345889999999999999999999 6 7988  999998732100                    001223457889998


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      .  ++.++++++++.++++.|.+++...+||+|+ |+++|+|+..|+++
T Consensus        68 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          68 K--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             C--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            7  8999999999999999999999999999986 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.45  E-value=4.6e-13  Score=89.88  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             cccHHHHHHHHhcCc-----ccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781            6 IPSCLTLARLNANGV-----INSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD   77 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~-----~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   77 (188)
                      -.++.++++.|.+++     +..+||+| +|+++  ++.+++.+.                           ....++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---------------------------~~~~~v~~   57 (109)
T cd04606           5 DWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---------------------------DPDTPVSD   57 (109)
T ss_pred             cCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---------------------------CCcchHHH
Confidence            357899999998877     46799998 78888  998887620                           12356889


Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                      +|.+  ++..+.+++++.++++.|.+++...+||+|++|+++|++|..|++++
T Consensus        58 ~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          58 IMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9988  88999999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=4e-13  Score=91.82  Aligned_cols=108  Identities=10%  Similarity=0.141  Sum_probs=81.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCC-CCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPP-RNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++.+||+| +|+++  ++.+|+......            .. .  ..... ........+.|.
T Consensus         8 ~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~------------~~-~--~~~~~~~~~~~~~~~~~~   72 (120)
T cd04641           8 PDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKE------------GA-Y--NNLDLTVGEALERRSQDF   72 (120)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhc------------Cc-c--ccccCCHHHHHhhcccCC
Confidence            456889999999999999999999 88999  999998832100            00 0  00000 000012234455


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      .  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        73 ~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          73 E--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             C--CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            5  6789999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.45  E-value=2.4e-13  Score=91.94  Aligned_cols=102  Identities=20%  Similarity=0.210  Sum_probs=82.4

Q ss_pred             ccccHHHHHHHHhcCc-ccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGV-INSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~-~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      +-.++.+|.+.|.+++ .+.+||+| +|+++  ++.+|+++..                       .......++.++|.
T Consensus         8 ~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~-----------------------~~~~~~~~v~~~~~   64 (114)
T cd04801           8 AHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP-----------------------TSQWAQTTVIQVMT   64 (114)
T ss_pred             CCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH-----------------------Hhhccccchhhhhc
Confidence            4568899999997775 88999999 78898  9999987321                       01112456888997


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      +...+.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        65 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          65 PAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            5223678999999999999999999999999997789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=99.44  E-value=1.1e-12  Score=107.67  Aligned_cols=116  Identities=9%  Similarity=-0.007  Sum_probs=99.4

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCc--ccccccccc
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGS--MRKLGFNLY  145 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~  145 (188)
                      ...+.+++++|+|+.++.+++.+.++.++++.+.+++++++||++++ ++++|+++.+|++........  ...+.+++.
T Consensus       183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r  262 (413)
T PRK11573        183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAAD  262 (413)
T ss_pred             ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhcc
Confidence            45678999999999999999999999999999999999999999754 689999999999975432211  112345677


Q ss_pred             cCcccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781          146 FGFNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS  184 (188)
Q Consensus       146 ~~~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit  184 (188)
                      ++..++++.++.++++.|.+++.+++.|+|+ |.+.|+||
T Consensus       263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVT  302 (413)
T PRK11573        263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVT  302 (413)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEee
Confidence            8778999999999999999999999999997 89999998

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.44  E-value=4.7e-13  Score=90.66  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.++++.|.+.+++.+||+| +|+++  ++.+|+.+...                     ........++.++|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~---------------------~~~~~~~~~~~~~~~~   66 (115)
T cd04593           8 ATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE---------------------ADEAGEPSAVDEVATP   66 (115)
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh---------------------cccccccccHHHhccC
Confidence            346889999999999999999999 78988  99999873210                     0011223458889988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC--CcEEEEEehHHHhhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLAL  130 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~--~~~~Giit~~dl~~~  130 (188)
                        ++.++.+++++.++++.|.+++...+||+|++  |+++|+||.+|++++
T Consensus        67 --~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          67 --PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             --CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence              89999999999999999999999999999876  799999999999753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.44  E-value=8.6e-13  Score=88.00  Aligned_cols=96  Identities=20%  Similarity=0.315  Sum_probs=82.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.++++.|.+.+...+||+|+++++  ++..+++..                           ....++.++|.+ 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~---------------------------~~~~~~~~~~~~-   60 (107)
T cd04610           9 PDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK---------------------------DPDETVEEIMSK-   60 (107)
T ss_pred             CCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------CccccHHHhCCC-
Confidence            34588999999998888899999888888  999998721                           113468899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          61 -DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             -CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence             7899999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.44  E-value=4.5e-13  Score=89.62  Aligned_cols=97  Identities=18%  Similarity=0.281  Sum_probs=83.1

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-+++.++.+.|.++++..+||+| +|+++  ++..|+....                          ....++.++|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~--------------------------~~~~~v~~~~~~   62 (109)
T cd04583           9 PDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY--------------------------KEAKSLEDIMLE   62 (109)
T ss_pred             CCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------hcCCcHhHhhcC
Confidence            345789999999999999999999 68888  9999987311                          112467888988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        .+.++++++++.++++.|.+++.+.+||++++|+++|++|.+|+++
T Consensus        63 --~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          63 --DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             --CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence              8899999999999999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2e-12  Score=90.45  Aligned_cols=102  Identities=16%  Similarity=0.068  Sum_probs=87.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc-------------------------cc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS-------------------------MR  138 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-------------------------~~  138 (188)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.......                         ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            56789999999999999999999999999988999999999999976643211                         23


Q ss_pred             ccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          139 KLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       139 ~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      ++.++|.+.+. +.+++.+.++++.|.+++.+.+||++++.+.|++|.
T Consensus        82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~  129 (135)
T cd04621          82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITK  129 (135)
T ss_pred             cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEH
Confidence            46777876655 899999999999999999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.44  E-value=1.4e-12  Score=108.42  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=86.8

Q ss_pred             cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      -.++.+++++|.+++++.+||+|+++++  +|.+|+..                           .....++.++|++  
T Consensus       104 ~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~---------------------------~~~~~~V~dIMt~--  154 (475)
T TIGR01303       104 HDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLG---------------------------VDRFTQVRDIMST--  154 (475)
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhc---------------------------CCCCCCHHHHccC--
Confidence            4589999999999999999999977888  99999761                           1123479999998  


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      +++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|+++....
T Consensus       155 ~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       155 DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence            89999999999999999999999999999988999999999999986543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.43  E-value=7.7e-13  Score=88.17  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=81.3

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|++.|.+++.+.+||+| +|+++  ++..|+.+..                            ..++.++|.+ 
T Consensus         9 ~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~----------------------------~~~~~~~~~~-   59 (106)
T cd04582           9 DDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS----------------------------GGCCGDHAEP-   59 (106)
T ss_pred             CCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc----------------------------ccchhhhccc-
Confidence            35788999999999999999999 78998  9999987210                            1246788887 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       .+..+.+++++.++++.|.+++.+.+||+|++|+++|+++.+++++
T Consensus        60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          60 -FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             -CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence             7788999999999999999999999999998889999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.7e-12  Score=86.31  Aligned_cols=102  Identities=20%  Similarity=0.182  Sum_probs=86.3

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-CcccccccccccCcc-cCCcchHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGFN-SGNAYFARWLLK  161 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~v~~  161 (188)
                      ++..++++.++.++++.|.+.+.+.+||+|++|+++|+++..|++.+.... .....+.++|..... +.+++.+.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~   81 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALD   81 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHHHH
Confidence            577899999999999999999999999999889999999999998754322 122345666765555 899999999999


Q ss_pred             HHhccCceEEEEEeCCEeeceeec
Q 029781          162 FVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       162 ~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      .|.+++...+||++++.+.|++|.
T Consensus        82 ~~~~~~~~~~~Vv~~~~~~G~it~  105 (111)
T cd04626          82 IMREKQIGRLPVVDDNKLIGVVRT  105 (111)
T ss_pred             HHHHcCCCeeeEeECCEEEEEEEh
Confidence            999999999999988999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.4e-12  Score=86.95  Aligned_cols=102  Identities=23%  Similarity=0.116  Sum_probs=84.7

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--ccccccccccc---CcccCCcchHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYF---GFNSGNAYFARW  158 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~  158 (188)
                      ++.++.+++++.++++.|..++.+.+||+|++|+++|+++..|+.+.....+  ....+.++|..   ...+.+++.+.+
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   81 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLE   81 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence            5789999999999999999999999999998899999999999987654222  12335566753   334999999999


Q ss_pred             HHHHHhccCceEEEEEeC----CEeeceeec
Q 029781          159 LLKFVGGINCGFLLTVEG----AMTANIISS  185 (188)
Q Consensus       159 v~~~l~~~~~~~~~vv~~----~~~~giit~  185 (188)
                      ++++|.+++...+||+++    +.+.|++|.
T Consensus        82 ~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~  112 (118)
T cd04617          82 AAKKLIEHQVDSLPVVEKVDEGLEVIGRITK  112 (118)
T ss_pred             HHHHHHHcCCCEeeEEeCCCccceEEEEEEh
Confidence            999999999999999975    489999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=5.8e-13  Score=90.13  Aligned_cols=101  Identities=16%  Similarity=0.203  Sum_probs=81.2

Q ss_pred             cccHHHHHHHHhcCc-ccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGV-INSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~-~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.++++.|.+++ ...+||+++|+++  ++.+|+++....                     .......++.++|.+ 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~---------------------~~~~~~~~i~~~~~~-   66 (115)
T cd04620           9 DTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAI---------------------GKDLSDLPIGEVMTQ-   66 (115)
T ss_pred             CCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhc---------------------CCCccccCHHHhcCC-
Confidence            457899999998888 6677777788888  999998732100                     011123578899987 


Q ss_pred             CCeeEEcCC--CCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTT--TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~--~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.++  +++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus        67 -~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          67 -PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             -CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence             78888887  78999999999999999999998899999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=5.9e-13  Score=89.76  Aligned_cols=103  Identities=16%  Similarity=0.159  Sum_probs=85.5

Q ss_pred             cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .+-.++.+|++.|.+.+.+.+||+| +++++  ++..|+.+...                     ........++.++|.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~---------------------~~~~~~~~~i~~~~~   65 (113)
T cd04615           7 VLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYAL---------------------ESEELKDAKVREVMN   65 (113)
T ss_pred             eCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhh---------------------hhhhhcCCcHHHhcc
Confidence            3456889999999999999999999 78888  99999873110                     011223457889998


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      +  ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        66 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          66 S--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             C--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            8  8999999999999999999999999999998889999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.43  E-value=3.5e-12  Score=86.35  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=85.5

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc--ccccccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS--MRKLGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+.......  ...+.++|..... +.+++.+.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l   81 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL   81 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence            56788999999999999999999999999988999999999999976543322  2225666665555 88999999999


Q ss_pred             HHHhccCceEEEEEeC---CEeeceeec
Q 029781          161 KFVGGINCGFLLTVEG---AMTANIISS  185 (188)
Q Consensus       161 ~~l~~~~~~~~~vv~~---~~~~giit~  185 (188)
                      ++|.+++...+||+++   +.+.|++|.
T Consensus        82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~  109 (115)
T cd04593          82 DRMASRGLRQLPVVDRGNPGQVLGLLTR  109 (115)
T ss_pred             HHHHHcCCceeeEEeCCCCCeEEEEEEh
Confidence            9999999999999975   589999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.43  E-value=3.3e-12  Score=85.72  Aligned_cols=101  Identities=17%  Similarity=0.148  Sum_probs=86.7

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.+++.+.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+.........++.++|.+... +.+++.+.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   81 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL   81 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence            6788999999999999999889999999997 9999999999998766443333456677766555 9999999999999


Q ss_pred             HhccCceEEEEEeCCEeeceeec
Q 029781          163 VGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      |.+++...+||++++...|++|.
T Consensus        82 ~~~~~~~~~~V~~~~~~~Gvvt~  104 (110)
T cd04595          82 MVEHDIGRVPVVEDGRLVGIVTR  104 (110)
T ss_pred             HHHcCCCeeEEEeCCEEEEEEEh
Confidence            99999999999999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1e-12  Score=89.77  Aligned_cols=111  Identities=18%  Similarity=0.240  Sum_probs=85.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.++++.|.+++++.+||+| +|+++  ++..++++...  .....    . ..     .........++.++|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~--~~~~~----~-~~-----~~~~~~~~~~~~~~~~~   75 (122)
T cd04635           8 PDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGS--VRTSV----E-DQ-----QRTQTKASPTVEKIMST   75 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcc--ccccc----c-ch-----hhhhhhccCcHHHHhcC
Confidence            446889999999999999999999 78988  99999874210  00000    0 00     00001234568889987


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++..+.+++++.++++.|.+++.+.+||++++|+++|++|..|+++
T Consensus        76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          76 --PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             --CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence              8899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.42  E-value=1.4e-12  Score=87.41  Aligned_cols=96  Identities=27%  Similarity=0.289  Sum_probs=80.9

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.++++.|.++++..+||+| +|+++  ++.+++...                          .....++.++|.. 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~--------------------------~~~~~~v~~~~~~-   62 (110)
T cd04601          10 DATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE--------------------------TDLDKPVSEVMTP-   62 (110)
T ss_pred             CCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec--------------------------ccCCCCHHHhccc-
Confidence            45789999999999999999999 68888  999887621                          1123578899977 


Q ss_pred             CCeeEEcC-CCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKT-TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~-~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       .+..+.. ++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus        63 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          63 -ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             -CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence             6666666 999999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=8.1e-13  Score=88.93  Aligned_cols=100  Identities=26%  Similarity=0.266  Sum_probs=83.8

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|.+.|.+.++..+||+| +|+++  ++..++++...                      .......++.++|.+ 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~----------------------~~~~~~~~v~~~~~~-   65 (112)
T cd04624           9 DTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA----------------------AGIDLDTPVSEIMTR-   65 (112)
T ss_pred             CCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh----------------------ccCCCccCHHHhccC-
Confidence            45789999999999999999999 78988  99999873210                      011223468899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus        66 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          66 -DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             -CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence             8899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=3.3e-12  Score=84.13  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=78.1

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFV  163 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l  163 (188)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++....              ...+.+++.+.++.++|
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~--------------~~~v~~~~~l~~a~~~m   67 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSE--------------VVTATKRTTVSECAQKM   67 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCC--------------cEEecCCCCHHHHHHHH
Confidence            6788999999999999999999999999998899999999999987431              33378889999999999


Q ss_pred             hccCceEEEEEeC-CEeeceeec
Q 029781          164 GGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       164 ~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .+++...+||+++ +.+.|++|.
T Consensus        68 ~~~~~~~lpVv~~~~~~~Giit~   90 (96)
T cd04614          68 KRNRIEQIPIINGNDKLIGLLRD   90 (96)
T ss_pred             HHhCCCeeeEECCCCcEEEEEEH
Confidence            9999999999986 799999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.42  E-value=1.1e-12  Score=87.10  Aligned_cols=94  Identities=24%  Similarity=0.339  Sum_probs=81.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.++++.|.++++..+||+|+++++  ++.+++.+.                           ....++.++|.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~---------------------------~~~~~~~~~~~~-   59 (105)
T cd04599           8 PLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRA---------------------------HPNRLVADAMTR-   59 (105)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhcc---------------------------cccCCHHHHccC-
Confidence            34578999999999999999999988888  999998721                           012357889988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL  128 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~  128 (188)
                       ++.++++++++.++++.|.+++.+.+||+|+ |+++|++|.+|++
T Consensus        60 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          60 -EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             -CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence             8999999999999999999999999999996 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=7.8e-13  Score=88.94  Aligned_cols=102  Identities=26%  Similarity=0.328  Sum_probs=84.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.++.+.|.++++..+||+| +++++  ++.+|+.+....                    ........++.++|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~~   67 (113)
T cd04623           8 PDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL--------------------RGASALDTPVSEIMTR   67 (113)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh--------------------cCCCccccCHHHhcCC
Confidence            346899999999999999999999 68888  999998742100                    0011224578999988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++.++.++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus        68 --~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          68 --NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             --CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence              8899999999999999999999999999986 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.42  E-value=2.2e-12  Score=107.82  Aligned_cols=102  Identities=20%  Similarity=0.165  Sum_probs=87.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      .-.++.+|+++|.+++++.+||+|+    ++++  +|.+|+...                         ....+.++.++
T Consensus       112 pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~-------------------------~~~~~~~V~dI  166 (502)
T PRK07107        112 PDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS-------------------------RMSLDTKVKDF  166 (502)
T ss_pred             CCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------------ccCCCCCHHHH
Confidence            3468999999999999999999994    6888  999998621                         11335679999


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      |++..+++++++++++.+|++.|.+++++.+||+|++++++|+||.+|+++..
T Consensus       167 Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        167 MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            98533678999999999999999999999999999889999999999999864

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.42  E-value=8.2e-13  Score=88.96  Aligned_cols=102  Identities=25%  Similarity=0.294  Sum_probs=85.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.++.+.|.+++++.+||+| +|+++  ++.+|+.+...                     ........++.++|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~---------------------~~~~~~~~~v~~~~~~   66 (114)
T cd04613           8 EDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF---------------------DPSLYDLVVASDIMTK   66 (114)
T ss_pred             CCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh---------------------cccccccEEHHHhccC
Confidence            456889999999999999999999 78888  99999873210                     0011123678999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~  129 (188)
                        ++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+++.+|++.
T Consensus        67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          67 --PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             --CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence              8999999999999999999999999999987 789999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.42  E-value=3.8e-12  Score=87.15  Aligned_cols=102  Identities=24%  Similarity=0.285  Sum_probs=86.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC------------cccccccccccCcc-c
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG------------SMRKLGFNLYFGFN-S  150 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~------------~~~~~~~~~~~~~~-~  150 (188)
                      ++.++.++.++.++.+.|.+.+.+.+||++++|+++|+++..+++++.....            ....+.++|...+. +
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   82 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTV   82 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeee
Confidence            6789999999999999999999999999998899999999999987654322            12245667765555 8


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+++++.++++.|.+++...+||++ ++.+.|++|.
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~  118 (124)
T cd04600          83 RPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQ  118 (124)
T ss_pred             CCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEh
Confidence            9999999999999999999999998 7889999985

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=2e-12  Score=88.31  Aligned_cols=112  Identities=25%  Similarity=0.284  Sum_probs=86.3

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.++.+.|.+.+++.+||++ +|+++  ++.+++++..........            ..........++.++|..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~v~~~~~~   75 (122)
T cd04803           8 EDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNG------------EESLTKERDVPVAEVMKT   75 (122)
T ss_pred             CCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccc------------ccccccccCcCHHHhhCC
Confidence            446889999999999999999999 68888  999998742110000000            000001235678899988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                        ++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|++++
T Consensus        76 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~  122 (122)
T cd04803          76 --DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL  122 (122)
T ss_pred             --CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence              89999999999999999999999999999987899999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=1.7e-12  Score=89.52  Aligned_cols=114  Identities=16%  Similarity=0.152  Sum_probs=81.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|++.|.+++++.+||+| +|+++  ++.+|+++........     ..... ..  ............+.|.. 
T Consensus         9 ~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~-----~~~~~-~~--~~~~~~~~~~~~~~~~~-   79 (126)
T cd04642           9 DERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDL-----LLYRT-IT--FKELSEKFTDSDGVKSR-   79 (126)
T ss_pred             CccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchh-----hcccc-hh--hhhhhhhcccccccccC-
Confidence            45789999999999999999999 78888  9999987422110000     00000 00  00000000122345666 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        80 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          80 -PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             -CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence             7889999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=1.4e-12  Score=91.29  Aligned_cols=120  Identities=18%  Similarity=0.168  Sum_probs=85.9

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccc---hhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVS---REVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      -.++.+|++.|.+++.+.+||+| +|+++  ++..|+++........   .....|...... ...........++.++|
T Consensus         9 ~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~   87 (135)
T cd04621           9 EHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQ-KRYRYVKEVPLVAEDIM   87 (135)
T ss_pred             CCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccc-ccccccccccccHHHhc
Confidence            45799999999999999999999 78999  9999987522110000   000000000000 00000112345789999


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      .+  ++..+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus        88 ~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          88 TE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             CC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            88  8899999999999999999999999999986 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.41  E-value=4.7e-12  Score=84.89  Aligned_cols=101  Identities=22%  Similarity=0.219  Sum_probs=85.6

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.++.+++++.++.+.|.+.+++.+||+++ |+++|+++..|+++.........++.+++.+... +.++..+.++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~   80 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL   80 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHHHH
Confidence            5778999999999999999999999999997 9999999999999876544333456667765555 9999999999999


Q ss_pred             HhccCceEEEEEeC-CEeeceeec
Q 029781          163 VGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      |.+.+...+||+++ +.+.|++|.
T Consensus        81 ~~~~~~~~~~V~~~~~~~~G~i~~  104 (110)
T cd04588          81 MNKHNVGRLIVTDDEGRPVGIITR  104 (110)
T ss_pred             HHhcCCCEEEEECCCCCEEEEEEh
Confidence            99999988899976 899999984

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=2.6e-12  Score=86.65  Aligned_cols=102  Identities=22%  Similarity=0.167  Sum_probs=86.0

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC----cccccccccccCcc-cCCcchHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG----SMRKLGFNLYFGFN-SGNAYFARW  158 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~  158 (188)
                      ++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++++.+....    ...++.++|.+... +.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD   81 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence            5778999999999999999888899999998899999999999987543221    23346667765555 899999999


Q ss_pred             HHHHHhccCceEEEEEeCCEeeceeec
Q 029781          159 LLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       159 v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +.+.|.+++.+.+||++++.+.|++|.
T Consensus        82 ~~~~~~~~~~~~~~Vv~~~~~~Gvit~  108 (114)
T cd04629          82 LAQLMLKAKPKRYPVVDDGKLVGQISR  108 (114)
T ss_pred             HHHHHHHhCCCccCEEECCEEEEEEEH
Confidence            999999999998999988999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.40  E-value=1.7e-12  Score=101.00  Aligned_cols=111  Identities=23%  Similarity=0.200  Sum_probs=95.9

Q ss_pred             CcccccccccCCC-eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-CcccccccccccCcc
Q 029781           72 TYTVGDFMTKKED-LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGFN  149 (188)
Q Consensus        72 ~~~v~~im~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~~  149 (188)
                      ..+++++|.+  + +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+..... ....++.++|.+...
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            4789999988  7 88999999999999999999999999999889999999999998765432 233457788877666


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS  184 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit  184 (188)
                       +.+++++.++++.|.+++...+||+++ +.+.|+|+
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence             999999999999999999999999975 79999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.40  E-value=1.2e-12  Score=87.92  Aligned_cols=99  Identities=28%  Similarity=0.349  Sum_probs=83.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.+|.+.|.+++++.+||+|+|+++  ++..|+.+...                       ......++.++|.+ 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~-----------------------~~~~~~~~~~~~~~-   64 (110)
T cd04595           9 PEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALR-----------------------HGLGHAPVKDYMST-   64 (110)
T ss_pred             CCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHh-----------------------cccccCcHHHHhcC-
Confidence            34578999999999999999999988888  99999773110                       11134678899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.+++++.++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus        65 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          65 -DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             -CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence             899999999999999999999999999999 789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.40  E-value=1.3e-12  Score=87.97  Aligned_cols=102  Identities=26%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-.++.++++.|.+.+++.+||+| +|+++  ++..++.+....                     .......++.++|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~---------------------~~~~~~~~v~~~~~~   67 (114)
T cd04604           9 PDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK---------------------GLDILTLPVADVMTR   67 (114)
T ss_pred             CCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc---------------------cCccccCCHHHhhcc
Confidence            456789999999888899999999 78988  998887732100                     011123468999988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        68 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          68 --NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             --CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence              8889999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=1.2e-12  Score=89.72  Aligned_cols=114  Identities=25%  Similarity=0.357  Sum_probs=85.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.++++..+||+| + |+++  ++.+|+.+....   .   ..+.... .   .........++.++|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~---~---~~~~~~~-~---~~~~~~~~~~~~~~~~   77 (125)
T cd04631           8 PTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG---G---EKFNKIK-T---GNGLEAINEPVRSIMT   77 (125)
T ss_pred             CCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc---c---chhcccc-c---cccchhhhcCHHHHhc
Confidence            446889999999999999999999 5 8988  999998742110   0   0000000 0   0001112457889998


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                      +  ++.++++++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus        78 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          78 R--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             C--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence            8  89999999999999999999999999999977899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=9.2e-13  Score=89.13  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCC---CCcccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRN---GTYTVGDF   78 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i   78 (188)
                      +-+++.++++.|.+++++.+||+| +|+++  ++.+|+.+....                   ......   ...++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~-------------------~~~~~~~~~~~~~v~~~   68 (116)
T cd04643           8 DTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG-------------------LENLDLERLVDLKVIDV   68 (116)
T ss_pred             CCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc-------------------cCchhHHHHhCCcHHHH
Confidence            346899999999999999999999 78888  999998742210                   000000   14578899


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                      |.+  ++.++.+++++.++++.|.+++  .+||+|++|+++|++|.+|++++
T Consensus        69 ~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~  116 (116)
T cd04643          69 MNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             hcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence            998  8999999999999999998765  59999988999999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.40  E-value=9.1e-13  Score=105.09  Aligned_cols=102  Identities=21%  Similarity=0.182  Sum_probs=86.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|++.|.+++...+||+| +|+++  ++.+|+.+...                      .......++.++|.+
T Consensus       214 ~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~----------------------~~~~~~~~v~~im~~  271 (321)
T PRK11543        214 LTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV----------------------GGGALTTPVNEAMTR  271 (321)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh----------------------CCCCcCCcHHHhcCC
Confidence            356889999999999999999999 88999  99999763110                      011224568999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                        ++.++.+++++.++++.|.+++...+||+|++|+++|+||.+|++++
T Consensus       272 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        272 --GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             --CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence              89999999999999999999999999999988899999999999864

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.40  E-value=6.9e-12  Score=84.27  Aligned_cols=101  Identities=18%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc--CcccccccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS--GSMRKLGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++.+++++.++.++.+.|.+.+...+||+|+ |+++|+++..++++.....  ....++.++|.+... +.+++.+.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            5678899999999999999999999999997 8999999999998765332  123446677766555 89999999999


Q ss_pred             HHHhccCceEEEEEeCCEeeceeec
Q 029781          161 KFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       161 ~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +.|.+++...+||++++.+.|++|.
T Consensus        81 ~~~~~~~~~~~~Vv~~~~~~G~it~  105 (111)
T cd04589          81 LLMTRHRIHRVVVREGGEVVGVLEQ  105 (111)
T ss_pred             HHHHHhCccEEEEeeCCEEEEEEEh
Confidence            9999999999999999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=1.8e-12  Score=85.38  Aligned_cols=84  Identities=24%  Similarity=0.343  Sum_probs=74.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|++.|.+++++.+||+| +|+++  ++.+|+.+.                                      . 
T Consensus         9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------------~-   49 (96)
T cd04614           9 ETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------------S-   49 (96)
T ss_pred             CCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC--------------------------------------C-
Confidence            45788999999999999999999 78988  899998710                                      0 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       .+.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        50 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 -EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             -CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence             1678899999999999999999999999998789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.40  E-value=1.6e-12  Score=88.55  Aligned_cols=112  Identities=26%  Similarity=0.331  Sum_probs=85.8

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.++.+.|.+.++..+||+|+|+++  ++..++..........    ...       ..........++.++|.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~-   75 (122)
T cd04585           8 PDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATT----LDI-------WELYYLLSKIKVSDIMTR-   75 (122)
T ss_pred             CCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhccccc----ccc-------hhhhhhhcccCHHHhccC-
Confidence            34678999999999999999999988888  9999987422100000    000       000001124578899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++++++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus        76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          76 -DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             -CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence             8999999999999999999999999999998799999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=6.9e-12  Score=84.35  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=85.3

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-CcccccccccccCcc-cCCcchHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGFN-SGNAYFARWLLK  161 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~v~~  161 (188)
                      ++.++.++.++.++.+.|.+.+.+.+||+|++|+++|+++..++++.+... +....+.++|.+.+. +.+++...++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~   81 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAK   81 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHH
Confidence            577899999999999999999999999999889999999999998765432 223346677765555 888999999999


Q ss_pred             HHhccCceEEEEEeC-CEeeceeec
Q 029781          162 FVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       162 ~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .|.+++...+||+++ +.+.|++|.
T Consensus        82 ~~~~~~~~~~~Vv~~~g~~~Gilt~  106 (112)
T cd04624          82 LMRKNNIRHHLVVDKGGELVGVISI  106 (112)
T ss_pred             HHHHcCccEEEEEcCCCcEEEEEEH
Confidence            999888888899875 888999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=1.3e-12  Score=88.20  Aligned_cols=103  Identities=24%  Similarity=0.251  Sum_probs=84.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-.++.+|.+.|.+++++.+||++ +++++  ++..++.+....                   .........++.++|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-------------------~~~~~~~~~~v~~~~~~   68 (114)
T cd04629           8 PDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE-------------------SSYHCDGVATVRDIMTT   68 (114)
T ss_pred             CCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhh-------------------hhhccCCCccHHHHhcc
Confidence            446889999999999999999999 78888  999998732100                   00011224578899988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus        69 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          69 --EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             --CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence              8899999999999999999999999999996 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=1.3e-12  Score=87.86  Aligned_cols=100  Identities=25%  Similarity=0.182  Sum_probs=83.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-.++.++++.|.+++++.+||+| +|+++  ++.+|+.....                      .......++.++|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~----------------------~~~~~~~~v~~~~~~   65 (111)
T cd04626           8 EDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL----------------------FESFLEKKVFNIVSQ   65 (111)
T ss_pred             CCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh----------------------hcccccCcHHHHhcC
Confidence            345788999999999999999999 78888  99999873110                      001123468889988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++.+++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus        66 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          66 --DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             --CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence              8899999999999999999999999999997 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.40  E-value=3.3e-12  Score=89.10  Aligned_cols=102  Identities=27%  Similarity=0.344  Sum_probs=86.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc------------------------Ccccc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS------------------------GSMRK  139 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~------------------------~~~~~  139 (188)
                      ++.++.++.++.++++.|.+++...+||+|++|+++|+++..|+++.....                        .....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK   82 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence            678899999999999999999999999999889999999999998654321                        11234


Q ss_pred             cccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          140 LGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       140 ~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +.++|.+... +.++.+..++++.|.+.+.+.+||++++.+.|++|.
T Consensus        83 v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~  129 (135)
T cd04586          83 VADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSR  129 (135)
T ss_pred             HHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEh
Confidence            5666766555 899999999999999999999999999999999985

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.8e-12  Score=86.40  Aligned_cols=102  Identities=22%  Similarity=0.200  Sum_probs=85.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-----------cccccccccccCcc-cC
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-----------SMRKLGFNLYFGFN-SG  151 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-----------~~~~~~~~~~~~~~-~~  151 (188)
                      ++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..++++......           ....+.+++...+. +.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~   81 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence            5788999999999999999999999999998899999999999987654321           12345666755555 89


Q ss_pred             CcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          152 NAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       152 ~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +++...++++.|.+++...+||+++ +...|++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~  116 (122)
T cd04803          82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITR  116 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEH
Confidence            9999999999999999999999986 789999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.40  E-value=1.3e-12  Score=87.58  Aligned_cols=100  Identities=22%  Similarity=0.264  Sum_probs=83.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.++.+.|.+++++.+||+++++++  ++..|+++...                       ......++.++|.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~-----------------------~~~~~~~v~~~~~~-   63 (110)
T cd04588           8 PNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIA-----------------------RGLELAKVKDVMTK-   63 (110)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHh-----------------------ccccccCHHHHhcC-
Confidence            34689999999999999999999988877  99999873210                       11122568889987 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.++.++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus        64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          64 -DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             -CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence             8899999999999999999999999999998799999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.39  E-value=1.1e-12  Score=91.53  Aligned_cols=122  Identities=27%  Similarity=0.272  Sum_probs=85.3

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCC-CCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITN-SVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~im~   80 (188)
                      .-.++.++.+.|.++++.++||+| +++++  ++.+|+.+....-......+........... .........++.++|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   88 (135)
T cd04586           9 PETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRKVADVMT   88 (135)
T ss_pred             CCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCCHHHHhC
Confidence            345789999999999999999999 78888  9999987422110000000000000000000 0000113457889998


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      +  ++..+++++++.++++.|.+++.+.+||+| +|+++|+||.+|+++
T Consensus        89 ~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          89 R--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             C--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            8  899999999999999999999999999999 799999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.39  E-value=1.5e-12  Score=87.39  Aligned_cols=98  Identities=22%  Similarity=0.349  Sum_probs=83.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-.++.++++.|.++++..+||+| +|+++  ++.+++++...                         ....++.++|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-------------------------~~~~~~~~~~~~   63 (110)
T cd04605           9 EDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-------------------------RDKKSVEDIMTR   63 (110)
T ss_pred             CCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------hCccCHHHhcCC
Confidence            446889999999999999999999 78988  99999863110                         011248888987


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++.+++++.++++.|.+++...+||++++|+++|++|..|+++
T Consensus        64 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          64 --NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             --CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence              8899999999999999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=5.3e-12  Score=87.00  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=82.6

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc---------------cccccccCc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK---------------LGFNLYFGF  148 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~---------------~~~~~~~~~  148 (188)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..|+++..........               ....+....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPL   81 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCC
Confidence            57889999999999999999999999999988999999999999876533221110               112343434


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      . +.+++++.++++.|.+++.+.+||+++ +.+.|++|.
T Consensus        82 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~  120 (126)
T cd04642          82 ITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITL  120 (126)
T ss_pred             eEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEH
Confidence            4 899999999999999999999999986 789999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.39  E-value=2e-12  Score=86.76  Aligned_cols=101  Identities=30%  Similarity=0.352  Sum_probs=84.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.++++.|.+.+++.+||+|+++++  ++..|+.+...                      .......++.++|.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~----------------------~~~~~~~~~~~~~~~-   64 (111)
T cd04612           8 VDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPA----------------------EGREATVLVGDVMTR-   64 (111)
T ss_pred             CCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHh----------------------cCcccccCHHHhccC-
Confidence            45689999999999999999999888888  99999873210                      001111467788988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        65 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          65 -DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             -CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence             8999999999999999999999999999998799999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.39  E-value=2e-12  Score=87.51  Aligned_cols=97  Identities=20%  Similarity=0.230  Sum_probs=80.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      .-.++.++.+.|.+++.+.+||+|+    |+++  ++.+|+...                          .....++.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~--------------------------~~~~~~v~~~   62 (114)
T cd04602           9 PDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL--------------------------TDSETPLSEV   62 (114)
T ss_pred             CCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh--------------------------hccCCCHHHh
Confidence            3457899999999999999999984    7888  998887610                          0112458899


Q ss_pred             cccCCCeeEEcC--CCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           79 MTKKEDLHAVKT--TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        79 m~~~~~~~~v~~--~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      |..  .+..+..  ++++.++++.|.+++...+||++++|+++|+||.+|+++
T Consensus        63 ~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          63 MTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             cCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            987  6777766  999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.39  E-value=2e-12  Score=86.71  Aligned_cols=101  Identities=25%  Similarity=0.257  Sum_probs=84.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.+|.+.|.++++..+||+++++++  ++.+|+.+...                      .......++.++|.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~----------------------~~~~~~~~v~~~~~~-   64 (111)
T cd04611           8 PDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA----------------------SGPDLQTPVGEVMSS-   64 (111)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh----------------------cCCCCCcCHHHhcCC-
Confidence            44688999999999899999999988888  99999873210                      001135678899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++..+++++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        65 -~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          65 -PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             -CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence             8899999999999999999999999999998899999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.39  E-value=2e-13  Score=94.12  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=83.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.++++.|.++++..+||+| +|+++  ++.+++++....                     .......++.++|.+
T Consensus         9 ~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~---------------------~~~~~~~~v~~im~~   67 (124)
T cd04608           9 PTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS---------------------GKVQPSDPVSKALYK   67 (124)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH---------------------hccCCCCcHHHHhhc
Confidence            346899999999999999999999 78888  999998732100                     112345689999999


Q ss_pred             CCCeeEEcCCCCHHHHHHHHH---------hcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           82 KEDLHAVKTTTTVDEALERLV---------EKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~---------~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                        ++.++.+++++.++.+++.         +.+...+||++++|+++|+||.+|++++
T Consensus        68 --~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          68 --QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             --cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence              8999999999999999653         3356778899888999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.39  E-value=6.7e-12  Score=84.44  Aligned_cols=102  Identities=22%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc-c-cccccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS-M-RKLGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-~-~~~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++.++.++.++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+....... . .++.++|.+... +.+++...+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   81 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDAL   81 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHHH
Confidence            67889999999999999999999999999988999999999999876543222 1 456777766666 99999999999


Q ss_pred             HHHhccCceEEEEEeC--CEeeceeec
Q 029781          161 KFVGGINCGFLLTVEG--AMTANIISS  185 (188)
Q Consensus       161 ~~l~~~~~~~~~vv~~--~~~~giit~  185 (188)
                      +.|...+...+||+++  +.+.|++|.
T Consensus        82 ~~~~~~~~~~~~Vv~~~~~~~~Gvvt~  108 (114)
T cd04613          82 KKFEDSDYEQLPVVDDDPGKLLGILSR  108 (114)
T ss_pred             HHHhhCCccEeeEEeCCCCEEEEEEEh
Confidence            9999999999999986  899999985

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.39  E-value=4.6e-12  Score=106.12  Aligned_cols=102  Identities=19%  Similarity=0.238  Sum_probs=87.7

Q ss_pred             cccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      -.++.+|.++|.+++++.+||+|+    ++++  +|.+|+..                          ......++.++|
T Consensus       116 d~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~--------------------------v~~~~~~V~eIM  169 (505)
T PLN02274        116 SSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF--------------------------VNDRETKLSEVM  169 (505)
T ss_pred             CCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh--------------------------ccccCCcHHHHh
Confidence            458999999999999999999984    6888  99999861                          112356799999


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      ++..++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|++++...
T Consensus       170 t~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        170 TSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             ccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            972237899999999999999999999999999988999999999999987754

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.39  E-value=2.3e-12  Score=110.19  Aligned_cols=115  Identities=17%  Similarity=0.074  Sum_probs=98.0

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--ccccccccccc
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYF  146 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~  146 (188)
                      .....+++|+|++  ++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+......  ....+.++|.+
T Consensus       443 ~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~  520 (574)
T PRK01862        443 RLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT  520 (574)
T ss_pred             HHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccC
Confidence            3456789999998  8899999999999999999999999999998899999999999987543222  22456778877


Q ss_pred             Ccc-cCCcchHHHHHHHHhccCceEEEEEeC---CEeeceeec
Q 029781          147 GFN-SGNAYFARWLLKFVGGINCGFLLTVEG---AMTANIISS  185 (188)
Q Consensus       147 ~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~---~~~~giit~  185 (188)
                      ... +.+++++.++.+.|.+++...+||+|+   +++.|+||.
T Consensus       521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~  563 (574)
T PRK01862        521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYK  563 (574)
T ss_pred             CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEH
Confidence            666 999999999999999999999999975   379999985

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=2.1e-12  Score=86.97  Aligned_cols=103  Identities=32%  Similarity=0.350  Sum_probs=84.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.+|.+.|.+++++.+||+++|+++  ++..+++....           .         ........++.++|.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~-----------~---------~~~~~~~~~~~~~~~~-   66 (113)
T cd04622           8 PDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAV-----------A---------EGRDPDTTTVGDVMTR-   66 (113)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHh-----------h---------ccCCcccCCHHHhccC-
Confidence            45688999999999999999999988888  99988762100           0         0011122358899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       .+.++.+++++.++++.|.+.+.+.+||++++|+++|+++..|+++
T Consensus        67 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          67 -GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             -CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence             8899999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.39  E-value=1.7e-12  Score=87.44  Aligned_cols=102  Identities=21%  Similarity=0.199  Sum_probs=83.2

Q ss_pred             cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      -.++.++.+.|.+++.+.+||+++++++  ++..|++.....                    ........++.++|.+  
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~--------------------~~~~~~~~~v~~i~~~--   66 (113)
T cd04587           9 TTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVA--------------------QGLDPESTLVERVMTP--   66 (113)
T ss_pred             CCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHh--------------------cCCCcCcCCHHHhcCC--
Confidence            3578999999998999999999988888  999998621100                    0011112578899987  


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      ++.++.+++++.++++.|.+++...+||++++|+++|++|..|++.
T Consensus        67 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          67 NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            8889999999999999999999999999998799999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.39  E-value=1.9e-12  Score=86.97  Aligned_cols=101  Identities=30%  Similarity=0.303  Sum_probs=83.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.++.+.|.++++..+||+|+++++  ++..++......                     .......++.++|.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~---------------------~~~~~~~~i~~~~~~-   65 (111)
T cd04800           8 PDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVA---------------------EGLDPDTPVSEVMTA-   65 (111)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhc---------------------cCCCccCCHHHHhCC-
Confidence            34678999999999899999999988888  999997731100                     011123578899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++..+++++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          66 -PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             -CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence             8999999999999999999999999999986 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=2.1e-12  Score=89.67  Aligned_cols=121  Identities=22%  Similarity=0.208  Sum_probs=84.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+++.+|.+.|.+.+++++||+| +|+++  ++..++.+.............+....... ..........++.++|.+
T Consensus         8 ~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~   86 (132)
T cd04636           8 KDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD-ESKIKKLLGKKVEEIMTK   86 (132)
T ss_pred             CCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccc-hHHHHHHcCCCHHHhccC
Confidence            446899999999999999999999 78888  99988874221100000000000000000 000001112378899988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++..+.+++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        87 --~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          87 --KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             --CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence              8899999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.39  E-value=3.5e-12  Score=106.87  Aligned_cols=143  Identities=23%  Similarity=0.260  Sum_probs=105.8

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc-c
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT-K   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~   81 (188)
                      -.++.++.++|.+++++.+||+| +++++  +|.+|+...                          .....++.++|. .
T Consensus       103 ~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~--------------------------~~~~~~V~dim~~~  156 (486)
T PRK05567        103 DTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFE--------------------------TDLSQPVSEVMTKE  156 (486)
T ss_pred             CCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc--------------------------ccCCCcHHHHcCCC
Confidence            35889999999999999999999 88999  999998621                          112347899998 5


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc------ccccccccCcccCCcch
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR------KLGFNLYFGFNSGNAYF  155 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  155 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.........      .++..|..    .+ ..
T Consensus       157 --~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~----~~-~~  229 (486)
T PRK05567        157 --RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGV----GA-DN  229 (486)
T ss_pred             --CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeeccc----Cc-ch
Confidence              7899999999999999999999999999999999999999999997654321110      12222221    22 22


Q ss_pred             HHHHHHHHhccCceEEEEEe--CCEeecee
Q 029781          156 ARWLLKFVGGINCGFLLTVE--GAMTANII  183 (188)
Q Consensus       156 ~~~v~~~l~~~~~~~~~vv~--~~~~~gii  183 (188)
                       .+..+.|.+.+.+++ +++  ++...+++
T Consensus       230 -~e~a~~L~~agvdvi-vvD~a~g~~~~vl  257 (486)
T PRK05567        230 -EERAEALVEAGVDVL-VVDTAHGHSEGVL  257 (486)
T ss_pred             -HHHHHHHHHhCCCEE-EEECCCCcchhHH
Confidence             455566667788864 555  35554443

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.39  E-value=5.5e-12  Score=104.26  Aligned_cols=116  Identities=22%  Similarity=0.187  Sum_probs=100.5

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEc-CCCcEEEEEehHHHhhchhccCcccccccccccC
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFG  147 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~  147 (188)
                      ...+.+++++|+|+.++..++.+.+..++.+.+.+++++++||++ +.+.++|+++.+|++.+.............+.++
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~  281 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPP  281 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCC
Confidence            456789999999999999999999999999999999999999998 4578999999999998776554312223345577


Q ss_pred             cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781          148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS  184 (188)
Q Consensus       148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit  184 (188)
                      ..+++..++.++++.|.+.+.++++|+|+ |.+.|+||
T Consensus       282 ~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVT  319 (429)
T COG1253         282 LFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVT  319 (429)
T ss_pred             eEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeE
Confidence            77999999999999999999999999997 89999998

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.38  E-value=7.7e-12  Score=84.35  Aligned_cols=102  Identities=12%  Similarity=0.060  Sum_probs=86.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc-cCcccccccccccCcc-cCCcchHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI-SGSMRKLGFNLYFGFN-SGNAYFARWLLK  161 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~v~~  161 (188)
                      .+.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.... ......+.++|.+... +.+++.+.++++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~   82 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILA   82 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence            45788999999999999999999999999988999999999999865432 2223456777876666 999999999999


Q ss_pred             HHhccCceEEEEEe-CCEeeceeec
Q 029781          162 FVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       162 ~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .|.+++...+||++ ++.+.|++|.
T Consensus        83 ~~~~~~~~~~~Vv~~~~~~~Gvit~  107 (113)
T cd04607          83 LMRERSIRHLPILDEEGRVVGLATL  107 (113)
T ss_pred             HHHHCCCCEEEEECCCCCEEEEEEh
Confidence            99999999999997 5789999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=7e-12  Score=87.07  Aligned_cols=102  Identities=24%  Similarity=0.288  Sum_probs=84.9

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcc----------------------cccc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSM----------------------RKLG  141 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~----------------------~~~~  141 (188)
                      ++.++.++.++.++++.|.+.+.+++||+|++|+++|+++..++++........                      .++.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE   81 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence            578899999999999999999999999999889999999999998765432110                      1455


Q ss_pred             cccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          142 FNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       142 ~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      ++|.+... +.+++.+.++.++|.+.+...+||++++...|++|.
T Consensus        82 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~  126 (132)
T cd04636          82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISR  126 (132)
T ss_pred             HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEH
Confidence            66655545 888999999999999999999999988999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=5.5e-12  Score=86.48  Aligned_cols=102  Identities=20%  Similarity=0.182  Sum_probs=85.3

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCc-------------ccccccccccCcc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGS-------------MRKLGFNLYFGFN  149 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~-------------~~~~~~~~~~~~~  149 (188)
                      ++.++.++.++.++++.|.+.+.+.+||+|++ |+++|+++..|+++++.....             ..++.+++.+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI   81 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCce
Confidence            57789999999999999999999999999987 899999999999976643221             1245566665555


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                       +.+++.+.++++.|.+.+...++|+++ +.+.|+||.
T Consensus        82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~  119 (125)
T cd04631          82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTE  119 (125)
T ss_pred             EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEH
Confidence             999999999999999999999999986 899999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.38  E-value=1.4e-12  Score=104.18  Aligned_cols=102  Identities=19%  Similarity=0.077  Sum_probs=85.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++.+.+||+| +|+++  +|.+|+.+...                     ........++.++|.+
T Consensus       219 ~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~---------------------~~~~~~~~~v~~im~~  277 (326)
T PRK10892        219 KTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD---------------------MGIDLRQASIADVMTP  277 (326)
T ss_pred             CCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh---------------------cCCCcccCCHHHhcCC
Confidence            357889999999999988888888 88999  99999863110                     0012334679999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                        ++.++.+++++.++++.|.+++.+.+||++ +|+++|+||..|++++
T Consensus       278 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        278 --GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             --CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence              899999999999999999999999999998 5899999999999875

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=5.7e-12  Score=86.42  Aligned_cols=102  Identities=14%  Similarity=0.015  Sum_probs=82.1

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCccc-----------ccccccccCcc-c
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMR-----------KLGFNLYFGFN-S  150 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~-----------~~~~~~~~~~~-~  150 (188)
                      ++.++.+++++.++++.|.+++.+++||+|++ |+++|+++..|+++.+.......           .....+...+. +
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI   81 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence            57789999999999999999999999999987 89999999999987543221110           01124545444 8


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .+++++.++++.|.+++...+||+++ +.+.|+||.
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~  117 (123)
T cd04627          82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISV  117 (123)
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeH
Confidence            99999999999999999999999974 788999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.38  E-value=2.2e-12  Score=85.97  Aligned_cols=94  Identities=20%  Similarity=0.284  Sum_probs=80.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.++++.|.+.+++.+||+|+++++  ++.+++.+.                          .  ..++.++|.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~--------------------------~--~~~~~~~~~~-   58 (104)
T cd04594           8 DYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENA--------------------------T--YGDVVDYIVR-   58 (104)
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhh--------------------------c--ccchhhhhhc-
Confidence            45689999999999999999999888888  998887721                          0  1246778887 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       .+.+++++.++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus        59 -~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          59 -GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             -CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence             789999999999999999999999999998 589999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1e-12  Score=90.61  Aligned_cols=107  Identities=17%  Similarity=0.111  Sum_probs=80.5

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|++.|.+++...+||+| +|+++  ++..|+.+....       +....        ........++.++|.+ 
T Consensus         9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~-------~~~~~--------~~~~~~~~~v~~im~~-   72 (126)
T cd04640           9 DTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI-------KRIQE--------GGISRSELTVADVMTP-   72 (126)
T ss_pred             CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh-------HHHHH--------cCCCchheEHHHhcCc-
Confidence            45889999999999999999999 78988  999998731100       00000        0011234678999986 


Q ss_pred             CCeeE--E----cCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhh
Q 029781           83 EDLHA--V----KTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~--v----~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~  129 (188)
                       ++..  +    .+++++.++++.|.+++.+.+||+|++ |+++|+||..|+++
T Consensus        73 -~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          73 -KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             -hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence             5433  3    368899999999999999999999976 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=2.1e-12  Score=88.57  Aligned_cols=109  Identities=17%  Similarity=0.137  Sum_probs=80.6

Q ss_pred             cccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -.++.+|++.|.++++.++||+| + |+++  ++..|+++...... .   ..   ..     ..........+.++|..
T Consensus         9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~-~---~~---~~-----~~~~~~~~~~~~~~~~~   76 (123)
T cd04627           9 TASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENA-R---SF---PG-----LDPLYPIPLRDLTIGTS   76 (123)
T ss_pred             CCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhH-H---hc---cc-----hhhhhhhhhhhcccCcC
Confidence            35889999999999999999999 6 8888  99999874210000 0   00   00     00000011233457777


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL  128 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~  128 (188)
                        ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+.
T Consensus        77 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          77 --DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             --CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence              889999999999999999999999999999889999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.37  E-value=5.3e-12  Score=105.02  Aligned_cols=109  Identities=15%  Similarity=0.164  Sum_probs=95.8

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-  149 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-  149 (188)
                      ...++.++|.+  ++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+....    ...++.++|.+.+. 
T Consensus        87 ~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----~~~~V~diMt~~~it  160 (479)
T PRK07807         87 AWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----RFTQVRDVMSTDLVT  160 (479)
T ss_pred             hhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----cCCCHHHhccCCceE
Confidence            35677889998  999999999999999999999999999999889999999999996432    22457888887666 


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+++.+.+++++|.+++...+||++ ++.+.|+||.
T Consensus       161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~  197 (479)
T PRK07807        161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTR  197 (479)
T ss_pred             ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEH
Confidence            99999999999999999999999998 5899999985

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.37  E-value=1.3e-11  Score=82.20  Aligned_cols=97  Identities=13%  Similarity=0.079  Sum_probs=82.8

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.+++++.++.++++.|.+.+.+.+||+|++|+++|+++..|+++...     ..+.+++.+... +.+++.+.++++.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----GCCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----cchhhhcccCCEEECCCCCHHHHHHH
Confidence            5778999999999999999999999999998899999999999986532     124666766545 8889999999999


Q ss_pred             HhccCceEEEEEeC-CEeeceeec
Q 029781          163 VGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      |.+++...+||+++ +.+.|++|.
T Consensus        77 ~~~~~~~~~~Vv~~~~~~~Gvi~~  100 (106)
T cd04582          77 MFAHDMSWLPCVDEDGRYVGEVTQ  100 (106)
T ss_pred             HHHCCCCeeeEECCCCcEEEEEEH
Confidence            99999999999975 689999985

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.37  E-value=1.4e-11  Score=82.62  Aligned_cols=100  Identities=19%  Similarity=0.239  Sum_probs=83.9

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.++.++.++.++++.|.+++.+.+||+|++|+++|+++.+++++......  ..+.++|..... +.+++.+.++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--~~~~~~~~~~~~~v~~~~~l~~~~~~   80 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--KSVEDIMTRNVITATPDEPIDVAARK   80 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--cCHHHhcCCCCeEECCCCcHHHHHHH
Confidence            6788999999999999999999999999998899999999999987554322  235666655555 8889999999999


Q ss_pred             HhccCceEEEEEe-CCEeeceeec
Q 029781          163 VGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      |.+++...+||++ ++.+.|++|.
T Consensus        81 ~~~~~~~~~~Vv~~~~~~~G~v~~  104 (110)
T cd04605          81 MERHNISALPVVDAENRVIGIITS  104 (110)
T ss_pred             HHHhCCCEEeEECCCCcEEEEEEH
Confidence            9999988888887 4799999985

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.36  E-value=5.3e-12  Score=87.01  Aligned_cols=102  Identities=24%  Similarity=0.213  Sum_probs=83.4

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++++.....+  ...++.++|.+.+. +.+++.+.++.
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v~   82 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLS   82 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHHH
Confidence            6789999999999999999999999999998899999999999997554332  34568889987777 99999999998


Q ss_pred             HHHhcc---------CceEEEEEe-CCEeeceeec
Q 029781          161 KFVGGI---------NCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       161 ~~l~~~---------~~~~~~vv~-~~~~~giit~  185 (188)
                      +++..+         +...+||++ ++.+.|+||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~  117 (124)
T cd04608          83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTK  117 (124)
T ss_pred             hhcccCCceEEEeccccccccccccccceEEEEeh
Confidence            865432         445556665 4899999996

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.4e-11  Score=83.23  Aligned_cols=100  Identities=22%  Similarity=0.162  Sum_probs=81.8

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc-------ccccccccccCcc-cCCcch
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS-------MRKLGFNLYFGFN-SGNAYF  155 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~  155 (188)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+++.......       ..++.++|.+.+. +.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~   81 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD   81 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence            57889999999999999999999999999988999999999999876543211       2346677776555 888999


Q ss_pred             HHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          156 ARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       156 ~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.++++.|.+.+  .+||++ ++.+.|++|.
T Consensus        82 l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~  110 (116)
T cd04643          82 IEEILHLLIDQP--FLPVVDDDGIFIGIITR  110 (116)
T ss_pred             HHHHHHHHhcCC--ceeEEeCCCeEEEEEEH
Confidence            999999998754  467886 5899999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.5e-11  Score=84.80  Aligned_cols=102  Identities=21%  Similarity=0.194  Sum_probs=81.9

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch-----hc---cCcccccccccccCcc-c----
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD-----SI---SGSMRKLGFNLYFGFN-S----  150 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~-----~~---~~~~~~~~~~~~~~~~-~----  150 (188)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+.+..     ..   .....++.++|.+... .    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            467899999999999999999999999999889999999999998522     11   1223446777865433 2    


Q ss_pred             --CCcchHHHHHHHHhccCceEEEEEeC--CEeeceeec
Q 029781          151 --GNAYFARWLLKFVGGINCGFLLTVEG--AMTANIISS  185 (188)
Q Consensus       151 --~~~~~~~~v~~~l~~~~~~~~~vv~~--~~~~giit~  185 (188)
                        .+++++.++++.|.+++...+||+++  +.+.|+||.
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~  120 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIIST  120 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeH
Confidence              25788899999999999999999986  589999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.35  E-value=1.9e-11  Score=81.87  Aligned_cols=101  Identities=19%  Similarity=0.209  Sum_probs=84.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-cccccccccccCcc-cCCcchHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-SMRKLGFNLYFGFN-SGNAYFARWLLK  161 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~v~~  161 (188)
                      ++.++.++.++.++++.|.+.+.+.+||+++ |+++|+++.+|+++...... ....+.++|.+... +.+++.+.++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~   80 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ   80 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHHHH
Confidence            5678999999999999999989999999986 89999999999987664333 23446677765555 888999999999


Q ss_pred             HHhccCceEEEEEeC-CEeeceeec
Q 029781          162 FVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       162 ~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .|.+.+...++|+++ +.+.|+++.
T Consensus        81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~  105 (111)
T cd04611          81 LMREHGIRHLVVVDDDGELLGLLSQ  105 (111)
T ss_pred             HHHHcCCeEEEEECCCCcEEEEEEh
Confidence            999999988899975 888999984

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.35  E-value=1.4e-11  Score=82.50  Aligned_cols=98  Identities=22%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.++.+++++.++.+.|.+++.+.+||+|++|+++|+++..+++...    ...++.++|..... +.++.++.++++.
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~~v~~~~~l~~~~~~   78 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----PDTTIEKVMTKNPITVNPKTSVASVAHM   78 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----ccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence            678899999999999999999999999999889999999999998542    23346677765544 8999999999999


Q ss_pred             HhccCceEEEEEe-CCEeeceeec
Q 029781          163 VGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      |.+++...+||++ ++.+.|++|.
T Consensus        79 ~~~~~~~~~~Vv~~~~~~~G~it~  102 (108)
T cd04596          79 MIWEGIEMLPVVDDNKKLLGIISR  102 (108)
T ss_pred             HHHcCCCeeeEEcCCCCEEEEEEH
Confidence            9999999999997 6899999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.34  E-value=4.2e-12  Score=85.31  Aligned_cols=101  Identities=22%  Similarity=0.172  Sum_probs=83.1

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.++++.|.+++...+||+|++++.  ++.++++....                     ........++.++|.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~---------------------~~~~~~~~~i~~~~~~-   65 (111)
T cd04589           8 ASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVL---------------------LDGLPSSTPVGEIATF-   65 (111)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHH---------------------cCCCCCCCCHHHHhCC-
Confidence            44589999999999999999999877778  99999773110                     0011234578899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++..+++++++.++++.|.+++...+||+++ |+++|++|..|+++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          66 -PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             -CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence             8999999999999999999999999999985 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.6e-11  Score=84.64  Aligned_cols=102  Identities=19%  Similarity=0.166  Sum_probs=83.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc---------------CcccccccccccCc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS---------------GSMRKLGFNLYFGF  148 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---------------~~~~~~~~~~~~~~  148 (188)
                      ++.++.++.++.++++.|.+.+.+.+||+|++|+++|++|..|+...+...               .....+.++|....
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV   81 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence            567899999999999999999999999999889999999999998653211               11223566775555


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEeC---CEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVEG---AMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~---~~~~giit~  185 (188)
                      . +.++..+.+++++|.+.+...+||+++   +.+.|+||.
T Consensus        82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~  122 (128)
T cd04632          82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTK  122 (128)
T ss_pred             ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEh
Confidence            4 889999999999999988888888854   899999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=3.5e-12  Score=85.80  Aligned_cols=102  Identities=19%  Similarity=0.132  Sum_probs=81.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.++++.|.+++...++|.++|+++  ++.+|+.+....                    ........++.++|.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~--------------------~~~~~~~~~v~~~~~~-   66 (112)
T cd04625           8 PETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQ--------------------HGAGVLDTTVRAIMNP-   66 (112)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHh--------------------cCCchhcCCHHHHhCC-
Confidence            34588999999988888777777788888  999998732100                    0011123578999987 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus        67 -~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          67 -EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             -CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence             788999999999999999999999999998 589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.34  E-value=2.5e-11  Score=81.44  Aligned_cols=101  Identities=22%  Similarity=0.154  Sum_probs=84.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++.+++.+.++.++.+.|.+.+.+.+||+|+ |+++|+++..++++.....+  ....+.+++...+. +.+++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            6788999999999999999988999999997 99999999999986432221  12345666655555 89999999999


Q ss_pred             HHHhccCceEEEEEeCCEeeceeec
Q 029781          161 KFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       161 ~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +.|.+++...+||++++.+.|++|.
T Consensus        81 ~~~~~~~~~~~~Vv~~~~~~Giit~  105 (111)
T cd04800          81 LLMLERGIHHLPVVDDGRLVGVISA  105 (111)
T ss_pred             HHHHHcCCCeeeEeECCEEEEEEEH
Confidence            9999999999999988999999984

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.34  E-value=1.2e-11  Score=103.55  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=86.9

Q ss_pred             cccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      -.++.+|.++|.+++++.+||+|+    ++++  +|.+|+..                          ......++.++|
T Consensus       112 d~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~--------------------------~~~~~~~V~diM  165 (495)
T PTZ00314        112 NHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF--------------------------VKDKSTPVSEVM  165 (495)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh--------------------------cccCCCCHHHhh
Confidence            458999999999999999999984    6888  99999761                          112246799999


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ++..++.+++++.++.+++++|.+++...+||+|++++++|+||.+|+++...
T Consensus       166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            86446789999999999999999999999999999999999999999997654

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.34  E-value=3.8e-12  Score=85.45  Aligned_cols=99  Identities=18%  Similarity=0.173  Sum_probs=80.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|++.|.+++++.+||++ + |+++  ++..++.+...                       .......+.++| 
T Consensus         8 ~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~-----------------------~~~~~~~~~~~~-   63 (111)
T cd04590           8 ADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA-----------------------EGEEDLDLRDLL-   63 (111)
T ss_pred             CCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH-----------------------cCCCcCCHHHHh-
Confidence            346889999999999999999999 6 8888  99999874210                       001113566666 


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      .  ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        64 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          64 R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            4  5788999999999999999999999999998899999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=4.8e-12  Score=86.30  Aligned_cols=110  Identities=28%  Similarity=0.415  Sum_probs=85.1

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCccccccccc-ccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFF-TVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-.++.++++.|.+++++.+||+|+|+++  ++..++.+..... ...+.     .       .........++.++|..
T Consensus         8 ~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~   75 (121)
T cd04633           8 PDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRD-----R-------HQERRIRNLPVSDIMTR   75 (121)
T ss_pred             CCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccc-----h-------hhhhhhhccCHHHHccC
Confidence            34688999999999999999999988888  9999987422110 00000     0       00011234578889988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus        76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          76 --PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             --CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence              8999999999999999999999999999997 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.3e-11  Score=81.86  Aligned_cols=102  Identities=18%  Similarity=0.188  Sum_probs=83.9

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.....+  ...++.++|..... +.+++.+.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            4678899999999999999999999999998899999999999987432221  23346677765555 88899999999


Q ss_pred             HHHhccCceEEEEEeC-CEeeceeec
Q 029781          161 KFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       161 ~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +.|.+.+...+||+++ +.+.|++|.
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~  107 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTE  107 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEH
Confidence            9999989888899975 699999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.33  E-value=5e-12  Score=104.11  Aligned_cols=113  Identities=17%  Similarity=0.165  Sum_probs=101.3

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGF  148 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~  148 (188)
                      -.+++.+++..  +++++++.+++.+|.+.|..+|++.+.++++++...||||.+|+....-..+  ...+++++|+.++
T Consensus       147 ~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~  224 (610)
T COG2905         147 ILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPV  224 (610)
T ss_pred             HHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCc
Confidence            34678999998  9999999999999999999999999999999999999999999997654333  3556899998777


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      . +...+++.+++-+|.++++.++||.++|...|++|-
T Consensus       225 ~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~  262 (610)
T COG2905         225 ISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTL  262 (610)
T ss_pred             eeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeH
Confidence            7 999999999999999999999999999999999973

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.33  E-value=2.7e-11  Score=80.40  Aligned_cols=97  Identities=19%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.++.+++++.++++.|.+++.+.+||+| +++++|+++..++.+...    ...+.++|.+... +.+++.+.++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----~~~~~~~~~~~~~~v~~~~~l~~~~~~   76 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----NRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence            567899999999999999999999999998 589999999999987432    2335666766555 8999999999999


Q ss_pred             HhccCceEEEEEeCCEeeceeec
Q 029781          163 VGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      |.+++...+||++++.+.|++|.
T Consensus        77 ~~~~~~~~~~Vv~~~~~~G~it~   99 (105)
T cd04599          77 MEEKKIERLPVLRERKLVGIITK   99 (105)
T ss_pred             HHHcCCCEeeEEECCEEEEEEEH
Confidence            99999999999999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.33  E-value=4.8e-12  Score=75.19  Aligned_cols=55  Identities=42%  Similarity=0.601  Sum_probs=52.1

Q ss_pred             cccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        75 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      ++++|.+  ++.++++++++.++++.|.+++.+++||+|++|+++|++|.+|+++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            4689999  999999999999999999999999999999999999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.33  E-value=2.3e-11  Score=81.54  Aligned_cols=101  Identities=27%  Similarity=0.289  Sum_probs=84.0

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc-ccccccccCcc-cCCcchHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR-KLGFNLYFGFN-SGNAYFARWLLK  161 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~v~~  161 (188)
                      ++.++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+......... .+.+.+.+... +.+++...++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK   80 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHHH
Confidence            6788999999999999999999999999997 99999999999987664322211 34555655555 899999999999


Q ss_pred             HHhccCceEEEEEeC-CEeeceeec
Q 029781          162 FVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       162 ~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .|.+++...+||+++ +...|++|.
T Consensus        81 ~~~~~~~~~~~V~~~~~~~~G~it~  105 (111)
T cd04612          81 RMAERDIGRLPVVDDSGRLVGIVSR  105 (111)
T ss_pred             HHHhCCCCeeeEEcCCCCEEEEEEH
Confidence            999999998999975 899999984

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.8e-11  Score=81.36  Aligned_cols=101  Identities=14%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc---CcccccccccccCcc-cCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS---GSMRKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      ++.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+++.....   ....++.++|..... +.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   80 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV   80 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence            567899999999999999888887777776 58999999999998765421   122346777766555 8889999999


Q ss_pred             HHHHhccCceEEEEEeCCEeeceeec
Q 029781          160 LKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      ++.|.+++...+||++++.+.|++|.
T Consensus        81 ~~~m~~~~~~~l~Vv~~~~~~Gvvt~  106 (112)
T cd04625          81 RRLMVERHLRYLPVLDGGTLLGVISF  106 (112)
T ss_pred             HHHHHHcCCCeeeEEECCEEEEEEEH
Confidence            99999999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.33  E-value=3.7e-11  Score=80.24  Aligned_cols=99  Identities=19%  Similarity=0.174  Sum_probs=83.9

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++..+.++.++.++++.|.+++...+||+|++|+++|+++..|++.....   ..++.++|.+... +.+++.+.++.+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---~~~v~~~~~~~~~~v~~~~~~~~~~~~   79 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---AKSLEDIMLEDVFTVQPDASLRDVLGL   79 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---CCcHhHhhcCCceEECCCCcHHHHHHH
Confidence            57789999999999999999999999999988999999999999875421   2345666765555 8999999999999


Q ss_pred             HhccCceEEEEEe-CCEeeceeec
Q 029781          163 VGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      |.+++...+||++ ++.+.|++|.
T Consensus        80 ~~~~~~~~~~vv~~~g~~~Gvit~  103 (109)
T cd04583          80 VLKRGPKYVPVVDEDGKLVGLITR  103 (109)
T ss_pred             HHHcCCceeeEECCCCeEEEEEeh
Confidence            9998999999997 5789999985

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.33  E-value=1.5e-11  Score=102.17  Aligned_cols=99  Identities=23%  Similarity=0.323  Sum_probs=86.4

Q ss_pred             cccHHHHHHHHhcCcccCCceee-c---CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-L---PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~---~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      -.++.++.++|.+++++++||+| +   ++++  +|.+|++..                          .....++.++|
T Consensus        96 ~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~--------------------------~~~~~~V~dvm  149 (450)
T TIGR01302        96 ETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV--------------------------KDKGKPVSEVM  149 (450)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh--------------------------hcCCCCHHHhh
Confidence            45889999999999999999999 5   6888  999998621                          11245789999


Q ss_pred             c-cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           80 T-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        80 ~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      . .  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++...
T Consensus       150 ~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       150 TRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             CCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            8 5  7899999999999999999999999999999999999999999998754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.9e-11  Score=80.62  Aligned_cols=101  Identities=20%  Similarity=0.152  Sum_probs=84.0

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc---CcccccccccccCcc-cCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS---GSMRKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      ++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.....   ....++.++|.+... +.+++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA   80 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence            5778999999999999999999999999996 5999999999999754322   122345677766555 8899999999


Q ss_pred             HHHHhccCceEEEEEeCCEeeceeec
Q 029781          160 LKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      ++.|.+++...+||++++.+.|+++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~Gvi~~  106 (112)
T cd04802          81 AKLMAKHGIKRLPVVDDDELVGIVTT  106 (112)
T ss_pred             HHHHHHcCCCeeEEeeCCEEEEEEEh
Confidence            99999999988999988889999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=4.3e-12  Score=86.72  Aligned_cols=113  Identities=20%  Similarity=0.204  Sum_probs=85.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +-.++.+|.+.|.+++++.+||+|+|+++  ++.+++.+....+.....    ..       .........++.++|.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~-   75 (122)
T cd04637           8 MDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAG----ET-------EKDLATLNRRAHQIMTR-   75 (122)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhcccc----ch-------HHHHHHHHhHHHHhhcC-
Confidence            44688999999999999999999988888  999998732110000000    00       00000113468899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                       ++..+.+++++.++++.|.+++...+||+|++|+++|+++..|++++
T Consensus        76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~  122 (122)
T cd04637          76 -DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY  122 (122)
T ss_pred             -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence             89999999999999999999999999999988999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.32  E-value=2.8e-11  Score=82.38  Aligned_cols=102  Identities=25%  Similarity=0.252  Sum_probs=84.6

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-----------CcccccccccccCcc-cC
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-----------GSMRKLGFNLYFGFN-SG  151 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-----------~~~~~~~~~~~~~~~-~~  151 (188)
                      ++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++.+.....           ....++.++|.+... +.
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~   81 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH   81 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence            567899999999999999999999999999889999999999998654311           112335566665555 88


Q ss_pred             CcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          152 NAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       152 ~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +++++.++++.|.+.+...+||++++.+.|++|.
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~  115 (121)
T cd04584          82 PLDTVEEAALLMREHRIGCLPVVEDGRLVGIITE  115 (121)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEH
Confidence            9999999999999999988899988999999984

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.32  E-value=3.9e-11  Score=79.87  Aligned_cols=94  Identities=18%  Similarity=0.112  Sum_probs=80.7

Q ss_pred             eEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHHHh
Q 029781           86 HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKFVG  164 (188)
Q Consensus        86 ~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~  164 (188)
                      .+++++.++.++++.|.+.+.+.+||+|+ |+++|+++..++.+...     .++.+.|.+... +.++.++.++++.|.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----~~~~~~~~~~~~~v~~~~~l~~a~~~~~   77 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----GDVVDYIVRGIPYVRLTSTAEEAWEVMM   77 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence            57899999999999999999999999997 99999999999986432     224556655555 899999999999999


Q ss_pred             ccCceEEEEEeCCEeeceeec
Q 029781          165 GINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       165 ~~~~~~~~vv~~~~~~giit~  185 (188)
                      +++...+||++++.+.|++|.
T Consensus        78 ~~~~~~~~Vv~~~~~iGvit~   98 (104)
T cd04594          78 KNKTRWCPVVDDGKFKGIVTL   98 (104)
T ss_pred             HcCcceEEEEECCEEEEEEEH
Confidence            999999999999999999984

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.32  E-value=2.3e-11  Score=81.89  Aligned_cols=102  Identities=19%  Similarity=0.154  Sum_probs=86.3

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcc--cccccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSM--RKLGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++++.+......  .++.++|.+... +.++....+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   82 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEAL   82 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHHH
Confidence            567789999999999999988889999999889999999999999876543322  347778876666 89999999999


Q ss_pred             HHHhccCceEEEEEe-CCEeeceeec
Q 029781          161 KFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       161 ~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      ++|..++...+||++ ++.+.|++|.
T Consensus        83 ~~~~~~~~~~~~Vv~~~~~~iG~it~  108 (114)
T cd04604          83 ELMEENKITALPVVDDNGRPVGVLHI  108 (114)
T ss_pred             HHHHHcCCCEEEEECCCCCEEEEEEH
Confidence            999999988889997 6889999985

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.6e-11  Score=82.62  Aligned_cols=101  Identities=18%  Similarity=0.130  Sum_probs=84.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC------------cccccccccccCcc-c
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG------------SMRKLGFNLYFGFN-S  150 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~------------~~~~~~~~~~~~~~-~  150 (188)
                      ++..+.+++++.++.+.|.+++.+.+||+|+ |+++|+++..++++......            ....+.++|..... +
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI   80 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence            5778999999999999999999999999996 99999999999987544221            12235566655555 8


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      .+++++.+++++|.+.+...+||++++.+.|++|.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~  115 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTR  115 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEH
Confidence            99999999999999999998899988999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.31  E-value=3.4e-12  Score=106.06  Aligned_cols=134  Identities=10%  Similarity=0.032  Sum_probs=99.9

Q ss_pred             cccHHHHHHHHhc-----CcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781            6 IPSCLTLARLNAN-----GVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD   77 (188)
Q Consensus         6 ~~sv~~a~~~m~~-----~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   77 (188)
                      -.++.+|.+.|.+     ++...+||+| +++++  ++.+|++.                           ...+.++++
T Consensus       147 ~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~---------------------------a~~~~~v~~  199 (449)
T TIGR00400       147 DYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL---------------------------AKPEEILSS  199 (449)
T ss_pred             CCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc---------------------------CCCCCcHHH
Confidence            3588999999975     4556788888 78888  99999872                           112347999


Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchH
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFA  156 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  156 (188)
                      +|.+  ++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++......    .+++|..... ..+++..
T Consensus       200 im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~----~ed~~~~~gv~~~~~~~l  273 (449)
T TIGR00400       200 IMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA----TEDFYMIAAVKPLDDSYF  273 (449)
T ss_pred             HhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh----HHHHHHhcCCCCCcchhh
Confidence            9998  8899999999999999999999999999999999999999999998775432    1344443332 2234555


Q ss_pred             HHHHHHHhccCceEEE
Q 029781          157 RWLLKFVGGINCGFLL  172 (188)
Q Consensus       157 ~~v~~~l~~~~~~~~~  172 (188)
                      ......+.+++...++
T Consensus       274 ~~~~~~~~~~R~~wL~  289 (449)
T TIGR00400       274 DTSILVMAKNRIIWLL  289 (449)
T ss_pred             hchHHHHHHhccchHH
Confidence            5555555555554433

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=6.3e-12  Score=86.71  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=84.6

Q ss_pred             cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .+-.++.+|.++|.+.+.+.+||+| +|+++  +|.+|+......   .   ....... . ...........++.++|.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~---~---~~~~~~~-~-~~~~~~~~~~~~~~~~~~   78 (128)
T cd04632           7 REDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVR---D---RDKARTG-D-RSGEKERMLDLPVYDAMS   78 (128)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhh---h---hhhcchh-h-hhhhhhhhccCcHHHHhc
Confidence            3456899999999999999999999 78888  999998732100   0   0000000 0 000001122456889998


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEc--CCCcEEEEEehHHHhh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVID--DDWKLVGVVSDYDLLA  129 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd--~~~~~~Giit~~dl~~  129 (188)
                      +  ++.+++++.++.++++.|.+.+...+||++  ++|+++|+||.+|+++
T Consensus        79 ~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          79 S--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             C--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            8  889999999999999999999999999984  4689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.30  E-value=2.3e-11  Score=101.08  Aligned_cols=111  Identities=17%  Similarity=0.130  Sum_probs=95.0

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHh-----cCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccc
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVE-----KRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFN  143 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-----~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~  143 (188)
                      .....+++++|++  ++.++++++++.++++.|.+     ++...++|+|++++++|+++.+|++...    ....++++
T Consensus       127 ~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----~~~~v~~i  200 (449)
T TIGR00400       127 SYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----PEEILSSI  200 (449)
T ss_pred             CCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----CCCcHHHH
Confidence            3456789999998  99999999999999999985     4556789999889999999999998642    23457888


Q ss_pred             cccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          144 LYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       144 ~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      |.+.+. +.++++..++.+.|.+++...+||+| ++.+.|+||.
T Consensus       201 m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~  244 (449)
T TIGR00400       201 MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTV  244 (449)
T ss_pred             hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEH
Confidence            888766 89999999999999999999999997 5899999984

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.30  E-value=9.6e-12  Score=83.16  Aligned_cols=101  Identities=20%  Similarity=0.161  Sum_probs=80.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-+++.++.+.|.+++++.+||+++++++  ++.+|+.+....                     .......++.++|.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~---------------------~~~~~~~~~~~~~~~-   65 (110)
T cd04609           8 PDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIE---------------------GKAKFSLPVREVMGE-   65 (110)
T ss_pred             CCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhc---------------------cccccCcCHHHHhcC-
Confidence            34588999999999999999999988888  999998742100                     011113568889987 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                       ++.++++++++.++.+.|.+ . ..+||++++|+++|++|.+|++++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          66 -PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             -CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence             88899999999999999988 3 347888888999999999999763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3.7e-11  Score=81.96  Aligned_cols=102  Identities=14%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc----C-------cccccccccccCcc-cC
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS----G-------SMRKLGFNLYFGFN-SG  151 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~----~-------~~~~~~~~~~~~~~-~~  151 (188)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.....    .       ....+.+++...+. +.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence            678899999999999999999999999999889999999999998642110    0       12234556655445 88


Q ss_pred             CcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          152 NAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       152 ~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +++.+.++++.|.+++...+||+++ +.+.|++|.
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~  116 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDR  116 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEh
Confidence            8999999999999999988899875 799999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.29  E-value=4.9e-11  Score=79.75  Aligned_cols=93  Identities=18%  Similarity=0.152  Sum_probs=80.9

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      ....+.++.++.++.+.+.+.+...+||+|+   +|+++|+++.+|+.+....         +|.+.+. +.+++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------~m~~~~~~v~~~~~l~~~   73 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------YIDPSPFTVSPRTSLEKV   73 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------hccCCCceECCCCcHHHH
Confidence            5678899999999999999998899999997   6899999999999876532         4544444 8889999999


Q ss_pred             HHHHhccCceEEEEEeCCEeeceeec
Q 029781          160 LKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      .+.|.+++...+||++++.+.|++|.
T Consensus        74 ~~~~~~~~~~~~pVv~~~~~~Gvvt~   99 (105)
T cd04591          74 HQLFRKLGLRHLLVVDEGRLVGIITR   99 (105)
T ss_pred             HHHHHHcCCCEEEEEECCeEEEEEEh
Confidence            99999999999999999999999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.29  E-value=4.2e-11  Score=81.40  Aligned_cols=101  Identities=23%  Similarity=0.174  Sum_probs=84.1

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc------------ccccccccccCcc-c
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS------------MRKLGFNLYFGFN-S  150 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~------------~~~~~~~~~~~~~-~  150 (188)
                      ++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..++++.......            ..++.++|.+... +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            5778999999999999999999999999997 999999999999976543210            1235566665555 8


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .+++++.++.+.|.+.+...+||+++ +.+.|++|.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~  116 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITE  116 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEH
Confidence            99999999999999999998999986 899999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.29  E-value=4e-11  Score=80.61  Aligned_cols=101  Identities=21%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cc-cccccccccCcc-cCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SM-RKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      ++.++.++.++.++++.|.+++.+.+||+++ |+++|+++..|++......+  .. .++.++|.+... +.+++.+.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~   80 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA   80 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence            5778999999999999999999999999997 99999999999984332111  11 346677766555 8999999999


Q ss_pred             HHHHhccCceEEEEEeC-CEeeceeec
Q 029781          160 LKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ++.|.+++...+||+++ +.+.|++|.
T Consensus        81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~  107 (113)
T cd04587          81 LHLMVQGKFRHLPVVDKSGQVVGLLDV  107 (113)
T ss_pred             HHHHHHcCCCcccEECCCCCEEEEEEH
Confidence            99999999988899975 889999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.3e-11  Score=83.03  Aligned_cols=102  Identities=23%  Similarity=0.345  Sum_probs=82.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.++.+.|.+++.+.+||+|+++++  ++.+|+.+....                    ........++.++|.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~--------------------~~~~~~~~~~~~~~~~-   66 (112)
T cd04802           8 PDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVS--------------------RNLKPREVPVGEVMST-   66 (112)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhh--------------------ccCCcccCCHHHhcCC-
Confidence            34578999999999999999999966878  999998732100                    0011234578899988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.+++++.++++.|.+++.+.+||+|++ +++|+|+.+|+++
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          67 -PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             -CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence             88999999999999999999999999999864 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.29  E-value=1.6e-11  Score=83.61  Aligned_cols=110  Identities=25%  Similarity=0.259  Sum_probs=84.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|.+.|.+.+++.+||+| +++++  ++..++.+..........           ... .......++.++|.+
T Consensus         8 ~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------~~~-~~~~~~~~v~~~~~~   75 (121)
T cd04584           8 PTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------EHE-LYLLLKMPVKEIMTK   75 (121)
T ss_pred             CCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------hhh-hhhhcCcCHHHHhhC
Confidence            346889999999999999999999 78988  999997732110000000           000 001234578899988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++.++.+++++.++++.|.+++...+||+++ |+++|+++.+|+++
T Consensus        76 --~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          76 --DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             --CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence              8899999999999999999999999999986 89999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.28  E-value=2.8e-11  Score=101.28  Aligned_cols=110  Identities=12%  Similarity=0.048  Sum_probs=91.3

Q ss_pred             ccccccccC-CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCccccccccccc--C
Q 029781           74 TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYF--G  147 (188)
Q Consensus        74 ~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~--~  147 (188)
                      +++++|... .++.++.+++++.++++.|.+++.+.+||+|+   +|+++|+||..|+....  .....++.++|.+  .
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~~~~~~V~dIMt~~~~  172 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--MSLDTKVKDFMTPFEK  172 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--cCCCCCHHHHhCCCCC
Confidence            467777521 14579999999999999999999999999996   58999999999997432  2344568889985  4


Q ss_pred             cc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          148 FN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       148 ~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +. +.++.++.+++++|.++++..+||++ ++.+.|+||.
T Consensus       173 ~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~  212 (502)
T PRK07107        173 LVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFR  212 (502)
T ss_pred             eEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEh
Confidence            44 89999999999999999999999998 4899999985

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.27  E-value=1.2e-10  Score=78.77  Aligned_cols=105  Identities=26%  Similarity=0.266  Sum_probs=90.2

Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc-ccccccccCcc-cCCcch
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR-KLGFNLYFGFN-SGNAYF  155 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~  155 (188)
                      +|.+  ++.++.++.++.++...|.++++..+||++. ++++|++|.+|+.++........ ++.++|..... +.++.+
T Consensus         4 ~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~   80 (117)
T COG0517           4 IMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDTP   80 (117)
T ss_pred             cccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECCCCC
Confidence            3445  8899999999999999999999999999984 48999999999999887655444 46777875444 889999


Q ss_pred             HHHHHHHHhc-cCceEEEEEeCC--Eeeceeec
Q 029781          156 ARWLLKFVGG-INCGFLLTVEGA--MTANIISS  185 (188)
Q Consensus       156 ~~~v~~~l~~-~~~~~~~vv~~~--~~~giit~  185 (188)
                      ..++.+.|.+ ++...+||++++  .+.|++|.
T Consensus        81 ~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~  113 (117)
T COG0517          81 LEEALELMVERHKIRRLPVVDDDGGKLVGIITL  113 (117)
T ss_pred             HHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEH
Confidence            9999999999 799999999875  89999986

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=6.6e-11  Score=83.47  Aligned_cols=101  Identities=23%  Similarity=0.195  Sum_probs=83.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC----------------------------
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG----------------------------  135 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~----------------------------  135 (188)
                      ++.++++++++.++.+.|.+.+++.+||+|+ |+++|+++..|+++.+....                            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            6788999999999999999999999999997 99999999999987654222                            


Q ss_pred             ------cccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          136 ------SMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       136 ------~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                            ...++.++|.+... +.+++...++.+.|.+.+...+||++++...|+++.
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~  137 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTR  137 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence                  11234455655555 888899999999999999988899988999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.27  E-value=1.3e-11  Score=105.63  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=86.2

Q ss_pred             ccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            7 PSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      +++.++.+.|.+++.+.+||+| +++++  ++.+|+.+...                     ......+.++.|+|.+  
T Consensus       464 ~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~---------------------~~~~~~~~~v~dim~~--  520 (574)
T PRK01862        464 ASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLL---------------------DKRDTTDKTAADYAHT--  520 (574)
T ss_pred             CCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhh---------------------cccccccchHHHhccC--
Confidence            4789999999999999999999 78888  99999873110                     0112224578999998  


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC--CcEEEEEehHHHhhchh
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLALDS  132 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~--~~~~Giit~~dl~~~~~  132 (188)
                      ++.++++++++.++++.|.+++.+.+||+|++  ++++|+||++|+++...
T Consensus       521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            88999999999999999999999999999876  47999999999998753

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.27  E-value=5e-11  Score=99.37  Aligned_cols=112  Identities=21%  Similarity=0.171  Sum_probs=93.3

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccC
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFG  147 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~  147 (188)
                      ....+++++|.+  ++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+++.+....  ...++.++|.+.
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~  409 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSKK  409 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCC
Confidence            456789999998  8999999999999999999999999999998889999999999997554322  234577788776


Q ss_pred             cc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          148 FN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       148 ~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +. +.+++++.++.++|.+++  ..+|++++.+.|+||.
T Consensus       410 ~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~  446 (454)
T TIGR01137       410 FIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTK  446 (454)
T ss_pred             CeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEH
Confidence            65 899999999999998754  4566678999999985

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=8e-11  Score=79.53  Aligned_cols=101  Identities=13%  Similarity=0.149  Sum_probs=80.4

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcC-CCeEEEEcCCCcEEEEEehHHHhhchhccCc--ccccccccccCcc-cCCc--chHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGS--MRKLGFNLYFGFN-SGNA--YFAR  157 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~-~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~~~~~-~~~~--~~~~  157 (188)
                      ++.++.++.++.++++.|.+++ ...+||+| +|+++|+++..|+++.......  ..++.++|..... +.++  +.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            5678999999999999998888 66777777 5899999999999976543222  2345667765555 6655  6788


Q ss_pred             HHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          158 WLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       158 ~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ++++.|.+++...+||+++ +.+.|++|.
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~  109 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTA  109 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEh
Confidence            9999999999999999975 889999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=2.7e-11  Score=80.75  Aligned_cols=94  Identities=28%  Similarity=0.310  Sum_probs=79.4

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.++.+.|.+.+++.+||++ +++++  ++.+++...                           ....++.++|.. 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~---------------------------~~~~~~~~~~~~-   60 (106)
T cd04638           9 PGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN---------------------------PEEEQLALLMTR-   60 (106)
T ss_pred             CCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc---------------------------cccchHHHHhcC-
Confidence            45888999999998999999999 68888  898887621                           112356788887 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                       ++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus        61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          61 -DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             -CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             8889999999999999999999999999984 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.26  E-value=1.1e-11  Score=102.05  Aligned_cols=104  Identities=25%  Similarity=0.256  Sum_probs=90.8

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      ...++.+|++.|.+.|.+++.+++ ++.+.  +|++|+.++..                     ........+|+++|+.
T Consensus       164 ~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~---------------------~~g~~~~~~V~evmT~  222 (610)
T COG2905         164 PQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVI---------------------ADGRSKTQKVSEVMTS  222 (610)
T ss_pred             ccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHH---------------------hcCCCcccchhhhhcc
Confidence            356889999999999999999998 88888  99999885321                     1245567899999999


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        +++++..++.+.+|+-.|.+++++++||++ +|+++|++|..||+++..
T Consensus       223 --p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         223 --PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             --CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence              999999999999999999999999999997 699999999999998664

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=2.6e-11  Score=80.74  Aligned_cols=102  Identities=31%  Similarity=0.399  Sum_probs=82.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-.++.++.+.|.+++...+||++ +++++  ++.+++.+....                     ........+.++|..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~---------------------~~~~~~~~~~~~~~~   66 (113)
T cd02205           8 PDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE---------------------GGLDPLVTVGDVMTR   66 (113)
T ss_pred             CCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh---------------------ccCCccccHHHHhcC
Confidence            456899999999999999999999 68888  898998742110                     011111126778887


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          67 --DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             --CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence              8899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.26  E-value=2.9e-11  Score=94.57  Aligned_cols=114  Identities=22%  Similarity=0.209  Sum_probs=100.0

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCc
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGF  148 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  148 (188)
                      ..+-..|+|+|.|.++..++.+++++++-.++..+.+.+++||+|+..+++|++|.+|+....    ...+++-.|...+
T Consensus       184 KkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----~~t~ieKVMtknp  259 (432)
T COG4109         184 KKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----PSTTIEKVMTKNP  259 (432)
T ss_pred             hhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----CCccHHHHhccCC
Confidence            344578999999877889999999999999999999999999999999999999999998654    3455677888755


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeecc
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISSF  186 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~~  186 (188)
                      . +.+.++...+.++|--.++..+||+++ ..+.|+||++
T Consensus       260 ~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~  299 (432)
T COG4109         260 ITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQ  299 (432)
T ss_pred             eeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHH
Confidence            5 999999999999999999999999985 6899999974

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=6.6e-11  Score=80.78  Aligned_cols=101  Identities=20%  Similarity=0.094  Sum_probs=82.8

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC------------cccccccccccCcc-c
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG------------SMRKLGFNLYFGFN-S  150 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~------------~~~~~~~~~~~~~~-~  150 (188)
                      ++.++.++.++.++.+.|.+++++.+||+|+ |+++|+++..++++.+....            ....+.++|...+. +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            5778999999999999999999999999996 89999999999987543210            11235566665555 8


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .+++...++++.|.+++...+||+++ +.+.|++|.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~  116 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITW  116 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEH
Confidence            88999999999999999998899975 899999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.25  E-value=8.7e-11  Score=78.53  Aligned_cols=99  Identities=27%  Similarity=0.253  Sum_probs=81.6

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCC-cchHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGN-AYFARWLLK  161 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~v~~  161 (188)
                      ++..+..+.++.++.+.|.+++.+.+||+|++|+++|+++.++++....   ...++.++|..... +.+ ++++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~l~~~~~   79 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---LDKPVSEVMTPENLLTTVEGTSLEEALE   79 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence            6788999999999999999999999999998899999999999975432   22345667754333 555 899999999


Q ss_pred             HHhccCceEEEEEe-CCEeeceeec
Q 029781          162 FVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       162 ~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .|.+.+...+||++ ++.+.|++|.
T Consensus        80 ~~~~~~~~~~~Vv~~~~~~~Gvi~~  104 (110)
T cd04601          80 LLHEHKIEKLPVVDDEGKLKGLITV  104 (110)
T ss_pred             HHHHhCCCeeeEEcCCCCEEEEEEh
Confidence            99999999889997 4889999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.25  E-value=6.9e-11  Score=82.57  Aligned_cols=94  Identities=19%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc-c------------ccccc------
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR-K------------LGFNL------  144 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~-~------------~~~~~------  144 (188)
                      ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++++....+... .            +.+++      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~   81 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY   81 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence            6789999999999999999999999999998899999999999998665333211 0            12233      


Q ss_pred             ---ccCcc-cCCcchHHHHHHHHhccCceEEEEEeCC
Q 029781          145 ---YFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGA  177 (188)
Q Consensus       145 ---~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~  177 (188)
                         ...+. +.+++.+.++++.|.+++...+||++++
T Consensus        82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence               23344 9999999999999999999999999754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.24  E-value=3.7e-11  Score=81.22  Aligned_cols=100  Identities=31%  Similarity=0.386  Sum_probs=83.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.+|...|.++++..+||++.++++  +|.+|+.+....                      ......++.++|.. 
T Consensus        14 ~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~----------------------~~~~~~~v~~v~~~-   70 (117)
T COG0517          14 PDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAA----------------------GGKRLLPVKEVMTK-   70 (117)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhc----------------------cCCccccHHHhccC-
Confidence            45688999999999999999999876777  999999843210                      11111168999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHh-cCCCeEEEEcCCC-cEEEEEehHHHh
Q 029781           83 EDLHAVKTTTTVDEALERLVE-KRITGFPVIDDDW-KLVGVVSDYDLL  128 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~-~~~~~~pVvd~~~-~~~Giit~~dl~  128 (188)
                       ++.++.++.++.++.+.|.+ ++.+.+||+++++ +++|++|..|++
T Consensus        71 -~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          71 -PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             -CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence             89999999999999999999 7999999999875 999999999974

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.24  E-value=1.5e-10  Score=77.36  Aligned_cols=99  Identities=22%  Similarity=0.241  Sum_probs=78.3

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc--ccccccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS--MRKLGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++.++.+++++.++.+.|.+++.+.+||+|+ |+++|+++..|+.+.......  ...+.+++.+... +.+++.+.++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            5678999999999999999999999999997 999999999999986543322  2345666765555 88888888999


Q ss_pred             HHHhccCceEEEEEe-CCEeeceeec
Q 029781          161 KFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       161 ~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      ++|.+ ... +||++ ++.+.|++|.
T Consensus        81 ~~~~~-~~~-~~vv~~~~~~~Gvvt~  104 (110)
T cd04609          81 ELLDR-GNV-AVVVDEGGKFVGIITR  104 (110)
T ss_pred             HHHHh-CCc-eeEEecCCeEEEEEeH
Confidence            98887 444 45554 5899999985

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=3.9e-11  Score=84.63  Aligned_cols=121  Identities=23%  Similarity=0.280  Sum_probs=84.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCccccccccccc------chhhhhhhccCCCCCCCC------CCCC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTV------SREVKAFAHNGVGITNSV------PPRN   70 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~------~~~~~~~~~~~~~~~~~~------~~~~   70 (188)
                      +-.++.++++.|.+++++.+||+|+++++  ++.+|+.+.......      ++....+.... ......      ....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   86 (143)
T cd04634           8 ADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPL-REFINWEETKRALTDA   86 (143)
T ss_pred             CCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccc-hheeehHHHHHHHHHH
Confidence            45689999999999999999999988888  999998742210000      00000000000 000000      0001


Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      ...++.++|..  ++.++.+++++.+++..|.+++.+.+||+++ |+++|+++.+|++.
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            24568889988  8999999999999999999999999999987 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.23  E-value=1.1e-11  Score=91.94  Aligned_cols=115  Identities=18%  Similarity=0.231  Sum_probs=102.9

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN  149 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (188)
                      .++.++|+|.|+....+++.+.++.+.+..+.+..++++||+.+ .+.+.|++..+||++++........+.+++.|.+.
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRPav~  144 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRPAVV  144 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhccccee
Confidence            46789999999888899999999999999999999999999965 35799999999999987665555567888999999


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ++....+...++-+..+..+.+.|+|+ |...|+||.
T Consensus       145 VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTI  181 (293)
T COG4535         145 VPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTI  181 (293)
T ss_pred             cccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEH
Confidence            999999999999999999999999987 899999984

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.23  E-value=1e-10  Score=97.24  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=92.9

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEehHHHhhchhccCcccccccccc--cC
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGSMRKLGFNLY--FG  147 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~---~~~~Giit~~dl~~~~~~~~~~~~~~~~~~--~~  147 (188)
                      .+.++.|.+  ++.++.++.++.++++.|.+++++++||+|++   ++++|+||.+|++....   ...++.++|.  +.
T Consensus        80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---~~~~V~dvm~~~~~  154 (450)
T TIGR01302        80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---KGKPVSEVMTREEV  154 (450)
T ss_pred             ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---CCCCHHHhhCCCCC
Confidence            456778888  89999999999999999999999999999987   69999999999975432   3445788887  44


Q ss_pred             cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ..+.++.++.++++.|.+++.+.+||+++ +.+.|+||.
T Consensus       155 ~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~  193 (450)
T TIGR01302       155 ITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITM  193 (450)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEh
Confidence            44999999999999999999999999975 899999985

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=2.1e-10  Score=77.05  Aligned_cols=101  Identities=20%  Similarity=0.213  Sum_probs=82.4

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh-chhccC-cc-cccccccccCcc-cCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA-LDSISG-SM-RKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~-~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      ++.++.+++++.++.+.|.+++.+.+||+|+ |+++|+++..+++. ...... .. .++.++|..... +.+++.+.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA   80 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence            5788999999999999999999999999997 99999999999873 222111 12 236677765555 8999999999


Q ss_pred             HHHHhccCceEEEEEeC-CEeeceeec
Q 029781          160 LKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .+.|...+...+||+++ +.+.|++|.
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~it~  107 (113)
T cd04622          81 ARLMREHQVRRLPVVDDDGRLVGIVSL  107 (113)
T ss_pred             HHHHHHcCCCeeeEECCCCcEEEEEEH
Confidence            99999999988899975 899999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.22  E-value=1.3e-10  Score=78.51  Aligned_cols=99  Identities=21%  Similarity=0.179  Sum_probs=81.0

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccCcc-cC--CcchHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SG--NAYFAR  157 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~  157 (188)
                      ++.++.+++++.++++.|.+++.+.+||+|+   +|+++|+++..|++....   ....+.++|.+... +.  +++.+.
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~---~~~~v~~~~~~~~~~~~~~~~~~l~   79 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD---SETPLSEVMTPREVLVVAPTGITLE   79 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc---cCCCHHHhcCCCceEEECCCCCCHH
Confidence            5678899999999999999889899999996   689999999999975332   12336677765443 54  488899


Q ss_pred             HHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          158 WLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       158 ~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      ++++.|.+++...+||++ ++.+.|++|.
T Consensus        80 ~~l~~~~~~~~~~~pVv~~~~~~~Gvit~  108 (114)
T cd04602          80 EANEILRESKKGKLPIVNDDGELVALVTR  108 (114)
T ss_pred             HHHHHHHhcCCCceeEECCCCeEEEEEEH
Confidence            999999999999999997 5899999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=2.7e-10  Score=75.74  Aligned_cols=102  Identities=26%  Similarity=0.291  Sum_probs=83.4

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc--cccccccCcc-cCCcchHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK--LGFNLYFGFN-SGNAYFARWLL  160 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~v~  160 (188)
                      ++.+++.+.++.++.+.|.+++...+||++++++++|+++..++++..........  +.+.+..... +.++..+.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAA   81 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHHH
Confidence            56788999999999999999999999999988999999999999976643322111  3345554444 88899999999


Q ss_pred             HHHhccCceEEEEEeC-CEeeceeec
Q 029781          161 KFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       161 ~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +.|.+.+...++|+++ +...|+++.
T Consensus        82 ~~~~~~~~~~~~V~~~~~~~~G~i~~  107 (113)
T cd02205          82 ELMLEHGIRRLPVVDDEGRLVGIVTR  107 (113)
T ss_pred             HHHHHcCCCEEEEEcCCCcEEEEEEH
Confidence            9999998999999976 899999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.22  E-value=4.1e-11  Score=93.21  Aligned_cols=94  Identities=27%  Similarity=0.202  Sum_probs=80.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -+++.++++.|.+.+++.+||+| +|+++  ++.+|+.+...                      .......++.++|.+ 
T Consensus       172 ~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~----------------------~~~~~~~~v~~im~~-  228 (268)
T TIGR00393       172 TTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL----------------------GGGSLKSEVRDFMTL-  228 (268)
T ss_pred             CCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh----------------------cCCcccCcHHHhCCC-
Confidence            45789999999999999999999 88999  99999873210                      012234679999988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEe
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS  123 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit  123 (188)
                       ++.++.+++++.++++.|.+++...+||+|++|+++|+|+
T Consensus       229 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       229 -GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             -CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence             8899999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.21  E-value=4.3e-11  Score=80.02  Aligned_cols=91  Identities=21%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      .-.++.++.+.|.+.++..+||+++    |+++  ++.+++.+..                        .   .     +
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~------------------------~---~-----~   56 (105)
T cd04591           9 EGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL------------------------K---N-----Y   56 (105)
T ss_pred             ccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH------------------------H---H-----h
Confidence            3467889999999999999999985    6788  9998876210                        0   0     7


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                      |.+  ++.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++++
T Consensus        57 m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          57 IDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA  105 (105)
T ss_pred             ccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence            887  888999999999999999999999999996 6899999999999753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=4.1e-10  Score=74.98  Aligned_cols=98  Identities=21%  Similarity=0.228  Sum_probs=81.2

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      +..++..+.++.+++..|.+.+.+.+||++++++++|+++..+++....    ...+.++|..... +.+++...++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----EEQLALLMTRDPPTVSPDDDVKEAAKL   77 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----cchHHHHhcCCCceECCCCCHHHHHHH
Confidence            4678889999999999999989999999998899999999999985421    1224455554444 7888999999999


Q ss_pred             HhccCceEEEEEeCCEeeceeec
Q 029781          163 VGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      |.+.+...+||++++.+.|++|.
T Consensus        78 ~~~~~~~~~~Vvd~~~~~G~it~  100 (106)
T cd04638          78 MVENNIRRVPVVDDGKLVGIVTV  100 (106)
T ss_pred             HHHcCCCEEEEEECCEEEEEEEH
Confidence            99999999999998899999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.20  E-value=1.8e-10  Score=77.20  Aligned_cols=94  Identities=26%  Similarity=0.176  Sum_probs=77.4

Q ss_pred             EcCCCCHHHHHHHHHhcC-----CCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHH
Q 029781           88 VKTTTTVDEALERLVEKR-----ITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLK  161 (188)
Q Consensus        88 v~~~~~l~~~~~~m~~~~-----~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~  161 (188)
                      +.+++++.++++.|.+++     ...+||+|++|+++|+++.+++++..    ....+.+++.+... +.+++...++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~~i~~~~~~~~~~~   77 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD----PDTPVSDIMDTDVISVSADDDQEEVAR   77 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC----CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence            567889999999998777     46899999889999999999998632    22346667766555 888999999999


Q ss_pred             HHhccCceEEEEEe-CCEeeceeec
Q 029781          162 FVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       162 ~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .|..++...+||++ ++...|++|.
T Consensus        78 ~~~~~~~~~~~Vv~~~~~~~Gvit~  102 (109)
T cd04606          78 LFEKYDLLALPVVDEEGRLVGIITV  102 (109)
T ss_pred             HHHHcCCceeeeECCCCcEEEEEEh
Confidence            99999998889997 5889999985

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.20  E-value=4.1e-11  Score=94.25  Aligned_cols=101  Identities=15%  Similarity=0.114  Sum_probs=83.5

Q ss_pred             cccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -.++.++.+.+.+++++++||++ + ++++  ++.+|++...                       ........+.++|.+
T Consensus        85 ~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~-----------------------~~~~~~~~l~~l~r~  141 (292)
T PRK15094         85 NQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM-----------------------RSDAEAFSMDKVLRQ  141 (292)
T ss_pred             CCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh-----------------------hccCCcCCHHHHcCC
Confidence            46788999999999999999998 4 6788  9999987211                       001112357889976


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                         +.++++++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+.
T Consensus       142 ---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~iv  189 (292)
T PRK15094        142 ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  189 (292)
T ss_pred             ---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHh
Confidence               558999999999999999999999999999899999999999998654

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.20  E-value=3.4e-10  Score=75.28  Aligned_cols=97  Identities=24%  Similarity=0.245  Sum_probs=81.0

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ++.+++.+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++...    ....+.++|.+... +.+++.+.++++.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----~~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----PDETVEEIMSKDLVVAVPEMDIMDAARV   77 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence            6788999999999999999888889999996 9999999999998642    12345667765555 8899999999999


Q ss_pred             HhccCceEEEEEe-CCEeeceeec
Q 029781          163 VGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      |.+++...+||++ ++.+.|+++.
T Consensus        78 ~~~~~~~~~~Vv~~~g~~~Gvi~~  101 (107)
T cd04610          78 MFRTGISKLPVVDENNNLVGIITN  101 (107)
T ss_pred             HHHhCCCeEeEECCCCeEEEEEEH
Confidence            9998988889987 4789999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.19  E-value=1.8e-10  Score=96.62  Aligned_cols=103  Identities=14%  Similarity=0.057  Sum_probs=89.0

Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccC--cc-cC
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFG--FN-SG  151 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~--~~-~~  151 (188)
                      .|.+  ++.++.+++++.++++.|.+++++.+||+|+   +|+++|+||.+|+....   +...++.++|.+.  .. +.
T Consensus       105 gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---~~~~~V~eIMt~~~~lvtv~  179 (505)
T PLN02274        105 GFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---DRETKLSEVMTSDDDLVTAP  179 (505)
T ss_pred             cccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---ccCCcHHHHhccCCCcEEEC
Confidence            3667  8999999999999999999999999999986   37999999999997543   3345678888754  44 89


Q ss_pred             CcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          152 NAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       152 ~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +++.+.+++++|.+++...+||++ ++.+.|+||.
T Consensus       180 ~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr  214 (505)
T PLN02274        180 AGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTR  214 (505)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence            999999999999999999999997 6899999985

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.19  E-value=2e-10  Score=95.64  Aligned_cols=107  Identities=17%  Similarity=0.154  Sum_probs=92.8

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-c
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-S  150 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~  150 (188)
                      ..++.++|.+  ++.++.+++++.++++.|.+++.+.+||+|+ ++++|+||.+|+....    ...++.++|.+.+. +
T Consensus        87 ~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~~----~~~~V~dIMt~~litv  159 (475)
T TIGR01303        87 FVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGVD----RFTQVRDIMSTDLVTA  159 (475)
T ss_pred             hcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcCC----CCCCHHHHccCCceEe
Confidence            5667788988  8999999999999999999999999999984 7999999999986432    22457888887766 9


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+++++.+++++|.+++...+||++ ++.+.|+||.
T Consensus       160 ~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~  195 (475)
T TIGR01303       160 PADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTR  195 (475)
T ss_pred             CCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence            9999999999999999999999997 6899999985

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.19  E-value=1.9e-10  Score=96.57  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=92.6

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccc--cCccc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLY--FGFNS  150 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~--~~~~~  150 (188)
                      ..++++|.+  ++.++.++.++.++++.|.+++++.+||+|++++++|+||.+|+.....   ...++.++|.  +.+.+
T Consensus        87 k~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---~~~~V~dim~~~~~v~v  161 (486)
T PRK05567         87 KRSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---LSQPVSEVMTKERLVTV  161 (486)
T ss_pred             hhhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---CCCcHHHHcCCCCCEEE
Confidence            356788988  9999999999999999999999999999998899999999999975432   2345677885  34449


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .++.++.++++.|.+++...+||++ ++.+.|++|.
T Consensus       162 ~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~  197 (486)
T PRK05567        162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITV  197 (486)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEh
Confidence            9999999999999999999999997 5899999974

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.17  E-value=3e-10  Score=95.24  Aligned_cols=107  Identities=15%  Similarity=0.092  Sum_probs=90.7

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEehHHHhhchhccCccccccccccc--Cc
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGSMRKLGFNLYF--GF  148 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~---~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~--~~  148 (188)
                      ..++.|..  ++.++.+++++.++++.|.+++++.+||+|++   ++++|++|.+|+....   ....++.++|.+  .+
T Consensus        97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---~~~~~V~diMt~~~~l  171 (495)
T PTZ00314         97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---DKSTPVSEVMTPREKL  171 (495)
T ss_pred             cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---cCCCCHHHhhCCcCCc
Confidence            45567777  88999999999999999999999999999863   7999999999997432   234457888875  44


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      . +.++..+.++.++|.+++...+||++ ++.+.|+||.
T Consensus       172 vtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~  210 (495)
T PTZ00314        172 VVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSR  210 (495)
T ss_pred             eEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEe
Confidence            4 88999999999999999999999997 4789999985

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.16  E-value=4.6e-10  Score=76.16  Aligned_cols=101  Identities=18%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcC-CCeEEEEcCCCcEEEEEehHHHhhchhcc-----CcccccccccccCcc-cCCcchH
Q 029781           84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSIS-----GSMRKLGFNLYFGFN-SGNAYFA  156 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~-~~~~pVvd~~~~~~Giit~~dl~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~  156 (188)
                      ++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..+++++....     .....+.++|.+... +.++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            5678899999999999998876 889999998 9999999999998654321     122346777876665 8889999


Q ss_pred             HHHHHHHhccCce----EEEEEeCCEeeceeec
Q 029781          157 RWLLKFVGGINCG----FLLTVEGAMTANIISS  185 (188)
Q Consensus       157 ~~v~~~l~~~~~~----~~~vv~~~~~~giit~  185 (188)
                      .++++.|.+++.+    ..++.+++...|++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~  113 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTV  113 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEH
Confidence            9999999887753    2344467899999984

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.14  E-value=1.1e-10  Score=79.22  Aligned_cols=105  Identities=13%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             ccccHHHHHHHHhcCc-ccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGV-INSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~-~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+++.++++.|.+.+ ++.+||+|+|+++  ++.+++......   .     +          ........++.++|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~---~-----~----------~~~~~~~~~v~~~~~~   69 (119)
T cd04598           8 PDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLST---P-----Y----------GRALYGKKPVSEVMDP   69 (119)
T ss_pred             CCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhc---h-----h----------hHHHHcCCcHHHhcCC
Confidence            4567899999998877 8899999888888  998887631100   0     0          0001124578999988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCC---eEEEEcCCCcEEEEEehHHHhh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRIT---GFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~---~~pVvd~~~~~~Giit~~dl~~  129 (188)
                        ++..+.+++++.++++.|.+++..   ..||++++|+++|+||..|+++
T Consensus        70 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          70 --DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             --CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence              899999999999999999988753   4468887899999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.14  E-value=1.3e-10  Score=95.39  Aligned_cols=131  Identities=11%  Similarity=0.004  Sum_probs=97.9

Q ss_pred             cccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -+++.++.+.+.+++++++||++  .++++  ++.+|++...                        . ....++.++|++
T Consensus       209 ~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~------------------------~-~~~~~l~~~~~~  263 (408)
T TIGR03520       209 ETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHL------------------------N-KKNFDWQSLLRE  263 (408)
T ss_pred             CCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHh------------------------c-cCCCCHHHHcCC
Confidence            36789999999999999999998  35788  9999987211                        0 123457888864


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh-ccCcc-cccccccc---cCcc-cCCcch
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS-ISGSM-RKLGFNLY---FGFN-SGNAYF  155 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~-~~~~~-~~~~~~~~---~~~~-~~~~~~  155 (188)
                         +.++++++++.++++.|++++.+..+|+|+.|..+|+||..|+++.+. +.... ...++.+.   +..+ ++...+
T Consensus       264 ---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~  340 (408)
T TIGR03520       264 ---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTS  340 (408)
T ss_pred             ---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccC
Confidence               789999999999999999999999999999899999999999998663 21111 11111121   2223 666788


Q ss_pred             HHHHHHHHh
Q 029781          156 ARWLLKFVG  164 (188)
Q Consensus       156 ~~~v~~~l~  164 (188)
                      +.++.+.+.
T Consensus       341 l~~l~~~l~  349 (408)
T TIGR03520       341 LKDFYKILK  349 (408)
T ss_pred             HHHHHHHhC
Confidence            888877765

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.08  E-value=1e-10  Score=99.69  Aligned_cols=112  Identities=23%  Similarity=0.283  Sum_probs=83.9

Q ss_pred             Ccccccccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc--------------Cc
Q 029781           72 TYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS--------------GS  136 (188)
Q Consensus        72 ~~~v~~im~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--------------~~  136 (188)
                      ..+++++|+ +  ++.++++++++.++.+.|.+++.+.+||+|++|+++|++|.+|+++.....              +.
T Consensus       245 ~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~  322 (546)
T PRK14869        245 SIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGI  322 (546)
T ss_pred             CCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccch
Confidence            567889999 7  899999999999999999999999999999999999999999999744310              00


Q ss_pred             ----------ccccccccccCcc----cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          137 ----------MRKLGFNLYFGFN----SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       137 ----------~~~~~~~~~~~~~----~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                                ..+.++++...++    .+.......+.+++.+.++...+++....+.||++.
T Consensus       323 ~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~ll~gIlsD  385 (546)
T PRK14869        323 EEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGLLLAAILSD  385 (546)
T ss_pred             hhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence                      0012233332211    233556667888888888888887777778888764

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.07  E-value=4.7e-10  Score=88.60  Aligned_cols=116  Identities=17%  Similarity=0.159  Sum_probs=99.4

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccc--cccccc
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRK--LGFNLY  145 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~--~~~~~~  145 (188)
                      +...++|.|+|.++.+...+..+++.+++++.+.+..+.++|+..++ +.++|+++.+|+++++.+......  +.....
T Consensus       196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~  275 (423)
T COG4536         196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAAD  275 (423)
T ss_pred             ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhc
Confidence            45678999999999899999999999999999999999999999543 569999999999999877664222  233346


Q ss_pred             cCcccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781          146 FGFNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS  184 (188)
Q Consensus       146 ~~~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit  184 (188)
                      ++.+++..+++.+-+..+.+++.++..|||| |.+.|+||
T Consensus       276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVT  315 (423)
T COG4536         276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVT  315 (423)
T ss_pred             CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeee
Confidence            7777999999999999999999999999987 89999987

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.04  E-value=1.7e-09  Score=87.87  Aligned_cols=167  Identities=20%  Similarity=0.196  Sum_probs=120.4

Q ss_pred             cccccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      ..-.++.++...+.++++.++||.|  .+++.  +|.+.+++....+......               ......++.|.-
T Consensus       168 ~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~---------------~~~l~~s~~dl~  232 (381)
T KOG1764|consen  168 SPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPL---------------PSLLSKSLSDLG  232 (381)
T ss_pred             cCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccccc---------------HHHhhCCHHHhC
Confidence            3456788899999999999999998  56666  8888888533221111110               011122222221


Q ss_pred             ccC-CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc----cccc------cccC-
Q 029781           80 TKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK----LGFN------LYFG-  147 (188)
Q Consensus        80 ~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~----~~~~------~~~~-  147 (188)
                      ... .+...+..++++.+|++.|.+.+++.+||+|.+|..+|.++..|+............    +...      -... 
T Consensus       233 ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~v  312 (381)
T KOG1764|consen  233 IGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGV  312 (381)
T ss_pred             cchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCcc
Confidence            110 157899999999999999999999999999999999999999999976654432211    1111      1223 


Q ss_pred             cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +.+.+..++..++..|..++.+.+.|+++ +.+.|+||-
T Consensus       313 vtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSL  351 (381)
T KOG1764|consen  313 VTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISL  351 (381)
T ss_pred             EEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeH
Confidence            33888999999999999999999999997 889999984

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.98  E-value=2.5e-09  Score=88.15  Aligned_cols=110  Identities=25%  Similarity=0.201  Sum_probs=95.7

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhc-----CCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccc
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFN  143 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~  143 (188)
                      ....-+++.+|+.  ++++++++.++.+++..+++.     ....+.|+|+++++.|+++.++++...    ....+.++
T Consensus       128 ~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~----~~~~i~~i  201 (451)
T COG2239         128 SYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE----PDELLKDL  201 (451)
T ss_pred             CCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC----cHhHHHHH
Confidence            3456689999999  999999999999999999954     456799999999999999999998654    34457888


Q ss_pred             cccCcc-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781          144 LYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS  184 (188)
Q Consensus       144 ~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit  184 (188)
                      |.+.+. +.+++..+++.+.+.+++.-.+||+++ +++.|++|
T Consensus       202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~it  244 (451)
T COG2239         202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIIT  244 (451)
T ss_pred             hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeee
Confidence            887755 999999999999999999999999985 69999998

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.97  E-value=1.2e-09  Score=91.04  Aligned_cols=100  Identities=16%  Similarity=0.169  Sum_probs=79.3

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -+++.++++.|.+++++.+||+| +++++  +|.+|+.+...                     ........++.++|.+ 
T Consensus       351 ~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~---------------------~~~~~~~~~v~~im~~-  408 (454)
T TIGR01137       351 TETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF---------------------AGKANPDDAVSKVMSK-  408 (454)
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh---------------------ccCCCcCCCHHHhcCC-
Confidence            45899999999999999999999 78888  99999873110                     0011223478999988 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                       ++.++++++++.++++.|.+++   .|+++++|+++|+||.+|+++++
T Consensus       409 -~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       409 -KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             -CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence             8889999999999999998764   34454578999999999998764

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.97  E-value=4.5e-09  Score=89.65  Aligned_cols=57  Identities=30%  Similarity=0.390  Sum_probs=53.3

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                      ..+++++|.+  ++.++++++++.+|++.|.+++.+.+||+|++|+++|++|..|+.+.
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~  123 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARA  123 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence            4689999998  89999999999999999999999999999988999999999999863

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.92  E-value=5.9e-09  Score=84.70  Aligned_cols=107  Identities=21%  Similarity=0.258  Sum_probs=81.4

Q ss_pred             ccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcc-cccc----
Q 029781            7 PSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYT-VGDF----   78 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i----   78 (188)
                      +++.+|+++|.+.+++++||++ .|+.+  ++..|+......                    ......... +++.    
T Consensus       246 ~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~--------------------~~~~~~~~~~l~~~~~~~  305 (381)
T KOG1764|consen  246 TPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE--------------------GTYNNLDLSCLSEALSHR  305 (381)
T ss_pred             CcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc--------------------CccCccchhHHHHHhhhc
Confidence            3489999999999999999999 77778  888887742211                    001111111 2111    


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      +.....++++.++.++.++++.|..++++++.|+|++|.++|+||..|++.++..
T Consensus       306 ~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  306 PIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             ccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence            1122257899999999999999999999999999999999999999999987754

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.89  E-value=3.4e-09  Score=87.37  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=84.0

Q ss_pred             ccHHHHHHHHhc-----CcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            7 PSCLTLARLNAN-----GVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         7 ~sv~~a~~~m~~-----~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      -|+.+++..+.+     ..+..+.|+| ++++.  ++.++++                           ....+..++++
T Consensus       149 ~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll---------------------------~a~~~~~i~~i  201 (451)
T COG2239         149 VTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL---------------------------TAEPDELLKDL  201 (451)
T ss_pred             cCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh---------------------------cCCcHhHHHHH
Confidence            367777777773     4567899999 88899  8888887                           34456799999


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      |.+  .++++.++++.+++.+.+.+++.-.+||+|++++++|++|..|++..+.
T Consensus       202 m~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         202 MED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             hcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence            999  8999999999999999999999999999999999999999999997664

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.85  E-value=4.8e-09  Score=73.25  Aligned_cols=99  Identities=12%  Similarity=0.062  Sum_probs=68.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc--
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM--   79 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im--   79 (188)
                      .-.++.+|++.|.++++.++||+| +|+++  +|.+|+++........      . .  . ............+.++|  
T Consensus         8 ~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~------~-~--~-~~~~~~~~~~~~v~~i~~~   77 (133)
T cd04592           8 PTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTT------R-V--Q-PEDETKQTNTCLVSSVCTK   77 (133)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhcccc------c-c--c-cchhhcccccccHHHHhhh
Confidence            345889999999999999999999 78988  9999988422100000      0 0  0 00000001112233454  


Q ss_pred             -------ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC
Q 029781           80 -------TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD  115 (188)
Q Consensus        80 -------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~  115 (188)
                             ..  ++.++.+++++.+|++.|.+++.+.+||+|++
T Consensus        78 ~~~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          78 GISYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             hhhhcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence                   45  78899999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK11573 hypothetical protein; Provisional

Probab=98.78  E-value=1.7e-08  Score=83.10  Aligned_cols=102  Identities=11%  Similarity=0.024  Sum_probs=80.8

Q ss_pred             cccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -.++.++.+++.+++++++||.+  .++++  ++.+|++....                     .........+.++++ 
T Consensus       205 ~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~---------------------~~~~~~~~~l~~~~r-  262 (413)
T PRK11573        205 NDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT---------------------EKKEFTKENMLRAAD-  262 (413)
T ss_pred             CCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh---------------------ccCcCCHHHHHhhcc-
Confidence            36788999999999999999997  46777  99999873110                     000111223456665 


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                        ++..++++.++.++++.|++++.+...|+|+.|...|+||..|++..+
T Consensus       263 --~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei  310 (413)
T PRK11573        263 --EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI  310 (413)
T ss_pred             --CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence              578999999999999999999999999999999999999999999754

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.70  E-value=4.8e-08  Score=66.12  Aligned_cols=55  Identities=27%  Similarity=0.425  Sum_probs=51.4

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      .++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            679999998  8899999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.69  E-value=1.3e-07  Score=75.69  Aligned_cols=97  Identities=23%  Similarity=0.234  Sum_probs=84.1

Q ss_pred             ccHHHHHHHHhcCcccCCceee----cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            7 PSCLTLARLNANGVINSVPHLQ----LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd----~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .++.++++....+++..+||.+    .++|+  ||.+|+--                          .......+.++|+
T Consensus       125 ~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f--------------------------~~~~~~~~~~vmt  178 (503)
T KOG2550|consen  125 TTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQF--------------------------LEDNSLLVSDVMT  178 (503)
T ss_pred             ccchhhhhhcccccccccccccCCcccceeEEEEehhhhhh--------------------------hhcccchhhhhcc
Confidence            4677888888899999999996    46788  99999761                          1334678899999


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      +  +.++.+.+.++.++-+++.+++...+||+|++|+++.++++.||.+..
T Consensus       179 ~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  179 K--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             c--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            9  779999999999999999999999999999999999999999998754

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=7.5e-08  Score=78.93  Aligned_cols=98  Identities=18%  Similarity=0.132  Sum_probs=81.5

Q ss_pred             cHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCCC
Q 029781            8 SCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKED   84 (188)
Q Consensus         8 sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~   84 (188)
                      +..++++.|...+.+.++|+| ++++.  ++.+++....                        .  ....+.+.+.+  .
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------~--~~~~~~~~~~~--~  346 (400)
T PRK10070        295 GPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTAL------------------------T--QQQGLDAALID--A  346 (400)
T ss_pred             CHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhh------------------------h--cCCchhhhhcc--C
Confidence            567899999999999999999 88888  8888876211                        1  12357777777  7


Q ss_pred             eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc
Q 029781           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS  134 (188)
Q Consensus        85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~  134 (188)
                      ..++.+++++.+++..+.++... +||+|++|+++|+|+..++++.+...
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        347 PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            88999999999999999987766 99999999999999999999887543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.63  E-value=1.1e-07  Score=77.07  Aligned_cols=96  Identities=20%  Similarity=0.296  Sum_probs=79.6

Q ss_pred             cHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCCC
Q 029781            8 SCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKED   84 (188)
Q Consensus         8 sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~   84 (188)
                      +..++.+.|...+...+.|+| ++++.  ++.+++...                          ......+.+.|.+  .
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------------------~~~~~~~~~~~~~--~  311 (363)
T TIGR01186       260 GPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQA--------------------------RKKAQGLQDVLID--D  311 (363)
T ss_pred             CHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHH--------------------------hhcCCchhhhhcc--C
Confidence            567888899988998999999 78888  877776521                          1112357777877  7


Q ss_pred             eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ..++.+++++.+++..|.+++.. +||+|++|+++|+||..+++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       312 IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            88999999999999999999988 999999999999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.63  E-value=9.5e-08  Score=79.22  Aligned_cols=133  Identities=15%  Similarity=0.037  Sum_probs=92.9

Q ss_pred             cccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -+++.++.+.+.+++++++||++  .+.++  ++.+|++.....                      ... .......+. 
T Consensus       224 ~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~----------------------~~~-~~~~~~~~~-  279 (429)
T COG1253         224 TDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLD----------------------GQS-DLDLRVLVR-  279 (429)
T ss_pred             CCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhc----------------------Ccc-ccchhhccc-
Confidence            46788999999999999999998  56777  999998842100                      000 122222333 


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc----cccc---cccCcccCCcc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK----LGFN---LYFGFNSGNAY  154 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~----~~~~---~~~~~~~~~~~  154 (188)
                        ++..+++++++.++++.|++++.+...|+|+.|...|+||..|++....-...+..    ...+   ......+....
T Consensus       280 --~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~  357 (429)
T COG1253         280 --PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRV  357 (429)
T ss_pred             --CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccc
Confidence              58899999999999999999999999999999999999999999976532111110    0111   12232266667


Q ss_pred             hHHHHHHHHh
Q 029781          155 FARWLLKFVG  164 (188)
Q Consensus       155 ~~~~v~~~l~  164 (188)
                      .+.++.+.+.
T Consensus       358 ~l~e~~~~l~  367 (429)
T COG1253         358 PLEELEELLG  367 (429)
T ss_pred             cHHHHHHHhC
Confidence            7777666555

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.41  E-value=1.2e-06  Score=48.88  Aligned_cols=47  Identities=38%  Similarity=0.585  Sum_probs=42.5

Q ss_pred             eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      +.++.+++++.++++.|.+++.+.+||++++++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            56789999999999999999999999999878999999999997654

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.37  E-value=4.7e-06  Score=67.64  Aligned_cols=98  Identities=17%  Similarity=0.116  Sum_probs=80.5

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF  162 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  162 (188)
                      ......++.+..++++.|...+.+.+.|+|+++++.|.++.+++..+.....   .+.+.+.+... +++++++.+++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  327 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKAQ---GLQDVLIDDIYTVDAGTLLRETVRK  327 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcCC---chhhhhccCCceECCCCcHHHHHHH
Confidence            4445667788999999999999999999999999999999999987665322   24555555555 8999999999999


Q ss_pred             HhccCceEEEEEe-CCEeeceeec
Q 029781          163 VGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       163 l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+++.. +||++ ++.+.|+||.
T Consensus       328 ~~~~~~~-~~v~~~~~~~~g~i~~  350 (363)
T TIGR01186       328 VLKAGIK-VPVVDEDQRLVGIVTR  350 (363)
T ss_pred             HHhCCCC-EEEECCCCcEEEEEEH
Confidence            9999998 67776 7999999985

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=9e-06  Score=66.79  Aligned_cols=107  Identities=21%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             cccccccccCCCe---eEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781           73 YTVGDFMTKKEDL---HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN  149 (188)
Q Consensus        73 ~~v~~im~~~~~~---~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (188)
                      .++.++|.+  .+   ....++.+..+++..|...+.+.++|+|+++++.|+++.+++.+.....   ..+.+.+.+...
T Consensus       274 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~  348 (400)
T PRK10070        274 FSAKDIARR--TPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---QGLDAALIDAPL  348 (400)
T ss_pred             cchhhhhhc--CcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---CchhhhhccCCc
Confidence            466777754  22   2334667889999999999999999999999999999999998665422   234455555545


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                       +.+++++.+++..+...... +||++ ++.+.|+||.
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~  385 (400)
T PRK10070        349 AVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISK  385 (400)
T ss_pred             eeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEH
Confidence             89999999999999887777 67776 7999999985

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.21  E-value=3.6e-06  Score=63.08  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=83.9

Q ss_pred             cccccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      -.-.++.+.+..+.+..++++||+.  .+.+.  +.-+||+++.                       ........+.++.
T Consensus        83 ~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~-----------------------~~~~~~F~i~~lL  139 (293)
T COG4535          83 KRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFM-----------------------RSDAEPFDIKELL  139 (293)
T ss_pred             cccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHh-----------------------cCCcccccHHHhc
Confidence            3457889999999999999999997  45555  8888888532                       1222346778887


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      +|   ...++++..+...++-++..+.+...|+|+-|-+-|+||..|++...
T Consensus       140 RP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqI  188 (293)
T COG4535         140 RP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQI  188 (293)
T ss_pred             cc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHH
Confidence            64   78999999999999999999999999999999999999999999754

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.09  E-value=5.8e-06  Score=65.89  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=77.2

Q ss_pred             ccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            7 PSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +..+++++.+.+..+.++|+..  -++++  +..+|+++..            .           ... ..+-.++++-.
T Consensus       219 ~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l------------~-----------e~~-~~~k~d~~~~a  274 (423)
T COG4536         219 DPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLL------------N-----------EKN-EFTKEDILRAA  274 (423)
T ss_pred             CCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHh------------h-----------ccC-cccHhHHHHHh
Confidence            5677888999999999999996  34455  7777877421            1           111 12333444333


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      +++..+++++++.+-+..|.+++-+.-.|+|+.|.+.|+||..|++.-+
T Consensus       275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI  323 (423)
T COG4536         275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI  323 (423)
T ss_pred             cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999643

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.06  E-value=3.5e-06  Score=70.97  Aligned_cols=125  Identities=16%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceee--cC----ceE--ecCCcccc--cccccc--------cchh----hhhhhccCCCC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ--LP----ITV--ATPSHLSK--RLRFFT--------VSRE----VKAFAHNGVGI   62 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd--~~----~l~--vt~~dl~~--~~~~~~--------~~~~----~~~~~~~~~~~   62 (188)
                      -++++..+++.+..+.++++||+|  .+    ++.  +-+++++.  ..+.|.        .+..    .+.+..+....
T Consensus       597 ~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i  676 (762)
T KOG0474|consen  597 RVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSI  676 (762)
T ss_pred             chhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCch
Confidence            357788889999999999999998  22    333  55555442  011111        1111    00011111110


Q ss_pred             CCC---CCCCCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           63 TNS---VPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        63 ~~~---~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      ...   .....-...+..+|.+  .++++.+++++..+..++++-+.+++.|++..++.+|++|++|+++..
T Consensus       677 ~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  677 EDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             hhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence            000   0011223456778988  899999999999999999999999999999888999999999998654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.99  E-value=1.3e-05  Score=64.45  Aligned_cols=99  Identities=21%  Similarity=0.213  Sum_probs=82.7

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      +++.+.|+.++.++++....+++..+||.+.   ..+++|+||.+|+-..   ++....++++|.+... .+....+.++
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~---~~~~~~~~~vmt~~~~~~~~gi~l~~~  193 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL---EDNSLLVSDVMTKNPVTGAQGITLKEA  193 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh---hcccchhhhhcccccccccccccHHHH
Confidence            6788999999999999999999999999963   2579999999999655   3345567888887656 7778899999


Q ss_pred             HHHHhccCceEEEEEe-CCEeeceeec
Q 029781          160 LKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      -+++.+...+.+|+++ ++.++.++++
T Consensus       194 neiL~~~kkGkl~iv~~~gelva~~~r  220 (503)
T KOG2550|consen  194 NEILKKIKKGKLPVVDDKGELVAMLSR  220 (503)
T ss_pred             HHHHHhhhcCCcceeccCCceeeeeeh
Confidence            9999999999889997 5788888764

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.96  E-value=6e-05  Score=63.75  Aligned_cols=118  Identities=14%  Similarity=0.170  Sum_probs=85.1

Q ss_pred             ccHHHHHHHHhcCcccCCceee---cCceE--ecCCccccc------ccccccchhhhhhhccCCCCCCCCCCCCCCccc
Q 029781            7 PSCLTLARLNANGVINSVPHLQ---LPITV--ATPSHLSKR------LRFFTVSREVKAFAHNGVGITNSVPPRNGTYTV   75 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd---~~~l~--vt~~dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   75 (188)
                      .++++...+|.++.++++||+-   .+.++  +.++++...      ...+...... .+....+   ............
T Consensus       566 ~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~---~~~~~~~~~~~l  641 (696)
T KOG0475|consen  566 MTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSP---SAVAGIPSRLDL  641 (696)
T ss_pred             eeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCc---cccCCCCCCcCc
Confidence            5788999999999999999984   45566  888887731      1111111111 1111110   012233455678


Q ss_pred             ccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           76 GDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        76 ~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      +++|..  .+.++...++++.+++++++-+.+.+.|.. +|++.|+||.+|++++.
T Consensus       642 k~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  642 KDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT  694 (696)
T ss_pred             eeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence            999998  899999999999999999999999987765 79999999999999764

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.00012  Score=62.00  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=92.2

Q ss_pred             CCCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-----CcEEEEEehHHHhhchhccCcc-----
Q 029781           68 PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-----WKLVGVVSDYDLLALDSISGSM-----  137 (188)
Q Consensus        68 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-----~~~~Giit~~dl~~~~~~~~~~-----  137 (188)
                      ....+++++|+|++  ++++++.-+.+..+.+.+....++.+||+|+.     +++.|+|-++.++..++.....     
T Consensus       577 ~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  577 PYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             hHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            34467899999999  99999999999999999999999999999853     4789999999988654321100     


Q ss_pred             -----------------------------------cccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEee
Q 029781          138 -----------------------------------RKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTA  180 (188)
Q Consensus       138 -----------------------------------~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~  180 (188)
                                                         ..+..+|.|.+. +.++.++..+..++..-+.+++.|+. .....
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~  734 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV  734 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence                                               002234555555 88899999999999999999999996 57789


Q ss_pred             ceeec
Q 029781          181 NIISS  185 (188)
Q Consensus       181 giit~  185 (188)
                      |++|+
T Consensus       735 gilTR  739 (762)
T KOG0474|consen  735 GILTR  739 (762)
T ss_pred             EEEeh
Confidence            99986

>PF00571 CBS: CBS domain CBS domain web page

Probab=97.39  E-value=0.00017  Score=42.12  Aligned_cols=45  Identities=18%  Similarity=-0.064  Sum_probs=38.9

Q ss_pred             ccccccCcc-cCCcchHHHHHHHHhccCceEEEEE-eCCEeeceeec
Q 029781          141 GFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTV-EGAMTANIISS  185 (188)
Q Consensus       141 ~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv-~~~~~~giit~  185 (188)
                      +++|.+.+. +.+++++.++.+.|.+++...+||+ +++.+.|++|.
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~   48 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISR   48 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEH
Confidence            456776555 9999999999999999999999999 46899999985

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00071  Score=51.96  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=65.0

Q ss_pred             CCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC--CeeEEcCCCCHHHHH
Q 029781           23 SVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE--DLHAVKTTTTVDEAL   98 (188)
Q Consensus        23 ~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~--~~~~v~~~~~l~~~~   98 (188)
                      .+.|+++|+++  -++.+++..   +...+...+++....     ........++.+.|.+..  +--.+.......+++
T Consensus       205 ri~vm~~G~i~Q~~~P~~il~~---Pan~FV~~f~g~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (309)
T COG1125         205 RIAVMDAGEIVQYDTPDEILAN---PANDFVEDFFGESER-----GLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDAL  276 (309)
T ss_pred             eEEEecCCeEEEeCCHHHHHhC---ccHHHHHHHhccccc-----cccccchhhHHHhhcccccccCCccccchhhHHHH
Confidence            46677777777  777777642   234455555554321     112334556677776521  112344455566788


Q ss_pred             HHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781           99 ERLVEKRITGFPVIDDDWKLVGVVSDYDLLA  129 (188)
Q Consensus        99 ~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  129 (188)
                      ..+...+.+.+||+|++|+++|.+|..+++.
T Consensus       277 s~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         277 SDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             HHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            8888899999999999999999999999875

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.005  Score=52.53  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=76.0

Q ss_pred             eeEEcC-CCCHHHHHHHHHhcCCCeEEEE-c-CCCcEEEEEehHHHhhchhccCcc------------------------
Q 029781           85 LHAVKT-TTTVDEALERLVEKRITGFPVI-D-DDWKLVGVVSDYDLLALDSISGSM------------------------  137 (188)
Q Consensus        85 ~~~v~~-~~~l~~~~~~m~~~~~~~~pVv-d-~~~~~~Giit~~dl~~~~~~~~~~------------------------  137 (188)
                      ...+.. +.++++...+|.+..++.+||+ + +.++++|++.++++...+......                        
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~  637 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS  637 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence            344444 4899999999999999999987 3 346899999999998543211000                        


Q ss_pred             -cccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          138 -RKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       138 -~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                       ....++|...+. +...++.+.+.+++.+-+.....|.+++.+.|+||.
T Consensus       638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitk  687 (696)
T KOG0475|consen  638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITK  687 (696)
T ss_pred             CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeeh
Confidence             013445554444 778889999999999999999999999999999985

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.02  E-value=0.00074  Score=53.37  Aligned_cols=139  Identities=19%  Similarity=0.082  Sum_probs=93.6

Q ss_pred             CCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCCCeeEEcCCCCHHHHHHH
Q 029781           23 SVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALER  100 (188)
Q Consensus        23 ~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~  100 (188)
                      ++.++.+|+++  =|+.+|+...   +......++...         ....-.++.++|.+.+....-.+......++..
T Consensus       234 rIaimkdG~ivQ~Gtp~eIl~~P---AndYV~~Fv~~v---------~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~  301 (386)
T COG4175         234 RIAIMKDGEIVQVGTPEEILLNP---ANDYVRDFVRNV---------DRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKL  301 (386)
T ss_pred             eEEEecCCeEEEeCCHHHHHcCc---cHHHHHHHHhcC---------ChhheeeHHHhhcccccccccccccccchhhhh
Confidence            46667777877  6777777421   112222222211         223346789999852122233334445678888


Q ss_pred             HHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEe
Q 029781          101 LVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMT  179 (188)
Q Consensus       101 m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~  179 (188)
                      +.....+.+.+++..++.+|+++..++...            .+.+.+. +..++.+.+......+....++++-+++..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p~aVvde~~r~  369 (386)
T COG4175         302 LRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------ALIDDVLTVDADTPLSEILARIRQAPCPVAVVDEDGRY  369 (386)
T ss_pred             hhhccchhhHHHhccCceeeEEeccchhcc------------cccccccccCccchHHHHHHHHhcCCCceeEEcCCCcE
Confidence            988888888888877789999999998764            1233333 788899999999999888888666678999


Q ss_pred             eceeec
Q 029781          180 ANIISS  185 (188)
Q Consensus       180 ~giit~  185 (188)
                      .|+++.
T Consensus       370 vG~i~~  375 (386)
T COG4175         370 VGIISR  375 (386)
T ss_pred             EEEecH
Confidence            999875

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.26  E-value=0.016  Score=47.56  Aligned_cols=102  Identities=14%  Similarity=-0.007  Sum_probs=67.5

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN  149 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (188)
                      ..-.++.++|.+  .......+ .. .+++.   ++.+.+.|+|.     |+++..+...+..... ...+.+.......
T Consensus       271 ~~~l~a~~~m~~--~~~~~~~~-~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  337 (382)
T TIGR03415       271 LNVLTARSLMRP--LTDLEHVD-GG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-EQEVESLEAAPTV  337 (382)
T ss_pred             ccceeHHHHhcc--cccccccC-cc-hhhhh---cccceeEeecc-----ceecccchHhHhhccc-ccchhhhcccCcc
Confidence            345688999965  33333333 22 44443   78888999985     8888887665433211 1223443333344


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +++++++.+++..+.+..... +|++++.+.|+|+.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~g~~~~  372 (382)
T TIGR03415       338 INPDTLMRDVLAARHRTGGAI-LLVENGRIVGVIGD  372 (382)
T ss_pred             cCCCCcHHHHHHHHhcCCCCe-EEeeCCeEEEEEeH
Confidence            899999999999888877765 66788999999985

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.12  E-value=0.018  Score=45.76  Aligned_cols=52  Identities=27%  Similarity=0.408  Sum_probs=44.4

Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      .+.+  .+.++..++++.+.+..+.+.+. .+||+|++++++|+++...++.++.
T Consensus       332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         332 ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            4555  67889999999999998887764 5889999999999999999998764

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.90  E-value=0.019  Score=47.09  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=44.2

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      .+.+ +..  +..++++++++.+++..+.+.+. .++|+|+ |+++|+|+..+++.++.
T Consensus       327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence            3444 444  67889999999999999988775 4888885 99999999999998763

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=95.32  E-value=0.032  Score=37.32  Aligned_cols=47  Identities=17%  Similarity=0.001  Sum_probs=38.9

Q ss_pred             ccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          139 KLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       139 ~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.++|.+.+. +.+++.+.++.+.|.+++...+||++ ++.+.|+++.
T Consensus        59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~  107 (113)
T cd04597          59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITL  107 (113)
T ss_pred             hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEH
Confidence            35677766555 88899999999999999988899997 4789999984

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.15  E-value=0.11  Score=45.65  Aligned_cols=60  Identities=28%  Similarity=0.345  Sum_probs=52.1

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCC--cEEEEEehHHHhhchh
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW--KLVGVVSDYDLLALDS  132 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~--~~~Giit~~dl~~~~~  132 (188)
                      -.+.|+++|.+  ++.++..+++..|..+.+....++.+|+||+.+  -++|.|.++.+..+++
T Consensus       586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence            35789999999  999999999999999888877799999998643  4899999999987664

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=93.04  E-value=0.17  Score=27.01  Aligned_cols=36  Identities=11%  Similarity=0.015  Sum_probs=29.8

Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +.++....++.+.|.+++...++++++ +...|+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~   41 (49)
T smart00116        5 VSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTR   41 (49)
T ss_pred             ecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEH
Confidence            566778888999999888888899876 788899874

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=88.94  E-value=0.8  Score=39.05  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=73.7

Q ss_pred             CCcccccccccCCCeeEEcCCCCHH-HHHHHHHhcCCCeEEEEcCCC-cEEEEEehHHHhhchhc--cCccccccccccc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVD-EALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDSI--SGSMRKLGFNLYF  146 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~--~~~~~~~~~~~~~  146 (188)
                      ....++++|++-.++.....+..+. +......+++++++||.+.+. ..+|.+=....+.+...  .....++...+..
T Consensus       202 ~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~  281 (498)
T KOG2118|consen  202 TEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALL  281 (498)
T ss_pred             HHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhcc
Confidence            4567899999877778888888886 666677799999999997542 23333222333333321  1122234555544


Q ss_pred             Ccc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceee
Q 029781          147 GFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIIS  184 (188)
Q Consensus       147 ~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit  184 (188)
                      ... ++.........+.+...+.+.+.+.......++++
T Consensus       282 ~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~  320 (498)
T KOG2118|consen  282 RLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLT  320 (498)
T ss_pred             ccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEe
Confidence            444 88888888888888888888877776444444443

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=81.16  E-value=2.5  Score=37.70  Aligned_cols=49  Identities=16%  Similarity=-0.006  Sum_probs=43.4

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      .+.-+-+.+++.++-.++.--++++..|.+ .|+++|+|.++++.++++.
T Consensus       811 aPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~  859 (931)
T KOG0476|consen  811 APFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN  859 (931)
T ss_pred             CceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence            445677889999999999999999999998 6999999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		2e-28
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		2e-26
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		4e-22
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		2e-04

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 63/69 (91%)
Query: 70  NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           +G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 130 LDSISGSMR 138
           LDSISGS R
Sbjct: 62  LDSISGSGR 70

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 8/106 (7%)
Query: 70  NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           +G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 130 LDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVE 175
           LDS        G + +  FN+     ++   K VG +     L VE
Sbjct: 62  LDS--------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE 99

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 56/63 (88%)
Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           YTVGDF T +++LH VK +T+VD+ALE LVEK++TG PVIDD+W LVGVVSDYDLLALDS
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 133 ISG 135
           ISG
Sbjct: 64  ISG 66

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 59  GVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKL 118
           G+     +  R G   V + MTK  ++  V  +  V+EAL+ ++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREGKL-VKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 119 VGVVSDYDLLALDSISGSMR 138
           VG+++  DL+A      ++R
Sbjct: 194 VGLITMSDLVARKKYKNAVR 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-25
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-12
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	7e-19
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-11
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-18
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-09
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-18
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	7e-10
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-18
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-08
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-17
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	9e-09
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-15
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-12
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-14
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-11
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-14
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-09
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-13
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-13
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	4e-11
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	5e-13
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	9e-11
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	8e-13
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	5e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-12
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-12
1vr9_A	213	CBS domain protein/ACT domain protein; structural	3e-12
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-08
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-12
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	9e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-10
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-08
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	7e-12
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-10
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-08
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-11
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	9e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	9e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-04
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-11
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	5e-11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	9e-11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	1e-08
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-10
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	3e-04
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-10
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	4e-10
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-10
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-10
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-05
4fry_A	157	Putative signal-transduction protein with CBS DOM;	4e-10
4fry_A	157	Putative signal-transduction protein with CBS DOM;	6e-09
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-08
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-06
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	9e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-07
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-08
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	7e-08
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	2e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	5e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	4e-07
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	8e-05
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	5e-07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-04
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	3e-06
3fio_A	70	A cystathionine beta-synthase domain protein fused	1e-05
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-05
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	2e-05
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	2e-05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-05
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	4e-05
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	6e-04
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	1e-04
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	1e-04
2oux_A	286	Magnesium transporter; 10001B, structural genomics	2e-04
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	2e-04
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-04
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	2e-04
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	6e-04
3ocm_A	173	Putative membrane protein; structural genomics, PS	6e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 94.8 bits (236), Expect = 5e-25
 Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 9/114 (7%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           YTVGDFMT +++LH VK +T+VD+ALE LVEK++TG PVIDD+W LVGVVSDYDLLALDS
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 133 ISGSMRK--LGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIIS 184
           ISG  +     F              + + K  G         V   MT + + 
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYG-------KVVGDLMTPSPLV 110

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            VGD MT       V+ +T +++A   L+E +    PV+D D KL+G+++  +++
Sbjct: 99  VVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV 151

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 78.1 bits (193), Expect = 7e-19
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 19/109 (17%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V   ++       V+  T ++E ++R++E  +T    +  D KLVG++    LL +   
Sbjct: 17  DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 74

Query: 134 SGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANI 182
                      +FGF          + + +              M   +
Sbjct: 75  H----------FFGFIPKEELIRSSMKRLIA-------KNASEIMLDPV 106

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           R       + M    D   V   T ++EAL+ +++  I   PV+D+  ++VG ++  ++L
Sbjct: 92  RLIAKNASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 77.5 bits (191), Expect = 1e-18
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           TV  F+   + +  V+    +D AL  L +   +  PV+D  +KL G++S   ++
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM 66

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           R  T  V + M +  ++  ++   ++ +A+  +V        V +DD    G+ +  ++L
Sbjct: 79  RLETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVL 134

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 76.3 bits (188), Expect = 3e-18
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D M   E +  V+    ++ AL  LV+   +  PV+D  +KL G++S   +L
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMIL 70

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
             V   M +  D+  +K   +  +ALE  ++        +++D    G+++   +L
Sbjct: 87  MKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAIL 138

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 74.8 bits (184), Expect = 1e-17
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           TVG FM + + +  V+    ++ AL  L +   T  PV+D  ++L G++    ++
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM 69

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 51.3 bits (123), Expect = 9e-09
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            TV + M    D+  +     + +    ++        V +D+    G+ +   +L
Sbjct: 86  ITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVL 137

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 68.7 bits (169), Expect = 2e-15
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 74  TVGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
            +GD  +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 74  TVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +VG+ + ++    E ++       +   ++ + + R+  F V+DD  +LVGV++  D+L
Sbjct: 78  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 65.3 bits (160), Expect = 3e-14
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D MTK  ++   K    V EA E++++ +I+  PVIDD+ K++G+V+  D+ 
Sbjct: 9   KVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIG 61

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLV-----EKRITGFPVIDDDWKLVGVVSDYDLL 128
           T+GD MTK  D+  +    ++ EA++++      E+ I   PV+D + KLVG++SD D++
Sbjct: 74  TIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 62.5 bits (153), Expect = 2e-13
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D M    D+  +  T ++++ L   VE       V+ +    VG+V+ +D+L
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVL 53

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 55.6 bits (135), Expect = 1e-10
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V + M +  DL  +    T+ EA E++V+  +    V +DD +++GV+S  D+L
Sbjct: 66  KVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 117

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D MT+    H +  T T+++A   +    I   P++D + KL+G+VS  DLL
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 58

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDS 132
            + + M    D+ +V     + E+   + + +I   PV+  D  LVG+++D D +    +
Sbjct: 79  PLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIAIN 135

Query: 133 ISGSMRK 139
           +     +
Sbjct: 136 LLELQEE 142

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 62.2 bits (152), Expect = 5e-13
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
             T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++
Sbjct: 7   MTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV 61

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 56.0 bits (136), Expect = 9e-11
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           T G+       ++ V    ++ E L  + E ++   PVI +  +LVG+V++ D+ 
Sbjct: 75  TAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 126

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 61.5 bits (150), Expect = 8e-13
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            +  +MTK   L  VK +T+V EA   ++E  +    VI+DD  +VG  +  D++
Sbjct: 8   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII 60

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V   MT+  +L      T + E L ++ E RI    + ++  K+VG+ +  DLL
Sbjct: 73  PVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 124

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V   M    +   V   TTV +A++ + E  + G  V DD+   VG++S+  ++
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII 62

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 61.3 bits (149), Expect = 3e-12
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            +   M K   +  VK+   V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 76  PIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 128

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131
            V  ++T+  D   V+ + TV E L R+ + +     V D +    GVV+  DLL LD
Sbjct: 14  KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD 69

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDS 132
           +V + ++       V     +  AL   +E +    PV+D++ +L G VS +D L AL  
Sbjct: 73  SVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 130

Query: 133 ISGSMRKLG 141
                    
Sbjct: 131 ALAMDVPGI 139

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 59.4 bits (145), Expect = 4e-12
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V D ++K        +  ++ EA + L++  I   P++D+  KLVG+++ +D+ 
Sbjct: 3   VKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA 54

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 56.0 bits (136), Expect = 8e-11
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
                T+ + MT+  ++        VD    ++ +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 58  AQNKKTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            + + M +  D+   K    + +  E +V   I   PV+D++ ++ G++++ D+L
Sbjct: 224 RMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 13/55 (23%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V + M +  ++  +K    +DEA+E  + K + G P+++D+ +L+ ++++ D++
Sbjct: 85  PVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI 137

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
              + D++T+  D+        + +    +V       PV+ +  +LVG+++  D +
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFI 200

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLL 128
           +     K   +  V  TTT+ +AL  + E +    PV++  + K+VG+++  D++
Sbjct: 6   MKIAQNK--KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV 58

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
              +FMT    L  ++  + +  AL  + +  I   PV+DD   L G++S  D+ 
Sbjct: 68  KAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT 120

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V ++M     + +V     +++  + + EK I    V+D + K VG++++ D++
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIV 56

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 62  ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGV 121
                   +  + V  FM+    +  +     +D+A++ ++ +     PVIDDD K+VG+
Sbjct: 145 FLLLYKDLDEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGI 202

Query: 122 VSDYDLL 128
           V+  + +
Sbjct: 203 VTVVNAI 209

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            + D+MT   +   V  T+    A+  +V +     PV+D + K VG+V++ + L L   
Sbjct: 94  PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 134 SGSMRKLG 141
              +  + 
Sbjct: 152 LDEIFPVK 159

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D M    +L  +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 228 VVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 280

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            +   M K  +   +     +  A +++ E  I    V ++  K+ G+++  DLL
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLL 71

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 60.7 bits (147), Expect = 1e-11
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLAL 130
           +   D +     L    T+  V +A   LV   +   P+ D      VG+++  D + +
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI 93

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
           +        ++  V+TTT V  AL   V+ R++  PV+D+  ++V + S +D++ L
Sbjct: 195 LQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL 248

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 74  TVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +V   +  +    E +       T++  + RLVE  +    V+D+   + G+VS  D+L
Sbjct: 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDL 127
           +  T+         + L  +    ++ +A+  L+  +I   PVID +    + +++   +
Sbjct: 112 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRI 171

Query: 128 LALDSISGS 136
           L    +  +
Sbjct: 172 LKFLKLFIT 180

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V DF +       +    +V +A+  +  + +    V+D D  LVGV+S  DLL
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL 69

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 57.3 bits (139), Expect = 5e-11
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLL 128
            V   MT+  ++   +    V +  + L+EK+I   PVI D    ++++G V+  ++ 
Sbjct: 82  PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT 139

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 58.0 bits (139), Expect = 9e-11
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 46  FTVSREVKAFAHNGVGITNSVPPRNGTYTV--------GDFMTKKEDLHAVKTTTTVDEA 97
            T S+E+   A     IT    P +              D++  K++L AV T   V++ 
Sbjct: 150 HTPSKEIIELAKKN-NITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDV 208

Query: 98  LERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
              + E R + +PVID++ K+VG ++ + L+
Sbjct: 209 KVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 7/117 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
            V D       +  +    ++  A   + +K +   PV D +  L+G++S  ++ A    
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65

Query: 134 SGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLT--VEGAMTANIISSFLT 188
                 L  +     N  +   A                   V  AM A  +  F++
Sbjct: 66  IWDSNILAKSATSLDNILDTLSAEAQ---NINEERKVFPGKVVVAAMQAESLKEFIS 119

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 72  TYTVGDFMTKKEDLHAV----KTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDY 125
                D M  + +   +    + + TV++    + E   +GFPV+      +LVG V   
Sbjct: 10  KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 69

Query: 126 DLL 128
           DL+
Sbjct: 70  DLI 72

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           T  + + +        V   T ++  ++   +  +    V  +  +L+G+++  D+L
Sbjct: 107 TLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 160

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +V   MTK  ++   +  +T D+ +E +   R    PV ++  +L G++S  D++
Sbjct: 94  SVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RLAGIISIGDVV 145

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 74  TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D + +K  D+  V    ++ EA   L   +I    V D D  ++G+ ++ DL+
Sbjct: 25  FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV 80

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V + MT+   +  V    T ++ +  + E R+   PV+DD  K++G++S  DL+
Sbjct: 75  QVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 126

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 74  TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           TV   + +K   + A+    +V  A++++    I    V+ D+ KLVG++++ D  
Sbjct: 7   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFS 61

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 14/52 (26%), Positives = 32/52 (61%)

Query: 79  MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
           +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L L
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 245

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 55.7 bits (134), Expect = 7e-10
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 74  TVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +VG+ + ++    E ++       +   ++ + + R+  F V+DD  +LVGV++  D+L
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLAL 130
           + T  D +     L  + T+  V ++L  L++  I   P+ D    +  G+++  D + +
Sbjct: 29  SKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINV 88

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V + MT    +  V+ + + DE +  + E R+   PV+D   KL+G++S  DL+
Sbjct: 79  RVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLDGG-KLIGLISIGDLV 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 68  PRNGTYTVGDFMTKKE----DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
           P + + TV   +  K      ++ V     V +A++ + EK I    V+D D  + G+V+
Sbjct: 2   PGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVT 60

Query: 124 DYDLL 128
           + D  
Sbjct: 61  ERDYA 65

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +   + +  D+  VK   T+ +A + ++E       V+D   K VG+++  D++
Sbjct: 62  LAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 55.6 bits (134), Expect = 7e-10
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +     V + MT+  D+       TV E   ++ +  I   PVI  +  L+G++ D+DLL
Sbjct: 217 QLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           V   MT+  +   +    T + ALE   + ++  FPV++ + KLVG++S   +L
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL 54

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            +  +  +   +  V   T +  AL+ L+       PV+D +  LVG+V + DLL
Sbjct: 127 EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 54.0 bits (130), Expect = 4e-10
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 70  NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
           N + T       + D        +  +A  RL        PV+D + + +G+V    LL 
Sbjct: 2   NASVTFSYLA--ETDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLE 58

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 70  NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
                +G+ + +   + + +    + + L  +   + +  P+ D+D +  GVVS   +L 
Sbjct: 65  TVKEKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG 122

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 74  TVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +VG+ + K+    + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 310

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 83  EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
            +L      T V + ++ L EK I+  P+++ +  L+ V    D++ L
Sbjct: 193 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL 240

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLL 128
            V  FM     +  +   T ++E ++ +    +T +P+++      LVG+V    L+
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLV 68

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
                         V  T  V  A E++    I    V++ + +LVGV+S  DL 
Sbjct: 72  PAMPIANS---PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDLL 128
              + + +     ++  T T+ E    L + R+    +   D+  + V VVS+ D+L
Sbjct: 6   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL 60

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 60  VGI-TN---SVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD 115
           +G+ T     +        V D MT    L      T + EA + + EK++   P+IDDD
Sbjct: 144 LGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD 203

Query: 116 WKLVGVV 122
             L  +V
Sbjct: 204 QHLRYIV 210

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 60  VGI-TNS----VPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD 114
           VGI T+     +  ++ T  + + MT + +L       T+ EA E L   +    P+++D
Sbjct: 155 VGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND 214

Query: 115 DWKLVGVVSDYDL 127
             +LV +++  DL
Sbjct: 215 CDELVAIIARTDL 227

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 60  VGI-TNSVPPR------NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI 112
           VG+ TN    R      N +  + D MT +E L       ++++A E L + RI   P++
Sbjct: 139 VGLLTN----RDVRFEKNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLV 194

Query: 113 DDDWKLVG 120
             D KLVG
Sbjct: 195 SKDNKLVG 202

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 14/37 (37%), Positives = 27/37 (72%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
             TV EA++ + E +I G PV+D++ +LVG++++ D+
Sbjct: 111 DMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 60  VGI-TNSVPPR------NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI 112
           VGI T     R      + T +V   MT KE L  VK   T  E  E++ + R+    V+
Sbjct: 133 VGIITG----RDVRFVTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVV 188

Query: 113 DDDWKLVG 120
           +D+++L G
Sbjct: 189 NDEFQLKG 196

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
             T+ + +E        GFPV+ ++ +LVG+++  D+
Sbjct: 105 EQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV 141

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 67  PPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVE-KRITGFPVIDDDWKLVGVVSDY 125
             R+   T  + M   E    +   +        L +      FPVID +  L+G +S  
Sbjct: 447 RDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRK 506

Query: 126 DLL 128
           +++
Sbjct: 507 EIV 509

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 12/68 (17%)

Query: 60  VGI-TNSVPPR------NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI 112
           VGI TN    R      + +  + D MTK E L      TT+ EA + L + +I   P++
Sbjct: 159 VGIITN----RDMRFIQDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLV 213

Query: 113 DDDWKLVG 120
           D++  L G
Sbjct: 214 DNNGVLQG 221

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKR--ITGFPVIDDDWKLVGVVSDYDL 127
            V D M   +++  V    T+ +AL  +  K   +T   + DDD  ++G+ +D DL
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA--ICDDDMNIIGIFTDGDL 82

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 13/60 (21%)

Query: 74  TVGDFMTKK-----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           ++ D MT+          AV       +AL  +  + IT   V D D  L+GVV  +DLL
Sbjct: 96  SIADVMTRGGIRIRPGTLAV-------DALNLMQSRHITCVLVADGD-HLLGVVHMHDLL 147

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 60  VGI-TNSVPPR------NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI 112
           VGI TN    R      +    + + MT  E L      T ++ A   L E RI   P++
Sbjct: 136 VGIITN----RDMRFISDYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLV 190

Query: 113 DDDWKLVG 120
           D+  +L G
Sbjct: 191 DNSGRLSG 198

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVG 120
           V + MTK  ++  V  +  V+EAL+ ++E RI   PV+D+  KLVG
Sbjct: 152 VKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVG 195

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 91  TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
             TVD AL  + +  I G PV++D+ K+VG+++  D+
Sbjct: 109 DETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI 144

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 67  PPRNGTY--TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWK--LVGVV 122
                 Y   VGD M +  D+ ++ +T+T  + L  L + ++  FP +D      L+G +
Sbjct: 5   WSSANKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSI 62

Query: 123 SDYDLLAL 130
              ++  L
Sbjct: 63  DRTEVEGL 70

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFP-------VIDDDWKLVGVVSDY 125
              G  MT   +  AV+   TV+E L  L  +R            V+D+  +L GV+S  
Sbjct: 135 DEAGGLMTP--EYVAVREGMTVEEVLRFL--RRAAPDAETIYYIYVVDEKGRLKGVLSLR 190

Query: 126 DLL 128
           DL+
Sbjct: 191 DLI 193

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFP-------VIDDDWKLVGVVSDY 125
            T G  MT   +  ++    TV  A+  L  K             V+D +  LVGV+S  
Sbjct: 137 ETAGAIMTT--EFVSIVANQTVRSAMYVL--KNQADMAETIYYVYVVDQENHLVGVISLR 192

Query: 126 DLL 128
           DL+
Sbjct: 193 DLI 195

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLAL 130
           T+   M  + D+  +     +D  L  +++   + FPV  ++   +VG++S   LL+ 
Sbjct: 43  TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSE 100

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 82  KEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLA 129
                 +K+  TV EA+  + + R+   PV+D DD  ++GVV    L+ 
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLIT 440

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEK---RITGFPVIDDDWKLVGVVSDYDLL 128
             +G +      +  +    TV +A                ++D+  K +G V  YD+ 
Sbjct: 54  NEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF 110

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLL 128
             G  MT   +  AV+   TV+E L  L         I    V+D+  +L GV+S  DL+
Sbjct: 156 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI 213

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLAL 130
           ++   MT + D+  V          ++L     + FPV      ++VG+    DL+A 
Sbjct: 37  SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVAD 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.85
3ddj_A	296	CBS domain-containing protein; structural genomics	99.85
3ddj_A	296	CBS domain-containing protein; structural genomics	99.84
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.84
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.83
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.83
4esy_A	170	CBS domain containing membrane protein; structural	99.82
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.81
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.78
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.78
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.77
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.77
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.76
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.75
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.75
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.75
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.74
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.74
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.74
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.74
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.73
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.72
4esy_A	170	CBS domain containing membrane protein; structural	99.72
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.72
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.72
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.72
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.72
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.72
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.71
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.71
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.7
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.7
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.7
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.7
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.7
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.7
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.7
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.7
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.7
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.69
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.69
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.69
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.69
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.69
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.68
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.68
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.67
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.67
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.67
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.67
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.67
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.66
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.66
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.66
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.66
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.66
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.65
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.65
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.65
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.64
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.64
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.64
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.64
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.63
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.63
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.62
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.62
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.62
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.62
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.62
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.62
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.62
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.61
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.61
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.61
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.61
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.61
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.61
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.61
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.6
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.6
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.6
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.6
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.59
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.59
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.59
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.58
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.57
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.56
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.56
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.55
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.55
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.55
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.53
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.52
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.52
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.52
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.52
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.5
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.5
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.49
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.48
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.48
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.46
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.45
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.42
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.4
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.4
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.37
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.35
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.33
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.33
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.33
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.29
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.28
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.24
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.23
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.22
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.21
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.21
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.18
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.12
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.06
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.99
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.79
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.09
1tif_A	78	IF3-N, translation initiation factor 3; IF3 N-term	80.48

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.85  E-value=6.6e-21  Score=146.97  Aligned_cols=173  Identities=12%  Similarity=0.078  Sum_probs=136.7

Q ss_pred             cccccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      ..-.++.+|+++|.+++++++||+|  +|+++  +|.+|+++......   ....+.... .   .........+++++|
T Consensus        18 ~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~---~~~~~~~~~-~---~~~~~~~~~~v~~im   90 (280)
T 3kh5_A           18 YPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS---KYNLIREKH-E---RNFLAAINEPVREIM   90 (280)
T ss_dssp             CTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSG---GGHHHHTTS-T---TCHHHHTTSBGGGTS
T ss_pred             CCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccc---hhhhhhhcc-c---cchhHHhhhhHHHhc
Confidence            3457899999999999999999999  58899  99999985321100   000111000 0   000011256899999


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc-ccccccccccCcc-cCCcchHH
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS-MRKLGFNLYFGFN-SGNAYFAR  157 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~  157 (188)
                      .+  ++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++.+..... ..++.++|.+.+. +.+++++.
T Consensus        91 ~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~  168 (280)
T 3kh5_A           91 EE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLK  168 (280)
T ss_dssp             BC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHH
T ss_pred             CC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHH
Confidence            98  89999999999999999999999999999988999999999999987654433 3367888876655 99999999


Q ss_pred             HHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          158 WLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       158 ~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      ++.+.|.+++.+.+||++++.+.|++|.
T Consensus       169 ~~~~~~~~~~~~~~~Vv~~~~~~Givt~  196 (280)
T 3kh5_A          169 DVARTMVRNGFRRLPVVSEGRLVGIITS  196 (280)
T ss_dssp             HHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence            9999999999999999999999999985

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.85  E-value=2.5e-21  Score=150.88  Aligned_cols=155  Identities=16%  Similarity=0.163  Sum_probs=133.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -+++.+|+++|.+++++++||+| +|+++  +|.+|+++...                       ......+++++|.+ 
T Consensus       109 ~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~-----------------------~~~~~~~v~~~m~~-  164 (296)
T 3ddj_A          109 TSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK-----------------------DLDEIFPVKVFMST-  164 (296)
T ss_dssp             TSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG-----------------------GSCCCCBHHHHSBC-
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhh-----------------------cccccccHHHhhcC-
Confidence            46789999999999999999998 88888  99999884221                       12234589999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc--------CcccccccccccCcc-cCCc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS--------GSMRKLGFNLYFGFN-SGNA  153 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--------~~~~~~~~~~~~~~~-~~~~  153 (188)
                       ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++.+...        ....++.++|.+.+. +.++
T Consensus       165 -~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~  243 (296)
T 3ddj_A          165 -KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDEL  243 (296)
T ss_dssp             -SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCTT
T ss_pred             -CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECCC
Confidence             899999999999999999999999999999889999999999999876521        123457788886665 9999


Q ss_pred             chHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          154 YFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       154 ~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +++.++.++|.+++.+.+||++ ++.+.|+||.
T Consensus       244 ~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~  276 (296)
T 3ddj_A          244 ASVNRAAAEMIVKRIGSLLILNKDNTIRGIITE  276 (296)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             CcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcH
Confidence            9999999999999999999998 7899999985

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.84  E-value=1.1e-20  Score=147.29  Aligned_cols=165  Identities=15%  Similarity=0.082  Sum_probs=136.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCccccccccccc--chhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTV--SREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||+| |+++  +|.+|+++.......  .....+             ......+++++|.
T Consensus        35 ~~~~v~~a~~~m~~~~~~~~~V~d-~~l~GivT~~Di~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~im~  100 (296)
T 3ddj_A           35 KEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLLSTVESYCKDSCSQGDL-------------YHISTTPIIDYMT  100 (296)
T ss_dssp             TTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHHGGGTTCC---CCHHHH-------------HHHHTSBGGGTSE
T ss_pred             CCccHHHHHHHHHHCCCceEEEEC-CeEEEEEeHHHHHHHhcccccccccchhh-------------HHHhcccHHHhcc
Confidence            457899999999999999999999 9999  999999853211000  000000             0122568999999


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHH
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWL  159 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v  159 (188)
                      +  ++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++.........++.++|.+.+. +.+++++.++
T Consensus       101 ~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~  178 (296)
T 3ddj_A          101 P--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQA  178 (296)
T ss_dssp             E--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHH
T ss_pred             C--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHH
Confidence            8  899999999999999999999999999999889999999999999877665556678888876655 9999999999


Q ss_pred             HHHHhccCceEEEEEe-CCEeeceeec
Q 029781          160 LKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       160 ~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.|.+++...+||++ ++.+.|++|.
T Consensus       179 ~~~m~~~~~~~~~Vvd~~~~~~Givt~  205 (296)
T 3ddj_A          179 VKLMLRRGFRRLPVIDDDNKVVGIVTV  205 (296)
T ss_dssp             HHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             HHHHHHcCCCEEEEEcCCCEEEEEEEH
Confidence            9999999999999998 7899999985

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.84  E-value=7.1e-21  Score=146.79  Aligned_cols=155  Identities=12%  Similarity=0.144  Sum_probs=130.7

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|+++|.+++++++||+| +|+++  +|.+|+++....                      ......+++++|.+ 
T Consensus       100 ~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~----------------------~~~~~~~v~~~m~~-  156 (280)
T 3kh5_A          100 NADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD----------------------KIDENEVIDDYITR-  156 (280)
T ss_dssp             TCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGG----------------------GSCTTCBSGGGCBC-
T ss_pred             CCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhh----------------------cCCCCCCHHHHhCC-
Confidence            46789999999999999999999 88999  999998742110                      11223589999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-------------cccccccccccCcc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-------------SMRKLGFNLYFGFN  149 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-------------~~~~~~~~~~~~~~  149 (188)
                       ++.++.+++++.++++.|.+++.+.+||+ ++|+++|+||.+|+++.....+             ...++.++|.+.+.
T Consensus       157 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~  234 (280)
T 3kh5_A          157 -DVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVI  234 (280)
T ss_dssp             -SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHSBSSCC
T ss_pred             -CCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHhcCCCE
Confidence             89999999999999999999999999999 4799999999999998764322             23457788876655


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEeCC-Eeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVEGA-MTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~~~-~~~giit~  185 (188)
                       +.+++++.++.+.|.+++.+.+||++++ .+.|+||.
T Consensus       235 ~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~  272 (280)
T 3kh5_A          235 TAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITE  272 (280)
T ss_dssp             CBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEH
T ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeH
Confidence             9999999999999999999999999865 99999985

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.83  E-value=4.4e-20  Score=142.68  Aligned_cols=157  Identities=15%  Similarity=0.105  Sum_probs=130.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccc-cccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSK-RLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -.++.+|++.|.+++++.+||+| +|+++  +|.+|+.+ ....                     .......+++++|.+
T Consensus        76 ~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~---------------------~~~~~~~~v~~~m~~  134 (282)
T 2yzq_A           76 NDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK---------------------SEKYKGVEIEPYYQR  134 (282)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT---------------------CSGGGGCBSTTTSBS
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhc---------------------cCCcccCcHHHHhCC
Confidence            46899999999999999999999 78888  99999874 2210                     011235678999988


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHh------hchh------c----------------
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL------ALDS------I----------------  133 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~------~~~~------~----------------  133 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|++      ++..      .                
T Consensus       135 --~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (282)
T 2yzq_A          135 --YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFE  212 (282)
T ss_dssp             --CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------
T ss_pred             --CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHh
Confidence              899999999999999999999999999999889999999999999      4432      0                


Q ss_pred             ----cCcccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          134 ----SGSMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       134 ----~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                          .....++.++|.+.+. +.+++++.++.++|.+++.+.+||+++ +.+.|+||.
T Consensus       213 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~  270 (282)
T 2yzq_A          213 KFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRD  270 (282)
T ss_dssp             ------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEH
T ss_pred             HhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeH
Confidence                0123457889987766 999999999999999999999999997 599999985

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.83  E-value=5.2e-20  Score=142.25  Aligned_cols=152  Identities=15%  Similarity=0.034  Sum_probs=114.1

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+++.+|+++|.+++++++||+| +|+++  +|.+|++..                           ....+++++|.+
T Consensus        16 ~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~---------------------------~~~~~v~~~m~~   68 (282)
T 2yzq_A           16 LPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN---------------------------PDEEQLAMLVKR   68 (282)
T ss_dssp             SSCC------------CCEEEEECTTCCEEEEEESSCC-------------------------------------CCCBS
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhh---------------------------hccCCHHHHcCC
Confidence            346899999999999999999999 89999  999998721                           124678999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh-chhcc--CcccccccccccCcc-cCCcchHH
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA-LDSIS--GSMRKLGFNLYFGFN-SGNAYFAR  157 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~-~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~  157 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++ .+...  ....++.++|.+.+. +.++.++.
T Consensus        69 --~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~  146 (282)
T 2yzq_A           69 --DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLK  146 (282)
T ss_dssp             --CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBSCCCCEETTSBHH
T ss_pred             --CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCCCCEEECCCCCHH
Confidence              8899999999999999999999999999998899999999999998 66532  223456788876555 89999999


Q ss_pred             HHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          158 WLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       158 ~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      ++.+.|.+++...+||++ ++.+.|++|.
T Consensus       147 ~~~~~~~~~~~~~l~Vvd~~~~~~Giit~  175 (282)
T 2yzq_A          147 AALKALLLSNSMALPVVDSEGNLVGIVDE  175 (282)
T ss_dssp             HHHHHHHTCSSSEEEEECTTSCEEEEEEG
T ss_pred             HHHHHHHHcCCcEEEEEcCCCeEEEEEEH
Confidence            999999999999999997 6789999984

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.82  E-value=1.2e-19  Score=130.75  Aligned_cols=113  Identities=15%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---------------
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---------------  135 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---------------  135 (188)
                      ...+|+|+|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++......               
T Consensus        16 ~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T 4esy_A           16 RQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAP   93 (170)
T ss_dssp             HTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHH
T ss_pred             cCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchh
Confidence            36799999999  9999999999999999999999999999999999999999999987543221               


Q ss_pred             ---------cccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          136 ---------SMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       136 ---------~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                               ...++.++|.+++. +.+++++.+++++|.+++++.+||++++.+.|+||.
T Consensus        94 ~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~  153 (170)
T 4esy_A           94 EVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTR  153 (170)
T ss_dssp             HHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEH
T ss_pred             hHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEH
Confidence                     12346778877776 999999999999999999999999999999999985

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.81  E-value=4.8e-20  Score=145.29  Aligned_cols=160  Identities=16%  Similarity=0.170  Sum_probs=131.6

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCc-----eE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPI-----TV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD   77 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~-----l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   77 (188)
                      -.++.+|++.|.+++++++||+| ++.     ++  +|.+|+++....            ..      ........++++
T Consensus       130 ~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~------------~~------~~~~~~~~~v~~  191 (323)
T 3t4n_C          130 SRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVAL------------NC------RETHFLKIPIGD  191 (323)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHH------------HC------GGGGGCCSBGGG
T ss_pred             CCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHh------------cC------CchhhhhCcHHH
Confidence            46889999999999999999999 554     77  999999842210            00      001123457889


Q ss_pred             c---cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---ccccccccccc-----
Q 029781           78 F---MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLYF-----  146 (188)
Q Consensus        78 i---m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~-----  146 (188)
                      +   |.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++++....   ...++.++|.+     
T Consensus       192 ~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~  269 (323)
T 3t4n_C          192 LNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDF  269 (323)
T ss_dssp             TTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGGSCTTC
T ss_pred             cCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhhccccC
Confidence            9   887  8999999999999999999999999999998899999999999998765432   23457788876     


Q ss_pred             -Ccc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          147 -GFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       147 -~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                       .+. +.+++++.++.++|.+++.+.+||++ ++.+.|+||.
T Consensus       270 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~  311 (323)
T 3t4n_C          270 EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTL  311 (323)
T ss_dssp             CCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEH
T ss_pred             CCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEH
Confidence             444 99999999999999999999999998 6899999985

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.78  E-value=8.6e-19  Score=120.31  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=100.5

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccCccc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNS  150 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (188)
                      +.+++++|++..++.++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|++++........++.++|.++..+
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~~~~~v   81 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVV   81 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCBCCCEE
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcCCCeEE
Confidence            46899999972258999999999999999999999999999987 89999999999998876555566788899886669


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~  117 (127)
T 3nqr_A           82 PESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTI  117 (127)
T ss_dssp             ETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEH
T ss_pred             CCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEH
Confidence            9999999999999999999999998 5899999985

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.78  E-value=2e-18  Score=118.88  Aligned_cols=112  Identities=15%  Similarity=0.202  Sum_probs=99.0

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccCccc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNS  150 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~  150 (188)
                      ..+++++|+++.++.++++++++.+|++.|.+++++++||+|++ |+++|+||.+|++++...  ...++.++|.+...+
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~--~~~~v~~~m~~~~~v   81 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE--PALDIRSLVRPAVFI   81 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC--TTSCGGGGCBCCCEE
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc--CCcCHHHHhCCCeEe
Confidence            57899999953378899999999999999999999999999975 899999999999987652  345578888886669


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .+++++.+++++|.+++.+.+||+++ +.+.|++|.
T Consensus        82 ~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~  117 (129)
T 3jtf_A           82 PEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTM  117 (129)
T ss_dssp             ETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEH
T ss_pred             CCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEH
Confidence            99999999999999999999999986 899999985

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.78  E-value=1.3e-18  Score=120.82  Aligned_cols=114  Identities=19%  Similarity=0.212  Sum_probs=99.2

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhc-cCcccccccccccCcc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSI-SGSMRKLGFNLYFGFN  149 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~-~~~~~~~~~~~~~~~~  149 (188)
                      +.+++++|+++.++.++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|++++... .....++.++|.++..
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~~~~   81 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRPATF   81 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBCCCE
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCCCeE
Confidence            46899999954378999999999999999999999999999987 799999999999987652 2344568899988666


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~  118 (136)
T 3lfr_A           82 VPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTI  118 (136)
T ss_dssp             EETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEH
T ss_pred             ECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEH
Confidence            99999999999999999999999997 4899999985

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.77  E-value=6.8e-19  Score=121.31  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN  149 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~  149 (188)
                      ...+++++|++..++.++++++++.+|++.|.+++++++||+|++ |+++|+||.+|++++........++.++|.+...
T Consensus         4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m~~~~~   83 (130)
T 3i8n_A            4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVMRPIQV   83 (130)
T ss_dssp             ---CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHSEECCE
T ss_pred             CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHhcCCcC
Confidence            357899999964366789999999999999999999999999987 8999999999999887665556668888977666


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +.+++++.+++++|.+++.+.+||+++ +.+.|++|.
T Consensus        84 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~  120 (130)
T 3i8n_A           84 VLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTL  120 (130)
T ss_dssp             EETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEH
T ss_pred             cCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEH
Confidence            999999999999999999999999975 899999985

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.77  E-value=3.8e-18  Score=120.03  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=102.0

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccC
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFG  147 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~  147 (188)
                      .....+++++|+++.++.++++++++.+|++.|.+++++++||+|++ |+++|+||.+|++++..... ..++.++|.+.
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-~~~v~~~m~~~   97 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-KIELEEILRDI   97 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-CCCGGGTCBCC
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-CccHHHhcCCC
Confidence            34578999999976678999999999999999999999999999987 89999999999998765443 55678889555


Q ss_pred             cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ..+.+++++.+++++|.+++.+.+||+++ +.+.|+||.
T Consensus        98 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~  136 (148)
T 3lv9_A           98 IYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTI  136 (148)
T ss_dssp             EEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEH
T ss_pred             eEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEH
Confidence            55999999999999999999999999986 899999985

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.76  E-value=2.2e-18  Score=136.38  Aligned_cols=160  Identities=14%  Similarity=0.103  Sum_probs=128.6

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cC-c----eE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LP-I----TV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD   77 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~-~----l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   77 (188)
                      -.++.+|++.|.+++++++||+| ++ +    ++  +|.+|+++....    ..    .          .......++++
T Consensus       125 ~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~----~~----~----------~~~~~~~~v~~  186 (334)
T 2qrd_G          125 MHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM----NC----K----------ETAMLRVPLNQ  186 (334)
T ss_dssp             TSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHH----HC----G----------GGGGCCCBGGG
T ss_pred             CCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHh----hc----c----------chhhhhCcHHH
Confidence            35789999999999999999999 54 4    78  999998842210    00    0          00112456778


Q ss_pred             ---ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---cccccccccc------
Q 029781           78 ---FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLY------  145 (188)
Q Consensus        78 ---im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~------  145 (188)
                         +|.+  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++++....   ...++.++|.      
T Consensus       187 l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~  264 (334)
T 2qrd_G          187 MTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANF  264 (334)
T ss_dssp             SSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTCCTTC
T ss_pred             hCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHHHhcccccC
Confidence               5887  8999999999999999999999999999998899999999999998765432   2345677787      


Q ss_pred             -cCcccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          146 -FGFNSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       146 -~~~~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                       +...+.+++++.++.++|.+++.+.+||++ ++.+.|+||.
T Consensus       265 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~  306 (334)
T 2qrd_G          265 DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSL  306 (334)
T ss_dssp             CCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEH
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Confidence             344499999999999999999999999998 5899999985

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.75  E-value=4.2e-18  Score=134.62  Aligned_cols=163  Identities=19%  Similarity=0.189  Sum_probs=127.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc--c
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF--M   79 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--m   79 (188)
                      -.++.+|+++|.+++++.+||+|  +|+++  +|.+|+++......           . .   .........++.++  |
T Consensus       134 ~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~-----------~-~---~~~~~~~~~~v~~~~v~  198 (330)
T 2v8q_E          134 NASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI-----------T-E---FPKPEFMSKSLEELQIG  198 (330)
T ss_dssp             TSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS-----------C-S---SSCCGGGGSBHHHHTCS
T ss_pred             CCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHh-----------h-c---cCchhhhcCCHHHhccc
Confidence            46889999999999999999999  58888  99999884221000           0 0   00011122355565  5


Q ss_pred             c-cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---ccccccccc-------ccCc
Q 029781           80 T-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNL-------YFGF  148 (188)
Q Consensus        80 ~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~-------~~~~  148 (188)
                      . +  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|++++.....   ...++.++|       .+..
T Consensus       199 ~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  276 (330)
T 2v8q_E          199 TYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVL  276 (330)
T ss_dssp             BCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCCSCC
T ss_pred             CcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhccccccCCCe
Confidence            4 5  7899999999999999999999999999998899999999999998775432   134566666       3444


Q ss_pred             ccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          149 NSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       149 ~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .+.+++++.++.++|.+++.+.+||+++ +.+.|+||.
T Consensus       277 ~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~  314 (330)
T 2v8q_E          277 KCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSL  314 (330)
T ss_dssp             EECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             EECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeH
Confidence            4999999999999999999999999985 899999985

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.75  E-value=2.9e-18  Score=118.31  Aligned_cols=113  Identities=8%  Similarity=-0.038  Sum_probs=97.6

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhhchhccCc--ccccccccccCcc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSISGS--MRKLGFNLYFGFN  149 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~~~~~  149 (188)
                      .+++++|+++.++.++++++++.+|++.|.+++++++||+++ +|+++|++|.+|++++......  ..++.++|.++..
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m~~~~~   81 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAADEIYF   81 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHSBCCCE
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhccCCeE
Confidence            578999976447899999999999999999999999999975 5899999999999987765332  2346788877767


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+++++.+++++|.+++.+.+||++ ++.+.|++|.
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~  118 (130)
T 3hf7_A           82 VPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTV  118 (130)
T ss_dssp             EETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEH
T ss_pred             eCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeH
Confidence            99999999999999999999999997 5899999985

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.75  E-value=7.2e-18  Score=125.88  Aligned_cols=140  Identities=15%  Similarity=0.027  Sum_probs=89.5

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|+++|.+++++++||+| +|+++  +|.+|+.+.                           ....+++++|.+ 
T Consensus        29 ~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~---------------------------~~~~~v~~im~~-   80 (213)
T 1vr9_A           29 SATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL---------------------------DLDSSVFNKVSL-   80 (213)
T ss_dssp             TCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS---------------------------CTTSBSGGGCBC-
T ss_pred             CCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh---------------------------cCCCcHHHHccC-
Confidence            46899999999999999999999 88999  999998731                           114579999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHH
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKF  162 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (188)
                       ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++..............+... .......+.++.+.
T Consensus        81 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~  158 (213)
T 1vr9_A           81 -PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAMDVPGIRFSVL-LEDKPGELRKVVDA  158 (213)
T ss_dssp             -TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSCC--------------------------
T ss_pred             -CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHhcCCCCcEEEEEE-eCCCCccHHHHHHH
Confidence             8999999999999999999999999999998899999999999998765332211111111111 11333458888999


Q ss_pred             HhccCceEEEEEe
Q 029781          163 VGGINCGFLLTVE  175 (188)
Q Consensus       163 l~~~~~~~~~vv~  175 (188)
                      |.+++.+.++|+.
T Consensus       159 l~~~~~~~l~V~~  171 (213)
T 1vr9_A          159 LALSNINILSVIT  171 (213)
T ss_dssp             -------------
T ss_pred             HHHCCCcEEEEEE
Confidence            9999999988874

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.74  E-value=9.1e-18  Score=119.28  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=100.6

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCC-cEEEEEehHHHhhchhccCcccccccccccCc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDSISGSMRKLGFNLYFGF  148 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  148 (188)
                      ....+++++|+++.++.++++++++.+|++.|.+++++++||+|+++ +++|+||.+|++++.... ...++.++|.++.
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-~~~~v~~im~~~~  113 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-EQFHLKSILRPAV  113 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-GGCCHHHHCBCCC
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-CcccHHHHcCCCE
Confidence            34678999998754688999999999999999999999999999774 999999999999876543 4456788898866


Q ss_pred             ccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 NSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus       114 ~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~  151 (156)
T 3oi8_A          114 FVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTF  151 (156)
T ss_dssp             EEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEH
T ss_pred             EECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEH
Confidence            699999999999999999999999997 5899999985

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.74  E-value=1.3e-17  Score=113.32  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=97.4

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cC
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SG  151 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~  151 (188)
                      ++++++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|++++.....  .++.++|.+.+. +.
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~--~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK--KTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTC--CBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcc--cCHHHHhcCCCeEEC
Confidence            368899998  8999999999999999999999999999998899999999999998765432  367888876665 99


Q ss_pred             CcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          152 NAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       152 ~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +++++.+++++|.+++...+||+++ +.+.|++|.
T Consensus        77 ~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~  111 (122)
T 3kpb_A           77 EDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTS  111 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEH
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeH
Confidence            9999999999999999999999987 899999985

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.74  E-value=2.4e-17  Score=116.11  Aligned_cols=114  Identities=18%  Similarity=0.196  Sum_probs=100.4

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN  149 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~  149 (188)
                      ..+++++|.+..++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++++....  ...++.++|.+.+.
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~  106 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGI  106 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESCC
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCCe
Confidence            3589999987546889999999999999999999999999998899999999999998765433  34567888876665


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                       +.+++++.+++++|.+++...+||++++.+.|+||.
T Consensus       107 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~  143 (149)
T 3k2v_A          107 RIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHM  143 (149)
T ss_dssp             EECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEH
Confidence             999999999999999999999999999999999985

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.74  E-value=1.7e-17  Score=119.73  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=98.1

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccC
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFG  147 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~  147 (188)
                      .....+++++|+++.++.++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|++++..... ..++.++|.++
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-~~~v~~im~~~  116 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-RLELVDLVKNC  116 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-CCCGGGGCBCC
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-cccHHHHhcCC
Confidence            34568999999943378999999999999999999999999999987 89999999999998765432 45678899555


Q ss_pred             cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      ..+.+++++.+++++|.+++.+.+||+++ +.+.|+||.
T Consensus       117 ~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~  155 (172)
T 3lhh_A          117 NFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTL  155 (172)
T ss_dssp             EEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             eEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeH
Confidence            55999999999999999999999999986 899999985

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.73  E-value=1.8e-17  Score=113.72  Aligned_cols=112  Identities=18%  Similarity=0.133  Sum_probs=99.4

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcc-cccccccccCcc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSM-RKLGFNLYFGFN  149 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~-~~~~~~~~~~~~  149 (188)
                      ...+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|+ |+++|++|.+|+++........ .++.++|.+.+.
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~   79 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVR   79 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBCCC
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCCCc
Confidence            35789999999  8999999999999999999999999999998 9999999999999877554433 557888876665


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                       +.+++++.++++.|.+++...+||++ ++.+.|++|.
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~  117 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSR  117 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEH
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEH
Confidence             99999999999999999999999996 6899999985

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.72  E-value=2.5e-17  Score=117.23  Aligned_cols=111  Identities=18%  Similarity=0.181  Sum_probs=94.9

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC------ccccccccccc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG------SMRKLGFNLYF  146 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~------~~~~~~~~~~~  146 (188)
                      .+++++|+|+.++.++.+++++.+|++.|.+++++++||+|++|+++|+||.+|++++.....      ...++.++|.+
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~   94 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT   94 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC
Confidence            478899998878999999999999999999999999999998899999999999997664332      23457888887


Q ss_pred             Ccc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          147 GFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       147 ~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+. +.+++++.+++++|.+++.  +||++ +|.+.|+||.
T Consensus        95 ~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~  133 (156)
T 3k6e_A           95 DVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITR  133 (156)
T ss_dssp             SCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEH
T ss_pred             CceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEH
Confidence            766 9999999999999987664  78886 5899999985

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.72  E-value=2.5e-18  Score=123.81  Aligned_cols=125  Identities=18%  Similarity=0.149  Sum_probs=92.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCC-CCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGI-TNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~im~   80 (188)
                      .-+++.+|+++|.+++++++||+| +|+++  +|.+|+++.............+....... ...........+++++|+
T Consensus        33 ~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~  112 (170)
T 4esy_A           33 EDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMT  112 (170)
T ss_dssp             TTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCB
T ss_pred             CcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhhhccccccchhhhcc
Confidence            457899999999999999999999 89999  99999986432211111111100000000 000001123568999999


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  +++++.+++++.+|++.|.+++++++||+| +|+++|+||..|+++++.
T Consensus       113 ~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A          113 Q--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             C--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSC
T ss_pred             c--CcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            9  999999999999999999999999999998 599999999999998764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.72  E-value=4e-17  Score=116.38  Aligned_cols=112  Identities=23%  Similarity=0.227  Sum_probs=98.5

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc----------cCcccccc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI----------SGSMRKLG  141 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~----------~~~~~~~~  141 (188)
                      ..+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|++++...          .....++.
T Consensus         4 ~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~   81 (160)
T 2o16_A            4 MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF   81 (160)
T ss_dssp             CCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred             cCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHH
Confidence            4689999998  89999999999999999999999999999988999999999999976532          12344578


Q ss_pred             cccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          142 FNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       142 ~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      ++|.+.+. +.+++++.+++++|.+++...+||++++.+.|+||.
T Consensus        82 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~  126 (160)
T 2o16_A           82 EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITD  126 (160)
T ss_dssp             HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECH
T ss_pred             HHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEH
Confidence            88877666 999999999999999999999999999999999985

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.72  E-value=4.2e-17  Score=111.08  Aligned_cols=109  Identities=18%  Similarity=0.135  Sum_probs=96.9

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc-c
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN-S  150 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~-~  150 (188)
                      +++++|.+  ++.++.+++++.+|++.|.+++.+.+||+| +|+++|++|.+|+++......  ...++.++|.+.+. +
T Consensus         2 ~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v   78 (125)
T 1pbj_A            2 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTI   78 (125)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             CHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCeEE
Confidence            67899998  899999999999999999999999999999 899999999999997664432  24567888876665 9


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      .+++++.++.+.|.+++...+||++++.+.|++|.
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~  113 (125)
T 1pbj_A           79 SPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISA  113 (125)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEH
Confidence            99999999999999999999999999999999985

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.72  E-value=2.2e-17  Score=130.02  Aligned_cols=171  Identities=11%  Similarity=0.093  Sum_probs=122.4

Q ss_pred             ccHHHHHHHHhcCcccCCceee-c-CceE--ecCCccccccccc-ccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            7 PSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFF-TVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .++.+|++.|.+++++++||+| + ++++  +|.+|+......+ ..+.....+...      .........++.++|.+
T Consensus        49 ~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~------~~~~v~~i~~~~~~~~~  122 (323)
T 3t4n_C           49 LLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKL------QLDGLKDIERALGVDQL  122 (323)
T ss_dssp             SBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGC------BHHHHHHHHHHTTC---
T ss_pred             CcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHH------HHHHHHHHHHHhCCCCC
Confidence            5899999999999999999999 4 4888  9999988522110 000000000000      00000001223445567


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCc-----EEEEEehHHHhhchhcc-----Ccccccccc---cccCc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWK-----LVGVVSDYDLLALDSIS-----GSMRKLGFN---LYFGF  148 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~-----~~Giit~~dl~~~~~~~-----~~~~~~~~~---~~~~~  148 (188)
                        +++++.+++++.+|++.|.+++.+++||+|+++.     ++|++|.+|+++.+...     ....++.++   |.+.+
T Consensus       123 --~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~  200 (323)
T 3t4n_C          123 --DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNM  200 (323)
T ss_dssp             ---CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTC
T ss_pred             --CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCc
Confidence              8899999999999999999999999999998775     99999999999765421     123456777   75555


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      . +.+++++.++.+.|.+++...+||++ ++.+.|++|.
T Consensus       201 ~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~  239 (323)
T 3t4n_C          201 KSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEA  239 (323)
T ss_dssp             CCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEET
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Confidence            5 99999999999999999999999997 4799999986

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.72  E-value=4.5e-17  Score=117.82  Aligned_cols=114  Identities=15%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccCc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFGF  148 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  148 (188)
                      ....+++++|+++.++.++++++++.+|++.|.+++++++||+|++ |+++|+||.+|++++..... ..++. ++.++.
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-~~~v~-~~~~~~  110 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-RVRRN-RLRDPI  110 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-SCCGG-GSBCCC
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-cchhH-hcCCCe
Confidence            4567999999864478899999999999999999999999999876 89999999999998764332 33456 666666


Q ss_pred             ccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 NSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus       111 ~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~  148 (173)
T 3ocm_A          111 IVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTP  148 (173)
T ss_dssp             EECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECH
T ss_pred             EECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeH
Confidence            699999999999999999999999997 5899999985

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=1e-16  Score=114.77  Aligned_cols=118  Identities=19%  Similarity=0.193  Sum_probs=102.7

Q ss_pred             CCCCCcccccccccC-CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc---Ccccccccc
Q 029781           68 PRNGTYTVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS---GSMRKLGFN  143 (188)
Q Consensus        68 ~~~~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---~~~~~~~~~  143 (188)
                      .....++++++|.+. .++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++++...   ....++.++
T Consensus        19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   98 (165)
T 3fhm_A           19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVA   98 (165)
T ss_dssp             CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGT
T ss_pred             HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHH
Confidence            445678999999952 2689999999999999999999999999999889999999999999876543   234567888


Q ss_pred             cccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          144 LYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       144 ~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      |.+.+. +.+++++.+++++|.+++...+||++++.+.|+||.
T Consensus        99 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~  141 (165)
T 3fhm_A           99 MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISI  141 (165)
T ss_dssp             SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence            876665 999999999999999999999999999999999985

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.71  E-value=1.3e-16  Score=111.18  Aligned_cols=111  Identities=14%  Similarity=0.065  Sum_probs=97.2

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCC--cEEEEEehHHHhhchhcc-CcccccccccccCc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW--KLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGF  148 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~--~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~  148 (188)
                      ..+++++|.+  ++.++.+++++.++++.|.+++.+.+||+|++|  +++|+||.+|++++.... ....++.++|.+.+
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~   81 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   81 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCCC
Confidence            3689999998  899999999999999999999999999999877  999999999999876433 23456788887665


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      . +.++ ++.+++++|.+++.+.+||++ ++.+.|++|.
T Consensus        82 ~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~  119 (141)
T 2rih_A           82 TVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSI  119 (141)
T ss_dssp             EEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             eEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEH
Confidence            5 8999 999999999999999999998 6899999985

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.71  E-value=1.4e-17  Score=131.51  Aligned_cols=172  Identities=12%  Similarity=-0.035  Sum_probs=123.7

Q ss_pred             cccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -.++.+|+++|.+++++++||+| + ++++  +|.+|++.......    ... .... ..............++++|.+
T Consensus        53 ~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~----~~~-~~~~-~~l~~~~~~~~~~~~~~im~~  126 (330)
T 2v8q_E           53 SLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYY----KSA-LVQI-YELEEHKIETWREVYLQDSFK  126 (330)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHH----HHH-TTTC-CCGGGCBHHHHHHHHSSSSCC
T ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHH----hcc-ccch-hHHhhccHHHHHHHHhhcccC
Confidence            46899999999999999999999 5 6788  99999884211000    000 0000 000000000001134577888


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhhchhccCcc--------cccccc--c--ccCc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSISGSM--------RKLGFN--L--YFGF  148 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~~~--------~~~~~~--~--~~~~  148 (188)
                        ++.++.+++++.++++.|.+++.+++||+|+ +|+++|++|.+|++++.......        ..+.++  +  .+..
T Consensus       127 --~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~  204 (330)
T 2v8q_E          127 --PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIA  204 (330)
T ss_dssp             --CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCC
T ss_pred             --CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCce
Confidence              8999999999999999999999999999998 79999999999999876432211        122222  2  3344


Q ss_pred             ccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 NSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.+++++.++.+.|.+++...+||++ ++.+.|++|.
T Consensus       205 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~  242 (330)
T 2v8q_E          205 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSK  242 (330)
T ss_dssp             CEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEG
T ss_pred             EECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEH
Confidence            488999999999999999999999998 6899999985

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.70  E-value=4.4e-17  Score=112.30  Aligned_cols=112  Identities=16%  Similarity=0.147  Sum_probs=97.8

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHh-hchhccC--cccccccccccCc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDSISG--SMRKLGFNLYFGF  148 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~-~~~~~~~--~~~~~~~~~~~~~  148 (188)
                      ..+++++|.+  ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++ +++....  ...++.++|.+.+
T Consensus         7 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~   84 (133)
T 1y5h_A            7 MTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSI   84 (133)
T ss_dssp             -CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCC
T ss_pred             hcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCC
Confidence            4589999998  899999999999999999999999999998889999999999998 4554332  2356788887665


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      . +.+++++.++.++|.+++.+.+||++++.+.|++|.
T Consensus        85 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~  122 (133)
T 1y5h_A           85 YYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTE  122 (133)
T ss_dssp             CCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence            5 999999999999999999999999999999999985

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.70  E-value=2.9e-16  Score=108.85  Aligned_cols=112  Identities=19%  Similarity=0.158  Sum_probs=97.3

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHh-hchhcc-CcccccccccccCc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDSIS-GSMRKLGFNLYFGF  148 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~-~~~~~~-~~~~~~~~~~~~~~  148 (188)
                      ...+++++|.+  ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|++ ++.... ....++.++|.+.+
T Consensus         5 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~   82 (138)
T 2yzi_A            5 MKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   82 (138)
T ss_dssp             TTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             hhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhCCC
Confidence            35789999998  899999999999999999999999999999889999999999997 444332 23456788897666


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      . +.+++++.++.++|.+++.+.+ |++ ++.+.|++|.
T Consensus        83 ~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~  120 (138)
T 2yzi_A           83 ITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTL  120 (138)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEH
T ss_pred             eEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEH
Confidence            5 9999999999999999999988 887 8999999985

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.70  E-value=2.8e-17  Score=116.25  Aligned_cols=114  Identities=18%  Similarity=0.265  Sum_probs=98.7

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEE-cC-CCcEEEEEehHHHhhchhccCcccccccccccCc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI-DD-DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGF  148 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVv-d~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  148 (188)
                      ...+++++|+++.++.++++++++.+|++.|.+++++++||+ |+ +|+++|+||.+|++++..... ..++.++|.+..
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-~~~v~~~m~~~~   96 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-KAKISTIMRDIV   96 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-TSBGGGTCBCCE
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-CCcHHHHhCCCe
Confidence            457899999864478899999999999999999999999999 65 489999999999998765433 456788895555


Q ss_pred             ccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          149 NSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       149 ~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .+.+++++.+++++|.+++.+.+||+++ +.+.|+||.
T Consensus        97 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~  134 (153)
T 3oco_A           97 SVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITD  134 (153)
T ss_dssp             EEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECH
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeH
Confidence            5999999999999999999999999985 899999985

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.70  E-value=1.6e-16  Score=109.50  Aligned_cols=111  Identities=18%  Similarity=0.165  Sum_probs=97.9

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-cccccccccccCcc-
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-SMRKLGFNLYFGFN-  149 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-~~~~~~~~~~~~~~-  149 (188)
                      ..+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+| +|+++|++|.+|++++..... ...++.++|.+.+. 
T Consensus         3 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~~   79 (133)
T 2ef7_A            3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLIT   79 (133)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCCC
T ss_pred             cccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCCCCEE
Confidence            4689999998  899999999999999999999999999999 899999999999997765432 24567888876555 


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+++++.++.+.|.+++...+||++ ++.+.|++|.
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~  116 (133)
T 2ef7_A           80 IREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISI  116 (133)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             ECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEH
Confidence            99999999999999999999999998 6899999985

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.70  E-value=2.3e-16  Score=112.23  Aligned_cols=113  Identities=16%  Similarity=0.122  Sum_probs=97.6

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc--Cccccccccccc-
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS--GSMRKLGFNLYF-  146 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--~~~~~~~~~~~~-  146 (188)
                      ....+++++|.+  + +++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++.....  ....++.++|.+ 
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~   90 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRM   90 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEET
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcCC
Confidence            346799999986  5 4999999999999999999999999999889999999999999865322  234568899985 


Q ss_pred             -Ccc-cCCcchHHHHHHHHhccCceEEEEEeCC----Eeeceeec
Q 029781          147 -GFN-SGNAYFARWLLKFVGGINCGFLLTVEGA----MTANIISS  185 (188)
Q Consensus       147 -~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~----~~~giit~  185 (188)
                       .+. +.+++++.+++++|.+++...+||++++    .+.|+||.
T Consensus        91 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~  135 (159)
T 3fv6_A           91 PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTK  135 (159)
T ss_dssp             TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEH
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEH
Confidence             555 9999999999999999999999999865    89999985

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.70  E-value=2.1e-16  Score=109.25  Aligned_cols=110  Identities=14%  Similarity=0.158  Sum_probs=96.6

Q ss_pred             cccccccc---cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh-chhcc--Cccccccccccc
Q 029781           73 YTVGDFMT---KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA-LDSIS--GSMRKLGFNLYF  146 (188)
Q Consensus        73 ~~v~~im~---~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~-~~~~~--~~~~~~~~~~~~  146 (188)
                      .+++++|.   +  ++.++.+++++.+|++.|.+++.+.+||+| +|+++|++|.+|+++ .....  ....++.++|.+
T Consensus         6 ~~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~   82 (135)
T 2rc3_A            6 KTVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   82 (135)
T ss_dssp             CBHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             eeHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccC
Confidence            38999999   6  899999999999999999999999999999 799999999999986 33322  234567888976


Q ss_pred             Ccc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          147 GFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       147 ~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      .+. +.+++++.+++++|.+++...+||++++.+.|++|.
T Consensus        83 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~  122 (135)
T 2rc3_A           83 QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSI  122 (135)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEH
Confidence            666 999999999999999999999999999999999985

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.70  E-value=8.8e-17  Score=111.57  Aligned_cols=103  Identities=12%  Similarity=0.047  Sum_probs=87.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||++ + |+++  +|.+|+++...                      .......+++++|.
T Consensus        20 ~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~----------------------~~~~~~~~v~~~m~   77 (136)
T 3lfr_A           20 ATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL----------------------KADGDSDDVKKLLR   77 (136)
T ss_dssp             TTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG----------------------SSSGGGCCGGGTCB
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH----------------------hccCCCcCHHHHcC
Confidence            346899999999999999999999 5 7999  99999984321                      01234568999996


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                         ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus        78 ---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           78 ---PATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             ---CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred             ---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence               4789999999999999999999999999998899999999999998764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.70  E-value=1.2e-16  Score=112.29  Aligned_cols=114  Identities=52%  Similarity=0.637  Sum_probs=97.0

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc---------------cCc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI---------------SGS  136 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~---------------~~~  136 (188)
                      ..+++++|.+..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++....               ...
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   83 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTN   83 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhc
Confidence            56899999875468899999999999999999999999999988999999999999865321               122


Q ss_pred             ccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          137 MRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       137 ~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      ..++.++|.+.+. +.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        84 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~  134 (152)
T 4gqw_A           84 GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITR  134 (152)
T ss_dssp             CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEH
T ss_pred             cccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEH
Confidence            3457888887655 99999999999999999999999998 6899999985

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.70  E-value=8.6e-17  Score=110.24  Aligned_cols=101  Identities=16%  Similarity=0.130  Sum_probs=87.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||+| + |+++  +|.+|+++...                       ......+++++|.
T Consensus        20 ~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~-----------------------~~~~~~~v~~~m~   76 (127)
T 3nqr_A           20 RNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR-----------------------SDAEAFSMDKVLR   76 (127)
T ss_dssp             TTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGS-----------------------TTCCCCCHHHHCB
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh-----------------------ccCCCCCHHHHcC
Confidence            347899999999999999999999 5 7999  99999984220                       1224568999995


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      +   +.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus        77 ~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           77 T---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             C---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             C---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            4   67999999999999999999999999999889999999999999765

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.69  E-value=7.3e-18  Score=119.99  Aligned_cols=107  Identities=16%  Similarity=0.149  Sum_probs=87.1

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+|+.+|+++|.+++++++||+| +|+++  +|.+|+++....           . .     .........++.++|.+
T Consensus        32 ~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~-----------~-~-----~~~~~~~~~~v~~im~~   94 (156)
T 3k6e_A           32 DTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQME-----------H-D-----LSQEIMADTDIVHMTKT   94 (156)
T ss_dssp             TTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHH-----------H-T-----CCHHHHTTSBGGGTCBC
T ss_pred             CcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhh-----------c-c-----cccccccccCHHHhhcC
Confidence            356899999999999999999999 79999  999998742110           0 0     00012245789999999


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++++++++.++++.|.+++  .+||+|++|+++|+||..|+++++.
T Consensus        95 --~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           95 --DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             --SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             --CceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHH
Confidence              9999999999999999998776  4999999999999999999998764

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.69  E-value=2.6e-16  Score=108.99  Aligned_cols=113  Identities=25%  Similarity=0.252  Sum_probs=97.7

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHH-hhchhcc-CcccccccccccCc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL-LALDSIS-GSMRKLGFNLYFGF  148 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl-~~~~~~~-~~~~~~~~~~~~~~  148 (188)
                      ...+++++|.+  ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+ ++++... ....++.++|.+.+
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~   83 (138)
T 2p9m_A            6 KNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDV   83 (138)
T ss_dssp             TTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCSSC
T ss_pred             ccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCCCc
Confidence            35789999998  89999999999999999999999999999988999999999999 8765432 23456788887665


Q ss_pred             c-cCCcchHHHHHHHHhccC-----ceEEEEEe-CCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGIN-----CGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~-----~~~~~vv~-~~~~~giit~  185 (188)
                      . +.+++++.++.+.|.+++     ...+||++ ++.+.|++|.
T Consensus        84 ~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~  127 (138)
T 2p9m_A           84 ITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISD  127 (138)
T ss_dssp             CCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEH
T ss_pred             EEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEH
Confidence            5 899999999999999999     99999998 7899999985

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.69  E-value=3.3e-16  Score=114.06  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=99.0

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc---cCcccccccccccCc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI---SGSMRKLGFNLYFGF  148 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~---~~~~~~~~~~~~~~~  148 (188)
                      ..+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++....   .....++.++|.+.+
T Consensus         8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~   85 (184)
T 1pvm_A            8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   85 (184)
T ss_dssp             CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence            4789999998  89999999999999999999999999999988999999999999976542   223446788898665


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      . +.+++++.+++++|.+++...+||+++ +.+.|+||.
T Consensus        86 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~  124 (184)
T 1pvm_A           86 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTL  124 (184)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEH
T ss_pred             cEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEH
Confidence            5 999999999999999999999999987 899999985

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.69  E-value=1.4e-16  Score=112.05  Aligned_cols=113  Identities=19%  Similarity=0.110  Sum_probs=96.5

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-------Ccccccccc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-------GSMRKLGFN  143 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-------~~~~~~~~~  143 (188)
                      ...+++++|.+..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++++...       ....++.++
T Consensus        13 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~   92 (150)
T 3lqn_A           13 QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQV   92 (150)
T ss_dssp             HHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGT
T ss_pred             hcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHHH
Confidence            4679999999522689999999999999999999999999999889999999999999766421       134457888


Q ss_pred             cccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          144 LYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       144 ~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      |.+.+. +.+++++.+++++|.+++.  +||++ ++.+.|+||.
T Consensus        93 m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~  134 (150)
T 3lqn_A           93 MKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTR  134 (150)
T ss_dssp             CBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEH
T ss_pred             hcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEH
Confidence            886665 9999999999999998886  78888 7899999985

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.68  E-value=2.1e-16  Score=108.67  Aligned_cols=100  Identities=12%  Similarity=0.057  Sum_probs=85.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||+| + |+++  +|.+|+++..                         .....+++++|.
T Consensus        22 ~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~-------------------------~~~~~~v~~~m~   76 (129)
T 3jtf_A           22 ISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYM-------------------------LEPALDIRSLVR   76 (129)
T ss_dssp             TTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGG-------------------------TCTTSCGGGGCB
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHh-------------------------ccCCcCHHHHhC
Confidence            346899999999999999999999 4 8999  9999998421                         113567899995


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                         ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus        77 ---~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           77 ---PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             ---CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             ---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence               4789999999999999999999999999998899999999999998653

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.68  E-value=4.2e-17  Score=111.87  Aligned_cols=104  Identities=17%  Similarity=0.121  Sum_probs=89.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-+++.+|+++|.+++++.+||+|+|+++  +|.+|+.+...                      .......+++++|.+ 
T Consensus        20 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~----------------------~~~~~~~~v~~~m~~-   76 (128)
T 3gby_A           20 LGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRK----------------------GWPTVKEKLGEELLE-   76 (128)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCS----------------------SSCCTTCBCCGGGCB-
T ss_pred             CCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHh----------------------hCCcccCcHHHHccC-
Confidence            34689999999999999999999998888  99999884211                      111223679999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                       ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.
T Consensus        77 -~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           77 -TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             -CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence             8999999999999999999999999999998899999999999998764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.67  E-value=3.2e-16  Score=111.53  Aligned_cols=114  Identities=16%  Similarity=0.178  Sum_probs=97.3

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC--CCcEEEEEehHHHhhchhccCc------ccccc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGS------MRKLG  141 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~--~~~~~Giit~~dl~~~~~~~~~------~~~~~  141 (188)
                      ....+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|+  +|+++|+||..|+++.......      ...+.
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~   87 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQ   87 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHH
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhh
Confidence            346789999998  8999999999999999999999999999996  6899999999999976643221      23466


Q ss_pred             cccccC-------cccCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          142 FNLYFG-------FNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       142 ~~~~~~-------~~~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      ++|.+.       ..+.+++++.+++++|.+++...+||++++.+.|+||.
T Consensus        88 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Giit~  138 (164)
T 2pfi_A           88 DILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSW  138 (164)
T ss_dssp             HHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEH
T ss_pred             hhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEH
Confidence            677654       34889999999999999999999999999999999985

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.67  E-value=7.7e-17  Score=110.92  Aligned_cols=101  Identities=13%  Similarity=0.153  Sum_probs=87.3

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||+| + |+++  +|.+|+++...                       ......+++++|.
T Consensus        23 ~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----------------------~~~~~~~v~~~m~   79 (130)
T 3i8n_A           23 ATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ-----------------------SGSGQKQLGAVMR   79 (130)
T ss_dssp             TTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHH-----------------------TTTTTSBHHHHSE
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHh-----------------------cCCCcCCHHHHhc
Confidence            347899999999999999999999 5 8999  99999884210                       1123568999994


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                         ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++
T Consensus        80 ---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           80 ---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             ---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             ---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence               578999999999999999999999999999889999999999999765

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.67  E-value=8.5e-16  Score=114.00  Aligned_cols=110  Identities=12%  Similarity=0.048  Sum_probs=97.4

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhc---CCCeEEEEcCCCcEEEEEehHHHhhchhccCccccccccccc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK---RITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYF  146 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~---~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~  146 (188)
                      ....+++++|++  ++.++++++++.+|++.|.++   +.+.+||+|++|+++|+||.+|++...    ...++.++|.+
T Consensus        51 ~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----~~~~v~~im~~  124 (205)
T 3kxr_A           51 YSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----PHEPLISLLSE  124 (205)
T ss_dssp             SCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----TTSBGGGGCCS
T ss_pred             CCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----CcchHHHHhcC
Confidence            346689999999  999999999999999999987   789999999999999999999998653    34567889976


Q ss_pred             Ccc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          147 GFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       147 ~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+. +.+++++.+++++|.+++...+||++ +|.+.|+||.
T Consensus       125 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~  165 (205)
T 3kxr_A          125 DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTL  165 (205)
T ss_dssp             SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEH
T ss_pred             CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEH
Confidence            555 99999999999999999999999998 5899999985

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=3.6e-16  Score=110.94  Aligned_cols=113  Identities=18%  Similarity=0.126  Sum_probs=98.7

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCe-EEEEcCCCcEEEEEehHHHhhchh---------------
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITG-FPVIDDDWKLVGVVSDYDLLALDS---------------  132 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~-~pVvd~~~~~~Giit~~dl~~~~~---------------  132 (188)
                      .....+++++|.+  ++.++.+++++.+|++.|.+++.+. +||+|++ +++|+||..|++++..               
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~   88 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRS   88 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------
T ss_pred             hhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHH
Confidence            3456799999998  8999999999999999999999999 9999977 9999999999997643               


Q ss_pred             --ccCcccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          133 --ISGSMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       133 --~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                        ......++.++|.+ +. +.+++++.+++++|.+++...+||++ ++.+.|+||.
T Consensus        89 ~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~  144 (157)
T 1o50_A           89 SMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS  144 (157)
T ss_dssp             CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             HHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEH
Confidence              11234457888888 55 99999999999999999999999998 7899999985

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.67  E-value=3e-16  Score=113.91  Aligned_cols=114  Identities=20%  Similarity=0.186  Sum_probs=98.3

Q ss_pred             CCCcccccccccCCC----eeEE--cCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEehHHHhhchhcc-------
Q 029781           70 NGTYTVGDFMTKKED----LHAV--KTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDLLALDSIS-------  134 (188)
Q Consensus        70 ~~~~~v~~im~~~~~----~~~v--~~~~~l~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dl~~~~~~~-------  134 (188)
                      ....+++++|.+  .    +.++  .+++++.+|++.|.+++.+.+||+  |++|+++|+||..|++++....       
T Consensus         8 ~~~~~v~dim~~--~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~   85 (185)
T 2j9l_A            8 AHKTLAMDVMKP--RRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGV   85 (185)
T ss_dssp             -CCCBHHHHSBS--CTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCC
T ss_pred             hccCcHHHHhcc--cccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCc
Confidence            346799999998  5    7788  999999999999999999999999  7789999999999999765421       


Q ss_pred             -------------------CcccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          135 -------------------GSMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       135 -------------------~~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                                         ....++.++|.+.+. +.+++++.++.++|.+++.+.+||++++.+.|+||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~  156 (185)
T 2j9l_A           86 VSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITK  156 (185)
T ss_dssp             CTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             cccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEH
Confidence                               223457888876555 999999999999999999999999999999999985

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.66  E-value=2.3e-16  Score=113.95  Aligned_cols=114  Identities=44%  Similarity=0.603  Sum_probs=96.9

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc------------------
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI------------------  133 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~------------------  133 (188)
                      .++++++|.+..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|++++...                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            46889999874458899999999999999999999999999988999999999999864311                  


Q ss_pred             -----------cCcccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          134 -----------SGSMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       134 -----------~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                                 .....++.++|.+.+. +.+++++.+++++|.+++...+||++ ++.+.|+||.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~  147 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTR  147 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEH
Confidence                       1223457888887655 99999999999999999999999998 6899999985

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.66  E-value=3.5e-16  Score=123.66  Aligned_cols=166  Identities=16%  Similarity=0.117  Sum_probs=122.8

Q ss_pred             cccHHHHHHHHhcCcccCCceee-c-CceE--ecCCccccccccccc-chhhhhhhccCCCCCCCCCCCCCCcc---c--
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTV-SREVKAFAHNGVGITNSVPPRNGTYT---V--   75 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---v--   75 (188)
                      -.++.+|++.|.+++++++||+| + ++++  +|.+|++........ ......+            ......+   +  
T Consensus        40 ~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~  107 (334)
T 2qrd_G           40 TLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAI------------AEIDKFRLLGLRE  107 (334)
T ss_dssp             TSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGG------------GGGGSCBHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHH------------HHHhhhchhhHHH
Confidence            46899999999999999999999 4 7898  999998842210000 0000000            0000122   2  


Q ss_pred             --ccccccCCCe--eEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCc-----EEEEEehHHHhhchhccC-----cccccc
Q 029781           76 --GDFMTKKEDL--HAVKTTTTVDEALERLVEKRITGFPVIDDDWK-----LVGVVSDYDLLALDSISG-----SMRKLG  141 (188)
Q Consensus        76 --~~im~~~~~~--~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~-----~~Giit~~dl~~~~~~~~-----~~~~~~  141 (188)
                        +++|.+  ++  .++.+++++.++++.|.+++.+++||+|++|.     ++|++|.+|+++......     ...++.
T Consensus       108 ~l~~im~~--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~  185 (334)
T 2qrd_G          108 VERKIGAI--PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLN  185 (334)
T ss_dssp             HHHHHTCS--CSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGG
T ss_pred             HHHhhccC--CCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHH
Confidence              334666  55  89999999999999999999999999987654     999999999997664321     123456


Q ss_pred             c---ccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          142 F---NLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       142 ~---~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +   +|.+.+. +.+++++.++.+.|.+++...+||++ ++.+.|++|.
T Consensus       186 ~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~  234 (334)
T 2qrd_G          186 QMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYES  234 (334)
T ss_dssp             GSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEET
T ss_pred             HhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEH
Confidence            6   4665555 99999999999999999999999998 5799999985

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.66  E-value=1e-16  Score=110.49  Aligned_cols=104  Identities=11%  Similarity=0.011  Sum_probs=87.3

Q ss_pred             ccccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||++  +|+++  +|.+|+++....                     .......+++++| 
T Consensus        19 ~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~---------------------~~~~~~~~v~~~m-   76 (130)
T 3hf7_A           19 INDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---------------------KKEFTKEIMLRAA-   76 (130)
T ss_dssp             TTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTS---------------------SSCCCHHHHHHHS-
T ss_pred             CCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhc---------------------cCccchhhHHHhc-
Confidence            346899999999999999999996  47899  999998842110                     0112345789999 


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus        77 ~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           77 D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence            4  6889999999999999999999999999998899999999999998763

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.66  E-value=2e-16  Score=114.09  Aligned_cols=100  Identities=16%  Similarity=0.059  Sum_probs=88.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -.++.+|+++|.+++++++||+| + ++++  +|.+|+++...                        .....+++++| +
T Consensus        60 ~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~------------------------~~~~~~v~~im-~  114 (172)
T 3lhh_A           60 NLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI------------------------AGERLELVDLV-K  114 (172)
T ss_dssp             TSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH------------------------TTCCCCGGGGC-B
T ss_pred             CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh------------------------hcCcccHHHHh-c
Confidence            46899999999999999999999 5 8999  99999884210                        11256899999 6


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.
T Consensus       115 --~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~  163 (172)
T 3lhh_A          115 --NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALT  163 (172)
T ss_dssp             --CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             --CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHh
Confidence              8999999999999999999999999999998899999999999998764

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.66  E-value=1.5e-16  Score=107.98  Aligned_cols=101  Identities=26%  Similarity=0.360  Sum_probs=88.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++.+||+| +|+++  +|.+|+.+...                         ....++.++|.+
T Consensus        16 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~-------------------------~~~~~v~~~~~~   70 (122)
T 3kpb_A           16 SNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA-------------------------QNKKTIEEIMTR   70 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH-------------------------TTCCBGGGTSBS
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH-------------------------hcccCHHHHhcC
Confidence            346899999999999999999999 89999  99999884210                         112389999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.
T Consensus        71 --~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           71 --NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             --SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             --CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence              8999999999999999999999999999998899999999999998764

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.65  E-value=1.4e-16  Score=111.90  Aligned_cols=101  Identities=17%  Similarity=0.162  Sum_probs=87.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||+| + |+++  +|.+|+++...                        .....+++++| 
T Consensus        40 ~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~------------------------~~~~~~v~~~m-   94 (148)
T 3lv9_A           40 ESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI------------------------NENKIELEEIL-   94 (148)
T ss_dssp             TTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH------------------------HHSCCCGGGTC-
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh------------------------cCCCccHHHhc-
Confidence            346899999999999999999999 5 8999  99999884210                        00156899999 


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus        95 ~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           95 R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            6  7899999999999999999999999999998899999999999998663

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.65  E-value=9.1e-16  Score=108.71  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=97.2

Q ss_pred             cccccccccC----CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---cccccccccc
Q 029781           73 YTVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLY  145 (188)
Q Consensus        73 ~~v~~im~~~----~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~  145 (188)
                      .+++++|.+.    .++.++.+++++.+|++.|.+++++.+||.+ +|+++|+||.+|+++++....   ...++.++|.
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   85 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIMT   85 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcC
Confidence            5799999952    2569999999999999999999999999966 799999999999997664432   3456788887


Q ss_pred             cCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          146 FGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       146 ~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +.+. +.+++++.+++++|.+++...+||++++.+.|++|.
T Consensus        86 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~  126 (157)
T 4fry_A           86 AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISI  126 (157)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             CCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence            7666 999999999999999999999999999999999985

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.65  E-value=9.1e-16  Score=108.58  Aligned_cols=114  Identities=16%  Similarity=0.086  Sum_probs=95.4

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-------Cccccccc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-------GSMRKLGF  142 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-------~~~~~~~~  142 (188)
                      ....+++++|.+..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|++++....       ....++.+
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~   87 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE   87 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH
Confidence            34678999998533678999999999999999999999999999889999999999999765431       13445788


Q ss_pred             ccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          143 NLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       143 ~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +|.+.+. +.+++++.+++++|.+++.  +||++ ++.+.|+||.
T Consensus        88 ~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~  130 (157)
T 2emq_A           88 VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTR  130 (157)
T ss_dssp             TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEH
T ss_pred             HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEH
Confidence            8876665 9999999999999998887  78887 5899999985

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.64  E-value=4.6e-16  Score=109.24  Aligned_cols=119  Identities=20%  Similarity=0.211  Sum_probs=90.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++.+||+| +|+++  +|.+|+++.............+.        .........++.++|.+
T Consensus        22 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~m~~   93 (152)
T 4gqw_A           22 PTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQ--------KLLSKTNGKLVGDLMTP   93 (152)
T ss_dssp             TTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHH--------TC-----CCBHHHHSEE
T ss_pred             CCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHH--------HHHHHhccccHHHhcCC
Confidence            346899999999999999999999 78999  99999985321100000000000        00122345789999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++++..
T Consensus        94 --~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           94 --APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             --SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             --CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence              89999999999999999999999999999988999999999999987643

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.64  E-value=4e-16  Score=108.62  Aligned_cols=102  Identities=16%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cC--ceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LP--ITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~--~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      -.++.+|+++|.+++++.+||+| ++  +++  +|.+|+++...                      .......++.++|.
T Consensus        21 ~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~----------------------~~~~~~~~v~~~m~   78 (141)
T 2rih_A           21 TATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVA----------------------QRLDLDGPAMPIAN   78 (141)
T ss_dssp             TCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHH----------------------TTCCTTSBSGGGCB
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHh----------------------cCCCCCCCHHHHcC
Confidence            46899999999999999999999 66  888  99999874210                      01123568999999


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  ++.++.++ ++.++++.|.+++.+.+||+|++|+++|+||..|++++..
T Consensus        79 ~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           79 S--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             C--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             C--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence            8  89999999 9999999999999999999998899999999999997653

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.64  E-value=3.3e-16  Score=107.89  Aligned_cols=103  Identities=21%  Similarity=0.242  Sum_probs=88.9

Q ss_pred             cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      -.++.+|+++|.+++++.+||+|+|+++  +|.+|+.+...                      .......++.++|.+  
T Consensus        20 ~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~----------------------~~~~~~~~v~~~~~~--   75 (133)
T 2ef7_A           20 DAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIG----------------------KGKSLETKAEEFMTA--   75 (133)
T ss_dssp             TCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH----------------------TTCCTTCBGGGTSEE--
T ss_pred             CCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHh----------------------cCCCcccCHHHHcCC--
Confidence            4689999999999999999999988888  99999873210                      011234689999998  


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            8999999999999999999999999999998899999999999998764

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.64  E-value=9.1e-16  Score=108.99  Aligned_cols=114  Identities=15%  Similarity=0.090  Sum_probs=96.6

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-------Cccccccc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-------GSMRKLGF  142 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-------~~~~~~~~  142 (188)
                      ....+++++|.+..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.....       ....++.+
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~   90 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   90 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH
Confidence            34679999997644588999999999999999999999999999889999999999999876442       23455788


Q ss_pred             ccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          143 NLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       143 ~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +|.+.+. +.+++++.+++++|.+++.  +||++ ++.+.|+||.
T Consensus        91 ~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~  133 (159)
T 1yav_A           91 VMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTR  133 (159)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEH
T ss_pred             hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEH
Confidence            8876655 9999999999999998876  78888 6899999985

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.63  E-value=1.9e-15  Score=105.19  Aligned_cols=112  Identities=17%  Similarity=0.267  Sum_probs=94.6

Q ss_pred             Cccccc---ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc---Ccccccccccc
Q 029781           72 TYTVGD---FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS---GSMRKLGFNLY  145 (188)
Q Consensus        72 ~~~v~~---im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---~~~~~~~~~~~  145 (188)
                      ..++++   +|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|++++....   ....++.++|.
T Consensus         7 ~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   84 (144)
T 2nyc_A            7 KIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM   84 (144)
T ss_dssp             GSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred             hcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHh
Confidence            346666   8877  899999999999999999999999999999889999999999999866532   12345677775


Q ss_pred             c-------CcccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          146 F-------GFNSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       146 ~-------~~~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +       ...+.+++++.+++++|.+++...+||++ ++.+.|+||.
T Consensus        85 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~  132 (144)
T 2nyc_A           85 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTL  132 (144)
T ss_dssp             HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             cCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEH
Confidence            4       34499999999999999999999999998 5899999985

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.62  E-value=4.8e-16  Score=112.26  Aligned_cols=126  Identities=18%  Similarity=0.226  Sum_probs=90.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccc-cchhhhhhhccCCCCC-----CCCCCCCCCccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFT-VSREVKAFAHNGVGIT-----NSVPPRNGTYTV   75 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v   75 (188)
                      .-.++.+|+++|.+++++++||+| +|+++  +|.+|+++...... .......+........     ..........++
T Consensus        21 ~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  100 (180)
T 3sl7_A           21 PSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVV  100 (180)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCSHHHHHHHHHTTTTCBH
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHHHHHHHhccccccH
Confidence            447899999999999999999999 88999  99999984210000 0000000000000000     000012235689


Q ss_pred             ccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           76 GDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        76 ~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      .++|.+  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.
T Consensus       101 ~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A          101 GDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             HHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            999998  8999999999999999999999999999998899999999999998764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.62  E-value=4.4e-16  Score=105.96  Aligned_cols=104  Identities=20%  Similarity=0.210  Sum_probs=88.8

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.+|+++|.+++++.+||+|+|+++  +|.+|+.+....                     .......++.++|.+ 
T Consensus        16 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~---------------------~~~~~~~~v~~~m~~-   73 (125)
T 1pbj_A           16 ITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAE---------------------GDDLAEVKVWEVMER-   73 (125)
T ss_dssp             TTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHH---------------------TCCTTTSBHHHHCBC-
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhc---------------------CCcccccCHHHHcCC-
Confidence            34689999999999999999999988888  999998732100                     012235689999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                       ++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|..|+++++.
T Consensus        74 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           74 -DLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             -GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred             -CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence             8999999999999999999999999999997 99999999999998764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.62  E-value=7.4e-16  Score=108.30  Aligned_cols=109  Identities=13%  Similarity=0.109  Sum_probs=89.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++++||+| +|+++  +|.+|+++.......                .........++.++|.+
T Consensus        32 ~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~----------------~~~~~~~~~~v~~~m~~   95 (150)
T 3lqn_A           32 IGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLER----------------IEFERLEEMKVEQVMKQ   95 (150)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSS----------------BCGGGGGGCBGGGTCBS
T ss_pred             CCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcc----------------cchhHHhcCCHHHHhcC
Confidence            346899999999999999999999 89999  999999843211000                00012346789999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                        ++.++.+++++.++++.|.+++.  +||+|++|+++|+||..|+++++..
T Consensus        96 --~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           96 --DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             --SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             --CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence              89999999999999999999886  9999988999999999999987643

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.62  E-value=4.6e-15  Score=110.58  Aligned_cols=109  Identities=21%  Similarity=0.159  Sum_probs=96.8

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-  149 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-  149 (188)
                      ...+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++...    ..++.++|.+.+. 
T Consensus        11 ~~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----~~~v~~im~~~~~~   84 (213)
T 1vr9_A           11 HHMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----DSSVFNKVSLPDFF   84 (213)
T ss_dssp             --CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----TSBSGGGCBCTTCC
T ss_pred             cccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----CCcHHHHccCCCEE
Confidence            34578999999  9999999999999999999999999999998899999999999987653    3457888987665 


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +.+++++.++.++|.+++...+||+++ +.+.|++|.
T Consensus        85 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~  121 (213)
T 1vr9_A           85 VHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSL  121 (213)
T ss_dssp             EETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEH
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEH
Confidence            999999999999999999999999986 899999985

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.62  E-value=1.3e-15  Score=108.15  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||+| + ++++  +|.+|+++...                       .. ...+++++|.
T Consensus        55 ~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~-----------------------~~-~~~~v~~im~  110 (156)
T 3oi8_A           55 ENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF-----------------------NP-EQFHLKSILR  110 (156)
T ss_dssp             TTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS-----------------------CG-GGCCHHHHCB
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH-----------------------cC-CcccHHHHcC
Confidence            457899999999999999999999 5 4899  99999984210                       11 4568999996


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL  128 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~  128 (188)
                         ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++
T Consensus       111 ---~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          111 ---PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             ---CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             ---CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence               478999999999999999999999999999889999999999986

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.62  E-value=1.6e-15  Score=112.51  Aligned_cols=100  Identities=19%  Similarity=0.156  Sum_probs=88.8

Q ss_pred             ccccHHHHHHHHhcC---cccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            5 SIPSCLTLARLNANG---VINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~---~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      .-.|+.+|++.|.++   ++..+||+| +|+++  +|.+|++.                           .....+++++
T Consensus        69 ~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~---------------------------~~~~~~v~~i  121 (205)
T 3kxr_A           69 DKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFK---------------------------HEPHEPLISL  121 (205)
T ss_dssp             TTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTT---------------------------SCTTSBGGGG
T ss_pred             CCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHh---------------------------CCCcchHHHH
Confidence            346899999999987   789999999 89999  99999872                           1235689999


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      |.+  ++.++++++++.++++.|.+++...+||+|++|+++|+||..|++..+..
T Consensus       122 m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          122 LSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             CCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             hcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            998  89999999999999999999999999999999999999999999987643

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.62  E-value=6.2e-16  Score=106.82  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=88.8

Q ss_pred             cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      -.++.+|+++|.+++++++||+|+|+++  +|.+|+++....                    ........++.++|.+  
T Consensus        25 ~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~--------------------~~~~~~~~~v~~~m~~--   82 (135)
T 2rc3_A           25 DDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYL--------------------LDKPVKDTQVKEIMTR--   82 (135)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGG--------------------SSSCGGGSBGGGTSBC--
T ss_pred             CCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHH--------------------cCCCcccCCHHHhccC--
Confidence            4689999999999999999999988888  999998731100                    0012346789999998  


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ++.++.+++++.++++.|.+++.+.+||+| +|+++|+||..|+++++.
T Consensus        83 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           83 QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence            899999999999999999999999999999 799999999999998764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.61  E-value=3.5e-16  Score=110.59  Aligned_cols=101  Identities=16%  Similarity=0.171  Sum_probs=87.6

Q ss_pred             ccccHHHHHHHHhcCcccCCcee-e--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHL-Q--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVv-d--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      .-.++.+|+++|.+++++++||+ +  +|+++  +|.+|+++...                        .....+++++|
T Consensus        37 ~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~------------------------~~~~~~v~~~m   92 (153)
T 3oco_A           37 VDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR------------------------IDDKAKISTIM   92 (153)
T ss_dssp             TTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH------------------------HHTTSBGGGTC
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh------------------------cCCCCcHHHHh
Confidence            34689999999999999999999 5  48898  99999884210                        01156899999


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                       +  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus        93 -~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           93 -R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELF  142 (153)
T ss_dssp             -B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHH
T ss_pred             -C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHh
Confidence             6  8999999999999999999999999999998899999999999998764

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.61  E-value=6.8e-16  Score=108.55  Aligned_cols=102  Identities=20%  Similarity=0.123  Sum_probs=87.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+++.+|+++|.+++++.+||+| +|+++  +|.+|+.+....                     .......++.++|.+
T Consensus        45 ~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~---------------------~~~~~~~~v~~~m~~  103 (149)
T 3k2v_A           45 LQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT---------------------GVDMRDASIADVMTR  103 (149)
T ss_dssp             TTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS---------------------SSCCTTCBHHHHSEE
T ss_pred             CCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc---------------------CCCcccCcHHHHcCC
Confidence            346899999999999999999999 88999  999998842110                     112346789999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|++ +++|+||..|++++
T Consensus       104 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~a  149 (149)
T 3k2v_A          104 --GGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLRA  149 (149)
T ss_dssp             --SCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTCC
T ss_pred             --CCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhcC
Confidence              89999999999999999999999999999965 99999999999863

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.61  E-value=6e-16  Score=110.07  Aligned_cols=107  Identities=16%  Similarity=0.139  Sum_probs=90.5

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|+++|.+++++.+||+| +|+++  +|.+|+++...                     ........++.++|.+.
T Consensus        32 ~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~---------------------~~~~~~~~~v~~~m~~~   90 (159)
T 3fv6_A           32 NVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI---------------------GQQELTSVPVHIIMTRM   90 (159)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT---------------------SCSCTTTCBGGGTSEET
T ss_pred             CCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh---------------------ccCcccCcCHHHHHcCC
Confidence            46899999999999999999999 89999  99999884210                     01233467899999864


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCC---cEEEEEehHHHhhchhc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW---KLVGVVSDYDLLALDSI  133 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~---~~~Giit~~dl~~~~~~  133 (188)
                      .++.++.+++++.++++.|.+++.+.+||+|++|   +++|+||..|+++++..
T Consensus        91 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           91 PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence            3578999999999999999999999999999877   99999999999987643

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.61  E-value=3.5e-15  Score=113.28  Aligned_cols=112  Identities=11%  Similarity=0.113  Sum_probs=95.2

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc---------------
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS---------------  136 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~---------------  136 (188)
                      ..+++++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|++++......               
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~   83 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL   83 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence            5689999998  89999999999999999999999999999988999999999999976532110               


Q ss_pred             --------------------------------------------------------------------------------
Q 029781          137 --------------------------------------------------------------------------------  136 (188)
Q Consensus       137 --------------------------------------------------------------------------------  136 (188)
                                                                                                      
T Consensus        84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~  163 (245)
T 3l2b_A           84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKN  163 (245)
T ss_dssp             HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHc
Confidence                                                                                            


Q ss_pred             --------------------ccccccccc-cCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          137 --------------------MRKLGFNLY-FGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       137 --------------------~~~~~~~~~-~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                                          ..++.++|. ..+. +.+++++.++.++|.++++..+||++ ++.+.|++|.
T Consensus       164 ~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~  235 (245)
T 3l2b_A          164 NITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIAR  235 (245)
T ss_dssp             TCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEC
T ss_pred             CCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEH
Confidence                                123456676 4444 88899999999999999999999997 5899999985

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.61  E-value=7.3e-16  Score=106.73  Aligned_cols=103  Identities=25%  Similarity=0.345  Sum_probs=88.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcc-cccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHL-SKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      -.++.+|.++|.+++++.+||+| +|+++  +|.+|+ .+...                      .......++.++|.+
T Consensus        24 ~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~----------------------~~~~~~~~v~~~m~~   81 (138)
T 2p9m_A           24 HEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR----------------------DKYTLETTIGDVMTK   81 (138)
T ss_dssp             TSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT----------------------TCCCSSCBHHHHSCS
T ss_pred             CCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh----------------------hcccCCcCHHHHhCC
Confidence            45899999999999999999999 88999  999998 63210                      122345689999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcC-----CCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKR-----ITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~-----~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++.+++++.++++.|.+++     .+.+||+|++|+++|+||..|+++++.
T Consensus        82 --~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           82 --DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             --SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             --CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence              8999999999999999999999     999999998899999999999997653

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.61  E-value=9.9e-16  Score=105.46  Aligned_cols=104  Identities=19%  Similarity=0.226  Sum_probs=88.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccc-cccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSK-RLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++.+||+| +|+++  +|.+|+++ ....                     .......+++++|.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~---------------------~~~~~~~~v~~~m~   81 (133)
T 1y5h_A           23 EHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA---------------------GLDPNTATAGELAR   81 (133)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG---------------------TCCTTTSBHHHHHT
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc---------------------CCCccccCHHHHhc
Confidence            346899999999999999999998 88999  99999872 1100                     01223578999999


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+++++.
T Consensus        82 ~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           82 D--SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             T--CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC
T ss_pred             C--CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            8  8999999999999999999999999999997 89999999999998653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.60  E-value=1.6e-15  Score=105.06  Aligned_cols=104  Identities=25%  Similarity=0.295  Sum_probs=88.8

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|+++|.+++++++||+| +|+++  +|.+|+++....                     .......++.++|.+ 
T Consensus        23 ~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~---------------------~~~~~~~~v~~~m~~-   80 (138)
T 2yzi_A           23 STSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV---------------------PGLPYDIPVERIMTR-   80 (138)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT---------------------TCCCTTSBGGGTCBC-
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh---------------------cCCcccCCHHHHhhC-
Confidence            46899999999999999999999 89999  999998621100                     011345789999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                       ++.++.+++++.++++.|.+++.+++ |+|++|+++|+||..|+++++..
T Consensus        81 -~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           81 -NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             -SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred             -CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence             89999999999999999999999999 99988999999999999987653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.60  E-value=2e-15  Score=109.87  Aligned_cols=105  Identities=18%  Similarity=0.172  Sum_probs=89.8

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -+++.+|+++|.+++++++||+| +|+++  +|.+|+++....                    ........+++++|.+ 
T Consensus        25 ~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~--------------------~~~~~~~~~v~~im~~-   83 (184)
T 1pvm_A           25 NTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP--------------------RNKKPDEVPIRLVMRK-   83 (184)
T ss_dssp             TCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGG--------------------GCCCGGGSBGGGTSBS-
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh--------------------cccCcccCCHHHHhCC-
Confidence            35799999999999999999999 78999  999998842110                    0112345689999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                       ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.
T Consensus        84 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           84 -PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             -SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             -CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence             8999999999999999999999999999998899999999999998664

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=1.2e-15  Score=109.22  Aligned_cols=106  Identities=20%  Similarity=0.118  Sum_probs=89.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++.+||+| +|+++  +|.+|+++....            .        .......++.++|.+
T Consensus        42 ~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~------------~--------~~~~~~~~v~~~m~~  101 (165)
T 3fhm_A           42 PDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG------------Q--------GAASLQQSVSVAMTK  101 (165)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH------------H--------GGGGGTSBGGGTSBS
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHh------------c--------CCccccCCHHHHhcC
Confidence            346899999999999999999999 88999  999998742110            0        012335689999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+++++..
T Consensus       102 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A          102 --NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             --SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             --CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence              8999999999999999999999999999998 999999999999987643

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.60  E-value=1e-14  Score=111.26  Aligned_cols=115  Identities=13%  Similarity=0.121  Sum_probs=95.4

Q ss_pred             CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC--CcEEEEEehHHHhhchhcc-----C------
Q 029781           69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLALDSIS-----G------  135 (188)
Q Consensus        69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~--~~~~Giit~~dl~~~~~~~-----~------  135 (188)
                      ....++++|+|++  +++++.+++++.+|.++|.+++++.+||+|++  ++++|+||+.||++++...     .      
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~   86 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA   86 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence            3446799999999  99999999999999999999999999999864  6899999999998654211     0      


Q ss_pred             --------------------------------------------------------------------------------
Q 029781          136 --------------------------------------------------------------------------------  135 (188)
Q Consensus       136 --------------------------------------------------------------------------------  135 (188)
                                                                                                      
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
T 2d4z_A           87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR  166 (250)
T ss_dssp             CBCCC---------------------------------------------------------------------------
T ss_pred             cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence                                                                                            


Q ss_pred             -----------------ccccc--c-cccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          136 -----------------SMRKL--G-FNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       136 -----------------~~~~~--~-~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                                       ...++  . .+|.+.++ +.+++++.++..+|...+.++++|++.|.+.||||.
T Consensus       167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTr  237 (250)
T 2d4z_A          167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVAL  237 (250)
T ss_dssp             CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEH
Confidence                             00011  1 24666666 899999999999999999999999999999999985

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.59  E-value=5.6e-15  Score=114.91  Aligned_cols=110  Identities=19%  Similarity=0.118  Sum_probs=97.7

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhc-----CCCeEEEEcCCCcEEEEEehHHHhhchhccCccccccccc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNL  144 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~  144 (188)
                      ....+++++|++  +++++++++++.++++.|.++     +++.+||+|++|+++|+||.+|++...    ...++.++|
T Consensus       134 ~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----~~~~v~~im  207 (286)
T 2oux_A          134 YEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----DDTLIADIL  207 (286)
T ss_dssp             SCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----TTSBHHHHS
T ss_pred             CChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----CCCcHHHHc
Confidence            456799999998  999999999999999999987     788899999889999999999998753    345578888


Q ss_pred             ccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          145 YFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       145 ~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.+. +.+++++.++.++|.+++...+||++ +|.+.|+||.
T Consensus       208 ~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~  250 (286)
T 2oux_A          208 NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTV  250 (286)
T ss_dssp             BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEH
T ss_pred             CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEH
Confidence            76555 99999999999999999999999998 5899999985

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.59  E-value=1.3e-15  Score=107.96  Aligned_cols=107  Identities=20%  Similarity=0.239  Sum_probs=90.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.+|+++|.+++++.+||.++|+++  +|.+|+++....                    ........+++++|.+ 
T Consensus        28 ~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~--------------------~~~~~~~~~v~~~m~~-   86 (157)
T 4fry_A           28 KNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVL--------------------QERSSKATRVEEIMTA-   86 (157)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGG--------------------GTCCSSSCBHHHHSBS-
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHh--------------------ccCCccccCHHHHcCC-
Confidence            34789999999999999999997789999  999998842210                    0112346789999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS  134 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~  134 (188)
                       ++.++.+++++.++++.|.+++.+.+||+| +|+++|+||..|+++++...
T Consensus        87 -~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           87 -KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             -SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             -CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence             899999999999999999999999999999 79999999999999877543

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.59  E-value=1.5e-14  Score=111.92  Aligned_cols=109  Identities=21%  Similarity=0.208  Sum_probs=96.6

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhc-----CCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLY  145 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~  145 (188)
                      ...+++++|++  ++.++.+++++.++++.|.++     +++.+||+|++|+++|+||.+|++...    ...++.++|.
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----~~~~v~~im~  206 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----PRTRVAEIMN  206 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----TTCBSTTTSB
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----CCCcHHHHhC
Confidence            45689999999  999999999999999999987     789999999889999999999998652    3456788996


Q ss_pred             cCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          146 FGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       146 ~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+. +.+++++.+++++|.+++...+||++ +|.+.|+||.
T Consensus       207 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~  248 (278)
T 2yvy_A          207 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTV  248 (278)
T ss_dssp             SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEH
Confidence            5555 99999999999999999999999998 5899999984

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.58  E-value=2e-15  Score=107.46  Aligned_cols=112  Identities=15%  Similarity=0.163  Sum_probs=88.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++.+||+| +|+++  +|.+|+++....        .+....     .........++.++|.+
T Consensus        20 ~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~--------~~~~~~-----~~~~~~~~~~v~~im~~   86 (160)
T 2o16_A           20 RTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES--------SLQRSA-----QGDSLAFETPLFEVMHT   86 (160)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH--------HCC--------------CCCBHHHHSCS
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH--------hhcccc-----cccchhcccCHHHHhcC
Confidence            346899999999999999999999 88999  999998742110        000000     00012346789999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+++++.
T Consensus        87 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           87 --DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             --CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             --CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence              8999999999999999999999999999997 99999999999998653

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.56  E-value=5.9e-15  Score=104.35  Aligned_cols=109  Identities=12%  Similarity=0.064  Sum_probs=88.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++.+||+| +|+++  +|.+|+++......      .          .........++.++|.+
T Consensus        28 ~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~------~----------~~~~~~~~~~v~~~m~~   91 (157)
T 2emq_A           28 PGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLE------R----------IEFERLETMKVEEVMNR   91 (157)
T ss_dssp             TTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSS------S----------BCGGGGGTCBGGGTCBC
T ss_pred             CCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhccc------c----------cchHHhcCCcHHHHhCC
Confidence            346899999999999999999999 88999  99999874221100      0          00012235689999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                        ++.++.+++++.++++.|.+++.  +||+|++|+++|+||..|+++++..
T Consensus        92 --~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           92 --NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             --CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             --CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence              89999999999999999999987  9999988999999999999987653

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.56  E-value=2.6e-15  Score=108.51  Aligned_cols=100  Identities=15%  Similarity=0.091  Sum_probs=84.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      .-.++.+|+++|.+++++++||++ + |+++  +|.+|+++...                        .....++. +| 
T Consensus        53 ~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~------------------------~~~~~~v~-~~-  106 (173)
T 3ocm_A           53 IDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI------------------------TEGRVRRN-RL-  106 (173)
T ss_dssp             TTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH------------------------HHSSCCGG-GS-
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh------------------------cCCcchhH-hc-
Confidence            346899999999999999999998 5 7999  99999884210                        00134566 44 


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus       107 ~--~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~  156 (173)
T 3ocm_A          107 R--DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIA  156 (173)
T ss_dssp             B--CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHH
T ss_pred             C--CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHh
Confidence            5  6889999999999999999999999999998899999999999998764

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.55  E-value=3e-15  Score=104.20  Aligned_cols=108  Identities=16%  Similarity=0.247  Sum_probs=86.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++.+||+| +|+++  +|.+|+.+....                    ........++.++|.+
T Consensus        26 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~--------------------~~~~~~~~~v~~~m~~   85 (144)
T 2nyc_A           26 MTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG--------------------GIYNDLSLSVGEALMR   85 (144)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT--------------------C----CCSBHHHHHHH
T ss_pred             CCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc--------------------cccccCCccHHHHHhc
Confidence            346899999999999999999999 88999  999998742100                    0011235689999975


Q ss_pred             CC----CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KE----DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~----~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ..    ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.
T Consensus        86 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           86 RSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             CC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            21    4789999999999999999999999999998899999999999998764

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.55  E-value=3.5e-15  Score=105.95  Aligned_cols=108  Identities=9%  Similarity=0.023  Sum_probs=87.8

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+++.+|+++|.+++++.+||+| +|+++  +|.+|+++......             .   .........++.++|.+
T Consensus        31 ~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~-------------~---~~~~~~~~~~v~~~m~~   94 (159)
T 1yav_A           31 VGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLE-------------R---IEFEKLDQITVEEVMLT   94 (159)
T ss_dssp             TTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSS-------------S---BCGGGTTTSBHHHHSBC
T ss_pred             CCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhc-------------c---cchhhhccCCHHHhcCC
Confidence            346899999999999999999999 78999  99999884221000             0   00011345789999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++.+++++.++++.|.++++  +||+|++|+++|+||..|+++++.
T Consensus        95 --~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           95 --DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             --SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             --CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHH
Confidence              89999999999999999998876  999998899999999999998764

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.55  E-value=7.1e-15  Score=125.59  Aligned_cols=115  Identities=15%  Similarity=0.036  Sum_probs=98.0

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHH-hcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc-------------
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLV-EKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS-------------  136 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-------------  136 (188)
                      ...+++|+|++++++.++++++++.|+.+.|. +++++.+||+|++++++|+||.+|+++.......             
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            57899999994448999999999999999999 7999999999988999999999999976543210             


Q ss_pred             ------------------------------------ccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEe
Q 029781          137 ------------------------------------MRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMT  179 (188)
Q Consensus       137 ------------------------------------~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~  179 (188)
                                                          ..++.++|.+.+. +++++++.++.++|.+++.+.+||++++.+
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G~l  610 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKL  610 (632)
T ss_dssp             ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEETTEE
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEECCEE
Confidence                                                0014567876666 999999999999999999999999999999


Q ss_pred             eceeec
Q 029781          180 ANIISS  185 (188)
Q Consensus       180 ~giit~  185 (188)
                      .|+||.
T Consensus       611 vGIVT~  616 (632)
T 3org_A          611 VGIVER  616 (632)
T ss_dssp             EEEEEG
T ss_pred             EEEEeh
Confidence            999986

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.53  E-value=6.9e-15  Score=111.68  Aligned_cols=58  Identities=31%  Similarity=0.539  Sum_probs=49.3

Q ss_pred             Ccccccccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           72 TYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        72 ~~~v~~im~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      ..+++++|+ +  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|++++.
T Consensus       184 ~~~v~~im~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          184 SLPVDYVMTKD--NLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             GSBHHHHSBCT--TCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             CCceeeEecCC--ccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            467999999 6  899999999999999999999999999999889999999999998764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.52  E-value=1.2e-14  Score=105.48  Aligned_cols=123  Identities=12%  Similarity=0.129  Sum_probs=90.9

Q ss_pred             ccccHHHHHHHHhcCcccCCcee--e-cCceE--ecCCcccccccccc-----c-chhhhhhhccCCCCCCCCCCCCCCc
Q 029781            5 SIPSCLTLARLNANGVINSVPHL--Q-LPITV--ATPSHLSKRLRFFT-----V-SREVKAFAHNGVGITNSVPPRNGTY   73 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVv--d-~~~l~--vt~~dl~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~   73 (188)
                      .-.++.+|+++|.+++++++||+  | +|+++  +|.+|+++......     . ......+.... .  ..........
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~  108 (185)
T 2j9l_A           32 DSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHS-P--PLPPYTPPTL  108 (185)
T ss_dssp             SCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSC-C--CCCTTCCCCE
T ss_pred             CCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccccceeecccCC-c--ccccccccCc
Confidence            34689999999999999999999  6 88999  99999884321000     0 00000000000 0  0000123457


Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      ++.++|.+  ++.++.+++++.++++.|.+++.+.+||+| +|+++|+||..|+++++..
T Consensus       109 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A          109 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             ECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             cHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            89999998  899999999999999999999999999999 7999999999999987654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.52  E-value=1.6e-14  Score=112.24  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=88.1

Q ss_pred             ccccHHHHHHHHhcC-----cccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccc
Q 029781            5 SIPSCLTLARLNANG-----VINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVG   76 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~-----~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   76 (188)
                      .-.++.+|++.|.++     +++++||+| +|+++  +|.+|++.                           .....++.
T Consensus       152 ~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~---------------------------~~~~~~v~  204 (286)
T 2oux_A          152 ANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIV---------------------------NDDDTLIA  204 (286)
T ss_dssp             SSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTT---------------------------SCTTSBHH
T ss_pred             CCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHc---------------------------CCCCCcHH
Confidence            346899999999987     788899999 89999  99999882                           12356899


Q ss_pred             cccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        77 ~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++..+.
T Consensus       205 ~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          205 DILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             HHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            99998  8999999999999999999999999999998899999999999998764

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.52  E-value=1.9e-14  Score=102.02  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=88.1

Q ss_pred             ccccHHHHHHHHhcCcccC-CceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINS-VPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~-~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++. +||+|+++++  +|.+|+++....   .. ...+.... . ...........++.++|.+
T Consensus        31 ~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~---~~-~~~~~~~~-~-~~~~~~~~~~~~v~~im~~  104 (157)
T 1o50_A           31 EDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF---HF-FGFIPKEE-L-IRSSMKRLIAKNASEIMLD  104 (157)
T ss_dssp             TTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHH---HH-HCCCC---------CCCCCSSCBHHHHCBC
T ss_pred             CCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhh---hH-HhhhccHH-H-HHHHHHHHcCCcHHHHcCC
Confidence            3468999999999999999 9999944888  999998842110   00 00000000 0 0000112346789999985


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                         +.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.
T Consensus       105 ---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A          105 ---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             ---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence               788999999999999999999999999998899999999999998764

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.52  E-value=3.3e-14  Score=119.18  Aligned_cols=112  Identities=15%  Similarity=0.122  Sum_probs=97.0

Q ss_pred             CCCcccccccccCCCeeEEcCC-CCHHHHHHHHHhcCCCeEEEEc-CCCcEEEEEehHHHhhchhcc--Ccccccccccc
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTT-TTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSIS--GSMRKLGFNLY  145 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~-~~l~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~~~--~~~~~~~~~~~  145 (188)
                      ....+++++|++  ++.++.++ +++.++++.|.+++++++||+| ++|+++|+||.+|+++.+...  ....++.++|.
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~  458 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALN  458 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhc
Confidence            456899999998  89999999 9999999999999999999999 789999999999999776543  23456899997


Q ss_pred             cCcc-cCCcchHHHHHHHHhccCceEEEEEeC-----CEeeceeec
Q 029781          146 FGFN-SGNAYFARWLLKFVGGINCGFLLTVEG-----AMTANIISS  185 (188)
Q Consensus       146 ~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-----~~~~giit~  185 (188)
                      +.+. +.+++++.++.++|.+++.  +||+++     +.+.||||.
T Consensus       459 ~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~  502 (527)
T 3pc3_A          459 KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATK  502 (527)
T ss_dssp             TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEH
T ss_pred             CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEH
Confidence            7666 9999999999999987665  588876     899999985

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.50  E-value=1.5e-13  Score=114.60  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=89.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceee---cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ---LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd---~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      .-.++.++.++|.+++++++||+|   +++++  +|.+|++.                          ......++.++|
T Consensus       128 ~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~--------------------------~~~~~~~V~~vM  181 (511)
T 3usb_A          128 PEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF--------------------------IQDYSIKISDVM  181 (511)
T ss_dssp             TTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT--------------------------CCCSSSBHHHHC
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh--------------------------hccCCCcHHHhc
Confidence            346899999999999999999998   46888  99999872                          123467899999


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      ++ .++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++....
T Consensus       182 ~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          182 TK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             CC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             cc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            85 267899999999999999999999999999999999999999999987754

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.50  E-value=3e-14  Score=110.25  Aligned_cols=98  Identities=19%  Similarity=0.208  Sum_probs=86.8

Q ss_pred             cccHHHHHHHHhcC-----cccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781            6 IPSCLTLARLNANG-----VINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD   77 (188)
Q Consensus         6 ~~sv~~a~~~m~~~-----~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   77 (188)
                      -.++.+|++.|.++     ++..+||+| +|+++  +|.+|++.                           .....++.+
T Consensus       151 ~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~---------------------------~~~~~~v~~  203 (278)
T 2yvy_A          151 GMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV---------------------------ADPRTRVAE  203 (278)
T ss_dssp             TSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHH---------------------------SCTTCBSTT
T ss_pred             CCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhc---------------------------CCCCCcHHH
Confidence            45899999999987     789999999 88999  99999872                           123568999


Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +|.+  ++.++++++++.++++.|.+++...+||+|++|+++|+||..|++..+.
T Consensus       204 im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          204 IMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             TSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC-
T ss_pred             HhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            9988  8999999999999999999999999999998899999999999998764

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.49  E-value=1.7e-13  Score=113.44  Aligned_cols=109  Identities=21%  Similarity=0.208  Sum_probs=96.5

Q ss_pred             CCcccccccccCCCeeEEcCCCCHHHHHHHHHhc-----CCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccc
Q 029781           71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLY  145 (188)
Q Consensus        71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~  145 (188)
                      ...+++++|++  ++.++++++++.++++.|.++     +++++||+|++++++|++|.+|++...    ...++.++|.
T Consensus       153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----~~~~v~dim~  226 (473)
T 2zy9_A          153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----PRTRVAEIMN  226 (473)
T ss_dssp             CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----TTSBGGGTSB
T ss_pred             CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----CCCcHHHHhC
Confidence            46789999999  999999999999999999986     578999999889999999999998742    3456889996


Q ss_pred             cCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          146 FGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       146 ~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+. +++++++.++.+.|.+++...+||+| ++.+.|+||.
T Consensus       227 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~  268 (473)
T 2zy9_A          227 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTV  268 (473)
T ss_dssp             SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEeh
Confidence            5555 99999999999999999999999998 5899999984

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.48  E-value=3.7e-14  Score=100.79  Aligned_cols=109  Identities=14%  Similarity=0.110  Sum_probs=86.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceee---cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ---LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd---~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      .-.++.+|+++|.+++++++||+|   +|+++  +|.+|+.+....            ..     .........++.++|
T Consensus        28 ~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~------------~~-----~~~~~~~~~~v~~~m   90 (164)
T 2pfi_A           28 KDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA------------EP-----PSRAPGHQQCLQDIL   90 (164)
T ss_dssp             TTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC------------------------CCCCBHHHHH
T ss_pred             CCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh------------hc-----cccCCcccchhhhhh
Confidence            346899999999999999999998   47888  999998742110            00     000111345788999


Q ss_pred             ccCCC------eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           80 TKKED------LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        80 ~~~~~------~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      .+  +      +.++.+++++.++++.|.+++.+.+||+| +|+++|+||..|+++++..
T Consensus        91 ~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           91 AR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             HT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             cc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence            87  5      78999999999999999999999999999 7999999999999987643

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.48  E-value=5.4e-15  Score=123.19  Aligned_cols=141  Identities=17%  Similarity=0.089  Sum_probs=15.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-c---CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-L---PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~---~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      -.++.+|+++|.+++++++||+| +   ++++  +|.+|++..                         ......++.++|
T Consensus       113 ~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-------------------------~~~~~~~V~diM  167 (503)
T 1me8_A          113 DQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-------------------------LTQTETKVSDMM  167 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-------------------------hccccCcHHHHh
Confidence            46889999999999999999999 5   7899  999998721                         112356899999


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc-ccccccccCcccCCcchHHH
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR-KLGFNLYFGFNSGNAYFARW  158 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  158 (188)
                      ++..++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++......... ....++.. ..+... ...+
T Consensus       168 ~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~~~d~~~~l~v~-a~v~~~-~~~e  245 (503)
T 1me8_A          168 TPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQKRYLVG-AGINTR-DFRE  245 (503)
T ss_dssp             ------------------------------------------------------CCCCBCTTSCBCCE-EEECSS-SHHH
T ss_pred             CCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccchhccccccccc-cccCch-hHHH
Confidence            98222999999999999999999999999999999999999999999998765322211 11112111 112333 3333


Q ss_pred             HHHHHhccCceEEEE
Q 029781          159 LLKFVGGINCGFLLT  173 (188)
Q Consensus       159 v~~~l~~~~~~~~~v  173 (188)
                      ..+.+.+.+...+++
T Consensus       246 ~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          246 RVPALVEAGADVLCI  260 (503)
T ss_dssp             HHHHHHHHTCSEEEE
T ss_pred             HHHHHHhhhccceEE
Confidence            456666678877555

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.46  E-value=3.5e-14  Score=118.00  Aligned_cols=102  Identities=23%  Similarity=0.259  Sum_probs=78.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+++.++.++|.+++++++||+| +++++  ||.+|++.                          ......++.++|++
T Consensus       104 ~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~--------------------------~~~~~~~v~diM~p  157 (496)
T 4fxs_A          104 PEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRF--------------------------VTDLTKSVAAVMTP  157 (496)
T ss_dssp             SSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTT--------------------------CCCTTSBGGGTSEE
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhh--------------------------cccCCCcHHHHhcC
Confidence            347899999999999999999999 88999  99999871                          12345689999993


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ..++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++...
T Consensus       158 ~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          158 KERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             GGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence            224889999999999999999999999999999999999999999998654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.45  E-value=2.7e-14  Score=118.50  Aligned_cols=101  Identities=24%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE   83 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~   83 (188)
                      -.++.+|+++|.+++++++||+|+++++  +|.+|+..                          ......++.++|++..
T Consensus       104 ~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~--------------------------~~~~~~~V~~vMtp~~  157 (490)
T 4avf_A          104 STKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRV--------------------------KPNAGDTVAAIMTPKD  157 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhh--------------------------ccccCCcHHHHhccCC
Confidence            4678999999999999999999988899  99999861                          1233568999999422


Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ++.++++++++.+++++|.+++.+.+||+|++|+++|+||.+|+++...
T Consensus       158 ~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          158 KLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             -------------------------------------------------
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            4889999999999999999999999999999999999999999998754

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.42  E-value=2.4e-13  Score=116.17  Aligned_cols=125  Identities=14%  Similarity=-0.005  Sum_probs=85.8

Q ss_pred             ccccHHHHHHHHh-cCcccCCceee-cCceE--ecCCcccccccccccchhhh-------------hhhccCCCCCCC--
Q 029781            5 SIPSCLTLARLNA-NGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVK-------------AFAHNGVGITNS--   65 (188)
Q Consensus         5 ~~~sv~~a~~~m~-~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--   65 (188)
                      .-+++.++.+.|. +++++++||+| +++++  +|++|+++...........+             .+..........  
T Consensus       470 ~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  549 (632)
T 3org_A          470 PDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETP  549 (632)
T ss_dssp             SSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC----------------------------------
T ss_pred             CCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccCHHHHHhhcccCCCCCc
Confidence            3568999999999 89999999999 78999  99999986422110000000             000000000000  


Q ss_pred             -----------CCCCCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           66 -----------VPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        66 -----------~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                                 ........++.++|++  ++.++++++++.++.+.|.+++.+++||+ ++|+++|+||.+|+++...
T Consensus       550 ~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          550 SGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             ---------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCC
T ss_pred             ccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHh
Confidence                       0000111248899999  99999999999999999999999999999 5799999999999998764

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.40  E-value=2.5e-13  Score=112.36  Aligned_cols=98  Identities=19%  Similarity=0.208  Sum_probs=87.1

Q ss_pred             cccHHHHHHHHhcC-----cccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781            6 IPSCLTLARLNANG-----VINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD   77 (188)
Q Consensus         6 ~~sv~~a~~~m~~~-----~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   77 (188)
                      -.++.+|++.|.++     ++.++||+| +++++  +|.+|++.                           ...+.++++
T Consensus       171 ~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~---------------------------~~~~~~v~d  223 (473)
T 2zy9_A          171 GMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV---------------------------ADPRTRVAE  223 (473)
T ss_dssp             TCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHH---------------------------SCTTSBGGG
T ss_pred             CCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhc---------------------------CCCCCcHHH
Confidence            45899999999986     589999999 88999  99999872                           123568999


Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +|.+  ++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++...
T Consensus       224 im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          224 IMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             TSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHH
Confidence            9988  8999999999999999999999999999999999999999999998654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.40  E-value=1e-13  Score=114.04  Aligned_cols=99  Identities=18%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceee----cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ----LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd----~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      +-.++.+|.++|.+++++++||++    +++|+  +|.+|+.                           ......+++++
T Consensus       153 P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r---------------------------f~d~~~~V~ev  205 (556)
T 4af0_A          153 PDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ---------------------------FQDAETPIKSV  205 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc---------------------------ccccceEhhhh
Confidence            346889999999999999999998    35788  9999976                           12335789999


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      |++  ++++++++.++++|.++|.++++..+||+|++++++|+||.+|+.+...
T Consensus       206 MT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          206 MTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ------------------------------------------------------
T ss_pred             ccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            999  8999999999999999999999999999999999999999999997654

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.37  E-value=8.2e-13  Score=100.65  Aligned_cols=53  Identities=17%  Similarity=0.046  Sum_probs=49.7

Q ss_pred             cccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        77 ~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      .+|.+  .++++.+++++.++..+|...|++++||++ +|+++||||++|+++++.
T Consensus       193 ~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          193 CRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             SCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            36888  899999999999999999999999999998 699999999999999875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.35  E-value=2.5e-12  Score=107.19  Aligned_cols=106  Identities=17%  Similarity=0.162  Sum_probs=91.5

Q ss_pred             cccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC--CCcEEEEEehHHHhhchhccCccccccccccc-Ccc-c
Q 029781           75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGSMRKLGFNLYF-GFN-S  150 (188)
Q Consensus        75 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~--~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~-~~~-~  150 (188)
                      .++.|.+  ++.++.+++++.++++.|.+++++++||+|+  +++++|+||.+|++..   .....++.++|.+ .+. +
T Consensus       115 ~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~~~~~~V~~vM~~~~~vtv  189 (511)
T 3usb_A          115 SESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---QDYSIKISDVMTKEQLITA  189 (511)
T ss_dssp             SSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---CCSSSBHHHHCCCCCCCCE
T ss_pred             ccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---ccCCCcHHHhcccCCCEEE
Confidence            3455666  8899999999999999999999999999998  8899999999999752   2345567888984 444 9


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +++.++.++.++|.+++...+||+| ++.+.|+||.
T Consensus       190 ~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~  225 (511)
T 3usb_A          190 PVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITI  225 (511)
T ss_dssp             ETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccH
Confidence            9999999999999999999999998 5899999984

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.33  E-value=4.9e-13  Score=112.09  Aligned_cols=103  Identities=8%  Similarity=0.066  Sum_probs=86.7

Q ss_pred             ccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            7 PSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      +++.+|+++|.+++++++||+|  +++++  ||.+||++....                     .......++.++|.+ 
T Consensus       402 ~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~---------------------~~~~~~~~V~~im~~-  459 (527)
T 3pc3_A          402 ATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVS---------------------MNRQQSDPAIKALNK-  459 (527)
T ss_dssp             CBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHH---------------------HCCCTTSBGGGGEET-
T ss_pred             CcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHh---------------------ccCcCCCcHHHHhcC-
Confidence            6899999999999999999999  78899  999999842110                     012335689999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC----CcEEEEEehHHHhhchhcc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDD----WKLVGVVSDYDLLALDSIS  134 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~----~~~~Giit~~dl~~~~~~~  134 (188)
                       ++.++.+++++.+++++|.++++  +||+|++    |+++|+||..|+++++...
T Consensus       460 -~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          460 -RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             -TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             -CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence             99999999999999999977664  7999974    8999999999999887643

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.33  E-value=9.7e-13  Score=109.31  Aligned_cols=107  Identities=13%  Similarity=0.150  Sum_probs=85.4

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccc---cCccc
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLY---FGFNS  150 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~---~~~~~  150 (188)
                      +++++|.+  ++.++.+++++.++++.|.+++++.+||+|++++++|+||.+|++...   ....++.++|.   +.+.+
T Consensus        90 ~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~---~~~~~v~diM~p~~~~vtv  164 (496)
T 4fxs_A           90 IFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT---DLTKSVAAVMTPKERLATV  164 (496)
T ss_dssp             HCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC---CTTSBGGGTSEEGGGCCEE
T ss_pred             cccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc---cCCCcHHHHhcCCCCCEEE
Confidence            45678988  899999999999999999999999999999889999999999997422   24456889998   35559


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      .++.++.++.++|.+++.+.+||+|+ +.+.|+||.
T Consensus       165 ~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~  200 (496)
T 4fxs_A          165 KEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITA  200 (496)
T ss_dssp             ECC----CGGGTCC---CCCEEEECTTSBCCEEECC
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehH
Confidence            99999999999999999999999984 899999985

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.33  E-value=5.2e-13  Score=111.15  Aligned_cols=102  Identities=24%  Similarity=0.283  Sum_probs=5.0

Q ss_pred             cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      -.++.+|+++|.+++++.+||+| +++++  +|.+|++..                          .....++.++|++.
T Consensus       111 ~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~--------------------------~~~~~~v~~im~~~  164 (494)
T 1vrd_A          111 DMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE--------------------------KNLSKKIKDLMTPR  164 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh--------------------------cCCCCcHHHHhCCC
Confidence            35789999999999999999999 78999  999998721                          11356899999853


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      .++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++....
T Consensus       165 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          165 EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             --------------------------------------------CHHHHTC
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence            367899999999999999999999999999999999999999999987643

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.29  E-value=1.6e-11  Score=102.04  Aligned_cols=107  Identities=16%  Similarity=0.180  Sum_probs=94.2

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEc--CCCcEEEEEehHHHhhchhccCccccccccccc-Cc-c
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID--DDWKLVGVVSDYDLLALDSISGSMRKLGFNLYF-GF-N  149 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd--~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~-~~-~  149 (188)
                      .++++|.+  ++.++.+++++.++++.|.+++++.+||+|  ++++++|+||.+|++...   ....++.++|.+ .+ .
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~---~~~~~v~~im~~~~~~~  165 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS---DYNAPISEHMTSEHLVT  165 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS---CSSSBTTTSCCCSCCCC
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc---cCCCcHHHHcCCCCCEE
Confidence            45789998  899999999999999999999999999999  789999999999998653   245567889985 44 4


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+++++.+++++|.+++...+||++ ++.+.|++|.
T Consensus       166 v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~  202 (491)
T 1zfj_A          166 AAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITI  202 (491)
T ss_dssp             EETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEH
T ss_pred             ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEH
Confidence            88999999999999999999999998 5899999984

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.28  E-value=3.3e-11  Score=100.22  Aligned_cols=101  Identities=20%  Similarity=0.218  Sum_probs=87.5

Q ss_pred             cccHHHHHHHHhcCcccCCceee---cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ---LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd---~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      -+++.+++++|.+++++++||+|   +++++  +|.+|++..                          .....++.++|+
T Consensus       106 ~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~--------------------------~~~~~~v~~im~  159 (491)
T 1zfj_A          106 EHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI--------------------------SDYNAPISEHMT  159 (491)
T ss_dssp             SSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC--------------------------SCSSSBTTTSCC
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh--------------------------ccCCCcHHHHcC
Confidence            35799999999999999999997   67888  999998721                          123568999998


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      +. ++.++++++++.++++.|.+++.+.+||+|++|+++|++|..|+++....
T Consensus       160 ~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          160 SE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             CS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            52 47899999999999999999999999999999999999999999987753

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.24  E-value=2.7e-12  Score=106.58  Aligned_cols=96  Identities=28%  Similarity=0.373  Sum_probs=0.5

Q ss_pred             ccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCCC
Q 029781            7 PSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKED   84 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~   84 (188)
                      +++.++.++|.+++++++||+|+++++  +|.+|++.                            ....++.++|++  +
T Consensus       110 ~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~----------------------------~~~~~v~~im~~--~  159 (486)
T 2cu0_A          110 ETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAA----------------------------REGKLVKELMTK--E  159 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhcc----------------------------CCCCCHHHHccC--C
Confidence            578899999999999999999988888  99999871                            135689999998  8


Q ss_pred             eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+++...
T Consensus       160 ~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          160 VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -----------------------------------------------C
T ss_pred             CeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            999999999999999999999999999999999999999999998765

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.23  E-value=2.2e-12  Score=107.84  Aligned_cols=104  Identities=17%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             ccccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      .-+++.+|.++|.+++++.+||+|+    ++++  +|.+|+....                        ......++.++
T Consensus       123 ~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~------------------------~~~~~~~v~~v  178 (514)
T 1jcn_A          123 PSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLA------------------------EKDHTTLLSEV  178 (514)
T ss_dssp             C-----------------CEESCC--------CCEECTTTTC--------------------------------------
T ss_pred             CCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhh------------------------hccCCCCHHHH
Confidence            3468899999999999999999994    7888  9999987210                        01235689999


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      |++..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++...
T Consensus       179 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          179 MTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             --CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             hCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence            985335789999999999999999999999999999999999999999997664

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.22  E-value=1e-12  Score=109.49  Aligned_cols=106  Identities=14%  Similarity=0.014  Sum_probs=1.3

Q ss_pred             ccc-cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEehHHHhhchhccCcccccccccccC--c-
Q 029781           76 GDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGSMRKLGFNLYFG--F-  148 (188)
Q Consensus        76 ~~i-m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~---~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~--~-  148 (188)
                      .++ |.+  ++.++.+++++.++++.|.+++++.+||+|++   ++++|+||.+|++..  ......++.++|.+.  + 
T Consensus        99 ~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~~~~~~~V~diM~~~~~~~  174 (503)
T 1me8_A           99 FKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--LTQTETKVSDMMTPFSKLV  174 (503)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             cccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--hccccCcHHHHhCCCCCCE
Confidence            344 988  89999999999999999999999999999976   899999999999864  223445678899874  4 


Q ss_pred             ccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 NSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus       175 tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~  212 (503)
T 1me8_A          175 TAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFR  212 (503)
T ss_dssp             --------------------------------------
T ss_pred             EEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEe
Confidence            499999999999999999999999998 5789999985

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.21  E-value=1.2e-12  Score=108.85  Aligned_cols=107  Identities=19%  Similarity=0.184  Sum_probs=1.1

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccccccccccc--Ccc-c
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYF--GFN-S  150 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~--~~~-~  150 (188)
                      ++.++|.+  ++.++.+++++.++++.|.+++++.+||+|++++++|+||.+|+++..   ....++.++|.+  .+. +
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~---~~~~~v~~im~~~~~~~~v  170 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK---NLSKKIKDLMTPREKLIVA  170 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc---CCCCcHHHHhCCCCCCeEE
Confidence            46788998  899999999999999999999999999999889999999999998632   234567888985  555 9


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+++++.++.++|.+++...+||++ ++.+.|+||.
T Consensus       171 ~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~  206 (494)
T 1vrd_A          171 PPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITI  206 (494)
T ss_dssp             ------------------------------------
T ss_pred             CCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEH
Confidence            9999999999999999999999997 5899999984

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.21  E-value=6.6e-11  Score=72.50  Aligned_cols=63  Identities=21%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---cccccccccccCc
Q 029781           85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLYFGF  148 (188)
Q Consensus        85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~~~  148 (188)
                      ++++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.....+   ...+++++|.+.+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~   67 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNP   67 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence            67999999999999999999999999998 589999999999986443222   2345788887654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.18  E-value=2.2e-12  Score=107.12  Aligned_cols=107  Identities=17%  Similarity=0.141  Sum_probs=3.2

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccc---cCcc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLY---FGFN  149 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~---~~~~  149 (188)
                      .+++++|.+  ++.++.+++++.+++++|.+++++.+||+| +++++|+||.+|+....   ....++.++|.   +.+.
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~---~~~~~V~~vMtp~~~~vt  161 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKP---NAGDTVAAIMTPKDKLVT  161 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhcc---ccCCcHHHHhccCCCCEE
Confidence            356788988  899999999999999999999999999999 79999999999996432   23456889998   3455


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.++.++.++.++|.+++...+||+| ++.+.|+||.
T Consensus       162 v~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~  198 (490)
T 4avf_A          162 AREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTF  198 (490)
T ss_dssp             -------------------------------------
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh
Confidence            99999999999999999999999998 5899999985

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.06  E-value=4.7e-12  Score=105.83  Aligned_cols=109  Identities=18%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCccccccccccc--Cc
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYF--GF  148 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~--~~  148 (188)
                      ++.++|.+  ++.++.+++++.++++.|.+++++.+||+|+   +++++|+||.+|+..... .....++.++|.+  .+
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~-~~~~~~v~~vm~~~~~~  185 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE-KDHTTLLSEVMTPRIEL  185 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC-----------------CCBCC
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh-ccCCCCHHHHhCCCCCC
Confidence            56788988  8999999999999999999999999999997   489999999999986421 1234557888886  55


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      . +.+++++.++.++|.+++...+||++ ++.+.|+||.
T Consensus       186 ~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~  224 (514)
T 1jcn_A          186 VVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIAR  224 (514)
T ss_dssp             CCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----C
T ss_pred             eEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEH
Confidence            5 89999999999999999999999997 6899999984

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.06  E-value=1.6e-11  Score=101.06  Aligned_cols=102  Identities=16%  Similarity=0.162  Sum_probs=0.0

Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCc
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNA  153 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (188)
                      .|..  +|+++.++.++.+++++|.+++++.+||+++   +++++||||.+|+...    +...++.++|.+.+. .+..
T Consensus       143 g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~----d~~~~V~evMT~~lvt~~~~  216 (556)
T 4af0_A          143 GFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ----DAETPIKSVMTTEVVTGSSP  216 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc----ccceEhhhhcccceEEecCC
Confidence            3556  7899999999999999999999999999985   5789999999998642    345678999988776 8888


Q ss_pred             chHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          154 YFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       154 ~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+++++.++|.++++..+||+| ++.+.|+||.
T Consensus       217 ~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~  249 (556)
T 4af0_A          217 ITLEKANSLLRETKKGKLPIVDSNGHLVSLVAR  249 (556)
T ss_dssp             ---------------------------------
T ss_pred             CCHHHHHHHHHHccccceeEEccCCcEEEEEEe
Confidence            9999999999999999999997 5799999984

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.99  E-value=4.4e-11  Score=99.32  Aligned_cols=104  Identities=20%  Similarity=0.208  Sum_probs=1.4

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCC
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGN  152 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~  152 (188)
                      ...+.|..  ++.++.+++++.++++.|.+++++++||+|+ ++++|+|+.+|++.     ....++.++|.+.+. +.+
T Consensus        94 ~~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-----~~~~~v~~im~~~~~~v~~  165 (486)
T 2cu0_A           94 RAERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-----REGKLVKELMTKEVITVPE  165 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-----CCCCCHHHHccCCCeEECC
Confidence            34567887  8999999999999999999999999999997 99999999999986     234567888885554 889


Q ss_pred             cchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          153 AYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       153 ~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      ++++.+++++|.+++.+.+||++ ++.+.|++|.
T Consensus       166 ~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~  199 (486)
T 2cu0_A          166 SIEVEEALKIMIENRIDRLPVVDERGKLVGLITM  199 (486)
T ss_dssp             ----------------------------------
T ss_pred             cCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEH
Confidence            99999999999999999999998 5789999985

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.79  E-value=1e-09  Score=67.14  Aligned_cols=62  Identities=11%  Similarity=0.083  Sum_probs=48.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-+|+.+|+++|.+++++++||+|+|+++  +|++|++++..                    +........+++++|++ 
T Consensus         7 p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~--------------------~~~~~~~~~~V~~iMt~-   65 (70)
T 3ghd_A            7 PKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVV--------------------AKGKNPKEVKVEEIMTK-   65 (70)
T ss_dssp             TTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTT--------------------TTTCCGGGCBGGGTCEE-
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHH--------------------hcCCCcccCCHHHhcCC-
Confidence            45789999999999999999999999999  99999974221                    11123446789999998 


Q ss_pred             CCeeEE
Q 029781           83 EDLHAV   88 (188)
Q Consensus        83 ~~~~~v   88 (188)
                       +++++
T Consensus        66 -~~iTV   70 (70)
T 3ghd_A           66 -NPVKI   70 (70)
T ss_dssp             -CTTCC
T ss_pred             -CCeEC
Confidence             77653

>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1

Probab=80.48  E-value=2.9  Score=25.33  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=24.7

Q ss_pred             CCeEEEEcCCCcEEEEEehHHHhhchhccCc
Q 029781          106 ITGFPVIDDDWKLVGVVSDYDLLALDSISGS  136 (188)
Q Consensus       106 ~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~  136 (188)
                      ...+=++|++|.-+|+++..+.++.....+.
T Consensus        13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~L   43 (78)
T 1tif_A           13 AREVRLIDQNGDQLGIKSKQEALEIAARRNL   43 (78)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCcCCCcccHHHHHHHHHHcCC
Confidence            3456688999999999999999987765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	7e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	1e-07
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-04
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	5e-07
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	1e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-06
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	8e-04
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	1e-06
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-06
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.001
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	4e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	2e-05
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	7e-06
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-05
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	7e-06
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	8e-06
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	9e-05
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-05
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	4e-05
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-05
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	0.003
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	3e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.002
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-04
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-05
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	7e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	3e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	4e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	5e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	6e-05
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	7e-05
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	9e-05
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	2e-04
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	5e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	5e-04
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	5e-04
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	0.004
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	5e-04
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	6e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	6e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.001

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.1 bits (111), Expect = 7e-08
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 66  VPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDY 125
           +        + + MTK+EDL       T+ EA E L   +    P+++++ +LV +++  
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113

Query: 126 DLL 128
           DL 
Sbjct: 114 DLK 116

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
                   +   +       T++  + RLVE  +    V+D+   + G+VS  D+L
Sbjct: 84  LQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 137

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 74  TVGDFM-TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
           ++ +       ++  V+TTT V  AL   V+ R++  PV+D+  ++V + S +D++ L +
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 133 ISGSMRK 139
                  
Sbjct: 70  EKTYNNL 76

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 44.9 bits (105), Expect = 5e-07
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V D MT+    H +  T T+++A   +    I   P++D + KL+G+VS  DLL
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 55

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           D+ +V     + E+   + + +I   PV+  D  LVG+++D D +
Sbjct: 84  DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFV 127

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
              + M    D   V   T ++EAL+ +++  I   PV+D+  ++VG ++  ++L
Sbjct: 85  NASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (82), Expect = 8e-04
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V   ++       V+  T ++E ++R++E  +T    +  D KLVG++    LL
Sbjct: 5   DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL 57

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            +  +MTK   L  VK +T+V EA   ++E  +    VI+DD  +VG  +  D++
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII 58

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 86  HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
                 T + E L ++ E RI    + ++  K+VG+ +  DLL
Sbjct: 81  ITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D+
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI 53

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 86  HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           + V    ++ E L  + E ++   PVI +  +LVG+V++ D+ 
Sbjct: 78  YYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 119

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYD 126
            +  +  +   +  V   T +  AL+ L+       PV+D +  LVG+V + D
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETD 55

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            V + MT+           TV E   ++ +  I   PVI  +  L+G++ D+DLL
Sbjct: 100 PVAEIMTRDV--IVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (97), Expect = 7e-06
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 73  YTVGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
             +GD  +  ++++ + + TT V + ++ L + R++  P+ID++  L+ V   YD+L
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 62

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
                 +   ++ + + R+  F V+DD  +LVGV++  D+L
Sbjct: 94  CTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.6 bits (96), Expect = 7e-06
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           TVG FM + + +  V+    ++ AL  L +   T  PV+D  ++L G++    ++
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM 57

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 8e-06
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFP-VIDDDWKLVGVVSDYDLL 128
              D +     L    T+  V +A   LV   +   P         VG+++  D +
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 69

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.0 bits (90), Expect = 9e-05
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 88  VKTTTTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLL 128
           +    ++ +A+  L+  +I   PVID +    + +++   +L
Sbjct: 109 ISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRIL 150

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 74  TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           TV   + +K   + A+    +V  A++++    I    V+ D+   VG++++ D  
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERDFS 57

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 86  HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
             V    T ++ +  + E R+   PV+DD  K++G++S  DL+
Sbjct: 81  AYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 122

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           + D + +   + +V      ++  + + +      PV D D  L+G+V+  D++
Sbjct: 67  IADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDII 118

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYD 126
           T G  MT   +  ++    TV  A+  L  +      I    V+D +  LVGV+S  D
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRD 57

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 30  PITVATPSHLSKRLRFFTVSRE----VKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDL 85
           P+T+  P+  +  L  F   +     V       VGI +              M  K D+
Sbjct: 11  PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAMLVKRDV 70

Query: 86  HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
             VK   T+ +A + ++E       V+D   K VG+++  D++
Sbjct: 71  PVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW 116
           V   MT+  +   +    T + ALE   + ++  FPV++ + 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEG 42

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDY 125
            V   M    +   V   TTV +A++ + E  + G  V DD+   VG++S+ 
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSER 53

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 92  TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
             V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 86  YDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 122

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 74  TVGDFMTKKEDLHAV----KTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDL 127
              D M  + +   +    + + TV++    + E   +GFPV+   +  +LVG V   DL
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 128 L 128
           +
Sbjct: 64  I 64

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 7e-05
 Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 72  TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           T  + + +        V   T ++  ++   +  +    V  +  +L+G+++  D+L
Sbjct: 99  TLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 152

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 78  FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           F         V     +  AL   +E +    PV+D++ +L G VS +D L
Sbjct: 63  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 113

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSD 124
           V  ++T+  D   V+ + TV E L R+ + +     V D +    GVV+ 
Sbjct: 3   VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNK 50

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 78  FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
                + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 79  RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 129

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
            + D+MT   +   V  T+    A+  +V +     PV+D + K VG+V++ + L L
Sbjct: 75  PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL 129

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.8 bits (89), Expect = 7e-05
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 73  YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVG 120
           + V  FM+    +  +     +D+A++ ++ +     PVIDDD K+VG
Sbjct: 2   FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG 47

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.3 bits (88), Expect = 9e-05
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 75  VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKL 118
           V D M    D+  +  T ++++ L   VE       V+ +  ++
Sbjct: 2   VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV 43

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 78  FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
           +   + DL  +    T+ EA E++V+  +    V +DD +++GV+S  D+L
Sbjct: 67  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 116

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 16/120 (13%)

Query: 18  NGVINSVPHLQLPITVATPSH---------LSKRLRFFTVSREVKAFAHNGVGITNSVPP 68
           NGVI        P  + TP H            R+    +   +      G+     +  
Sbjct: 1   NGVIID------PFFL-TPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF 53

Query: 69  RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
            +            E L      T ++ A   L E RI   P++D+  +L G+++  D+ 
Sbjct: 54  ISDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 79  MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-----WKLVGVVSDYDLL 128
                +   V    ++ +A   + + R    P+ID D       +V V++ Y +L
Sbjct: 111 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 86  HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
             V  T  V  A E++    I    V++ + +LVGV+S  DL 
Sbjct: 77  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 119

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 84  DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
               +   T++ +         +    V     KLVGVV+  ++ 
Sbjct: 112 SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG-KLVGVVALAEIQ 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD 114
            VGD M +  D+ ++ +T+T  + L  L + ++  FP +D 
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDT 50

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 99  ERLVEKRITGFPVIDDDWKLVGVVSDYDLL-ALDSI 133
             + +  I   PV+DD   L G++S  D+  A+D +
Sbjct: 91  ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW 116
            V ++M     + +V     +++  + + EK I    V+D + 
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK 45

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 36.3 bits (83), Expect = 6e-04
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 74  TVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYD 126
             G  MT   +  AV+   TV+E L  L         I    V+D+  +L GV+S  D
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRD 57

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 57  HNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW 116
             GV     +   +    V + M  K      +T T  +E    + +   T  PV+D++ 
Sbjct: 49  LKGVLSLRDLIVADPRTRVAEIMNPKVVYV--RTDTDQEEVARLMADYDFTVLPVVDEEG 106

Query: 117 KLVGVVSDYDLL 128
           +LVG+V+  D+L
Sbjct: 107 RLVGIVTVDDVL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.8
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.79
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.79
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.76
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.75
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.75
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.74
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.74
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.74
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.74
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.74
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.74
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.73
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.73
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.73
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.73
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.72
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.71
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.71
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.71
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.71
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.7
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.7
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.69
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.69
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.69
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.69
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.69
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.69
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.68
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.68
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.68
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.66
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.65
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.65
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.65
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.64
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.63
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.63
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.61
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.61
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.6
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.59
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.58
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.58
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.58
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.56
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.54
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.52
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.52
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.49
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.44
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	86.85

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=5.2e-20  Score=124.49  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=97.5

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---cccccccccccCcc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLYFGFN  149 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~~~~  149 (188)
                      ++++|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.....+   ....+.++|.+.+.
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   78 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   78 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccce
Confidence            368999999  9999999999999999999999999999998899999999999975433222   22346788887766


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                       +.+++++.+++++|.+++.+.+||++++.+.|+||.
T Consensus        79 ~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~  115 (123)
T d1y5ha3          79 YVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTE  115 (123)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             eeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEH
Confidence             999999999999999999999999999999999985

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.79  E-value=2.3e-19  Score=123.77  Aligned_cols=111  Identities=24%  Similarity=0.229  Sum_probs=98.5

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC----------ccccccc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG----------SMRKLGF  142 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~----------~~~~~~~  142 (188)
                      ++++|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++......          ...++.+
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~   79 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE   79 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH
Confidence            478999999  9999999999999999999999999999999999999999999997664321          1234677


Q ss_pred             ccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          143 NLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       143 ~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +|.+.+. +.+++++.++.++|.+++.+.+||++++.+.|+||.
T Consensus        80 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~  123 (139)
T d2o16a3          80 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITD  123 (139)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECH
T ss_pred             hhccccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEH
Confidence            8876666 999999999999999999999999999999999985

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=8e-19  Score=119.96  Aligned_cols=111  Identities=21%  Similarity=0.199  Sum_probs=99.9

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc-
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN-  149 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~-  149 (188)
                      .+|+++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|++|..|+++.....+  ...++.++|.+.+. 
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~~~   82 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLIT   82 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCCE
T ss_pred             CcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeecccccccc
Confidence            479999999  9999999999999999999999999999999999999999999987554332  34468889987777 


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      +.+++++.++++.|.+++.+.+||++++.+.|++|.
T Consensus        83 v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~  118 (132)
T d2yzia1          83 ANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTL  118 (132)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             cCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence            999999999999999999999999999999999985

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=2.1e-18  Score=115.92  Aligned_cols=109  Identities=18%  Similarity=0.133  Sum_probs=97.6

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc--ccccccccccCcc-c
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS--MRKLGFNLYFGFN-S  150 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~~~~~-~  150 (188)
                      +++|+|++  ++.++++++++.+|++.|.+++.+.+||.+ +|+++|++|.+|+++++..+..  ..++.++|.+.+. +
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~v   77 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTI   77 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccccccceeEeeecccccccc
Confidence            47899999  999999999999999999999999999998 5899999999999987655432  3457888877777 9


Q ss_pred             CCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          151 GNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       151 ~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                      .+++++.+++++|.+++...+||++++.+.|++|.
T Consensus        78 ~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~  112 (120)
T d1pbja3          78 SPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISA  112 (120)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             cchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEH
Confidence            99999999999999999999999999999999985

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=2.6e-18  Score=120.39  Aligned_cols=125  Identities=16%  Similarity=0.202  Sum_probs=90.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhh---------hhccCCCCCCCCCCCCCC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKA---------FAHNGVGITNSVPPRNGT   72 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~   72 (188)
                      .-.++.+|+++|.+++++++||+| +|+++  +|..|+++.............         ..................
T Consensus        19 ~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (156)
T d2yzqa1          19 EGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPN   98 (156)
T ss_dssp             TTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------------CC
T ss_pred             CcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhhhhhhHHHhhhcccC
Confidence            346899999999999999999999 89999  999999753221111100000         000000011111223456


Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      .+++++|++  ++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++++
T Consensus        99 ~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          99 KPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             CBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             CEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            789999999  899999999999999999999999999999999999999999999865

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=7.2e-18  Score=116.55  Aligned_cols=111  Identities=16%  Similarity=0.167  Sum_probs=97.7

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---cccccccccccCcc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLYFGFN  149 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~~~~  149 (188)
                      ++++++|++  ++.++++++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.....+   ...+++++|...+.
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~   80 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP   80 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCC
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccccccccccccccccc
Confidence            589999999  9999999999999999999999999999998899999999999986543222   23357888877666


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                       +.+++++.++.++|.+++...+||++ ++.+.|++|.
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~  118 (142)
T d1pvma4          81 KVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTL  118 (142)
T ss_dssp             EEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEH
T ss_pred             cccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEH
Confidence             99999999999999999999999997 5799999985

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.74  E-value=1.2e-17  Score=113.32  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=95.7

Q ss_pred             ccccccccC-CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---cccccccccccCcc
Q 029781           74 TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLYFGFN  149 (188)
Q Consensus        74 ~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~~~~  149 (188)
                      +++++|... ++++++.+++++.+|++.|.+++++.+||++ +|+++|++|.+|+++.....+   ....+.++|.+.+.
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   81 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA   81 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccccceeEeeeccceeE
Confidence            678888732 2789999999999999999999999999998 689999999999986543222   23457888877766


Q ss_pred             -cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          150 -SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       150 -~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                       +.+++++.++.++|.+++.+.+||++++.+.|+||.
T Consensus        82 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~  118 (127)
T d2rc3a1          82 YVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSI  118 (127)
T ss_dssp             CBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             EeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEH
Confidence             999999999999999999999999999999999985

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=1e-18  Score=117.94  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=89.4

Q ss_pred             cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      ..-+++.+|+++|.+++++++||+| +|+++  +|.+|+++....                    .........++++|.
T Consensus        15 ~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~--------------------~~~~~~~~~v~~im~   74 (123)
T d1y5ha3          15 GEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA--------------------AGLDPNTATAGELAR   74 (123)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGG--------------------GTCCTTTSBHHHHHT
T ss_pred             CCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhh--------------------cCCCcccceEEEEee
Confidence            3457899999999999999999999 88999  999998742110                    012334567899999


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      +  ++.++.+++++.++++.|.+++++++||+| +|+++|+||..|+++++
T Consensus        75 ~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          75 D--SIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             T--CCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred             c--cceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence            8  899999999999999999999999999998 58999999999999864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=6.9e-18  Score=113.53  Aligned_cols=99  Identities=16%  Similarity=0.050  Sum_probs=89.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+|+.+|+++|.+++++.+||+| +|+++  ++.+|+++.                           ....++.++|..
T Consensus        16 ~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~---------------------------~~~~~v~~~~~~   68 (121)
T d1vr9a3          16 ESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL---------------------------DLDSSVFNKVSL   68 (121)
T ss_dssp             TTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS---------------------------CTTSBSGGGCBC
T ss_pred             CCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh---------------------------hccccccccccC
Confidence            467999999999999999999999 88998  999998831                           224589999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++++++++.++++.|.+++...+||+|++|+++|+||..|+++++.
T Consensus        69 --~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          69 --PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             --TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             --ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence              8999999999999999999999999999999999999999999998764

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=2.9e-18  Score=115.59  Aligned_cols=98  Identities=16%  Similarity=0.132  Sum_probs=71.3

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++++||+| +|+++  +|.+|++.                           ......+.++|.+
T Consensus        16 ~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~---------------------------~~~~~~~~~~~~~   68 (122)
T d2yzqa2          16 LPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILV---------------------------NPDEEQLAMLVKR   68 (122)
T ss_dssp             SSCC------------CCEEEEECTTCCEEEEEESSCC-------------------------------------CCCBS
T ss_pred             CcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhh---------------------------hhcccchhhcccc
Confidence            456899999999999999999999 89999  99999882                           1234578899999


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                        +++++++++++.++++.|.+++++.+||+|++|+++|+||.+|++++.
T Consensus        69 --~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          69 --DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             --CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             --ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence              899999999999999999999999999999999999999999999754

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.74  E-value=1.3e-18  Score=118.10  Aligned_cols=104  Identities=21%  Similarity=0.240  Sum_probs=90.1

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-+++.+|+++|.+++++++||+++|+++  +|.+|+++...                    .........++.++|++ 
T Consensus        20 ~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~--------------------~~~~~~~~~~v~~im~~-   78 (127)
T d2rc3a1          20 PDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSY--------------------LLDKPVKDTQVKEIMTR-   78 (127)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGG--------------------GSSSCGGGSBGGGTSBC-
T ss_pred             CcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhh--------------------hhcccccceeEeeeccc-
Confidence            45799999999999999999999999999  99999874211                    01123345789999999 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                       ++.++.+++++.++++.|.+++++++||+| +|+++|+||..|++++.
T Consensus        79 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          79 -QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             -SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             -eeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence             999999999999999999999999999998 68999999999999764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.74  E-value=1.6e-18  Score=117.62  Aligned_cols=104  Identities=21%  Similarity=0.240  Sum_probs=91.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.++.+|+++|.+++++++||+|+|+++  +|.+|+++...                      .......++.++|.+ 
T Consensus        19 ~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~----------------------~~~~~~~~v~~~~~~-   75 (127)
T d2ef7a1          19 KDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIG----------------------KGKSLETKAEEFMTA-   75 (127)
T ss_dssp             TTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH----------------------TTCCTTCBGGGTSEE-
T ss_pred             CcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHH----------------------hhccccchhhhhhhh-
Confidence            34689999999999999999999988898  99999884211                      122345689999998 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                       ++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++++.
T Consensus        76 -~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          76 -SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             -CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence             9999999999999999999999999999999999999999999998875

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=2.2e-17  Score=115.63  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=96.5

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC----------------
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG----------------  135 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~----------------  135 (188)
                      +.+++++|.+  +++++++++++.+|++.|.+++++.+||+|++|+++|++|..|+++......                
T Consensus         3 ~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d2yzqa1           3 GVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI   80 (156)
T ss_dssp             GCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred             CCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhh
Confidence            5789999999  9999999999999999999999999999999999999999999986432111                


Q ss_pred             ----------------cccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          136 ----------------SMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       136 ----------------~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                                      ...++.++|.+.+. +.+++++.++.+.|.+++...+||++ ++.+.|++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~  148 (156)
T d2yzqa1          81 LESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRD  148 (156)
T ss_dssp             ----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEH
T ss_pred             hhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEH
Confidence                            11235677777666 89999999999999999999999997 5799999985

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=2e-17  Score=111.21  Aligned_cols=107  Identities=21%  Similarity=0.167  Sum_probs=95.0

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cC
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SG  151 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~  151 (188)
                      ++++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|++++..    ..++.+++...+. ++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~----~~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----DSSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----TSBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc----cccccccccCccEEEC
Confidence            468999999  9999999999999999999999999999998999999999999987542    3456777765555 99


Q ss_pred             CcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          152 NAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       152 ~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +++.+.+++++|.+++...+||++ ++.+.|+||.
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~  109 (121)
T d1vr9a3          75 EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSL  109 (121)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEH
T ss_pred             CCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEH
Confidence            999999999999999999999996 5799999985

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.73  E-value=3.2e-18  Score=116.19  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=87.0

Q ss_pred             ccccHHHHHHHHhcC-----cccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccc
Q 029781            5 SIPSCLTLARLNANG-----VINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVG   76 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~-----~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   76 (188)
                      .-.|+.+|++.|.++     ++..+||+| +|++.  ++.+++..                           .....++.
T Consensus        16 ~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~---------------------------~~~~~~v~   68 (127)
T d2ouxa2          16 ANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIV---------------------------NDDDTLIA   68 (127)
T ss_dssp             SSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTT---------------------------SCTTSBHH
T ss_pred             CCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccc---------------------------ccccEEhh
Confidence            446899999999776     468899999 88998  88888762                           23356899


Q ss_pred             cccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        77 ~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ++|.+  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++++.
T Consensus        69 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          69 DILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             HHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             hhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            99999  8999999999999999999999999999998999999999999998764

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=2.4e-18  Score=116.03  Aligned_cols=107  Identities=19%  Similarity=0.237  Sum_probs=78.2

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cC
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SG  151 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~  151 (188)
                      ++++++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|++....    ...+.++|.+.++ +.
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~----~~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD----EEQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC--------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc----ccchhhccccceeecc
Confidence            468899999  9999999999999999999999999999999999999999999987543    3346777876666 99


Q ss_pred             CcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          152 NAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       152 ~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      +++++.++.++|.+++...+||+++ +.+.|++|.
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~  109 (122)
T d2yzqa2          75 ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTV  109 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             hhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEH
Confidence            9999999999999999999999974 899999985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=4e-18  Score=117.87  Aligned_cols=106  Identities=18%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|++.|.+++++++||+| +|+++  +|.+|+++....                    ........+++++|.+
T Consensus        18 ~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~--------------------~~~~~~~~~v~~im~~   77 (142)
T d1pvma4          18 WNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP--------------------RNKKPDEVPIRLVMRK   77 (142)
T ss_dssp             TTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGG--------------------GCCCGGGSBGGGTSBS
T ss_pred             CcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhh--------------------hccccccccccccccc
Confidence            457899999999999999999999 78999  999998742110                    0123345689999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++.
T Consensus        78 --~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          78 --PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             --SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             --ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence              9999999999999999999999999999999999999999999998764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.71  E-value=4.1e-17  Score=110.58  Aligned_cols=111  Identities=18%  Similarity=0.165  Sum_probs=97.7

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-cccccccccccCcc-
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-SMRKLGFNLYFGFN-  149 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-~~~~~~~~~~~~~~-  149 (188)
                      ...|+++|++  +++++.+++++.+|++.|.+++++.+||+| +|+++|++|.+|+++...... ...++.++|.+.+. 
T Consensus         3 ~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~~   79 (127)
T d2ef7a1           3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLIT   79 (127)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCCC
T ss_pred             ccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccccchhhhhhhhhccc
Confidence            4589999999  999999999999999999999999999998 489999999999998765433 34457888876666 


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+++++.++.+.|.+++...+||++ ++.+.|++|.
T Consensus        80 v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~  116 (127)
T d2ef7a1          80 IREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISI  116 (127)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             cccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEH
Confidence            99999999999999999999999996 5799999985

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=1.2e-17  Score=115.69  Aligned_cols=100  Identities=19%  Similarity=0.197  Sum_probs=88.4

Q ss_pred             cccccHHHHHHHHhcCc-----ccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccc
Q 029781            4 ISIPSCLTLARLNANGV-----INSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTV   75 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~-----~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   75 (188)
                      ..-.|+.+|+++|.+++     +..+||+| +|+++  ++.+|+..                           .....++
T Consensus        15 ~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~---------------------------~~~~~~v   67 (144)
T d2yvxa2          15 REGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV---------------------------ADPRTRV   67 (144)
T ss_dssp             CSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTT---------------------------SCTTCBS
T ss_pred             CCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhh---------------------------cccccch
Confidence            35578999999998774     78899999 89999  99999872                           2235688


Q ss_pred             ccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           76 GDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        76 ~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      .++|.+  ++.++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++++.
T Consensus        68 ~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          68 AEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             TTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHH
T ss_pred             HHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHH
Confidence            999999  9999999999999999999999999999999999999999999998764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.71  E-value=2.6e-17  Score=111.58  Aligned_cols=106  Identities=20%  Similarity=0.136  Sum_probs=95.2

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcC-----CCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCc
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKR-----ITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGF  148 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  148 (188)
                      +++.+|++  +++++++++++.+|++.|.+++     ++.+||+|++|+++|+++.++++...    ...++.++|.+.+
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~----~~~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----DDTLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----TTSBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc----ccEEhhhhccCCC
Confidence            57889999  9999999999999999998874     68899999999999999999998653    3456899998777


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      . +.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        76 ~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~  114 (127)
T d2ouxa2          76 ISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTV  114 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEH
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEH
Confidence            7 99999999999999999999999996 6899999985

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.71  E-value=2.1e-17  Score=111.90  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=85.2

Q ss_pred             cccccHHHHHHHHhcCcccCCceee---cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ---LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd---~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      ..-.++.+|+++|.+++++++||+|   +++++  +|.+|+.+..                         .........+
T Consensus        11 ~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~-------------------------~~~~~~~~~~   65 (126)
T d1zfja4          11 TPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS-------------------------DYNAPISEHM   65 (126)
T ss_dssp             CSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS-------------------------CSSSBTTTSC
T ss_pred             CCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh-------------------------ccCCceeeee
Confidence            3457999999999999999999998   46788  9999987321                         1112223445


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      |..  +++++.+++++.+|+++|.+++++++||+|++|+++|+||..|++++...
T Consensus        66 ~~~--~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          66 TSE--HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             CCS--CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ecc--ceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            565  78899999999999999999999999999999999999999999987653

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=2.2e-17  Score=112.64  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=93.5

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-------cccccccccc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-------SMRKLGFNLY  145 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-------~~~~~~~~~~  145 (188)
                      .+++++|.+.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++......       ...++.++|.
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~   81 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML   81 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSB
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccccccccccccccccc
Confidence            478999977668899999999999999999999999999998899999999999997654321       1234677787


Q ss_pred             cCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          146 FGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       146 ~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +++. +.+++++.++..+|.+++  ++||++ ++.+.|+||.
T Consensus        82 ~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~  121 (132)
T d1yava3          82 TDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTR  121 (132)
T ss_dssp             CSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEH
T ss_pred             ccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEH
Confidence            6666 999999999999998764  478886 5899999985

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.70  E-value=1.8e-16  Score=111.05  Aligned_cols=114  Identities=13%  Similarity=0.108  Sum_probs=96.4

Q ss_pred             CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC--CCcEEEEEehHHHhhchhccC------------
Q 029781           70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISG------------  135 (188)
Q Consensus        70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~--~~~~~Giit~~dl~~~~~~~~------------  135 (188)
                      ....+++|+|++  ++.++++++++.+|++.|.+++++.+||+|+  ++.++|+++..|+++++....            
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            347899999999  9999999999999999999999999999984  468999999999987553210            


Q ss_pred             ---------------cccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          136 ---------------SMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       136 ---------------~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                                     ....+...|.+.+. +.+++++.+++++|.+++.+.+||+++|.+.|+||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~  151 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVAL  151 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEH
Confidence                           00113446666555 999999999999999999999999999999999985

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=5.9e-18  Score=115.52  Aligned_cols=108  Identities=9%  Similarity=0.001  Sum_probs=88.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-+++.+|+++|.+++++++||+| +|+++  +|.+|+++.......                .........+++++|.+
T Consensus        19 ~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~----------------~~~~~~~~~~v~~~m~~   82 (132)
T d1yava3          19 VGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER----------------IEFEKLDQITVEEVMLT   82 (132)
T ss_dssp             TTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS----------------BCGGGTTTSBHHHHSBC
T ss_pred             CCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccc----------------ccccccccccccccccc
Confidence            457899999999999999999999 89999  999999853211000                00122345789999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        ++.++.+++++.++++.|.+++  .+||+|++|+++|+||.+|+++++.
T Consensus        83 --~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          83 --DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             --SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             --cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHH
Confidence              8999999999999999998764  5999999999999999999998764

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=1.1e-17  Score=112.30  Aligned_cols=103  Identities=20%  Similarity=0.217  Sum_probs=89.2

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-.|+.+|++.|.+++++.+||+++|+++  +|.+|+++....                     .......++.++|.+ 
T Consensus        15 ~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~---------------------~~~~~~~~v~~~m~~-   72 (120)
T d1pbja3          15 ITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAE---------------------GDDLAEVKVWEVMER-   72 (120)
T ss_dssp             TTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHH---------------------TCCTTTSBHHHHCBC-
T ss_pred             CcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeeccccccc---------------------cccccceeEeeeccc-
Confidence            45789999999999999999999988999  999999842210                     123446789999999 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                       ++.++++++++.+|++.|.+++.+++||++ +|+++|++|..|++++.
T Consensus        73 -~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          73 -DLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             -GGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             -ccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence             999999999999999999999999999987 68999999999999763

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=2.4e-17  Score=112.49  Aligned_cols=105  Identities=25%  Similarity=0.272  Sum_probs=90.3

Q ss_pred             cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      ..-+++.+|+++|.+++++++||+| +|+++  +|.+|+++...                     ........+++++|.
T Consensus        19 ~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~---------------------~~~~~~~~~v~~im~   77 (132)
T d2yzia1          19 KPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVI---------------------VPGLPYDIPVERIMT   77 (132)
T ss_dssp             CTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTT---------------------TTCCCTTSBGGGTCB
T ss_pred             CCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHh---------------------hccCccceeEeeccc
Confidence            3457899999999999999999999 88999  99999884221                     012334578999999


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  ++.++.+++++.++++.|.+++++++||.+ +|+++|+||.+|++++..
T Consensus        78 ~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          78 R--NLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             C--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             c--cccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            9  999999999999999999999999999876 689999999999998764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.69  E-value=1.5e-17  Score=114.52  Aligned_cols=113  Identities=15%  Similarity=0.144  Sum_probs=90.1

Q ss_pred             cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      ..-.++.+|++.|.+++++++||+| +|+++  +|.+|+++.....    .    ..     ...........+++++|.
T Consensus        16 ~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~----~----~~-----~~~~~~~~~~~~v~~im~   82 (139)
T d2o16a3          16 LRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS----L----QR-----SAQGDSLAFETPLFEVMH   82 (139)
T ss_dssp             CTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH----C----C--------------CCCBHHHHSC
T ss_pred             CCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhh----h----hh-----hhcccccccccchhHhhc
Confidence            4457899999999999999999999 89999  9999988421110    0    00     000112344678999999


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  ++.++++++++.+|++.|.+++.+++||+| +|+++|+||..|++++..
T Consensus        83 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          83 T--DVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             S--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred             c--ccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            8  999999999999999999999999999999 589999999999998764

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.69  E-value=7.4e-17  Score=109.71  Aligned_cols=111  Identities=14%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEehHHHhhchhccCcccc-cccccccCcc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDLLALDSISGSMRK-LGFNLYFGFN  149 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dl~~~~~~~~~~~~-~~~~~~~~~~  149 (188)
                      ++++|+|++  +++++++++++.+|++.|.+++++++||+  |++++++|+++..|+.++......... ....+.+.+.
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~~   78 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPIT   78 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCCE
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccccccccccccccee
Confidence            378999999  99999999999999999999999999999  556889999999999987655443332 3444445555


Q ss_pred             cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.++++..+++++|.+++.+.+||++ +|.+.|+||.
T Consensus        79 v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~  115 (131)
T d2riha1          79 VLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSI  115 (131)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             EeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEH
Confidence            88999999999999999999999996 5799999985

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=1.7e-17  Score=114.96  Aligned_cols=106  Identities=22%  Similarity=0.224  Sum_probs=94.0

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcC-----CCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCc
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKR-----ITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGF  148 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  148 (188)
                      +++.+|++  +++++++++++.+|++.|.+++     +..+||+|++|+++|+++.+|+....    ....+.++|.+.+
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~----~~~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----PRTRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSC----TTCBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcc----cccchHHhcccCC
Confidence            57889999  9999999999999999998774     77899999999999999999998654    2345688888766


Q ss_pred             c-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781          149 N-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS  185 (188)
Q Consensus       149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~  185 (188)
                      . +.+++++.+++++|.+++...+||+++ +.+.|+||.
T Consensus        76 ~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~  114 (144)
T d2yvxa2          76 VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTV  114 (144)
T ss_dssp             CCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEH
T ss_pred             ccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEH
Confidence            6 999999999999999999999999975 899999985

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=4.5e-17  Score=112.10  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=97.3

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--------ccccccccc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--------SMRKLGFNL  144 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--------~~~~~~~~~  144 (188)
                      .+|+++|++  ++.++++++++.+|++.|.+++++++||+|++++++|+++..|+++......        ...+++++|
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im   79 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVM   79 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHS
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHh
Confidence            478999999  8999999999999999999999999999999999999999999987653211        234578888


Q ss_pred             ccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          145 YFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       145 ~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.+. +.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        80 ~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~  122 (141)
T d3ddja1          80 VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITE  122 (141)
T ss_dssp             BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             CcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEH
Confidence            77666 99999999999999999999999996 5899999985

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=2.5e-17  Score=112.59  Aligned_cols=115  Identities=18%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .-+++.+|+++|.+++++++||+|+ +++  ++..++++.............           ........+++++|++ 
T Consensus        16 ~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~im~~-   82 (135)
T d3ddja2          16 KEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLLSTVESYCKDSCSQG-----------DLYHISTTPIIDYMTP-   82 (135)
T ss_dssp             TTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHHGGGTTCC---CCHH-----------HHHHHHTSBGGGTSEE-
T ss_pred             CCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchhhhhccccccchhhh-----------hccccccCCHHHHhCC-
Confidence            4578999999999999999999974 566  888887743211110000000           0012235689999999 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                       ++.++++++++.+|++.|.+++++++||+|++|+++|+||.+|++++...
T Consensus        83 -~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          83 -NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             -SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             -ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence             99999999999999999999999999999999999999999999998754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=2.2e-18  Score=115.85  Aligned_cols=103  Identities=18%  Similarity=0.201  Sum_probs=56.0

Q ss_pred             ccccHHHHHHHHhcCcccCCceee----cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ----LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF   78 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd----~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   78 (188)
                      .-+++.+|+++|.+++++++||+|    +++++  +|.+|+...                        .....+.++.++
T Consensus        11 ~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~------------------------~~~~~~~~~~~~   66 (120)
T d1jr1a4          11 PKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFL------------------------KEEEHDRFLEEI   66 (120)
T ss_dssp             --CCCC--CCBC---------------CTTCCC----------------------------------------------C
T ss_pred             CcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeeh------------------------hccccCceeEEE
Confidence            346788999999999999999997    46788  999997621                        112223455666


Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      |....++.++.+++++.+|+++|.+++++++||+|++|+++|+||..|++++.
T Consensus        67 ~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          67 MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence            65433788999999999999999999999999999999999999999998753

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=3.2e-16  Score=105.91  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=85.5

Q ss_pred             cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC--CCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcch
Q 029781           79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYF  155 (188)
Q Consensus        79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~--~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  155 (188)
                      |..  +++++.+++++.+|+++|.+++++.+||+|+  +|+++|++|.+|++++.....  .....++...+. +.++..
T Consensus         3 mi~--dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~--~~~~~~~~~~~~~~~~~~~   78 (126)
T d1zfja4           3 VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNA--PISEHMTSEHLVTAAVGTD   78 (126)
T ss_dssp             TSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSS--BTTTSCCCSCCCCEETTCC
T ss_pred             CEe--CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCC--ceeeeeeccceeecCCCCC
Confidence            455  7889999999999999999999999999986  688999999999987654322  122334444444 888999


Q ss_pred             HHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          156 ARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       156 ~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.++.++|.+++.+.+||++ ++.+.|+||.
T Consensus        79 l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~  109 (126)
T d1zfja4          79 LETAERILHEHRIEKLPLVDNSGRLSGLITI  109 (126)
T ss_dssp             HHHHHHHHHHTTCSEEEEECTTSBEEEEEEH
T ss_pred             HHHHHHHHHhcCCcEEEEEcCCCeEEEEEEH
Confidence            99999999999999999997 5799999985

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=1.2e-17  Score=115.13  Aligned_cols=111  Identities=19%  Similarity=0.190  Sum_probs=90.9

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      .-.++.+|+++|.+++++++||+| ++++.  ++.+|+++......        ..       .........+++++|.+
T Consensus        17 ~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~--------~~-------~~~~~~~~~~v~~im~~   81 (141)
T d3ddja1          17 KEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV--------DK-------LDPDYFYGKVVKDVMVT   81 (141)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH--------HH-------TCTHHHHTCBHHHHSBC
T ss_pred             CcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccc--------cc-------cccccccCCCHHHHhCc
Confidence            457899999999999999999999 88888  99999874221000        00       00112235689999998


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                        +++++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.+.
T Consensus        82 --~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          82 --NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             --CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             --ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHH
Confidence              9999999999999999999999999999999999999999999998764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=3.9e-16  Score=107.80  Aligned_cols=110  Identities=17%  Similarity=0.139  Sum_probs=92.8

Q ss_pred             ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-----------------Cc
Q 029781           74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-----------------GS  136 (188)
Q Consensus        74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-----------------~~  136 (188)
                      .+.++|..  +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++++....                 ..
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   82 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence            56778998  999999999999999999999999999999889999999999998754211                 01


Q ss_pred             ccccccccccCcccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          137 MRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      ...+.+.|.+++.+.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        83 ~~~~~~~~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~  132 (145)
T d1o50a3          83 AKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS  132 (145)
T ss_dssp             SCBHHHHCBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             ccCHHHHcCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEH
Confidence            122455556666689999999999999999999999996 5899999985

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=8.2e-17  Score=111.26  Aligned_cols=121  Identities=18%  Similarity=0.132  Sum_probs=90.4

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK   81 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (188)
                      +-+++.+|++.|.+++++++||+| +|+++  +|.+|+.+............    .. . ...........+++++|. 
T Consensus        19 ~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~----~~-~-~~~~~~~~~~~~~~~~~~-   91 (145)
T d1o50a3          19 EDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPK----EE-L-IRSSMKRLIAKNASEIML-   91 (145)
T ss_dssp             TTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------------CCCCCSSCBHHHHCB-
T ss_pred             CcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccch----hH-H-HHhhhhhccccCHHHHcC-
Confidence            457899999999999999999999 88999  99999885221100000000    00 0 000112334556788886 


Q ss_pred             CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc
Q 029781           82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS  134 (188)
Q Consensus        82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~  134 (188)
                        ++.++.+++++.+|++.|.+++.+++||+|++|+++|+||..|+++++..+
T Consensus        92 --~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          92 --DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             --CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             --CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence              467899999999999999999999999999999999999999999987643

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6e-16  Score=106.92  Aligned_cols=113  Identities=13%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      ..-+++.+|+++|.+++++++||+| +|+++  +|..|+++....            ....  ...............|.
T Consensus        26 ~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~------------~~~~--~~~~~v~~~~~~~~~~~   91 (145)
T d2v8qe1          26 RTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAE------------KTYN--NLDVSVTKALQHRSHYF   91 (145)
T ss_dssp             ETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGS------------SCCC--CCSSBHHHHGGGCCSCC
T ss_pred             cCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhc------------cccc--chhhhhhhccchhhhcc
Confidence            3457899999999999999999999 88999  999999853211            0000  00000011234455667


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      +  ++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++++-
T Consensus        92 ~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          92 E--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             C--SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             C--CCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            7  8889999999999999999999999999999999999999999998764

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.8e-16  Score=111.43  Aligned_cols=122  Identities=12%  Similarity=0.113  Sum_probs=90.8

Q ss_pred             ccHHHHHHHHhcCcccCCceee---cCceE--ecCCcccccccc----cc--cchhhhhhhccCCCCCCCCCCCCCCccc
Q 029781            7 PSCLTLARLNANGVINSVPHLQ---LPITV--ATPSHLSKRLRF----FT--VSREVKAFAHNGVGITNSVPPRNGTYTV   75 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd---~~~l~--vt~~dl~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v   75 (188)
                      .++.+|.++|.+++++++||++   +++++  +|.+|++.....    ..  .......+..   .............++
T Consensus        26 ~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v  102 (169)
T d2j9la1          26 MTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTE---HSPPLPPYTPPTLKL  102 (169)
T ss_dssp             EEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSS---SCCCCCTTCCCCEEC
T ss_pred             CCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcc---cchhhhhccccccch
Confidence            3799999999999999999993   67788  999999852210    00  0000000000   001111233456779


Q ss_pred             ccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc
Q 029781           76 GDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS  134 (188)
Q Consensus        76 ~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~  134 (188)
                      +++|.+  ++.++.+++++.+++++|.+++.+++||+| +|+++|+||+.|+++++...
T Consensus       103 ~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1         103 RNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             GGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             hhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            999999  899999999999999999999999999987 68999999999999987543

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.63  E-value=2.5e-16  Score=109.91  Aligned_cols=110  Identities=18%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      ..-.++.+|+++|.+++++++||+| +|+++  +|.+|+++.....                    .......++.++|.
T Consensus        18 ~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~--------------------~~~~~~~~v~~~~~   77 (153)
T d2ooxe2          18 SMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDG--------------------DYSNLDLSVGEALL   77 (153)
T ss_dssp             CTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGG--------------------CGGGGGSBHHHHHH
T ss_pred             eCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccc--------------------cccccccchhhhee
Confidence            4457899999999999999999999 88999  9999987432110                    01112334555543


Q ss_pred             cC----CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781           81 KK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI  133 (188)
Q Consensus        81 ~~----~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  133 (188)
                      ..    .++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|++++...
T Consensus        78 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          78 KRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             TSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             eeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence            21    166789999999999999999999999999999999999999999987653

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.8e-16  Score=109.07  Aligned_cols=112  Identities=13%  Similarity=0.135  Sum_probs=81.9

Q ss_pred             cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781            4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT   80 (188)
Q Consensus         4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   80 (188)
                      ..-.++.+|+++|.+++++++||+| +|+++  +|.+|+++.........              ..............+.
T Consensus        23 ~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~   88 (140)
T d2nyca1          23 QMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND--------------LSLSVGEALMRRSDDF   88 (140)
T ss_dssp             CTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC------------------CCSBHHHHHHHCC---
T ss_pred             cCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccc--------------cccchhhhhhhhhhcc
Confidence            3457899999999999999999999 88988  99999985321100000              0000011122233445


Q ss_pred             cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      .  ++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++++
T Consensus        89 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          89 E--GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             -----CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             c--ccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            5  778999999999999999999999999999999999999999999875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=1.6e-15  Score=103.38  Aligned_cols=109  Identities=16%  Similarity=0.123  Sum_probs=94.2

Q ss_pred             cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc------------cccc
Q 029781           73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS------------MRKL  140 (188)
Q Consensus        73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~------------~~~~  140 (188)
                      ++|+++|.+  ++.++.+++++.+|++.|.+++++++||+|+  +++|+++..++++.......            ..++
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPI   76 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBG
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccchhhhhccccccCCH
Confidence            468999999  8999999999999999999999999999974  69999999999976643221            2346


Q ss_pred             ccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          141 GFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       141 ~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +++|.+.+. +.+++.+.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        77 ~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~  123 (135)
T d3ddja2          77 IDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTE  123 (135)
T ss_dssp             GGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             HHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEH
Confidence            788877666 99999999999999999999999996 5789999985

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.9e-15  Score=105.36  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=91.2

Q ss_pred             cccccccccCC--Ce--eEEcCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEehHHHhhchhccC-----------
Q 029781           73 YTVGDFMTKKE--DL--HAVKTTTTVDEALERLVEKRITGFPVI--DDDWKLVGVVSDYDLLALDSISG-----------  135 (188)
Q Consensus        73 ~~v~~im~~~~--~~--~~v~~~~~l~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dl~~~~~~~~-----------  135 (188)
                      +.++|+|.+..  ++  ..+.+++++.+|.++|.+++++.+||+  +++++++|++|.+|++.++....           
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            45788897642  22  345678899999999999999999999  45678999999999997553110           


Q ss_pred             ---------------cccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781          136 ---------------SMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS  185 (188)
Q Consensus       136 ---------------~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~  185 (188)
                                     ....+.++|.+.+. +.+++++.++.++|.+++...+||++++.+.|+||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiIt~  148 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITK  148 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             hhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEEEH
Confidence                           01125777877666 999999999999999999999999999999999985

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.59  E-value=6.7e-16  Score=104.87  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=83.0

Q ss_pred             ccccHHHHHHHHhcCcccCCcee--e-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781            5 SIPSCLTLARLNANGVINSVPHL--Q-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM   79 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVv--d-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im   79 (188)
                      .-+|+.+|+++|.+++++++||+  | +++++  ++..|+++...                       ...........|
T Consensus        16 ~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~-----------------------~~~~~~~~~~~~   72 (131)
T d2riha1          16 ETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVA-----------------------QRLDLDGPAMPI   72 (131)
T ss_dssp             TTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHH-----------------------TTCCTTSBSGGG
T ss_pred             CCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccc-----------------------cccccccccccc
Confidence            34689999999999999999999  4 57778  99999874211                       111122233445


Q ss_pred             ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781           80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  132 (188)
                      ..  ++.++.+++++.++++.|.+++++++||+|++|+++|+||..|++++..
T Consensus        73 ~~--~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          73 AN--SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             CB--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             cc--cceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            55  6789999999999999999999999999999999999999999998754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.58  E-value=8.4e-15  Score=101.99  Aligned_cols=112  Identities=17%  Similarity=0.208  Sum_probs=88.8

Q ss_pred             cccccccc-CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---ccccccccc-----
Q 029781           74 TVGDFMTK-KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNL-----  144 (188)
Q Consensus        74 ~v~~im~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~-----  144 (188)
                      ++++++.. ..+++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++......   ...++.+.|     
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~   81 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPA   81 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeec
Confidence            44555432 237899999999999999999999999999998899999999999997665432   122233332     


Q ss_pred             -ccC-cccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          145 -YFG-FNSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       145 -~~~-~~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                       ... +.+.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~  125 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSL  125 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEH
T ss_pred             ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEH
Confidence             233 3478899999999999999999999996 5899999985

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=5.6e-15  Score=101.39  Aligned_cols=107  Identities=14%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             cccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc---c------cccc-cc
Q 029781           77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK---L------GFNL-YF  146 (188)
Q Consensus        77 ~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~---~------~~~~-~~  146 (188)
                      .+|..  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++..........   .      ...+ .+
T Consensus        13 ~~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (140)
T d2nyca1          13 IITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEG   90 (140)
T ss_dssp             CCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC-----
T ss_pred             CccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhcccc
Confidence            35666  89999999999999999999999999999999999999999999987644322111   1      1222 33


Q ss_pred             CcccCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          147 GFNSGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       147 ~~~~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      .+.+.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        91 ~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~  130 (140)
T d2nyca1          91 VYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTL  130 (140)
T ss_dssp             -CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             cEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEH
Confidence            44488999999999999999999999995 6899999985

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.3e-14  Score=99.98  Aligned_cols=112  Identities=19%  Similarity=0.239  Sum_probs=89.5

Q ss_pred             cccccccc-CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcc---cc------cccc
Q 029781           74 TVGDFMTK-KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSM---RK------LGFN  143 (188)
Q Consensus        74 ~v~~im~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~---~~------~~~~  143 (188)
                      ++++++.. .+++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+......   ..      ....
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~   89 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSH   89 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCS
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhh
Confidence            55555321 12789999999999999999999999999999999999999999999877543221   11      2233


Q ss_pred             cccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          144 LYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       144 ~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      +.+... +.+++++.+++++|.+++.+.+||++ ++.+.|+||.
T Consensus        90 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~  133 (145)
T d2v8qe1          90 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSL  133 (145)
T ss_dssp             CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEH
Confidence            444444 89999999999999999999999996 6899999985

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=5.7e-15  Score=103.32  Aligned_cols=114  Identities=13%  Similarity=0.059  Sum_probs=92.3

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhhchhccCcc-------------
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSISGSM-------------  137 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~~~-------------  137 (188)
                      ..++.|+|.+..++++++.++++.+|++.|.+++++.+||+|+ +++++|+++..|++.........             
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~   91 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKI   91 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBH
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhc
Confidence            4688999976547789999999999999999999999999974 57899999999998765321110             


Q ss_pred             ----cccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe--CCEeeceeec
Q 029781          138 ----RKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE--GAMTANIISS  185 (188)
Q Consensus       138 ----~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~--~~~~~giit~  185 (188)
                          ......+.+.+. +.+++++.+++++|.+++.+.+||++  ++++.|+||.
T Consensus        92 ~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~  146 (159)
T d2v8qe2          92 ETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTH  146 (159)
T ss_dssp             HHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECH
T ss_pred             ccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeH
Confidence                012345555555 99999999999999999999999996  3789999984

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.54  E-value=1.9e-16  Score=106.24  Aligned_cols=101  Identities=19%  Similarity=0.174  Sum_probs=48.1

Q ss_pred             CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCccccccccc--ccCcc-cCCcchHH
Q 029781           84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNL--YFGFN-SGNAYFAR  157 (188)
Q Consensus        84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~  157 (188)
                      +|+++.+++++.+|+++|.+++++++||+|+   +|+++|++|.+|+....... ........+  .+.+. +.++.++.
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE-HDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-----------------------CCSBTTTSCCEETTCCHH
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc-cCceeEEEEeeccCceEECCCCCHH
Confidence            6789999999999999999999999999984   57899999999986543322 222333333  33344 78899999


Q ss_pred             HHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781          158 WLLKFVGGINCGFLLTVE-GAMTANIISS  185 (188)
Q Consensus       158 ~v~~~l~~~~~~~~~vv~-~~~~~giit~  185 (188)
                      ++.++|.+++++.+||++ ++.+.|+||.
T Consensus        84 ~a~~~m~~~~i~~lpVVd~~~~lvGiiT~  112 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVNENDELVAIIAR  112 (120)
T ss_dssp             HHHHHTCSCC---CEEEETTTEEEEEECH
T ss_pred             HHHHHHHHcCccEEEEEcCCCEEEEEEEH
Confidence            999999999999999997 4799999985

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.52  E-value=9.6e-15  Score=102.00  Aligned_cols=116  Identities=12%  Similarity=0.013  Sum_probs=86.6

Q ss_pred             ccccHHHHHHHHhcCcccCCceee-c--CceE--ecCCccccccccccc------------chhhhhhhccCCCCCCCCC
Q 029781            5 SIPSCLTLARLNANGVINSVPHLQ-L--PITV--ATPSHLSKRLRFFTV------------SREVKAFAHNGVGITNSVP   67 (188)
Q Consensus         5 ~~~sv~~a~~~m~~~~~~~~pVvd-~--~~l~--vt~~dl~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~   67 (188)
                      .-.++.+|+++|.+++++++||+| +  +.++  ++..|+++.......            ......+...        .
T Consensus        26 ~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~   97 (160)
T d2d4za3          26 STSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQR--------E   97 (160)
T ss_dssp             TTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHHHHH--------H
T ss_pred             CCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccchhhhhhhh--------h
Confidence            457899999999999999999998 2  5667  888888742110000            0000000000        1


Q ss_pred             CCCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781           68 PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD  131 (188)
Q Consensus        68 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  131 (188)
                      .......+.++|.+  .+.++.+++++.+++++|.+++++++||++ +|+++|+||++||++++
T Consensus        98 ~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          98 KNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             TTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence            12334557889999  899999999999999999999999999998 69999999999999875

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.6e-15  Score=105.15  Aligned_cols=118  Identities=13%  Similarity=0.030  Sum_probs=86.1

Q ss_pred             ccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781            7 PSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK   82 (188)
Q Consensus         7 ~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~   82 (188)
                      .++.+|+++|.+++++++||++  +++++  ++.+|+++..........    .. . ................++|.+ 
T Consensus        32 ~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~----~~-~-~~~~~~~~~~~~~~~~~~~~~-  104 (159)
T d2v8qe2          32 LQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL----VQ-I-YELEEHKIETWREVYLQDSFK-  104 (159)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT----TT-C-CCGGGCBHHHHHHHHSSSSCC-
T ss_pred             CcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccccc----ch-h-hhhhhhhcccccceeeeeecc-
Confidence            6789999999999999999998  57788  999998853211000000    00 0 000000001112345678888 


Q ss_pred             CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhhchh
Q 029781           83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDS  132 (188)
Q Consensus        83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~  132 (188)
                       +++++++++++.++++.|.+++.+++||+|+ +|+++|+||.+|+++++.
T Consensus       105 -~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2         105 -PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             -CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             -ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence             8999999999999999999999999999984 689999999999998774

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.49  E-value=4.3e-14  Score=100.62  Aligned_cols=114  Identities=12%  Similarity=0.002  Sum_probs=90.3

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhhchhcc----Ccc---------
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSIS----GSM---------  137 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~----~~~---------  137 (188)
                      ..++.|+|.+..++++++++.++.+|+..|.+++++++||+|+ +++++|++|..|+++.+...    ...         
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~   98 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKF   98 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGS
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhcc
Confidence            4578999975447899999999999999999999999999985 57899999999998754211    000         


Q ss_pred             --------cccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeC------CEeeceeec
Q 029781          138 --------RKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEG------AMTANIISS  185 (188)
Q Consensus       138 --------~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~------~~~~giit~  185 (188)
                              ......|.+++. +.+++++.++..+|.+++.+.+||+++      ..+.|++|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~  161 (179)
T d2ooxe1          99 RLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQ  161 (179)
T ss_dssp             BHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEH
T ss_pred             chhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeH
Confidence                    001224554555 999999999999999999999999973      268899974

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.44  E-value=1.4e-14  Score=103.29  Aligned_cols=120  Identities=15%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             cccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccc----cchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781            6 IPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFT----VSREVKAFAHNGVGITNSVPPRNGTYTVGD   77 (188)
Q Consensus         6 ~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   77 (188)
                      -.++.+|.+.|.+++++++||+| + ++++  +|..|+++......    .......+...      .............
T Consensus        38 ~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  111 (179)
T d2ooxe1          38 TLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKF------RLLGLREVERKIG  111 (179)
T ss_dssp             TSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGS------BHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhcc------chhhhcccceeee
Confidence            35899999999999999999998 4 6788  99999985321000    00000000000      0000111223455


Q ss_pred             ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCC-----cEEEEEehHHHhhchhc
Q 029781           78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW-----KLVGVVSDYDLLALDSI  133 (188)
Q Consensus        78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~-----~~~Giit~~dl~~~~~~  133 (188)
                      .|.+  +++++.+++++.+++..|.+++++++||+|++|     +++|++|.+||++++..
T Consensus       112 ~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1         112 AIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             CSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             eccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            7887  899999999999999999999999999998654     69999999999998753

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=86.85  E-value=0.0018  Score=45.53  Aligned_cols=57  Identities=12%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781           72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL  130 (188)
Q Consensus        72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~  130 (188)
                      ...++++|..  .+.++..+++.+.+..+|.+.+....||++++++.+|.|+.+|+..+
T Consensus       136 ~~~l~~i~~~--~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         136 QLVLREVDTR--DLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             HHHHTTSCHH--HHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             hHHHHHhhhh--hheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            4567888888  78889999999999999999999999999999999999999998654