Citrus Sinensis ID: 029825

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MKRPMPWGDQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNSPKSPDSTKSSSPQVL
Secondary Structure (PSIPRED)
ccccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkrpmpwgdqvdvissddsasdgdadngldgrqssndmtidqptkeltsegsLFRRAEMYQEYMkqlpiptqrssiipftswvglGNSIKQLYEQPLHYLTNIHLkqwdqlrfgtedehkpldslvhpckaEATVWLIEEVHRLTSCHHHLAklwlsdpmhyvfidsitlnspkspdstkssspqvl
Flexible Loop (DISEMBL)
mkrpmpwgdqvdvissddsasdgdadngldgrqssndmtidqptkeltsegslFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSItlnspkspdstkssspqvl
Low Complexity Region (SEG)
MKRPMPWgdqvdvissddsasdgdadngldgRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNspkspdstkssspQVL
Disordered region (IsUnstruct)
**********************************************************MYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITL*****************
Disordered Region (DISOPRED)
************************************************SEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSIT******************
Disordered Region (DISEMBL)
********DQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNS***************
Disordered Region (DISPRO)
*****PWGD***********************************KELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNS***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKRPMPWGDQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNSPKSPDSTKSSSPQVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9LUJ3	163	Protein RDM1 OS=Arabidops	yes	no	0.791	0.907	0.597	1e-47

>sp|Q9LUJ3|RDM1_ARATH Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 115/154 (74%), Gaps = 6/154 (3%)

Query: 15  SSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRS 74
           S D  +SD DA+   DG        +D   +++  EGSL RRAEMYQ+YMKQ+PIPT R 
Sbjct: 12  SGDSGSSDVDAEIS-DGFSP-----LDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRG 65

Query: 75  SIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEAT 134
           S+IPFTSWVGL  S+KQLY QPLHYLTN+ L++WDQ RFGT+ E + LDS++HP KAEAT
Sbjct: 66  SLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEAT 125

Query: 135 VWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           +WL+EE+HRLT  H H+A LW SDPM++ FID I
Sbjct: 126 IWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI 159

Regulator of RNA-directed DNA methylation (RdDM). Binds to single-stranded methyl DNA.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
224099821	175	predicted protein [Populus trichocarpa]	0.898	0.96	0.678	3e-60
255552097	175	conserved hypothetical protein [Ricinus	0.898	0.96	0.672	5e-60
449432680	174	PREDICTED: protein RDM1-like isoform 1 [	0.887	0.954	0.656	3e-57
297737087	174	unnamed protein product [Vitis vinifera]	0.893	0.959	0.637	2e-55
359477543	137	PREDICTED: protein RDM1 [Vitis vinifera]	0.705	0.963	0.681	6e-50
351722067	165	uncharacterized protein LOC100500129 [Gl	0.839	0.951	0.589	9e-49
297830986	167	predicted protein [Arabidopsis lyrata su	0.791	0.886	0.606	3e-47
357480933	179	hypothetical protein MTR_5g006610 [Medic	0.898	0.938	0.561	3e-46
51535316	173	unknown protein [Oryza sativa Japonica G	0.887	0.959	0.529	5e-46
30686741	163	RNA-directed DNA methylation 1 protein [	0.791	0.907	0.597	6e-46

>gi|224099821|ref|XP_002311634.1| predicted protein [Populus trichocarpa] gi|222851454|gb|EEE89001.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 139/171 (81%), Gaps = 3/171 (1%)

Query: 1   MKRPMPWGDQVDVISSDDSASDGDA---DNGLDGRQSSNDMTIDQPTKELTSEGSLFRRA 57
           MKR +PW D VDVISSD+S+S       ++GLDG++ SN +TIDQP KE TSEG L RRA
Sbjct: 1   MKRTIPWTDPVDVISSDESSSSDSDIELNDGLDGQRLSNYVTIDQPIKETTSEGVLIRRA 60

Query: 58  EMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTED 117
           EMYQ+YM+ +PIP QR S IPF+SW GLG SIKQLY+QPLHYLTNI L +WDQ R G+ED
Sbjct: 61  EMYQDYMRHIPIPVQRGSAIPFSSWAGLGKSIKQLYQQPLHYLTNILLNKWDQQRIGSED 120

Query: 118 EHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           EH PLD ++HPCKAEAT+WL+EEVHR TS HHH+AK+W SDPMH+ F+DSI
Sbjct: 121 EHTPLDIMIHPCKAEATIWLVEEVHRRTSSHHHVAKIWQSDPMHHAFVDSI 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552097|ref|XP_002517093.1| conserved hypothetical protein [Ricinus communis] gi|223543728|gb|EEF45256.1| conserved hypothetical protein [Ricinus communis]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/171 (67%), Positives = 135/171 (78%), Gaps = 3/171 (1%)

Query: 1   MKRPMPWGDQVDVISSDDS-ASDGD--ADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRA 57
           MKR MPW +Q+DVISSD+S +SDGD   D  LDG + S  +TI Q  KE+TSE  L RRA
Sbjct: 1   MKRTMPWNEQIDVISSDESTSSDGDMETDVVLDGHKPSPRITISQSLKEITSEDVLIRRA 60

Query: 58  EMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTED 117
           EMYQ+YM+QLPIP    S+IPF+SWVGLG SIKQLY QPLHYLTNI LKQWDQLRF   D
Sbjct: 61  EMYQDYMRQLPIPVHHGSVIPFSSWVGLGKSIKQLYGQPLHYLTNILLKQWDQLRFDNGD 120

Query: 118 EHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           E K LD ++HPCKAEA+VWL+EE+HR TS  H++AKLWL DPMH+ F+DSI
Sbjct: 121 EQKSLDIVIHPCKAEASVWLVEEIHRCTSSPHYVAKLWLLDPMHHAFVDSI 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432680|ref|XP_004134127.1| PREDICTED: protein RDM1-like isoform 1 [Cucumis sativus] gi|449432682|ref|XP_004134128.1| PREDICTED: protein RDM1-like isoform 2 [Cucumis sativus] gi|449504162|ref|XP_004162269.1| PREDICTED: protein RDM1-like isoform 1 [Cucumis sativus] gi|449504166|ref|XP_004162270.1| PREDICTED: protein RDM1-like isoform 2 [Cucumis sativus]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 138/172 (80%), Gaps = 6/172 (3%)

Query: 1   MKRPMPWGDQVDVISSDDSASD----GDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRR 56
           MKRPMPW +QVD+ISS +S+S        ++G + + S +D  I  P KE+TSEG L +R
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKI--PAKEMTSEGMLMKR 58

Query: 57  AEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTE 116
           AEMYQEYMKQ+ IP QR S+IPFT+W+GLG SIKQLY QPLHYLTNI LKQWDQLR G+ 
Sbjct: 59  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSA 118

Query: 117 DEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           DE+KPLD+++HP KAEATVWL+EE+HR TS HHH+AKLWLSDPMH  ++DSI
Sbjct: 119 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSI 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737087|emb|CBI26288.3| unnamed protein product [Vitis vinifera]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 136/171 (79%), Gaps = 4/171 (2%)

Query: 1   MKRPMPWGDQVDVISSDDSASDG---DADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRA 57
           MKR  PW +QVDVISSD+S+S     + DNG   ++S  D+TIDQP ++   E  + RRA
Sbjct: 1   MKRAFPWNEQVDVISSDESSSSNPGVEVDNGSVDKKSM-DITIDQPARQEPFEDVVIRRA 59

Query: 58  EMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTED 117
           EMYQEYMKQ+PIP +R S+IPF +W+GL  SIKQLY QPLHYLTNI +KQWDQLR G++D
Sbjct: 60  EMYQEYMKQIPIPARRGSLIPFDTWMGLAKSIKQLYGQPLHYLTNILVKQWDQLRIGSKD 119

Query: 118 EHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           E++ LDS++HP KAEA++WLIEEVHR T+  HH+AKLWLSDPMHY F+DSI
Sbjct: 120 ENRSLDSIIHPSKAEASIWLIEEVHRQTTSPHHMAKLWLSDPMHYAFVDSI 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477543|ref|XP_002279112.2| PREDICTED: protein RDM1 [Vitis vinifera]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 111/132 (84%)

Query: 37  DMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQP 96
           D+TIDQP ++   E  + RRAEMYQEYMKQ+PIP +R S+IPF +W+GL  SIKQLY QP
Sbjct: 2   DITIDQPARQEPFEDVVIRRAEMYQEYMKQIPIPARRGSLIPFDTWMGLAKSIKQLYGQP 61

Query: 97  LHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWL 156
           LHYLTNI +KQWDQLR G++DE++ LDS++HP KAEA++WLIEEVHR T+  HH+AKLWL
Sbjct: 62  LHYLTNILVKQWDQLRIGSKDENRSLDSIIHPSKAEASIWLIEEVHRQTTSPHHMAKLWL 121

Query: 157 SDPMHYVFIDSI 168
           SDPMHY F+DSI
Sbjct: 122 SDPMHYAFVDSI 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722067|ref|NP_001237231.1| uncharacterized protein LOC100500129 [Glycine max] gi|255629410|gb|ACU15051.1| unknown [Glycine max]

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 120/168 (71%), Gaps = 11/168 (6%)

Query: 1   MKRPMPWGDQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMY 60
           MKR  PW +Q+DV SS    S              N +TI     +  S+ +L RRAEMY
Sbjct: 1   MKRSFPWENQIDVSSSSSPNS-----------LRPNPLTIPNSPIDTKSQDALIRRAEMY 49

Query: 61  QEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHK 120
           Q+YMKQ+PIP  R ++IPFTSW+GLG S+KQ+Y QPLHYLTNI LKQWDQLR G+EDE+K
Sbjct: 50  QDYMKQIPIPNHRGTMIPFTSWMGLGRSMKQIYGQPLHYLTNILLKQWDQLRIGSEDEYK 109

Query: 121 PLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           PLD++VHP KAEAT+WLIEE+HR TS H HLA LW  DPM+  F+DSI
Sbjct: 110 PLDNIVHPHKAEATIWLIEEIHRQTSSHFHLASLWKVDPMYNGFVDSI 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830986|ref|XP_002883375.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329215|gb|EFH59634.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/150 (60%), Positives = 113/150 (75%), Gaps = 2/150 (1%)

Query: 19  SASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIP 78
           SA  G +D  +D   S     +D   +++  EGSL RRAEMYQEYMKQ+PIPT R S+IP
Sbjct: 12  SADSGSSD--VDAEISDGFSPLDNSHRDVADEGSLLRRAEMYQEYMKQVPIPTNRGSLIP 69

Query: 79  FTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLI 138
           FTSWVGL  S+KQLY QPLHYLTN+ L++WDQ RFGT+ E + LDS+ HP KAEAT+WL+
Sbjct: 70  FTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQSLDSIFHPSKAEATIWLV 129

Query: 139 EEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           EE+HR+TS H H+A LW SDPM++ FID I
Sbjct: 130 EEIHRITSSHLHIASLWGSDPMYHSFIDPI 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480933|ref|XP_003610752.1| hypothetical protein MTR_5g006610 [Medicago truncatula] gi|355512087|gb|AES93710.1| hypothetical protein MTR_5g006610 [Medicago truncatula] gi|388497794|gb|AFK36963.1| unknown [Medicago truncatula]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 121/171 (70%), Gaps = 3/171 (1%)

Query: 1   MKRPMPWG-DQVDVISSDDSASDGDADNGLDGRQSSNDMTID--QPTKELTSEGSLFRRA 57
           MKRP PW  D++DV  S  S    +    +     S  + I    P+ ++ S  +L RRA
Sbjct: 1   MKRPFPWDEDEIDVSDSSSSDDSPNETPNVATVLPSIHIHIPLPNPSSDVNSLDALTRRA 60

Query: 58  EMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTED 117
            MYQ+YMK +PIP+ R S+IPFTSW+GLG SIKQLY QPLHYLTNI LKQWDQLR G+ED
Sbjct: 61  AMYQDYMKHIPIPSSRGSLIPFTSWMGLGRSIKQLYGQPLHYLTNILLKQWDQLRIGSED 120

Query: 118 EHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           E+ PLD ++HP KAE+T+WL+EE+HR TS H H+A LW  DPM++ FIDSI
Sbjct: 121 EYTPLDDIIHPRKAESTIWLMEEIHRQTSSHFHIADLWKKDPMYHGFIDSI 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51535316|dbj|BAD38576.1| unknown protein [Oryza sativa Japonica Group] gi|51535714|dbj|BAD37732.1| unknown protein [Oryza sativa Japonica Group] gi|215701196|dbj|BAG92620.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 120/168 (71%), Gaps = 2/168 (1%)

Query: 1   MKRPMPWGDQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMY 60
           MKR  PW + ++V S D  +SD D + G    +  N   +   TK    +G+L R+AEMY
Sbjct: 1   MKRAAPWEEPLEVSSDDSLSSDSDDEAGKG--KGDNAFGLPNSTKAAAPDGALIRKAEMY 58

Query: 61  QEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHK 120
           QEYMK +P+P  R S+IP T+W+GLG S+KQLY+QPLHYLTN+ LKQWDQ R G++DEH+
Sbjct: 59  QEYMKHIPVPAHRGSVIPCTTWLGLGRSVKQLYKQPLHYLTNVLLKQWDQQRVGSDDEHR 118

Query: 121 PLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           PLD+++HP KAEA +W+ EEVHRLT+   HLA LW S PM++ +ID +
Sbjct: 119 PLDAIIHPVKAEALIWITEEVHRLTTSSQHLASLWASAPMYHAYIDPV 166

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686741|ref|NP_188907.2| RNA-directed DNA methylation 1 protein [Arabidopsis thaliana] gi|73921107|sp|Q9LUJ3.1|RDM1_ARATH RecName: Full=Protein RDM1; AltName: Full=Protein RNA-directed DNA methylation 1 gi|9279686|dbj|BAB01243.1| unnamed protein product [Arabidopsis thaliana] gi|332643143|gb|AEE76664.1| RNA-directed DNA methylation 1 protein [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 115/154 (74%), Gaps = 6/154 (3%)

Query: 15  SSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRS 74
           S D  +SD DA+   DG        +D   +++  EGSL RRAEMYQ+YMKQ+PIPT R 
Sbjct: 12  SGDSGSSDVDAEIS-DGFSP-----LDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRG 65

Query: 75  SIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEAT 134
           S+IPFTSWVGL  S+KQLY QPLHYLTN+ L++WDQ RFGT+ E + LDS++HP KAEAT
Sbjct: 66  SLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEAT 125

Query: 135 VWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           +WL+EE+HRLT  H H+A LW SDPM++ FID I
Sbjct: 126 IWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2094399	163	RDM1 "AT3G22680" [Arabidopsis	0.689	0.791	0.651	1.6e-45

TAIR|locus:2094399 RDM1 "AT3G22680" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 84/129 (65%), Positives = 105/129 (81%)

Query:    40 IDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHY 99
             +D   +++  EGSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHY
Sbjct:    31 LDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHY 90

Query:   100 LTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDP 159
             LTN+ L++WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDP
Sbjct:    91 LTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDP 150

Query:   160 MHYVFIDSI 168
             M++ FID I
Sbjct:   151 MYHSFIDPI 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       150   0.00087  104 3  11 22  0.46    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  168 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.36u 0.23s 15.59t   Elapsed:  00:00:01
  Total cpu time:  15.36u 0.23s 15.59t   Elapsed:  00:00:01
  Start:  Tue May 21 00:39:58 2013   End:  Tue May 21 00:39:59 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006306 "DNA methylation" evidence=IGI;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0044030 "regulation of DNA methylation" evidence=IMP

GO:0070918 "production of small RNA involved in gene silencing by RNA" evidence=IMP

GO:0031047 "gene silencing by RNA" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LUJ3	RDM1_ARATH	No assigned EC number	0.5974	0.7914	0.9079	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020032001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (169 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
pfam09187	119	pfam09187, DUF1950, Domain of unknown function(DUF	2e-62

>gnl|CDD|192224 pfam09187, DUF1950, Domain of unknown function(DUF1950)

 Score =  188 bits (479), Expect = 2e-62
 Identities = 77/116 (66%), Positives = 98/116 (84%)

Query: 53  LFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLR 112
           L R AEMYQ+YMKQLPIP++R S IP T+W GLGNS+KQLY QPLHYLTN+ L++WDQ R
Sbjct: 1   LLRPAEMYQQYMKQLPIPSKRGSHIPNTTWRGLGNSMKQLYGQPLHYLTNVLLQRWDQSR 60

Query: 113 FGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
            G+++EHKPLDS++HP KAEAT+W++EE HRLT+   H+A LW+SDPM++ FID I
Sbjct: 61  IGSDNEHKPLDSIIHPSKAEATIWVVEEFHRLTTSTQHVATLWISDPMYHAFIDPI 116

Members of this family pertain to a set of functionally uncharacterized hypothetical eukaryotic proteins. Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PF09187	119	DUF1950: Domain of unknown function(DUF1950); Inte	100.0

>PF09187 DUF1950: Domain of unknown function(DUF1950); InterPro: IPR015270 Members of this family are a set of functionally uncharacterised hypothetical eukaryotic proteins []

Probab=100.00  E-value=2.2e-89  Score=535.31  Aligned_cols=118  Identities=76%  Similarity=1.303  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHHHHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccchh
Q 029825           53 LFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAE  132 (187)
Q Consensus        53 liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQPLHYLTnillkqWDq~RiGs~dE~kpLd~IIhP~kAE  132 (187)
                      |||||||||+||||||||++|||+|||+||+|||||||||||||||||||+|||||||+||||+||+||||+||||||||
T Consensus         1 liRrAemYQ~yMk~iPIP~~rgs~Ip~~sW~gL~~SiKqlYgQPLHYLTn~llkqWDq~RiGs~dE~kpLd~IIhp~kAe   80 (119)
T PF09187_consen    1 LIRRAEMYQDYMKQIPIPSSRGSVIPFTSWMGLGRSIKQLYGQPLHYLTNILLKQWDQSRIGSEDEHKPLDAIIHPCKAE   80 (119)
T ss_dssp             THHHHHHHHHHHHTS---SSSSS----SSHHHHHHHHHHHHT----HHHHHHHHHHHHTTTT-SS----GGGTS-HHHHH
T ss_pred             CcchHHHHHHHHHcCCCCCCCCCccccchHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccCCccccCcHHHhcChhhHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhccchHHHHHHHhhCCcccccccccCC
Q 029825          133 ATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITL  170 (187)
Q Consensus       133 atIW~~EevHR~tsS~~hlA~LW~~DPmy~~fiD~if~  170 (187)
                      ||||+||||||+||||+|||+||++|||||+|||+|||
T Consensus        81 atIW~vEevHR~tsS~~hlA~LW~~DPmyh~fvD~ifp  118 (119)
T PF09187_consen   81 ATIWLVEEVHRQTSSHQHLAKLWLSDPMYHAFVDSIFP  118 (119)
T ss_dssp             HHHHHHHHHHHHS--HHHHHHHHHT-TTGGGGS--S--
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCchhhhhccccCC
Confidence            99999999999999999999999999999999999998

; PDB: 2Q3T_A 1VK5_A 3GAN_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
1vk5_A	157	X-Ray Structure Of Gene Product From Arabidopsis Th		5e-48
3gan_A	157	Crystal Structure Of Gene Product From Arabidopsis		4e-45

>pdb|1VK5|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g22680 Length = 157

Iteration: 1
 Score =  186 bits (473), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 105/129 (81%)
Query: 40  IDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHY 99
           +D   +++  EGSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHY
Sbjct: 25  LDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHY 84
Query: 100 LTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDP 159
           LTN+ L++WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDP
Sbjct: 85  LTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDP 144
Query: 160 MHYVFIDSI 168
           M++ FID I
Sbjct: 145 MYHSFIDPI 153

>pdb|3GAN|A Chain A, Crystal Structure Of Gene Product From Arabidopsis Thaliana At3g22680 With Bound Suramin Length = 157

Iteration: 1
 Score =  177 bits (448), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 100/129 (77%)
Query: 40  IDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHY 99
           +D   +++  EGSL RRAE YQ+Y KQ+PIPT R S+IPFTSWVGL  S KQLY QPLHY
Sbjct: 25  LDTSHRDVADEGSLLRRAEXYQDYXKQVPIPTNRGSLIPFTSWVGLSISXKQLYGQPLHY 84
Query: 100 LTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDP 159
           LTN+ L++WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H A LW SDP
Sbjct: 85  LTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHXALLWRSDP 144
Query: 160 MHYVFIDSI 168
            ++ FID I
Sbjct: 145 XYHSFIDPI 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1vk5_A	157	Expressed protein; structural genomics, unknown fu	3e-69

>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A* Length = 157

 Score =  206 bits (526), Expect = 3e-69
 Identities = 87/148 (58%), Positives = 110/148 (74%)

Query: 21  SDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFT 80
           S     + +D   S     +D   +++  EGSL RRAEMYQ+YMKQ+PIPT R S+IPFT
Sbjct: 6   SGDSGSSDVDAEISDGFSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFT 65

Query: 81  SWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEE 140
           SWVGL  S+KQLY QPLHYLTN+ L++WDQ RFGT+ E + LDS++HP KAEAT+WL+EE
Sbjct: 66  SWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEE 125

Query: 141 VHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           +HRLT  H H+A LW SDPM++ FID I
Sbjct: 126 IHRLTPSHLHMALLWRSDPMYHSFIDPI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
1vk5_A	157	Expressed protein; structural genomics, unknown fu	100.0

>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*

Probab=100.00  E-value=3.6e-98  Score=603.65  Aligned_cols=152  Identities=59%  Similarity=1.020  Sum_probs=120.4

Q ss_pred             ccccCCCCCC---CCCCCCCCCCCCCCCccccCCCCcccCchhhHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHH
Q 029825           12 DVISSDDSAS---DGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNS   88 (187)
Q Consensus        12 DviSSD~SsS---D~Ea~nGk~~~~~~n~~~i~~~~~~~~~~~~liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~S   88 (187)
                      ||||||||+|   |+|++||        +|+||||.|++++||+|||||||||+||||||||++||++|||+||+|||||
T Consensus         2 dv~sS~~s~Ssd~d~e~~~g--------~~~i~~s~k~~~~e~~liRrAEmYQ~YMK~iPIP~~~~s~Ipf~sW~gL~~S   73 (157)
T 1vk5_A            2 ELRPSGDSGSSDVDAEISDG--------FSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSIS   73 (157)
T ss_dssp             ------------------------------------------CTTHHHHHHHHHHHHTSCCCSSCCSCCCCSSHHHHHHH
T ss_pred             CcccCCCCccCCccccccCC--------cccCCCcccccCcchhhhhHHHHHHHHHHhCCCCcccCCcccchhHHHHHHH
Confidence            7889999887   8899998        4999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccchhhhHHHHHHHHhhccchHHHHHHHhhCCccccccccc
Q 029825           89 IKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI  168 (187)
Q Consensus        89 iKqlYgQPLHYLTnillkqWDq~RiGs~dE~kpLd~IIhP~kAEatIW~~EevHR~tsS~~hlA~LW~~DPmy~~fiD~i  168 (187)
                      ||||||||||||||+|||||||+||||+||+||||+||||||||||||+||||||+||||+|||+||++|||||+|||+|
T Consensus        74 iKQlY~QPLHYLTN~LLkqWDQ~RiGs~dE~kpLd~IIhP~kAeatIW~vEE~HR~tsS~~hla~LW~sDPmyhafiD~i  153 (157)
T 1vk5_A           74 MKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI  153 (157)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCGGGTSCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTCTTGGGGSCCC
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHhhcCCccccCchhhhccchhhhhHHHHHHHHHhhcCChHHHHHHHhcCchhhhhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 029825          169 TLN  171 (187)
Q Consensus       169 f~~  171 (187)
                      ||.
T Consensus       154 fp~  156 (157)
T 1vk5_A          154 FPE  156 (157)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1vk5a_	121	a.220.1.1 (A:) Hypothetical protein At3g22680 {Tha	1e-70

>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 121

class: All alpha proteins
fold: Hypothetical protein At3g22680
superfamily: Hypothetical protein At3g22680
family: Hypothetical protein At3g22680
domain: Hypothetical protein At3g22680
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  207 bits (529), Expect = 1e-70
 Identities = 82/118 (69%), Positives = 99/118 (83%)

Query: 51  GSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQ 110
           GSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L++WDQ
Sbjct: 1   GSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQ 60

Query: 111 LRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
            RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDPM++ FID I
Sbjct: 61  SRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1vk5a_	121	Hypothetical protein At3g22680 {Thale-cress (Arabi	100.0

>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: Hypothetical protein At3g22680
superfamily: Hypothetical protein At3g22680
family: Hypothetical protein At3g22680
domain: Hypothetical protein At3g22680
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-88  Score=528.79  Aligned_cols=121  Identities=68%  Similarity=1.158  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHHHHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccc
Q 029825           51 GSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCK  130 (187)
Q Consensus        51 ~~liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQPLHYLTnillkqWDq~RiGs~dE~kpLd~IIhP~k  130 (187)
                      ++|||||||||+||||||||++|||+|||+||+|||+|||||||||||||||+|||||||+||||+||+||||+||||||
T Consensus         1 ~~l~R~AemYQ~yMk~iPIP~~~~s~Ipf~tW~gL~~SiKQlY~QPLHYLTn~lLk~WDq~Rigs~dE~k~ld~iIhP~k   80 (121)
T d1vk5a_           1 GSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTK   80 (121)
T ss_dssp             CTTHHHHHHHHHHHHTSCCCSSCCSCCCCSSHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCGGGTSCHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCCcccCCcccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccCCccccCchhhhccchh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhccchHHHHHHHhhCCcccccccccCCC
Q 029825          131 AEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLN  171 (187)
Q Consensus       131 AEatIW~~EevHR~tsS~~hlA~LW~~DPmy~~fiD~if~~  171 (187)
                      ||||||+||||||+||||+|||+||++|||||+|||+|||.
T Consensus        81 AeatIW~vEe~HR~tsS~~h~A~LW~sDPm~hafiD~ifp~  121 (121)
T d1vk5a_          81 AEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE  121 (121)
T ss_dssp             HHHHHHHHHHHHHHSCCHHHHHHHHHTCTTGGGGSCCCCCC
T ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHhhccccCCC
Confidence            99999999999999999999999999999999999999984