Citrus Sinensis ID: 029828

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEccccEEEEEccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEccccccccHEEEEEEcccccEEEEEccccccccccccEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mssfeqrvqpFDKRYQYLMFAAEPYEiiafkvpsteidkstpkffshwdpdskmfTLQLYfkskpvegnkpqaapaangavapppppppqgpppgvsagnaprappppmtgtlppppppmangprpmppggappapppppggsgtmanftpgtqvgrpptmpppppqgyggqqmpirppppppnmgq
Flexible Loop (DISEMBL)
MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKStpkffshwdpdSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ
Low Complexity Region (SEG)
MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKpqaapaangavapppppppqgpppgvsagnaprappppmtgtlppppppmangprpmppggappapppppggSGTMANFTPGTQVGRpptmpppppqgyggqqmpIRppppppNMGQ
Disordered region (IsUnstruct)
**********FDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYF******************************************************************************************************************************
Disordered Region (DISOPRED)
**SFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYF******************************************************************************************************************************
Disordered Region (DISEMBL)
MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ
Disordered Region (DISPRO)
***FEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKP***************VAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPP********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q15428	464	Splicing factor 3A subuni	yes	no	0.331	0.133	0.612	1e-19
Q6AXT8	471	Splicing factor 3A subuni	yes	no	0.331	0.131	0.612	1e-19
A5PJN8	477	Splicing factor 3A subuni	yes	no	0.331	0.129	0.612	1e-19
Q54B65	215	Splicing factor 3A subuni	yes	no	0.326	0.283	0.661	8e-19
Q62203	475	Splicing factor 3A subuni	yes	no	0.278	0.109	0.564	2e-13

>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 52/62 (83%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct: 152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query: 61  FK 62
           FK
Sbjct: 212 FK 213

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.
Homo sapiens (taxid: 9606)

>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 52/62 (83%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct: 152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query: 61  FK 62
           FK
Sbjct: 212 FK 213

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Rattus norvegicus (taxid: 10116)

>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 52/62 (83%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct: 152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query: 61  FK 62
           FK
Sbjct: 212 FK 213

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Bos taurus (taxid: 9913)

>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 53/65 (81%), Gaps = 4/65 (6%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKST---PKFFSHWDPDSKMFTL 57
           MS+FEQRV+  +K YQYL+FAAEPYE IAFK+P+ EID++T    KFF+HWD + K FTL
Sbjct: 151 MSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWDRN-KTFTL 209

Query: 58  QLYFK 62
           QLYFK
Sbjct: 210 QLYFK 214

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 10/62 (16%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF          F LQ +
Sbjct: 152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKF----------FFLQFH 201

Query: 61  FK 62
           FK
Sbjct: 202 FK 203


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.138    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,261,916
Number of Sequences: 539616
Number of extensions: 7813603
Number of successful extensions: 219973
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3078
Number of HSP's successfully gapped in prelim test: 3446
Number of HSP's that attempted gapping in prelim test: 44596
Number of HSP's gapped (non-prelim): 58075
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
224140247	334	predicted protein [Populus trichocarpa]	0.973	0.544	0.705	5e-41
255556836	327	Splicing factor 3A subunit, putative [Ri	0.909	0.519	0.736	4e-40
356554761	349	PREDICTED: splicing factor 3A subunit 2-	0.951	0.510	0.650	1e-39
297739988	241	unnamed protein product [Vitis vinifera]	0.459	0.356	0.872	3e-37
449440151	341	PREDICTED: splicing factor 3A subunit 2-	0.839	0.460	0.759	2e-36
449501030	341	PREDICTED: splicing factor 3A subunit 2-	0.839	0.460	0.759	2e-36
225441145	357	PREDICTED: splicing factor 3A subunit 2	0.438	0.229	0.890	2e-36
356550634	350	PREDICTED: splicing factor 3A subunit 2-	0.433	0.231	0.864	1e-34
297826701	276	hydroxyproline-rich glycoprotein family	0.417	0.282	0.837	2e-32
262192723	253	hypothetical protein [Nicotiana tabacum]	0.411	0.304	0.805	4e-32

>gi|224140247|ref|XP_002323495.1| predicted protein [Populus trichocarpa] gi|222868125|gb|EEF05256.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 145/190 (76%), Gaps = 8/190 (4%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSS+EQR++  DKR+QYL+F+AEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY
Sbjct: 150 MSSYEQRIEANDKRFQYLLFSAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 209

Query: 61  FKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 120
           FK KP E NKPQ+  AAN  V   PPPP         AG+ P  PP P +   PPPPP M
Sbjct: 210 FKLKPPEANKPQSVAAANSTVPSQPPPPLPPQGL--PAGSRPPPPPMPASLP-PPPPPAM 266

Query: 121 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQM---PIR 177
           ANGPRPMPPGGAPPAPPPPPGGSG M NFTPGTQ GRP +M   PP G+ GQQM    IR
Sbjct: 267 ANGPRPMPPGGAPPAPPPPPGGSGAMVNFTPGTQAGRPSSM--LPPHGFLGQQMQGQTIR 324

Query: 178 PPPPPPNMGQ 187
           PP  PPNMGQ
Sbjct: 325 PPLLPPNMGQ 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556836|ref|XP_002519451.1| Splicing factor 3A subunit, putative [Ricinus communis] gi|223541314|gb|EEF42865.1| Splicing factor 3A subunit, putative [Ricinus communis]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/182 (73%), Positives = 139/182 (76%), Gaps = 12/182 (6%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSSFEQR+QP+DKRYQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY
Sbjct: 150 MSSFEQRMQPYDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 209

Query: 61  FKSKPVEGNKPQAAPAANGAVAP--------PPPPPPQGPPPGVSAGNAPRAPPPPMTGT 112
           FK+KP E NK QA PA NG  AP        PPP  P  PPP          PPPP    
Sbjct: 210 FKTKPPEANKSQAPPAPNGVAAPGVPPRSLPPPPQAPPPPPPPPQGLPPGSRPPPPPPQG 269

Query: 113 LPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQ 172
             PPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPG QVGRPP     PPQG+  Q
Sbjct: 270 SLPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGAQVGRPPM----PPQGFSTQ 325

Query: 173 QM 174
           QM
Sbjct: 326 QM 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554761|ref|XP_003545711.1| PREDICTED: splicing factor 3A subunit 2-like [Glycine max]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/209 (65%), Positives = 145/209 (69%), Gaps = 31/209 (14%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSS+EQRVQPFDKRYQYL+FAAEPYEI+AFKVPSTEIDKSTP FFSHWDPDSKMFTLQLY
Sbjct: 150 MSSYEQRVQPFDKRYQYLLFAAEPYEIVAFKVPSTEIDKSTPNFFSHWDPDSKMFTLQLY 209

Query: 61  FKSKPVEGNKPQAAPAANGAV----------------APPPPPPPQGPPPGVSAGNAPRA 104
           FKSKP E NKPQ A  ANG                   PPPPPPPQG PPG    N PRA
Sbjct: 210 FKSKPPEANKPQPASTANGTAPSGVPPRPLPPPPQGPLPPPPPPPQGLPPGAPMANPPRA 269

Query: 105 PPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPP 164
           PPPPM G++PPPP    NGPRP P GG P  PPPPP  SGT + F  G    RPP+MPPP
Sbjct: 270 PPPPMPGSMPPPPMAATNGPRPAPSGGMPSIPPPPPVASGT-SGFNMG---ARPPSMPPP 325

Query: 165 ------PPQGYGGQQMPIRPPPPPPNMGQ 187
                 P QG+G     +R PPPPPNMGQ
Sbjct: 326 QGFPSQPMQGHG-----VRLPPPPPNMGQ 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739988|emb|CBI30170.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 77/86 (89%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSSFEQRVQ FDKRYQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY
Sbjct: 150 MSSFEQRVQSFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 209

Query: 61  FKSKPVEGNKPQAAPAANGAVAPPPP 86
           FK+KP E NKPQ A AANG  AP  P
Sbjct: 210 FKTKPPEANKPQPASAANGTTAPGTP 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440151|ref|XP_004137848.1| PREDICTED: splicing factor 3A subunit 2-like [Cucumis sativus]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 131/166 (78%), Gaps = 9/166 (5%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSS+EQRVQPFDKRYQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY
Sbjct: 150 MSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 209

Query: 61  FKSKPVEGNKPQAAPAANGAV--------APPPPPPPQGPPPGVSAGNAPRAPPPPMTGT 112
           FKSKP E NKP   PAANG V         PPPP  P  PPP    G  PR PPPPM G+
Sbjct: 210 FKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGS 269

Query: 113 LPPPPPPMAN-GPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGR 157
           LPPPP  MAN  PRPMPPGGAPP PPPPP G+ TMANFTPGTQ+ R
Sbjct: 270 LPPPPSVMANGPPRPMPPGGAPPIPPPPPIGNNTMANFTPGTQMNR 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501030|ref|XP_004161259.1| PREDICTED: splicing factor 3A subunit 2-like [Cucumis sativus]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 131/166 (78%), Gaps = 9/166 (5%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSS+EQRVQPFDKRYQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY
Sbjct: 150 MSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 209

Query: 61  FKSKPVEGNKPQAAPAANGAV--------APPPPPPPQGPPPGVSAGNAPRAPPPPMTGT 112
           FKSKP E NKP   PAANG V         PPPP  P  PPP    G  PR PPPPM G+
Sbjct: 210 FKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGS 269

Query: 113 LPPPPPPMAN-GPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGR 157
           LPPPP  MAN  PRPMPPGGAPP PPPPP G+ TMANFTPGTQ+ R
Sbjct: 270 LPPPPSVMANGPPRPMPPGGAPPIPPPPPIGNNTMANFTPGTQMDR 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441145|ref|XP_002266748.1| PREDICTED: splicing factor 3A subunit 2 [Vitis vinifera]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/82 (89%), Positives = 75/82 (91%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSSFEQRVQ FDKRYQYL+FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY
Sbjct: 150 MSSFEQRVQSFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 209

Query: 61  FKSKPVEGNKPQAAPAANGAVA 82
           FK+KP E NKPQ A AANG  A
Sbjct: 210 FKTKPPEANKPQPASAANGTTA 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550634|ref|XP_003543690.1| PREDICTED: splicing factor 3A subunit 2-like [Glycine max]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 73/81 (90%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSS+EQRVQPFDK YQYL+FAAEPYEI+AFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY
Sbjct: 150 MSSYEQRVQPFDKSYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 209

Query: 61  FKSKPVEGNKPQAAPAANGAV 81
           FKSKP E NKPQ A  ANG  
Sbjct: 210 FKSKPPEANKPQPATTANGTA 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826701|ref|XP_002881233.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi|297327072|gb|EFH57492.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 75/80 (93%), Gaps = 2/80 (2%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSS+EQ+VQP+DKRYQYL+FAAEPYEIIAFKVPSTE+DKSTPKFFSHWDPDSKMFTLQ+Y
Sbjct: 150 MSSYEQKVQPYDKRYQYLLFAAEPYEIIAFKVPSTEVDKSTPKFFSHWDPDSKMFTLQVY 209

Query: 61  FK-SKPVEGNKPQAAPAANG 79
           FK +KP E NKPQ+A  ANG
Sbjct: 210 FKPTKP-EQNKPQSAVGANG 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262192723|gb|ACY30431.1| hypothetical protein [Nicotiana tabacum]

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 69/77 (89%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MSSFEQ++QPFDKRYQ+L+FAAEPYEII+FKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY
Sbjct: 160 MSSFEQKIQPFDKRYQFLLFAAEPYEIISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 219

Query: 61  FKSKPVEGNKPQAAPAA 77
           FK+KP E NK      +
Sbjct: 220 FKTKPPETNKTTTCSCS 236

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2060279	277	AT2G32600 [Arabidopsis thalian	0.374	0.252	0.828	1.2e-28
ZFIN|ZDB-GENE-040426-897	278	sf3a2 "splicing factor 3a, sub	0.331	0.223	0.612	3.6e-18
DICTYBASE|DDB_G0293876	215	sf3a2 "splicing factor 3A subu	0.326	0.283	0.676	9.5e-18
FB|FBgn0036314	264	CG10754 [Drosophila melanogast	0.347	0.246	0.569	9.5e-18
UNIPROTKB|G3MW14	411	SF3A2 "Splicing factor 3A subu	0.347	0.158	0.606	1.6e-17
UNIPROTKB|Q15428	464	SF3A2 "Splicing factor 3A subu	0.347	0.140	0.606	2.3e-17
RGD|1308627	471	Sf3a2 "splicing factor 3a, sub	0.347	0.138	0.606	2.4e-17
UNIPROTKB|A5PJN8	477	SF3A2 "Splicing factor 3A subu	0.347	0.136	0.606	2.5e-17
UNIPROTKB|J9P6E2	478	SF3A2 "Uncharacterized protein	0.347	0.135	0.606	2.5e-17
WB|WBGene00008683	222	repo-1 [Caenorhabditis elegans	0.326	0.274	0.612	8.6e-17

TAIR|locus:2060279 AT2G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 58/70 (82%), Positives = 64/70 (91%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MSS+EQ+VQP+DK YQYL+FAAEPYEIIAFKVPSTE+DKSTPKFFSHWDPDSKMFTLQ+Y
Sbjct:   150 MSSYEQKVQPYDKSYQYLLFAAEPYEIIAFKVPSTEVDKSTPKFFSHWDPDSKMFTLQVY 209

Query:    61 FKSKPVEGNK 70
             FK    E NK
Sbjct:   210 FKPTKPEPNK 219

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051604 "protein maturation" evidence=RCA

ZFIN|ZDB-GENE-040426-897 sf3a2 "splicing factor 3a, subunit 2" [Danio rerio (taxid:7955)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 38/62 (61%), Positives = 53/62 (85%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MS++EQR++P D+R+QYL+FAAEPYE IAFKVPS EIDK+  +F++HW+ ++K F LQ +
Sbjct:   152 MSAYEQRIEPPDRRWQYLLFAAEPYETIAFKVPSREIDKAETRFWTHWNRETKQFFLQFH 211

Query:    61 FK 62
             FK
Sbjct:   212 FK 213

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0293876 sf3a2 "splicing factor 3A subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKST-P--KFFSHWDPDSKMFTL 57
             MS+FEQRV+  +K YQYL+FAAEPYE IAFK+P+ EID++T P  KFF+HWD + K FTL
Sbjct:   151 MSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWDRN-KTFTL 209

Query:    58 QLYFK 62
             QLYFK
Sbjct:   210 QLYFK 214

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA;ISS

GO:0005681 "spliceosomal complex" evidence=IEA;ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0000389 "mRNA 3'-splice site recognition" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0036314 CG10754 [Drosophila melanogaster (taxid:7227)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 37/65 (56%), Positives = 53/65 (81%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MS++EQ+++P D+++QYL+FAAEPYE I FKVPS E++KS  KF++HW+ D+K F LQ  
Sbjct:   153 MSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSREVEKSEGKFWTHWNRDTKQFFLQFA 212

Query:    61 FKSKP 65
             FK +P
Sbjct:   213 FKFEP 217

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005686 "U2 snRNP" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|G3MW14 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct:   152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query:    61 FK-SKP 65
             FK  KP
Sbjct:   212 FKMEKP 217

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q15428 SF3A2 "Splicing factor 3A subunit 2" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct:   152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query:    61 FK-SKP 65
             FK  KP
Sbjct:   212 FKMEKP 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0000389 "mRNA 3'-splice site recognition" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

RGD|1308627 Sf3a2 "splicing factor 3a, subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 219 (82.2 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct:   152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query:    61 FK-SKP 65
             FK  KP
Sbjct:   212 FKMEKP 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|A5PJN8 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct:   152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query:    61 FK-SKP 65
             FK  KP
Sbjct:   212 FKMEKP 217

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P6E2 SF3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct:   152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query:    61 FK-SKP 65
             FK  KP
Sbjct:   212 FKMEKP 217

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

WB|WBGene00008683 repo-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 38/62 (61%), Positives = 51/62 (82%)

Query:     1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
             MS++EQ++QP DKR+QYL+FAAEPYE I FK+PS E+DKS  KF++ W+ D+K F LQ+ 
Sbjct:   152 MSAYEQKIQPPDKRWQYLLFAAEPYETIGFKIPSREVDKSE-KFWTMWNKDTKQFFLQVA 210

Query:    61 FK 62
             FK
Sbjct:   211 FK 212

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0025001901	hypothetical protein (334 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XIII3357	hypothetical protein (820 aa)					•	•	•		0.636
	eugene3.00170116	hypothetical protein (1268 aa)					•	•	•		0.613
	eugene3.00440042	hypothetical protein (2357 aa)					•	•	•		0.572
	eugene3.00120183	hypothetical protein (509 aa)					•	•	•		0.471
	gw1.XV.452.1	hypothetical protein (495 aa)					•	•	•		0.470
	fgenesh4_pm.C_LG_V000144	hypothetical protein (776 aa)					•	•	•		0.450
	eugene3.00070768	hypothetical protein (795 aa)					•	•	•		0.428
	gw1.XI.1022.1	SubName- Full=Putative uncharacterized protein; (240 aa)					•	•			0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
COG5246	222	COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA	1e-15
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	4e-07
smart01050	129	smart01050, CactinC_cactus, Cactus-binding C-termi	5e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	4e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	2e-04
TIGR02784	1135	TIGR02784, addA_alphas, double-strand break repair	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	7e-04
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	7e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	8e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	9e-04
pfam07462	574	pfam07462, MSP1_C, Merozoite surface protein 1 (MS	9e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.002
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.004

>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and modification]

 Score = 71.2 bits (174), Expect = 1e-15
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           +SS EQ V+ +D+ ++YL+FA EPYE IAFK  + EID  +      WD ++  +TLQ +
Sbjct: 158 VSSLEQNVEEYDESFRYLVFACEPYENIAFKFENKEIDFLSIYED--WDAETGTYTLQFF 215

Query: 61  FK 62
           F 
Sbjct: 216 FL 217

Length = 222

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 24/120 (20%), Positives = 29/120 (24%)

Query: 64  KPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 123
           KP    +  A         P    P   P    +A  AP A P         PP      
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 124 PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
           P   P   AP A P     +  +A   P         +P               P   P 
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 32/113 (28%), Positives = 35/113 (30%), Gaps = 1/113 (0%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           P AA  +  A AP   P P    P  +A  AP A P P     P P PP   G  P    
Sbjct: 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA 453

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
            +PP    P           P       P  PP  P        P  P  P  
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPA-PPAAPAPAAAPAAPAAPAAPAG 505

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 18/81 (22%), Positives = 19/81 (23%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
              A     A A           P   A  AP   PP       PP P  A      P  
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 131 GAPPAPPPPPGGSGTMANFTP 151
               A    P  +      TP
Sbjct: 99  PPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 31/102 (30%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 83  PPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGG 142
           PP   P Q  P       +     PP+   LP  PPP+     P      PP PP PP  
Sbjct: 206 PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQ- 264

Query: 143 SGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 184
                   P  Q   PP   P P  G    Q    PPP  P 
Sbjct: 265 ---QQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQ 303

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 30/101 (29%), Positives = 31/101 (30%), Gaps = 16/101 (15%)

Query: 71  PQAAPAANGAVAPP---PPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM 127
           P   PA   A AP    P P P   P   +A N P   P   T T PP PP     P P 
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423

Query: 128 PPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQG 168
            P     AP                  V   P   PP P  
Sbjct: 424 TP---ESAPKLTRAAI----------PVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 63   SKPVEGNKPQAAPAANGAV---APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPP 119
            S P +  + +AA    G++   A PPPPPP   P   +  +A   PP P       P  P
Sbjct: 2677 SSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALP 2736

Query: 120  MANGPRPMPPG----GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMP 175
             A  P  +P G    G P  P  PP  +G  A   P      PP     P      +   
Sbjct: 2737 AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796

Query: 176  IRPPPPPP 183
              P P  P
Sbjct: 2797 SLPSPWDP 2804

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 36/130 (27%), Positives = 43/130 (33%), Gaps = 6/130 (4%)

Query: 64  KPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRA-----PPPPMTGTLPPPPP 118
           K +   + +A           P PP Q  P G+    A          PP     P   P
Sbjct: 152 KMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHP 211

Query: 119 PMANGPRPMP-PGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIR 177
                 + +P P  AP  PP PP               G    MPPPPPQ    QQ P +
Sbjct: 212 EQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQ 271

Query: 178 PPPPPPNMGQ 187
           P   PP   Q
Sbjct: 272 PQAQPPPQNQ 281

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 24/107 (22%), Positives = 27/107 (25%), Gaps = 12/107 (11%)

Query: 82  APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPG 141
             P  PPP    P       P+ PP      LP       N P   P    P     P G
Sbjct: 51  PSPQAPPPVAQLPQ----PLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAG 106

Query: 142 GSGTMANFTPG--TQVGRPP--TMPPPPPQGYGGQQMPIRPPPPPPN 184
            +G      PG    V  P   T  P           P +       
Sbjct: 107 PAGPTIQTEPGQLYPVQVPVMVTQNPANSP----LDQPAQQRALQQL 149

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|214996 smart01050, CactinC_cactus, Cactus-binding C-terminus of cactin protein

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 1   MSSFEQRVQPFDKRYQYLMF-AAEPYEIIAFKVPSTEIDKSTPK-FFSHWDPDSKMFTLQ 58
            SSFE   +  D     L F A  PYE IAFK+ + E D S    F S +  D+ +  LQ
Sbjct: 64  ESSFEI--EKPDDDTCLLRFSAGPPYEDIAFKIVNREWDYSHRGGFKSSF--DNGILQLQ 119

Query: 59  LYFK 62
             FK
Sbjct: 120 FNFK 123

CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain further upstream. Length = 129

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 19/103 (18%), Positives = 26/103 (25%)

Query: 82  APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPG 141
                      P   +   +     PP +    P  P     P        PPAP     
Sbjct: 162 DVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQS 221

Query: 142 GSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 184
            +   +  +P      P    PPPP       +    P PP  
Sbjct: 222 DTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 25/110 (22%), Positives = 27/110 (24%)

Query: 74  APAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAP 133
              A GA AP    P        +A     A P       P   P  A  P P P   +P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 134 PAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
               P  G         P  Q    P   P P             P   P
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 21/97 (21%), Positives = 26/97 (26%)

Query: 49  DPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPP 108
           DP+S   + + +F            A AA  A A   P          +   AP A   P
Sbjct: 21  DPNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP 80

Query: 109 MTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGT 145
                P      A  P   P   A  AP         
Sbjct: 81  AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 30/122 (24%), Positives = 33/122 (27%), Gaps = 2/122 (1%)

Query: 62  KSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMA 121
              P E  +P A  A     AP P      P    +A     A P      +  P     
Sbjct: 606 SGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

Query: 122 NGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPP 181
               P   GGA PA PPP       A   P       P   P      G    P   PP 
Sbjct: 666 GDGWPAKAGGAAPAAPPPAPAPAAPA--APAGAAPAQPAPAPAATPPAGQADDPAAQPPQ 723

Query: 182 PP 183
             
Sbjct: 724 AA 725

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 20/100 (20%), Positives = 24/100 (24%), Gaps = 14/100 (14%)

Query: 82  APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMP-PGGAPPAPPPPP 140
                 P        +A +AP A P       P P PP A  P   P P  A  A   P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 141 GGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPP 180
                                  P       +  P+R   
Sbjct: 98  APP-------------AAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 24/101 (23%), Positives = 24/101 (23%), Gaps = 1/101 (0%)

Query: 68  GNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM 127
                 A A   A A P       P        AP   P P        P   A  P P 
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAP-PSPAGNAPAGGAPSPPPA 459

Query: 128 PPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQG 168
               A PAP P      T A          P   P  P   
Sbjct: 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 28/121 (23%), Positives = 28/121 (23%), Gaps = 2/121 (1%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
                   AAPAA      P  P             AP A PP      P   PP A   
Sbjct: 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727

Query: 125 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 184
              P   A    P PP             Q   PP   P P         P  P      
Sbjct: 728 ASAPSPAADDPVPLPPEPDDPPDPAGAPAQP--PPPPAPAPAAAPAAAPPPSPPSEEEEM 785

Query: 185 M 185
            
Sbjct: 786 A 786

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 63  SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPP--- 119
           ++      P AAPAA  +    PP      P    A  AP A P      +   P P   
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Query: 120 ----MANGPRPMPPGGAPPAPPPPPGGSGTMANFTPG 152
                   P  + P  A  +  P P  +   A  TP 
Sbjct: 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491

Length = 618

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 74  APAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAP 133
           APA   A    P P     PP         APP P       P  P A  P P P   A 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPP------PAAAPPVPP----AAPARPAAARPAPAPAPPAA 430

Query: 134 PAPPPP 139
            APP  
Sbjct: 431 AAPPAR 436

Length = 576

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 15/117 (12%), Positives = 24/117 (20%), Gaps = 5/117 (4%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           P   P      A P         P  +         PP   + P   P +          
Sbjct: 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLL 423

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRP-----PTMPPPPPQGYGGQQMPIRPPPPP 182
            A        G +    +        RP       +    P     ++ P +     
Sbjct: 424 AARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 30/121 (24%), Positives = 31/121 (25%), Gaps = 3/121 (2%)

Query: 66  VEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPR 125
           V G  P AA            PP +   P   A  A  A P P      P     A  P 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646

Query: 126 PMPPGGAPPA---PPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPP 182
              P   P     P    GG G  A          PP   P  P    G       P P 
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 183 P 183
            
Sbjct: 707 A 707

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 35/121 (28%), Positives = 43/121 (35%), Gaps = 1/121 (0%)

Query: 63   SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 122
            +KP    +P     A  AV+         PP        P+APPPP     PPPPP    
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFAL-PPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931

Query: 123  GPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPP 182
             P P P    P AP   P G+G  +   P   +G         P+    Q  P R  P  
Sbjct: 2932 PPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991

Query: 183  P 183
             
Sbjct: 2992 S 2992

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 69  NKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMP 128
           N   + P  +   A   P  P    PGV +  +P   P   + +  PP P       P P
Sbjct: 167 NSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPP 226

Query: 129 PGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQG 168
              +P  P PPPG +       P  QV    T  P PP  
Sbjct: 227 SPESPTNPSPPPGPAAP--PPPPVQQVPPLSTAKPTPPSA 264

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 33/116 (28%), Gaps = 9/116 (7%)

Query: 71  PQAAPAANGAVAPPPPPPPQGP---PPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM 127
           P AAPAA  A A         P    P   A  A R       G  P P P  A  P   
Sbjct: 402 PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA 461

Query: 128 PPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
               A    P     +   A   P          PPP       +++P     P P
Sbjct: 462 ARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP------WEELPPEFASPAP 511

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 26/80 (32%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
           P    +P  APA   A   P    P G  P      AP A P P     P P    A  P
Sbjct: 425 PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484

Query: 125 RPMPPGGAPPAPPPPPGGSG 144
              P   A PA P  P    
Sbjct: 485 PAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 37/122 (30%), Positives = 40/122 (32%), Gaps = 5/122 (4%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
           P   +     PA  G  AP  PPP   P P   A  A  AP  P       PP   A+ P
Sbjct: 660 PDASDGGDGWPAKAGGAAPAAPPPA--PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDP 717

Query: 125 RPMPPGGAPPAPPPPPGGSGTMANFT---PGTQVGRPPTMPPPPPQGYGGQQMPIRPPPP 181
              PP  A  A  P P     +               P  PPPPP           PPP 
Sbjct: 718 AAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

Query: 182 PP 183
           PP
Sbjct: 778 PP 779

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 27/105 (25%), Positives = 31/105 (29%), Gaps = 16/105 (15%)

Query: 81  VAPPPPPPPQGPPPGVSAGNAPRAPPP--PMTGTLPPPPPPMANGPRPMPPGGAPPAPPP 138
           + P P P P  P           AP P  P       P    A    P  P      PPP
Sbjct: 360 LVPVPAPQPAKP--------TAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP 411

Query: 139 PPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
            P     +A   P T    P + P          + P   PP PP
Sbjct: 412 VP--PRPVAPPVPHT----PESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 28/121 (23%), Positives = 32/121 (26%)

Query: 62  KSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMA 121
            + PV    P AA  A  A AP  PP      P  +A     A  P      P       
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAAR 437

Query: 122 NGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPP 181
                 P G   PAP P    +        G +         P          P    PP
Sbjct: 438 QASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497

Query: 182 P 182
           P
Sbjct: 498 P 498

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 21/110 (19%), Positives = 24/110 (21%)

Query: 75  PAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPP 134
           P  +G  A P             A  AP A  P        P    A          AP 
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424

Query: 135 APPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 184
              P P         +     G P   P P        +     P P   
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAA 474

Length = 700

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 28/159 (17%), Positives = 37/159 (23%), Gaps = 12/159 (7%)

Query: 40  STPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAG 99
                 S                + P      Q  P+  G    P P PPQ P       
Sbjct: 88  GPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQ 147

Query: 100 -----------NAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMAN 148
                         +         LP PP  +     P      P   PP          
Sbjct: 148 TPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPP 207

Query: 149 FTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ 187
                +  +P    P P Q      +P + P  PP + Q
Sbjct: 208 -QGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ 245

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 7/108 (6%)

Query: 61  FKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 120
           F  +  +      +   + +   P  P P   P   S  + P AP            PP 
Sbjct: 172 FPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSF-----QSDTPPP 226

Query: 121 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQG 168
           +      P    PP P  PP             +   P     P P G
Sbjct: 227 SPESPTNPS--PPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIG 272

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 18/113 (15%), Positives = 23/113 (20%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
            QA  A   AVAPP  P    PP            P   +  L                 
Sbjct: 381 AQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
             P A       +  +                P   + Y  +          P
Sbjct: 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEP 493

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 21/96 (21%), Positives = 24/96 (25%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
              A  A    A PP      P           + P P      P PP   + P P    
Sbjct: 696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPP 166
             PP PP P   +   A   P              P
Sbjct: 756 AQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 24/113 (21%), Positives = 28/113 (24%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           P+  P                   G +A  AP   P P     P    P    P P    
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
            A  A  P           +  +     P   PP P            PPPPP
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPP 762

Length = 824

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 15/50 (30%), Positives = 15/50 (30%)

Query: 91  GPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPP 140
            PP        P AP  P     PP PP     P    P  AP  P    
Sbjct: 383 APPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAA 432

Length = 576

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 72  QAAPAANGAV---APPPPPP--PQGPPPG--VSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
             +PA +  V   AP P  P   + P P    + G  P   P P +   P   PP+A   
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 125 RPMPPGGAPPAPPPPPGGSGTM 146
            P+PP     AP     G   +
Sbjct: 441 -PLPPSPQASAPRNVASGKPGV 461

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 22/115 (19%), Positives = 25/115 (21%), Gaps = 24/115 (20%)

Query: 70  KPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP 129
           KP AA  A        P  P+   P      A            P   P  A        
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAP------AAAPVAQAAAAPAPAAAPAAAASA----- 413

Query: 130 GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 184
             A P    PP              V  P    P          + + P PP   
Sbjct: 414 -PAAPPAAAPPA------------PVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455

Length = 618

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 63  SKPVEGNKPQAAPAANGA--VAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 120
           ++P    +P AA AA+ +   +     P         AG  P     P       P  P 
Sbjct: 384 TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDP---PAAVPVNPP 440

Query: 121 ANGPRPMPPGGAPPAPPPPPGGSGTMANFT 150
           +  P+ + P         P     ++   T
Sbjct: 441 STAPQAVRPAQFKEEKKIPVSKVSSLGPST 470

Length = 614

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 20/74 (27%), Positives = 21/74 (28%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           P  APA        P      PPP  +    P   P         P P     P P    
Sbjct: 435 PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Query: 131 GAPPAPPPPPGGSG 144
            AP AP  P G   
Sbjct: 495 AAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 29/113 (25%), Positives = 35/113 (30%), Gaps = 8/113 (7%)

Query: 71   PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
              A PA  G  A P  PP    PP  +   AP A PP             +    P P  
Sbjct: 2744 VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWD 2803

Query: 131  GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
             A P        +      +P   +  P +  P  P        P  P PPPP
Sbjct: 2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP--------PPPPGPPPP 2848

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 26/98 (26%), Positives = 28/98 (28%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
             AA A   A AP P   PQ  P    A   P        G  P PPP  A   +P P  
Sbjct: 411 APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQG 168
            A P P   P  +   A               P     
Sbjct: 471 AAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 21/120 (17%), Positives = 23/120 (19%)

Query: 64  KPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 123
           +P +         A  A    P P    P     A  AP A P              A  
Sbjct: 364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAP 423

Query: 124 PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
            R  P   A  A           A          P     P   G           P   
Sbjct: 424 ARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMP-- 128
           PQ APA   A APP P          S   A      P       P P  A  P P    
Sbjct: 429 PQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488

Query: 129 -PGGAPPAPPPPPGGSGTMANFTP 151
            P  AP AP  P   +G     T 
Sbjct: 489 APAAAPAAPAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 25/97 (25%), Positives = 27/97 (27%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           P  A AA  A A P P     P P  +   AP +P         P PPP A       P 
Sbjct: 410 PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA 469

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 167
            A    P         A   P      P     P   
Sbjct: 470 PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 31/127 (24%), Positives = 33/127 (25%), Gaps = 6/127 (4%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
           P     P  APAA  A A  P      P    +A    RA P          PPP    P
Sbjct: 444 PGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP 503

Query: 125 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPP-----TMPPPPPQGYGGQQMPIRPP 179
            P     AP  P   P G    +   P T             P   P             
Sbjct: 504 -PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562

Query: 180 PPPPNMG 186
           P PP   
Sbjct: 563 PRPPRAS 569

Length = 700

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 27/118 (22%), Positives = 31/118 (26%), Gaps = 12/118 (10%)

Query: 67  EGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRP 126
           + N+   A         P   P     P   A   P   P      L  P  P   GP P
Sbjct: 647 DYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP-VRPTAHHAALRAPQAPRPGGP-P 704

Query: 127 MPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 184
              GG PP P  P            G+ +   PT PP P                  N
Sbjct: 705 GGGGGLPPPPDLPAAAG----PAPCGSSLIASPTAPPEPEPPGA------EQADGAEN 752

Length = 753

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 15/97 (15%), Positives = 19/97 (19%), Gaps = 4/97 (4%)

Query: 73  AAPAANGAVAPPPPPPPQGPPPGVSA--GNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           AA A   A AP    PP    P   +        P P +                     
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWL--VEHAKRLTAQREQLVARAA 106

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 167
                    P      A      +         P P+
Sbjct: 107 APAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPR 143

Length = 484

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 17/69 (24%)

Query: 73  AAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGA 132
            +P   G   P     P  P    + G A  AP            P  A      P   A
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451

Query: 133 PPAPPPPPG 141
            P P     
Sbjct: 452 APQPAVRLN 460

Length = 598

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 21/114 (18%), Positives = 25/114 (21%), Gaps = 4/114 (3%)

Query: 64  KPVEGNKPQAAPAANGAVAPPPPPP---PQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 120
               G K    P      A P P         P   SA   P AP         PP   +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429

Query: 121 ANG-PRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQ 173
                 P+ P    P    P                  P T+ P   +      
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG 483

Length = 614

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 20/74 (27%), Gaps = 6/74 (8%)

Query: 83  PPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM---PPGGAPPAPPPP 139
           PP P    G PPG   G      P            P A GP       P  A  A  PP
Sbjct: 391 PPSPGGGGGGPPG---GGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 140 PGGSGTMANFTPGT 153
              +         +
Sbjct: 448 APAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 27/113 (23%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 83  PPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLP----PPPPPMANGPRPMPPGGAPPAPPP 138
           P     P G P G + G       PP  G  P       P        MP    P  P  
Sbjct: 380 PRMRQLPMGSPMGGAMGQ------PPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLR 433

Query: 139 PPGGSGTMANFTPGTQ----VGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ 187
           P G +   A   P         +PP  P   P  Y    +    P P     Q
Sbjct: 434 PNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQ 486

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA, alphaproteobacterial type

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/89 (20%), Positives = 23/89 (25%), Gaps = 8/89 (8%)

Query: 72  QAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP-- 129
           Q               P   P     A         P     P P  P    PRP+ P  
Sbjct: 899 QGKAEWRLRFTRRDWDPVGLPVE---AAQTDTLEALPDWLRAPAPAEPAL--PRPLAPSG 953

Query: 130 -GGAPPAPPPPPGGSGTMANFTPGTQVGR 157
            GGA  +  P      ++    P   + R
Sbjct: 954 LGGAIDSALPGEAVRSSLGTQAPAFALLR 982

AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species [DNA metabolism, DNA replication, recombination, and repair]. Length = 1135

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 23/127 (18%), Positives = 25/127 (19%), Gaps = 7/127 (5%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
                      A          P       G  A     AP  P     P  P   A   
Sbjct: 638 EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAA 697

Query: 125 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPT-------MPPPPPQGYGGQQMPIR 177
              P       PP                    P         +PP P         P +
Sbjct: 698 PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757

Query: 178 PPPPPPN 184
           PPPPP  
Sbjct: 758 PPPPPAP 764

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 19/80 (23%), Positives = 20/80 (25%), Gaps = 5/80 (6%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
                   A  AA  A AP   P      P   A  AP     P+     P         
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVA-----S 474

Query: 125 RPMPPGGAPPAPPPPPGGSG 144
               P  AP A    P   G
Sbjct: 475 AAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 28/106 (26%), Positives = 30/106 (28%), Gaps = 7/106 (6%)

Query: 69  NKPQAAPAANGAVAPPPPPPP---QGPPPGVSAGNAPRAPPPPMTGTLPPP----PPPMA 121
             P  APA        P  PP   Q   PG+S    P  P PP     PP     PPP  
Sbjct: 221 PAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQN 280

Query: 122 NGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 167
                        AP PPP     +          R P       Q
Sbjct: 281 QPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQ 326

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 1/112 (0%)

Query: 70   KPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP 129
            +P +   A    AP  PP  +   P VS      A PP      P P  P    P+P PP
Sbjct: 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924

Query: 130  GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPP 181
                P PPPPP          P T            PQ + G  +P R   P
Sbjct: 2925 PPPQPQPPPPPPPR-PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975

Length = 3151

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 13/76 (17%), Positives = 16/76 (21%)

Query: 64  KPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 123
           + ++   P       G       P          A  A  A   P       P    A  
Sbjct: 385 RRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAA 444

Query: 124 PRPMPPGGAPPAPPPP 139
             P P     PA    
Sbjct: 445 APPAPAAAPQPAVRLN 460

Length = 598

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 24/72 (33%)

Query: 69  NKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMP 128
           N  +  P    +  PP P PP   P   +    P  PPP  T      P  +     P P
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPP 578

Query: 129 PGGAPPAPPPPP 140
           P    P P P  
Sbjct: 579 PIPEEPTPSPTK 590

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 11/77 (14%), Positives = 17/77 (22%)

Query: 63  SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 122
           +  V   +  A P    +     P  P             +              P  A+
Sbjct: 388 TAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAAS 447

Query: 123 GPRPMPPGGAPPAPPPP 139
             RP+       A   P
Sbjct: 448 RARPVNSALERLASVRP 464

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 58  QLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPP 117
           +L  +S+   G+    A         PPPP P  P P  +A   P  PPPP     P   
Sbjct: 507 KLNLESQ--SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP----PTAT 560

Query: 118 PPMANGPRPMPPGGAPPAPPPPP 140
              +N P  +P   +PP P P  
Sbjct: 561 QASSNAPAQIPADSSPPPPIPEE 583

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 36/151 (23%), Positives = 40/151 (26%), Gaps = 4/151 (2%)

Query: 21  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGA 80
           AA P E  A   P     +  PK  +  D                     P  APAA  A
Sbjct: 633 AAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA 692

Query: 81  VAPPPPPPPQ----GPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAP 136
            A   P  P       PP   A +    PP    G   P P      P P  P   P   
Sbjct: 693 PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752

Query: 137 PPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 167
             P       A          PP  PP   +
Sbjct: 753 GAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 22/65 (33%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           P A   A  A APP    P  PP   +A  A  AP  P        P   A      P  
Sbjct: 62  PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLR 121

Query: 131 GAPPA 135
           GA  A
Sbjct: 122 GAAAA 126

Length = 1228

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 16/103 (15%), Positives = 21/103 (20%), Gaps = 1/103 (0%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
                      A     AP  PPPP   P    A   P      +           A   
Sbjct: 379 ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKA 438

Query: 125 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 167
           +   P  A     P       +A+  P               +
Sbjct: 439 KKSEP-AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Length = 647

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 69  NKPQAAPAANGAVA-----PPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 123
            +   A  AN   A     P  P  P GP      GN P + PP  +    PPP     G
Sbjct: 117 AEQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVA-VPPPTAFYPG 175

Query: 124 PRPMPPGGAPPAPPPPPGG 142
               PP        P P  
Sbjct: 176 NGVTPPPQVTYQSVPVPNR 194

Length = 475

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 64  KPVEGNKPQAAPAANGAVAPP---PPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPM 120
            P    +P+AA AAN     P      PP  PP  V+    P    P        P    
Sbjct: 382 TPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA---PPVPHTPE-----SAPKLTR 433

Query: 121 ANGPRPMPPGGAPPAPPP 138
           A  P    P   PPAPP 
Sbjct: 434 AAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 35/126 (27%), Positives = 40/126 (31%), Gaps = 11/126 (8%)

Query: 63   SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPP-----PP 117
            S     + P A  A   A+ P   P    PPP  +   AP  PP P   +LP      P 
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

Query: 118  PPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIR 177
              +   P    P   P AP  PP              V R       PP        P  
Sbjct: 2860 GDVRRRPPSRSPAAKPAAPARPP------VRRLARPAVSRSTESFALPPDQPERPPQPQA 2913

Query: 178  PPPPPP 183
            PPPP P
Sbjct: 2914 PPPPQP 2919

Length = 3151

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 19/107 (17%), Positives = 23/107 (21%), Gaps = 13/107 (12%)

Query: 82  APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPG 141
           A     P Q   P  +    P A P P       P P  +          A     P   
Sbjct: 369 ASGGRGPKQHIKPVFTQ---PAAAPQPSAAAAASPSPSQS--------SAAAQPSAPQSA 417

Query: 142 GSGTMANFTPGTQVGRPPTMPPP--PPQGYGGQQMPIRPPPPPPNMG 186
                   T          + PP   PQ     Q       P   + 
Sbjct: 418 TQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 24/117 (20%), Positives = 29/117 (24%), Gaps = 2/117 (1%)

Query: 63  SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 122
             P       A PAA G                 +A  AP    PP    LPP     + 
Sbjct: 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFA--SP 509

Query: 123 GPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPP 179
            P       A       P  +    +    T    P   P P         +  RPP
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566

Length = 700

>gnl|CDD|219419 pfam07462, MSP1_C, Merozoite surface protein 1 (MSP1) C-terminus

 Score = 38.8 bits (90), Expect = 9e-04
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 67  EGNKPQAAPAANGAVAPPPP---PPPQGPPPGVSAGNAPRAPPPPMTGTLP 114
           +G   +A       V PP     P P    P  S+G+A  +   P +G++ 
Sbjct: 260 KGTTQEAKVTT--VVTPPQADAAPSPLSVRPAGSSGSASGSTQIPTSGSVL 308

This family represents the C-terminal region of merozoite surface protein 1 (MSP1) which are found in a number of Plasmodium species. MSP-1 is a 200-kDa protein expressed on the surface of the P. vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19-kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate. Length = 574

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 29/114 (25%), Positives = 33/114 (28%), Gaps = 1/114 (0%)

Query: 71   PQAAPAANGAVAPPPP-PPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPP 129
               A A   A +P  P PPP    P          PP    G    P   +   P    P
Sbjct: 2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

Query: 130  GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
               P AP  PP         +  T+    P   P  P        P   P PPP
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

Length = 3151

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 21/81 (25%), Positives = 21/81 (25%), Gaps = 26/81 (32%)

Query: 103 RAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMP 162
            AP PP      P P      P   PP  APP PP  P                  P   
Sbjct: 380 GAPAPPSAAWGAPTPAA----PAAPPPAAAPPVPPAAPAR-----------PAAARPAPA 424

Query: 163 PPPPQGYGGQQMPIRPPPPPP 183
           P PP               PP
Sbjct: 425 PAPP-----------AAAAPP 434

Length = 576

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 22/87 (25%), Positives = 23/87 (26%), Gaps = 9/87 (10%)

Query: 80  AVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPP 139
           A  P P  PPQ   P  SA                PP  P      P PP  AP   P  
Sbjct: 363 APLPEPEVPPQSAAPAASAQATAAPTAAV-----APPQAPAV----PPPPASAPQQAPAV 413

Query: 140 PGGSGTMANFTPGTQVGRPPTMPPPPP 166
           P    T        Q+ R         
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKK 440

Length = 647

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 20/98 (20%), Positives = 23/98 (23%), Gaps = 4/98 (4%)

Query: 74  APAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPP----PPMANGPRPMPP 129
           AP A  A A   PPP   P            P P +              +A    P  P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 130 GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 167
               PA P     +   A          P    P    
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 23/71 (32%), Positives = 27/71 (38%)

Query: 97  SAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVG 156
           SA N  + PPPP     PP P P    P    P   PP PPP    + + A         
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 157 RPPTMPPPPPQ 167
            PP +P  P  
Sbjct: 576 PPPPIPEEPTP 586

Length = 620

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 21/77 (27%), Positives = 22/77 (28%), Gaps = 4/77 (5%)

Query: 68  GNKPQAAPAANGAVAPPPPPPPQGP----PPGVSAGNAPRAPPPPMTGTLPPPPPPMANG 123
           G  P    AA    AP P    Q          S  +AP A        LP   P     
Sbjct: 343 GGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGP 402

Query: 124 PRPMPPGGAPPAPPPPP 140
           P P P   A   P   P
Sbjct: 403 PAPEPARSAEAPPLVAP 419

Length = 504

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 90  QGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSG 144
                 V+A     APP P       P P     P P     A PA  P PG  G
Sbjct: 45  DEDLGAVAASAQAYAPPAP------APLPAALVAPAPAAASIAAPAAVPAPGAIG 93

Length = 767

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 36/131 (27%), Positives = 40/131 (30%), Gaps = 31/131 (23%)

Query: 71   PQAAPAANGAVAPPPPPPPQGP-----------------PPGVSAGNAPRAPPPPMTGTL 113
            P   P +    APPPPP P  P                 PP  S    P AP  P    L
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Query: 114  PPPPPPMANGPRPMPPGG-APPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQ 172
              P    +     +PP     P  P  P                +P   PPPPPQ     
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAP-------------PPPQPQPQPPPPPQPQPPP 2933

Query: 173  QMPIRPPPPPP 183
              P RP PP  
Sbjct: 2934 PPPPRPQPPLA 2944

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 28/123 (22%), Positives = 32/123 (26%), Gaps = 1/123 (0%)

Query: 62  KSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMA 121
           +     G     APA   A AP     P    P   A  A  AP        P P     
Sbjct: 437 RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496

Query: 122 NGPRPMPPGGAPPAP-PPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPP 180
                +PP  A PAP  P    +G +A   P      P                P     
Sbjct: 497 PPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA 556

Query: 181 PPP 183
             P
Sbjct: 557 TEP 559

Length = 700

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 23/101 (22%), Positives = 25/101 (24%), Gaps = 1/101 (0%)

Query: 84  PPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANG-PRPMPPGGAPPAPPPPPGG 142
              P P     G + G     P P         P  +A G P       A    P  P  
Sbjct: 641 TALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRP 700

Query: 143 SGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
            G              P    P P G      P  PP P P
Sbjct: 701 GGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEP 741

Length = 753

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 18/103 (17%), Positives = 23/103 (22%), Gaps = 11/103 (10%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGN-----------APRAPPPPMTGTLPPPPPP 119
                AA  AV+ P  P  +  P  V                  AP  P       P   
Sbjct: 63  QPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAER 122

Query: 120 MANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMP 162
            A          A  A P P   +   A      +      + 
Sbjct: 123 AAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVN 165

Length = 484

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 15/40 (37%)

Query: 127 MPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPP 166
           +PPG  PP PPPPPG                PP+ PPPPP
Sbjct: 4   LPPGNPPP-PPPPPG--------------FEPPSQPPPPP 28

Length = 2365

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 9/38 (23%)

Query: 146 MANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
           MA+  PG     PP  PPPPP G+   + P +PPPPPP
Sbjct: 1   MASLPPGN----PP--PPPPPPGF---EPPSQPPPPPP 29

Length = 2365

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 14/72 (19%)

Query: 73  AAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGA 132
           A  AA  A A P P          S  + P A         P PPP          P   
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAA-----PAPPPN---------PPAT 311

Query: 133 PPAPPPPPGGSG 144
           PP PP   G   
Sbjct: 312 PPEPPARRGRGS 323

Length = 656

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 23/87 (26%), Positives = 25/87 (28%), Gaps = 4/87 (4%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
           P    +PQ    +     PPP PP Q   P          PPP    T  P  P   N P
Sbjct: 240 PPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA----QPPPQNQPTPHPGLPQGQNAP 295

Query: 125 RPMPPGGAPPAPPPPPGGSGTMANFTP 151
            P P           P G      F  
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQRGPQFRE 322

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 32/123 (26%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 73   AAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGA 132
                A+ + +    P P  P    +A  AP A  PP      P PPP +  P   PP   
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG 2844

Query: 133  PPAPPPPPGGS----GTMANFTPGTQVGRPPTMPPPPPQ--------GYGGQQMPIRPPP 180
            PP P  P GGS    G +    P       P  P  PP             +   + P  
Sbjct: 2845 PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQ 2904

Query: 181  PPP 183
            P  
Sbjct: 2905 PER 2907

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 28/119 (23%), Positives = 32/119 (26%), Gaps = 4/119 (3%)

Query: 71   PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
            P            P PPPP   P        P    PP       P P   + PR     
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 131  GAPPAPPPPPGG---SGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMG 186
            G       PP               T +  PP  PPP P+      +   P PP P   
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPP-PPPTPEPAPHALVSATPLPPGPAAA 2728

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 27/110 (24%), Positives = 31/110 (28%)

Query: 74   APAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAP 133
              AA  +  P  P      P   S  +    PPPP T    P     A    P P     
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 134  PAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
             +P  P   +       P T  G      PP   G      P  P   PP
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780

Length = 3151

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 18/73 (24%), Positives = 18/73 (24%), Gaps = 5/73 (6%)

Query: 63  SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 122
             P         PAA  A  P   PP     P   A   P   P P     P    P A 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAP-----PAAAAPPAR 436

Query: 123 GPRPMPPGGAPPA 135
              P     A   
Sbjct: 437 SADPAAAASAGDR 449

Length = 576

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 16/68 (23%), Positives = 17/68 (25%)

Query: 116 PPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMP 175
           PP P   G  P   GGAP AP          A    G        +P             
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 176 IRPPPPPP 183
             P P   
Sbjct: 451 AAPQPAVR 458

Length = 598

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 20/77 (25%), Positives = 21/77 (27%), Gaps = 4/77 (5%)

Query: 90  QGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANF 149
            G     +    P    PP     PP P P A  P P PP   P A              
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNA----PAQ 569

Query: 150 TPGTQVGRPPTMPPPPP 166
            P      PP    P P
Sbjct: 570 IPADSSPPPPIPEEPTP 586

Length = 620

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 8/27 (29%)

Query: 114 PPPPPPMANGPRPMPPGGAPPAPPPPP 140
           PPPPPP        PPG  PP+ PPPP
Sbjct: 9   PPPPPP--------PPGFEPPSQPPPP 27

Length = 2365

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 20/76 (26%), Positives = 25/76 (32%)

Query: 72  QAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGG 131
             +PAA+  V  PP P     P G  A   P   P P       PPP   +    M    
Sbjct: 730 APSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789

Query: 132 APPAPPPPPGGSGTMA 147
           AP         +  +A
Sbjct: 790 APSMDDEDRRDAEEVA 805

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 40/137 (29%), Positives = 45/137 (32%), Gaps = 21/137 (15%)

Query: 63   SKPVEGNKPQAAPAANGAVAPPP----------------PPPPQGPPPGVSAGNAPRAPP 106
              P     P  AP A  A  PP                  P P  P    +A  AP A  
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818

Query: 107  PPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPP 166
            PP      P PPP +  P   PP   PP P  P GGS       PG  V R P    P  
Sbjct: 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGS-----VAPGGDVRRRPPSRSPAA 2873

Query: 167  QGYGGQQMPIRPPPPPP 183
            +     + P+R    P 
Sbjct: 2874 KPAAPARPPVRRLARPA 2890

Length = 3151

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 12/59 (20%), Positives = 15/59 (25%)

Query: 82  APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPP 140
           A  P P P  P    +     +   P      P    P A  P+   P       P   
Sbjct: 14  AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	99.97
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	99.9
PF09732	125	CactinC_cactus: Cactus-binding C-terminus of cacti	99.43
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.32
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.18
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	95.71
KOG2370	623	consensus Cactin [Signal transduction mechanisms]	95.57
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	91.86
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	85.6

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=99.97  E-value=4.1e-33  Score=236.53  Aligned_cols=68  Identities=63%  Similarity=1.055  Sum_probs=65.4

Q ss_pred             CCccccccCCCCCCCcEEEEEeCCCceeeeecCCcccccCCCCceeeecCCCCeEEEEEeeecCCCCC
Q 029828            1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEG   68 (187)
Q Consensus         1 MSayEQrvE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~F~LQf~FK~~~~~~   68 (187)
                      ||+|||+||.+|++||||||||||||||||||||+|||++++|||||||+|||+|+||||||.++.+.
T Consensus       152 mssyeq~ve~~dk~~qyLvfaaePyE~Iafk~p~~Eid~se~Kf~t~wd~~tk~y~lqF~fk~~~~~~  219 (222)
T KOG0227|consen  152 MSSYEQKVEPPDKSWQYLVFAAEPYENIAFKVPSREIDKSEGKFWTHWDAETKQYTLQFFFKQAEPEQ  219 (222)
T ss_pred             hhhhHhhcCCccccceEEEEEeccccceeeecCchhhhhccCceeeeecCCCceEEEEEEecccCccC
Confidence            89999999999999999999999999999999999999999999999999999999999999876553

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=99.90  E-value=2e-24  Score=183.26  Aligned_cols=63  Identities=43%  Similarity=0.837  Sum_probs=59.5

Q ss_pred             CCccccccCCCCCCCcEEEEEeCCCceeeeecCCcccccCCCCceeeecCCCCeEEEEEeeecCC
Q 029828            1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKP   65 (187)
Q Consensus         1 MSayEQrvE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~F~LQf~FK~~~   65 (187)
                      ||+|||+||..|+++|||||||||||||||||+++|||..+  .|++||..||+|+|||||+.-.
T Consensus       158 vs~lEq~ve~~d~~f~yLV~a~ePyEnIafk~~~~ei~f~s--~~~~wDa~~~tYt~qFff~~a~  220 (222)
T COG5246         158 VSSLEQNVEEYDESFRYLVFACEPYENIAFKFENKEIDFLS--IYEDWDAETGTYTLQFFFLEAG  220 (222)
T ss_pred             hhhhhhcchhhcccceEEEEEeccccceeeecCCCccchhh--hcccccccCceEEEEEeeeccc
Confidence            79999999999999999999999999999999999999776  7789999999999999998654

>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex

Probab=99.43  E-value=1.4e-13  Score=109.85  Aligned_cols=52  Identities=33%  Similarity=0.479  Sum_probs=47.3

Q ss_pred             CCCCcEEEEE-eCCCceeeeecCCcccccCCC-CceeeecCCCCeEEEEEeeecCC
Q 029828           12 DKRYQYLMFA-AEPYEIIAFKVPSTEIDKSTP-KFFSHWDPDSKMFTLQLYFKSKP   65 (187)
Q Consensus        12 dk~~QYLLiA-aEPYEtIAFKIPnrEIDk~eg-kfwt~WD~DtK~F~LQf~FK~~~   65 (187)
                      |++++||+|+ ++|||+|||||.|||+|++.+ .|+++||.  ++|.|+|+||..+
T Consensus        69 ~~~~~~L~F~AgpPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~--gilqL~F~FKr~~  122 (125)
T PF09732_consen   69 NPDFCILRFHAGPPYEDIAFKIVNREWDYSHKRGFRCSFDR--GILQLYFNFKRYR  122 (125)
T ss_pred             CCCEEEEEEeCCCCCcCEEEEEecCeeecCCCCCceEEeeC--CEEEEEEEEEhhh
Confidence            8999999994 699999999999999999988 68999986  6999999999754

The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.32  E-value=3.1e-06  Score=84.68  Aligned_cols=33  Identities=42%  Similarity=0.871  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029828          121 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRP  158 (187)
Q Consensus       121 ~~~ppp~pp~g~p~~ppppp~~~~~~~~f~~g~~~~~p  158 (187)
                      |++|+|+++.|+.++||||+.+     +|-.|.+++.+
T Consensus       568 G~PPpPppppg~~gppPPPpp~-----g~~Gg~ppPP~  600 (1102)
T KOG1924|consen  568 GGPPPPPPPPGGGGPPPPPPPG-----GFLGGPPPPPP  600 (1102)
T ss_pred             CCCCccCCCCCCCCCCCcCCCC-----CCCCCCCCCCC
Confidence            3444444444544444444444     34555555544

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.18  E-value=5.2e-06  Score=83.12  Aligned_cols=50  Identities=52%  Similarity=1.189  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCCCCCCCCC----CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 029828           93 PPGVSAGNAPRAPPPPMT----GTLPPPPPP-MANGPRPMPPGGAPPAPPPPPGG  142 (187)
Q Consensus        93 p~~~~~~~pp~~pppp~~----g~~ppppp~-~~~~ppp~pp~g~p~~ppppp~~  142 (187)
                      +++.++|+++++||++++    |++||||++ +++.|||++++|.++.+||||+.
T Consensus       547 pPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPpp~g~~Gg~ppPP~~  601 (1102)
T KOG1924|consen  547 PPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPPPGGFLGGPPPPPPP  601 (1102)
T ss_pred             CCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Confidence            345555665555554443    233333333 44444444455555555555444

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=95.71  E-value=0.19  Score=48.98  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             cCCCCeEEEEEeeec-CCCCCCCCCCCCCCCCCCCCCCCC
Q 029828           49 DPDSKMFTLQLYFKS-KPVEGNKPQAAPAANGAVAPPPPP   87 (187)
Q Consensus        49 D~DtK~F~LQf~FK~-~~~~~nk~~~~~~angttaPpppp   87 (187)
                      |+||+.|.+-|.=|. ...+..+.-++-.++...+|+||+
T Consensus       285 ~~~t~~fi~~fi~k~~~~~~Sv~~~~~~lp~q~~~P~PPP  324 (569)
T KOG3671|consen  285 ERDTMKFIYDFIQKNPNGLPSVGQSAAELPRQKKRPPPPP  324 (569)
T ss_pred             chhhccccccchhcCCCCCcccccchhhcccccCCCCCcC
Confidence            456666666666554 333333333333345555554444

>KOG2370 consensus Cactin [Signal transduction mechanisms]

Probab=95.57  E-value=0.0046  Score=59.86  Aligned_cols=44  Identities=32%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             EEEeCCCceeeeecCCcccccCCC--CceeeecCCCCeEEEEEeeecCC
Q 029828           19 MFAAEPYEIIAFKVPSTEIDKSTP--KFFSHWDPDSKMFTLQLYFKSKP   65 (187)
Q Consensus        19 LiAaEPYEtIAFKIPnrEIDk~eg--kfwt~WD~DtK~F~LQf~FK~~~   65 (187)
                      .+|.+|||.|||||=|+|-+.+..  -.|+|   ++.+|.|-|+||.-+
T Consensus       575 F~aGpPYeDIAFkIVnkeWeyshKrGfKcqF---~ngvlqL~F~FKk~r  620 (623)
T KOG2370|consen  575 FHAGPPYEDIAFKIVNKEWEYSHKRGFKCQF---DNGVLQLWFRFKKYR  620 (623)
T ss_pred             eccCCcchhhhhhhhcchhhhhhhcCcccee---eCCeeeeeehhhhhh
Confidence            468999999999999999887644  33444   567899999998643

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=91.86  E-value=6.1  Score=38.94  Aligned_cols=7  Identities=43%  Similarity=0.771  Sum_probs=3.1

Q ss_pred             ccCCCCc
Q 029828           38 DKSTPKF   44 (187)
Q Consensus        38 Dk~egkf   44 (187)
                      |+.+.+|
T Consensus       285 ~~~t~~f  291 (569)
T KOG3671|consen  285 ERDTMKF  291 (569)
T ss_pred             chhhccc
Confidence            3344455

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=85.60  E-value=23  Score=36.70  Aligned_cols=15  Identities=13%  Similarity=0.406  Sum_probs=11.5

Q ss_pred             CceeeecCCCCeEEE
Q 029828           43 KFFSHWDPDSKMFTL   57 (187)
Q Consensus        43 kfwt~WD~DtK~F~L   57 (187)
                      .|++|||.++.+-||
T Consensus       500 e~k~~wD~~lGVt~I  514 (894)
T KOG0132|consen  500 EYKDYWDVELGVTYI  514 (894)
T ss_pred             hhhhhhhcccCeeEe
Confidence            478899998887663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	2e-33
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	3e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-04

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231

 Score =  117 bits (295), Expect = 2e-33
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 15/81 (18%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKF--------------FS 46
           +S  E       K  ++L+ A EP+E IA ++P  EI  S                   +
Sbjct: 148 VSGLELSDTK-QKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCT 206

Query: 47  HWDPDSKMFTLQLYFKSKPVE 67
            WD  SK++ +Q +FK    E
Sbjct: 207 FWDAISKLYYVQFFFKQAEQE 227

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 65.2 bits (158), Expect = 6e-13
 Identities = 19/121 (15%), Positives = 26/121 (21%), Gaps = 1/121 (0%)

Query: 68  GNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPM 127
            +K +  P A         P  Q          A         G  P    P     + +
Sbjct: 3   HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62

Query: 128 PPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPT-MPPPPPQGYGGQQMPIRPPPPPPNMG 186
            P             +           +  P   M P  P   G      + P   P  G
Sbjct: 63  TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

Query: 187 Q 187
           Q
Sbjct: 123 Q 123

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.0 bits (147), Expect = 2e-11
 Identities = 19/113 (16%), Positives = 25/113 (22%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           P   PAA G        PPQG  P +            +   +      M +      P 
Sbjct: 31  PPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPL 90

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
             P A   P              Q    P    P        +   +  P   
Sbjct: 91  VDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDL 143

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 60.2 bits (145), Expect = 4e-11
 Identities = 15/117 (12%), Positives = 20/117 (17%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
                    A     P     P    +AG +      P  G +P         P      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNMGQ 187
                                       P +P         QQ P+  P        
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 59.5 bits (143), Expect = 7e-11
 Identities = 18/123 (14%), Positives = 23/123 (18%)

Query: 65  PVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGP 124
           P                A P     Q   P     +            +     P+ +  
Sbjct: 35  PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94

Query: 125 RPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPN 184
             M P        P       MA    G           P  Q Y    +   PPP    
Sbjct: 95  AYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDL 154

Query: 185 MGQ 187
              
Sbjct: 155 TLP 157

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 17/112 (15%), Positives = 22/112 (19%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
           PQ A  + G      P   Q       A  +           + P        P  M   
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPP 182
                 P      G  +              P             +  PPPP
Sbjct: 109 LQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPP 160

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 6e-07
 Identities = 10/89 (11%), Positives = 16/89 (17%)

Query: 99  GNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRP 158
            +  +   P           P+    + MPP     A               P     + 
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 159 PTMPPPPPQGYGGQQMPIRPPPPPPNMGQ 187
            T           Q           N+  
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPL 90

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 15/115 (13%), Positives = 22/115 (19%), Gaps = 2/115 (1%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
                                    ++  +    P       + P  P       P+   
Sbjct: 55  SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGT--PLQQQ 112

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNM 185
             P A P     S  M           P  +    P       +P  P   PP  
Sbjct: 113 QQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPER 167

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 16/98 (16%), Positives = 20/98 (20%), Gaps = 1/98 (1%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPR-PMPP 129
            Q   A            P   P        P     P+     P   P    P   M  
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 130 GGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 167
              P     P      +        +  PP + PP   
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 19/113 (16%), Positives = 22/113 (19%), Gaps = 3/113 (2%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
            Q    A   +                       P   M    P  P  M    +     
Sbjct: 59  QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ---PQVPVQMGTPLQQQQQP 115

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
            A PA   P    G               T  PPP         P+  PP   
Sbjct: 116 MAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 14/110 (12%), Positives = 20/110 (18%)

Query: 71  PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
            Q         A             +   NA   P  P+    P                
Sbjct: 65  AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124

Query: 131 GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPP 180
            A       P       +              PPPP     ++M +    
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSEL 174

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 6/68 (8%), Positives = 12/68 (17%)

Query: 120 MANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPP 179
           M++  + + P                     P        +         G      +  
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 180 PPPPNMGQ 187
              P   Q
Sbjct: 61  FLTPAQEQ 68

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.5 bits (120), Expect = 7e-08
 Identities = 23/117 (19%), Positives = 28/117 (23%), Gaps = 3/117 (2%)

Query: 72  QAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPP-PPMANGPRPMPPG 130
               +           P        S   A   PP  +    PPPP  P A  P     G
Sbjct: 8   HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG 67

Query: 131 GAPPAP-PPPPGGSGTMA-NFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPPNM 185
            +        P G GT +            P  P   P   G     +   P P   
Sbjct: 68  DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 19/92 (20%), Positives = 21/92 (22%), Gaps = 4/92 (4%)

Query: 81  VAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG-GAPPAPPPP 139
            AP  P  P       +A   P  P PP  G  P   P      +P  P    P      
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 140 PGGSGTMANFTPGTQVGRPPTMPP---PPPQG 168
                                      PPP G
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 15/79 (18%), Positives = 18/79 (22%), Gaps = 2/79 (2%)

Query: 63  SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 122
           + P     P  A A   A   P  P P  P  G +    P+           PP P   N
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAP--PALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 123 GPRPMPPGGAPPAPPPPPG 141
                              
Sbjct: 61  ATVAAGHATLREHLRDIKA 79

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 20/107 (18%), Positives = 25/107 (23%), Gaps = 2/107 (1%)

Query: 63  SKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN 122
           + P       A  AANG  A P PP     P G       + P  P           +A 
Sbjct: 6   TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65

Query: 123 GPRPMPPG--GAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQ 167
           G   +                            Q  +P   P  P  
Sbjct: 66  GHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEG 112

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 11/58 (18%), Positives = 14/58 (24%), Gaps = 11/58 (18%)

Query: 114 PPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGG 171
               P +   P+ M   G   A PP                 G        P  G+G 
Sbjct: 576 TETQPIVYGQPQLMLTAGPSVAVPPQAPFGY-----------GYTAPAYGQPQPGFGY 622

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 24/133 (18%), Positives = 41/133 (30%)

Query: 46  SHWDPDSKMFTLQLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAP 105
            H D D KMF+ Q+        G    AAP+ + ++ P    P Q   P  +  +     
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 106 PPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPP 165
            PP +    P  P   + P     G +  +P      +   ++      +G    +  P 
Sbjct: 67  GPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126

Query: 166 PQGYGGQQMPIRP 178
                        
Sbjct: 127 HPSGNMASFTKHI 139

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 2/96 (2%)

Query: 89  PQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPPPPGGSGT--M 146
           P G    +     P  PP   +    P     +          A PA P P    G    
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 147 ANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPP 182
           ++ +   +            Q  GG     R     
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 82  APPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPGGAPPAPPP 138
               PP    PPP    G  P+  PP        PP      P+  PP GAPPA PP
Sbjct: 385 QAAYPPQGYAPPPQ---GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 18/116 (15%), Positives = 28/116 (24%), Gaps = 3/116 (2%)

Query: 71   PQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMANGPRPMPPG 130
                       +P           G              +        P + G     PG
Sbjct: 1482 ADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPG 1541

Query: 131  GAPPAP---PPPPGGSGTMANFTPGTQVGRPPTMPPPPPQGYGGQQMPIRPPPPPP 183
             +P +P   P  P  S T  +++P +    P +    P         P   P  P 
Sbjct: 1542 FSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1597

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 13/109 (11%), Positives = 21/109 (19%)

Query: 58  QLYFKSKPVEGNKPQAAPAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPP 117
            LYF+ +     +   A     +                      +        T     
Sbjct: 16  NLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETA 75

Query: 118 PPMANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTMPPPPP 166
            P +N         A  A  P    S  +A         +        P
Sbjct: 76  SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	99.97

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-32  Score=233.72  Aligned_cols=62  Identities=35%  Similarity=0.550  Sum_probs=55.8

Q ss_pred             CCccccccCCCCCCCcEEEEEeCCCceeeeecCCcccccCC--------------CCceeeecCCCCeEEEEEeeec
Q 029828            1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKST--------------PKFFSHWDPDSKMFTLQLYFKS   63 (187)
Q Consensus         1 MSayEQrvE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~e--------------gkfwt~WD~DtK~F~LQf~FK~   63 (187)
                      ||+|||++|.+ ++||||||||||||||||||||+|||+.+              +|||||||+|+|+|+||||||.
T Consensus       148 MSAyEQrVE~P-Kd~QYLVIAAEPYETIAFKIPNrEIDk~e~~~~~~~~~svDElgKfwTyWD~DsK~FyLQffFK~  223 (231)
T 4dgw_C          148 VSGLELSDTKQ-KGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQ  223 (231)
T ss_dssp             EETTCCSSCCC-CCCEEEEEECSSSCCBCCEECSSCSSCCSCCSCCCCCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred             ECHHHhcccCC-CCCEEEEEEeCCCCCceeEcCChhhccccccccccccccccccCCEEEEecCCCCEEEEEEEEee
Confidence            89999999998 99999999999999999999999999998              7899999999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00