Citrus Sinensis ID: 029834

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQTKA
ccHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHccccEEEEEEEEccccccccHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEccccccccccc
ccHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccHHHHHHHHHHccccccEEEEEcccccccEccccccccHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccc
MINESARLARAFCdrrlpvmafldthhpnkpedpypthciagthesnlvpalqwiekepnvtirrkdcfdgyfgsieddgsnvFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTmsarnrgflrplEEVVVYSAAcatfdipthvathtkgalahpqefmHHVGLYMAKERGakianqlsfseqtka
MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQTKA
MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQTKA
********ARAFCDRRLPVMAFLDTH********YPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKE*****************
MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSE****
MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQTKA
MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSE****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQTKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
O32091183 Uncharacterized isochoris yes no 0.689 0.704 0.300 1e-06
>sp|O32091|PNCA_BACSU Uncharacterized isochorismatase family protein PncA OS=Bacillus subtilis (strain 168) GN=pncA PE=3 SV=1 Back     alignment and function desciption
 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 24/153 (15%)

Query: 1   MINES-ARLARAFCDRRLPVMAFLDTHHPNKPEDP----YPTHCIAGTHESNL----VPA 51
           MI E+   L + F      V+  +D+H       P    +P H I GT   +L    +P 
Sbjct: 29  MIEEAIVNLTKEFITNGDYVVLAVDSHDEGDQYHPETRLFPPHNIKGTEGKDLYGKLLPL 88

Query: 52  LQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFV 111
            Q  E EPNV    K  +  + G+  +         ++  QI +L + GVCTDICVL   
Sbjct: 89  YQKHEHEPNVYYMEKTRYSAFAGTDLELK-------LRERQIGELHLAGVCTDICVLH-- 139

Query: 112 CSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 144
            + + A N+GF      +VV+  A A+F+   H
Sbjct: 140 -TAVDAYNKGF-----RIVVHKQAVASFNQEGH 166

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
388517859245 unknown [Lotus japonicus] 0.994 0.759 0.784 1e-86
224093276245 predicted protein [Populus trichocarpa] 0.994 0.759 0.779 2e-86
357476213269 Isochorismatase family protein pncA, put 0.994 0.691 0.774 3e-86
224161248197 predicted protein [Populus trichocarpa] 0.994 0.944 0.784 4e-86
388508362245 unknown [Lotus japonicus] 0.994 0.759 0.779 7e-86
388491036245 unknown [Medicago truncatula] 0.994 0.759 0.774 9e-86
449516661243 PREDICTED: uncharacterized isochorismata 0.973 0.748 0.730 2e-79
449438220243 PREDICTED: uncharacterized isochorismata 0.973 0.748 0.730 2e-79
225464087248 PREDICTED: uncharacterized isochorismata 1.0 0.754 0.700 4e-77
224084455246 predicted protein [Populus trichocarpa] 0.973 0.739 0.661 2e-72
>gi|388517859|gb|AFK46991.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 146/186 (78%), Positives = 166/186 (89%)

Query: 1   MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPN 60
           MINESARLAR FC++ LPVMAFLD+HHPNKPEDPYP HCIAGT ESNLVPAL+W+E E N
Sbjct: 59  MINESARLARLFCEKNLPVMAFLDSHHPNKPEDPYPPHCIAGTDESNLVPALRWLENETN 118

Query: 61  VTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNR 120
           VT+RRK+CFDGY GS E+DGSNVFVDWVK ++IR L+VVG+CTDICVLDFVCSTMSA+NR
Sbjct: 119 VTLRRKECFDGYIGSTEEDGSNVFVDWVKKNKIRTLLVVGICTDICVLDFVCSTMSAKNR 178

Query: 121 GFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLS 180
           GFL+PLE VVVYS  CATFD+P  VA +TKGALAHPQEF+HH+GLYMAKERGAKIAN++S
Sbjct: 179 GFLKPLENVVVYSHGCATFDVPLEVARNTKGALAHPQEFLHHMGLYMAKERGAKIANEVS 238

Query: 181 FSEQTK 186
           F    K
Sbjct: 239 FGAVEK 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224093276|ref|XP_002309862.1| predicted protein [Populus trichocarpa] gi|222852765|gb|EEE90312.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357476213|ref|XP_003608392.1| Isochorismatase family protein pncA, putative [Medicago truncatula] gi|217073560|gb|ACJ85140.1| unknown [Medicago truncatula] gi|355509447|gb|AES90589.1| Isochorismatase family protein pncA, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|224161248|ref|XP_002338310.1| predicted protein [Populus trichocarpa] gi|222871838|gb|EEF08969.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388508362|gb|AFK42247.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388491036|gb|AFK33584.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449516661|ref|XP_004165365.1| PREDICTED: uncharacterized isochorismatase family protein PncA-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449438220|ref|XP_004136887.1| PREDICTED: uncharacterized isochorismatase family protein PncA-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225464087|ref|XP_002270896.1| PREDICTED: uncharacterized isochorismatase family protein pncA [Vitis vinifera] gi|147771197|emb|CAN72022.1| hypothetical protein VITISV_006364 [Vitis vinifera] gi|296088776|emb|CBI38226.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224084455|ref|XP_002307303.1| predicted protein [Populus trichocarpa] gi|222856752|gb|EEE94299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
TAIR|locus:2041298244 NIC1 "nicotinamidase 1" [Arabi 0.967 0.741 0.662 4e-67
TAIR|locus:2041298 NIC1 "nicotinamidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 120/181 (66%), Positives = 146/181 (80%)

Query:     1 MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPN 60
             M+ ESA+LAR FCDR+ PV+AF+D+HHP+ PE PYP HCI GT ES LVPAL+W+E E  
Sbjct:    62 MVEESAKLAREFCDRKWPVLAFIDSHHPDIPERPYPPHCIIGTEESELVPALKWLESEDC 121

Query:    61 VTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNR 120
              T+RRKDC +G+ GS+E DGSNVFVDWVK  QI+ +VVVG+CTDICV DFV + +SARN 
Sbjct:   122 ATLRRKDCINGFVGSMESDGSNVFVDWVKEKQIKVIVVVGICTDICVFDFVATALSARNH 181

Query:   121 GFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLS 180
             G L P+E+VVVYS  CATFD+P HVA   KGA AHPQE MHHVGLYMAK RGA++ +++S
Sbjct:   182 GVLSPVEDVVVYSRGCATFDLPLHVAKDIKGAQAHPQELMHHVGLYMAKGRGAQVVSKIS 241

Query:   181 F 181
             F
Sbjct:   242 F 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       187   0.00085  110 3  11 22  0.39    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  182 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.09u 0.12s 16.21t   Elapsed:  00:00:00
  Total cpu time:  16.09u 0.12s 16.21t   Elapsed:  00:00:00
  Start:  Thu May  9 20:11:41 2013   End:  Thu May  9 20:11:41 2013
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008936 "nicotinamidase activity" evidence=IMP;IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0019365 "pyridine nucleotide salvage" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VII1188
nicotinamidase (245 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
PLN02743239 PLN02743, PLN02743, nicotinamidase 1e-124
cd00431161 cd00431, cysteine_hydrolases, Cysteine hydrolases; 1e-25
pfam00857173 pfam00857, Isochorismatase, Isochorismatase family 2e-21
COG1335205 COG1335, PncA, Amidases related to nicotinamidase 3e-15
cd01011196 cd01011, nicotinamidase, Nicotinamidase/pyrazinami 5e-11
PTZ00331212 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisio 6e-06
cd01014155 cd01014, nicotinamidase_related, Nicotinamidase_ r 2e-04
PRK11609212 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; 3e-04
>gnl|CDD|215396 PLN02743, PLN02743, nicotinamidase Back     alignment and domain information 
 Score =  349 bits (897), Expect = e-124
 Identities = 127/181 (70%), Positives = 154/181 (85%)

Query: 1   MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPN 60
           M++ESARLAR FC+R+ PV+AFLD+HHP+KPE PYP HCI GT E NLVPALQW+E +PN
Sbjct: 59  MVDESARLAREFCERKWPVLAFLDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPN 118

Query: 61  VTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNR 120
           VT+RRKDC DG+ G+IE DGSNVFVDWV N++I+ ++VVG+CTDICVLDFV S +SARN 
Sbjct: 119 VTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGICTDICVLDFVASALSARNH 178

Query: 121 GFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLS 180
           G L PLE+VVVYS  CAT+D+P HVA   KGALAHPQE MHH+GLYMAK RGAK+ +++S
Sbjct: 179 GILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSKVS 238

Query: 181 F 181
           F
Sbjct: 239 F 239

Length = 239
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family Back     alignment and domain information
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
PLN02743239 nicotinamidase 100.0
PRK11609212 nicotinamidase/pyrazinamidase; Provisional 100.0
cd01015179 CSHase N-carbamoylsarcosine amidohydrolase (CSHase 99.97
cd01011196 nicotinamidase Nicotinamidase/pyrazinamidase (PZas 99.97
PLN02621197 nicotinamidase 99.97
PF00857174 Isochorismatase: Isochorismatase family; InterPro: 99.97
PRK11440188 putative hydrolase; Provisional 99.97
TIGR03614226 RutB pyrimidine utilization protein B. RL Proc Nat 99.97
cd01013203 isochorismatase Isochorismatase, also known as 2,3 99.97
PTZ00331212 alpha/beta hydrolase; Provisional 99.96
COG1335205 PncA Amidases related to nicotinamidase [Secondary 99.96
cd00431161 cysteine_hydrolases Cysteine hydrolases; This fami 99.96
cd01014155 nicotinamidase_related Nicotinamidase_ related ami 99.95
cd01012157 YcaC_related YcaC related amidohydrolases; E.coli 99.95
COG1535218 EntB Isochorismate hydrolase [Secondary metabolite 99.87
KOG4003223 consensus Pyrazinamidase/nicotinamidase PNC1 [Defe 99.78
KOG4044201 consensus Mitochondrial associated endoribonucleas 99.54
>PLN02743 nicotinamidase Back     alignment and domain information 
Probab=100.00  E-value=3.7e-40  Score=274.29  Aligned_cols=181  Identities=70%  Similarity=1.287  Sum_probs=160.9

Q ss_pred             ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCCCCCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccccCCC
Q 029834            1 MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDG   80 (187)
Q Consensus         1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~~~~   80 (187)
                      +++++++|+++||++|+||||+++.|.++..+..||+||+.||+|++++++|.+.+++....++.|+++|+|+++....+
T Consensus        59 iv~~i~~Ll~~aR~~g~pVI~~~d~h~~~~~~~~~~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~  138 (239)
T PLN02743         59 MVDESARLAREFCERKWPVLAFLDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVTLRRKDCIDGFVGAIEKDG  138 (239)
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEeCccCCCccccCCCCccCCCCcccccchhhCCCCCCceEEEEecCccccccccccccC
Confidence            36789999999999999999999999877666789999999999999999999865443334778999999998633222


Q ss_pred             cchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHH
Q 029834           81 SNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFM  160 (187)
Q Consensus        81 ~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~  160 (187)
                      ++.|.++|+++||++|+|+|++||+||.||.+|+++|+++||..|+.+|+|++|||++++.+.|.+..++++..|+++.+
T Consensus       139 t~~L~~~Lr~~gI~~liv~Gv~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~  218 (239)
T PLN02743        139 SNVFVDWVNNNKIKVILVVGICTDICVLDFVASALSARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELM  218 (239)
T ss_pred             ccHHHHHHHHCCCCEEEEEEeCcchhccChHHHHHHHHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHH
Confidence            23489999999999999999999999998889999999999966777899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCcEeecccch
Q 029834          161 HHVGLYMAKERGAKIANQLSF  181 (187)
Q Consensus       161 h~~~l~~~~~~~~~v~~~~~~  181 (187)
                      |..+|++|+.+|++|++.+.|
T Consensus       219 ~~~~~~~~~~~~~~v~~~~~~  239 (239)
T PLN02743        219 HHMGLYMAKGRGAKVVSKVSF  239 (239)
T ss_pred             HHHHHHHHHhCCcEeeeeecC
Confidence            999999999999999987653

>PRK11609 nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>PLN02621 nicotinamidase Back     alignment and domain information
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes Back     alignment and domain information
>PRK11440 putative hydrolase; Provisional Back     alignment and domain information
>TIGR03614 RutB pyrimidine utilization protein B Back     alignment and domain information
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>PTZ00331 alpha/beta hydrolase; Provisional Back     alignment and domain information
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>cd01012 YcaC_related YcaC related amidohydrolases; E Back     alignment and domain information
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms] Back     alignment and domain information
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
2wt9_A235 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 5e-04
2wta_A213 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 7e-04
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease Length = 235 Back     alignment and structure 
Iteration: 1

 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 35  YPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCF----DGYFGSIEDDGSNV--FVDWV 88
           +P HCI GTH++   P L      P   +  +  F    D Y   +E D + +     ++
Sbjct: 107 WPKHCIQGTHDAEFHPDL----NIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYL 162
Query: 89  KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATH 148
           K   I  + VVG+ TD CV     + + A  +GF     + +V   AC   D+       
Sbjct: 163 KERGIDTVYVVGIATDFCV---AWTALDAVKQGF-----KTLVIEDACKGIDL------- 207
Query: 149 TKGALAHPQEFMHHVGL 165
             G+L    + M   G+
Sbjct: 208 -NGSLEQAWQTMQQQGV 223

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 2e-23
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 3e-23
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 1e-22
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 2e-22
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 6e-22
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 2e-19
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 5e-19
3hu5_A204 Isochorismatase family protein; structural genomic 6e-18
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 6e-18
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 2e-16
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 2e-15
3txy_A199 Isochorismatase family protein family; structural 6e-15
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 6e-14
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 8e-14
3kl2_A226 Putative isochorismatase; structural genomics, unk 2e-13
3lqy_A190 Putative isochorismatase hydrolase; structural gen 7e-13
1j2r_A199 Hypothetical isochorismatase family protein YECD; 2e-12
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 3e-12
3oqp_A211 Putative isochorismatase; catalytic triad, structu 1e-11
3mcw_A198 Putative hydrolase; isochorismatase family, struct 3e-11
2a67_A167 Isochorismatase family protein; structural genomic 1e-09
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 3e-06
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180 Back     alignment and structure
 Score = 90.3 bits (225), Expect = 2e-23
 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 29/152 (19%)

Query: 6   ARLARAFCDRRLPVMAFLDTHHPNKPE-----DPYPTHCIAGTHESNLVPALQ----WIE 56
               R F ++   ++A  D H  N         P+P HC+  T  +  V  L      I 
Sbjct: 34  NEYIRKFKEKGALIVATRDWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIIS 93

Query: 57  KEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTM- 115
           K           F+G                ++ + ++++ + GV T+ CV     +T  
Sbjct: 94  KATEPDKEAYSGFEG----------TDLAKILRGNGVKRVYICGVATEYCVR----ATAL 139

Query: 116 SARNRGFLRPLEEVVVYSAACATFDIPTHVAT 147
            A   GF     EV +   A            
Sbjct: 140 DALKHGF-----EVYLLRDAVKGIKPEDEERA 166
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Length = 182 Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* Length = 211 Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Length = 204 Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Length = 227 Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Length = 235 Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Length = 204 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Length = 287 Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Length = 207 Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Length = 216 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} Length = 199 Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Length = 233 Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Length = 236 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} Length = 226 Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Length = 199 Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Length = 264 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Length = 208 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 100.0
3lqy_A190 Putative isochorismatase hydrolase; structural gen 100.0
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 100.0
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 100.0
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 100.0
3hu5_A204 Isochorismatase family protein; structural genomic 100.0
4h17_A197 Hydrolase, isochorismatase family; rossmann-like f 100.0
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 100.0
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 100.0
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 99.98
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 99.98
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 99.98
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 99.98
3oqp_A211 Putative isochorismatase; catalytic triad, structu 99.98
3mcw_A198 Putative hydrolase; isochorismatase family, struct 99.98
3kl2_A226 Putative isochorismatase; structural genomics, unk 99.98
2a67_A167 Isochorismatase family protein; structural genomic 99.97
1j2r_A199 Hypothetical isochorismatase family protein YECD; 99.97
3tg2_A223 Vibriobactin-specific isochorismatase; hydrolase; 99.97
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 99.97
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 99.97
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 99.97
3txy_A199 Isochorismatase family protein family; structural 99.97
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 99.94
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 99.93
1x9g_A200 Putative MAR1; structural genomics, protein struct 99.92
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 99.92
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Back     alignment and structure
Probab=100.00  E-value=8.1e-35  Score=235.33  Aligned_cols=148  Identities=20%  Similarity=0.309  Sum_probs=135.9

Q ss_pred             ChHHHHHHHHHHh---hCCCcEEEEeeeCCCCCCC-CCCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccc
Q 029834            1 MINESARLARAFC---DRRLPVMAFLDTHHPNKPE-DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSI   76 (187)
Q Consensus         1 ~i~~i~~li~~~r---~~g~pVv~t~d~h~~~~~~-~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~   76 (187)
                      ++++|++|+++||   ++|+||||+++.|.+.+++ ..||+||++|++|++++++|.+.+   .+.+|.|++||+|+++ 
T Consensus        34 ii~~i~~Ll~~ar~~~~~g~pVi~t~~~~~~~~~~~~~~~~~~~~gt~g~~i~~~l~~~~---~~~vi~K~~~saF~~t-  109 (204)
T 3hb7_A           34 IIPDLQKIFEWVRGREGDDIHLVHIQEAHRKNDADFRVRPLHAVKGTWGSDFIPELYPQE---DEYIVQKRRHSGFAHT-  109 (204)
T ss_dssp             GHHHHHHHHHHHHHSSSSSEEEEEEEECBCCCSCCSSSSCSSCBTTSTTTSBCGGGCCCT---TCEEEEESSSSTTTTS-
T ss_pred             HHHHHHHHHHHHHhhhhcCCEEEEEEccCCCCChhhhhcchhccCCCchhhcCHhhCCCC---CCEEEeCCccCCccCc-
Confidence            4789999999999   9999999999999876665 479999999999999999999875   3578999999999985 


Q ss_pred             cCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCc
Q 029834           77 EDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHP  156 (187)
Q Consensus        77 ~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~  156 (187)
                            +|.++|+++|+++|+|||++||+||.   +|+++|+++||     +|+|++|||++++++.             
T Consensus       110 ------~L~~~L~~~gi~~lvi~G~~T~~CV~---~Ta~dA~~~Gy-----~V~vv~Da~as~~~~~-------------  162 (204)
T 3hb7_A          110 ------DLDLYLKEEGIDTVVLTGVWTNVCVR---STATDALANAY-----KVITLSDGTASKTEEM-------------  162 (204)
T ss_dssp             ------SHHHHHHHTTCCEEEEEEECTTTHHH---HHHHHHHHTTC-----EEEEEEEEEECSSHHH-------------
T ss_pred             ------cHHHHHHHCCCCEEEEEeecccHHHH---HHHHHHHHCCC-----EEEEechhccCCCHHH-------------
Confidence                  99999999999999999999999999   99999999999     9999999999998653             


Q ss_pred             HHHHHHHHHHHHHHcCcEeecccchhhh
Q 029834          157 QEFMHHVGLYMAKERGAKIANQLSFSEQ  184 (187)
Q Consensus       157 ~~~~h~~~l~~~~~~~~~v~~~~~~~~~  184 (187)
                          |+.+|..|+ .|+.|+++++++..
T Consensus       163 ----h~~al~~l~-~~a~v~tt~~vl~~  185 (204)
T 3hb7_A          163 ----HEYGLNDLS-IFTKVMTVDQYIQA  185 (204)
T ss_dssp             ----HHHHHHHHH-HHSEEECHHHHHHH
T ss_pred             ----HHHHHHHHH-hCCEEeeHHHHHHH
Confidence                788999999 99999999888754
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Back     alignment and structure
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440} Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A* Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 187
d1im5a_179 c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa 8e-12
d1j2ra_188 c.33.1.3 (A:) Hypothetical protein YecD {Escherich 8e-11
d1nbaa_253 c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase 2e-10
d1nf9a_207 c.33.1.3 (A:) Phenazine biosynthesis protein PhzD 8e-10
d1yaca_204 c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} 5e-07
d1x9ga_192 c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova 4e-05
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: Pyrazinamidase/nicotinamidase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 58.7 bits (141), Expect = 8e-12
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 1   MINESARLARAFCDRRLPVMAFLDTHHPNKPE-----DPYPTHCIAGTHESNLVPAL-QW 54
           +I +     R F ++   ++A  D H  N         P+P HC+  T  +  V  L + 
Sbjct: 28  IIPKVNEYIRKFKEKGALIVATRDWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLPED 87

Query: 55  IEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCST 114
                  T   K+ + G+ G             ++ + ++++ + GV T+ CV     + 
Sbjct: 88  AVIISKATEPDKEAYSGFEG-------TDLAKILRGNGVKRVYICGVATEYCVR---ATA 137

Query: 115 MSARNRGFLRPLEEVVVYSAACATFDIPTHVAT 147
           + A   GF     EV +   A            
Sbjct: 138 LDALKHGF-----EVYLLRDAVKGIKPEDEERA 165
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Length = 188 Back     information, alignment and structure
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Length = 253 Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Length = 207 Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
d1nbaa_253 N-carbamoylsarcosine amidohydrolase {Arthrobacter 99.97
d1nf9a_207 Phenazine biosynthesis protein PhzD {Pseudomonas a 99.97
d1j2ra_188 Hypothetical protein YecD {Escherichia coli [TaxId 99.97
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 99.97
d1yaca_204 YcaC {Escherichia coli [TaxId: 562]} 99.93
d1x9ga_192 Ribonuclease MAR1 {Leishmania donovani [TaxId: 566 99.84
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: N-carbamoylsarcosine amidohydrolase
species: Arthrobacter sp. [TaxId: 1667]

Probab=99.97  E-value=2.8e-32  Score=225.54  Aligned_cols=149  Identities=13%  Similarity=0.147  Sum_probs=132.9

Q ss_pred             ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCCC------C-----CCCCccCCCCCCccccccccccCCCceEEEeCCcc
Q 029834            1 MINESARLARAFCDRRLPVMAFLDTHHPNKPED------P-----YPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCF   69 (187)
Q Consensus         1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~~------~-----~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~   69 (187)
                      +++++++|+++||++|+||||+++.|.+++.+.      .     ++.+|..|++|++++++|.|.+   .+.+|.|+++
T Consensus        65 iv~~i~~Li~aaR~~gipVI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ga~i~~~l~p~~---~d~vi~K~~~  141 (253)
T d1nbaa_          65 IIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPAD---GEVVIEKNRA  141 (253)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEECBSCCCTTSTTCSCGGGGGTSCGGGCBTTSGGGSBCGGGCCCT---TCEEEEESSS
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEeccCCCccccccccccccccccCccccCCCCcccccccccCCCC---CCeeeecccc
Confidence            378999999999999999999999887665431      1     2356778999999999999876   4689999999


Q ss_pred             ccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhc
Q 029834           70 DGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHT  149 (187)
Q Consensus        70 saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~  149 (187)
                      |+|+++       +|..+|+++||++|||||++||+||.   +|+++|+++||     +|+|++|||++++++.      
T Consensus       142 SaF~~T-------~L~~~Lr~~gI~~liv~Gv~Td~CV~---~Ta~dA~~~Gy-----~V~Vv~DA~as~~~e~------  200 (253)
T d1nbaa_         142 SAFPGT-------NLELFLTSNRIDTLIVTGATAAGCVR---HTVEDAIAKGF-----RPIIPRETIGDRVPGV------  200 (253)
T ss_dssp             SSSTTS-------SHHHHHHHTTCCEEEEEEECTTTHHH---HHHHHHHHHTC-----EEEEEGGGEECSSSSH------
T ss_pred             ccccCc-------cHHHHHhhhccceEEEEeecccchHH---HHHHHHHHCCC-----EEEEeccccCCCCHHH------
Confidence            999995       99999999999999999999999999   99999999999     9999999999998764      


Q ss_pred             ccccCCcHHHHHHHHHHHHHHcCcEeecccchhhh
Q 029834          150 KGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQ  184 (187)
Q Consensus       150 ~~~~~~~~~~~h~~~l~~~~~~~~~v~~~~~~~~~  184 (187)
                                 |+.+|..|+.+++.|++++++++.
T Consensus       201 -----------h~~aL~~m~~~~g~V~~t~eil~~  224 (253)
T d1nbaa_         201 -----------VQWNLYDIDNKFGDVESTDSVVQY  224 (253)
T ss_dssp             -----------HHHHHHHHHHHTCEEECHHHHHHH
T ss_pred             -----------HHHHHHHHHhcCCEEecHHHHHHH
Confidence                       689999999999999999887753
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Back     information, alignment and structure