Citrus Sinensis ID: 029850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MALGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccccccccccHHHHHHHcccccccEEEEEcccccccccEEEcccccccccccHHHHHHHccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcHHHHHHHHHHHHHcccccccHHcEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEccc
Coil and Loop (DISEMBL)
MALGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALigigsigevpillakpqaymnfsgesvgplaahyqvpLRHILVIYDEmslmngvlrlqpkgghghhnglKSVMNHLdgcrefprlcigignppgkmDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGfdqnisrfnmgqkykyhav
Flexible Loop (DISEMBL)
MALGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNgfdqnisrfnmgqkykyhav
Low Complexity Region (SEG)
MALGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Disordered region (IsUnstruct)
**LGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ*******
Disordered Region (DISOPRED)
*ALGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISR************
Disordered Region (DISEMBL)
MALGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Disordered Region (DISPRO)
*ALGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALGTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9FKN4	246	Chloroplastic group IIB i	yes	no	0.951	0.719	0.762	5e-79
Q9LF14	240	Chloroplastic group IIB i	no	no	0.946	0.733	0.767	2e-75
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.946	0.679	0.732	4e-73
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.946	0.687	0.727	9e-73
Q6NLS8	219	Peptidyl-tRNA hydrolase,	no	no	0.930	0.789	0.572	1e-52
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.892	0.576	0.524	2e-49
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.913	0.68	0.517	3e-48
Q181A2	186	Peptidyl-tRNA hydrolase O	yes	no	0.892	0.892	0.371	5e-32
A9KR32	191	Peptidyl-tRNA hydrolase O	yes	no	0.892	0.869	0.413	3e-30
B8G3X3	188	Peptidyl-tRNA hydrolase O	yes	no	0.887	0.877	0.383	2e-28

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  293 bits (750), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 155/177 (87%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            +GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGESVGPLAA+Y
Sbjct: 70  NIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYY 129

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           Q+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL IGIGNPPG
Sbjct: 130 QIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPG 189

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQKYK+H V
Sbjct: 190 NMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 246

Required for the splicing of group IIB introns in chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/176 (76%), Positives = 156/176 (88%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEMID +A+ + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+
Sbjct: 65  VGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYR 124

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYDEM+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG 
Sbjct: 125 VPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGN 184

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
           MDMKA+LLQKFSP+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct: 185 MDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  273 bits (699), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 152/176 (86%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA+ + I MNTIQSK+L+GIGSIGEVP+LL KPQ+Y+N+SGE++GPLAA+YQ
Sbjct: 84  VGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQ 143

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHILV+YDEMSL NGVLRLQ KGGHG HNGL++VM  LD  RE PRL IGIG+PPGK
Sbjct: 144 VPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGK 203

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
           MD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +I RFN+ QKYK+H+V
Sbjct: 204 MDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  272 bits (696), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/176 (72%), Positives = 151/176 (85%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 81  VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 140

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 141 VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 200

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
           MD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ QKYK+H V
Sbjct: 201 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 131/173 (75%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           +GFEMID  A++  I MN +  KA++G G + ++P++LAKPQ YMN SGES GPLAA+Y+
Sbjct: 38  IGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYK 97

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           +PL  +LV++D+M L  GVLRLQ KGGHG HNGLKSVMNH  G REF RL IGIG PPG+
Sbjct: 98  LPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQ 157

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKY 183
           MD KA+LLQKFS   RE++D AL +GV+A++ ++   F ++   FN+ QKYK+
Sbjct: 158 MDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKH 210

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 126/166 (75%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAKPQ +MN SGESVG + + Y+
Sbjct: 114 VGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYK 173

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           +PL+ +LV+YD++ L  G LRL PKGGHG HNG++S+++ L G R+FPRL IGIG PPGK
Sbjct: 174 IPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGK 233

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
           MD   ++L++F+  E+E++D   + G+EA+R L+L GF+++ +  N
Sbjct: 234 MDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVN 279

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 128/170 (75%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            VGFEMID IA+A+ I+++++Q KA++G G IG+ PI+LAKPQ +MN SGESVG L +++
Sbjct: 74  NVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYF 133

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++PL  +LV+YD++ L    LRL PKGGHG HNG++S++NHL   R+FPRL IGIG PPG
Sbjct: 134 KIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPG 193

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 179
           KMD   ++L+ F+  E+E++D A  +G+EAVR + L GF+++ +  N  Q
Sbjct: 194 KMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQ 243

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 107/167 (64%), Gaps = 1/167 (0%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            VGF++ID +A+   I++  I+ KALIG G +G   +LL KPQ YMN SGE++  +  +Y
Sbjct: 20  NVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKPQTYMNLSGETLIDIYKYY 79

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           +V L +I+V+YD++ L  G +R++ KG  G HNG+KS+   L G  +FPR+ +G+  P  
Sbjct: 80  KVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL-GSNDFPRVRVGVSKPEA 138

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
             D+  ++L +F   E + I+ ALE+  +A+ +++    D +++++N
Sbjct: 139 GQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMSMNKYN 185

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|A9KR32|PTH_CLOPH Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 1/167 (0%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            +GF+ I  +A    I+++T + KA+ G G IG   ++LAKPQ YMN SGESV  L   Y
Sbjct: 20  NIGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKPQTYMNLSGESVRELIDFY 79

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           +V    I+VIYD++SL  G LR++ KG  G HNG+K+++ HL G  EF R+ IG+G+ P 
Sbjct: 80  KVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAHL-GSDEFCRIKIGVGDKPK 138

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
             D+  Y+L +F   E   I  ALE+  +A  T++ +G    ++ FN
Sbjct: 139 NWDLADYVLARFPKEEEPAIREALEKVSKACETILRDGAKVAMNLFN 185

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (taxid: 357809)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 98/167 (58%), Gaps = 2/167 (1%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           +GF  ++ +A+   +     ++K+ I  G I    + L KPQ YMN SG++V  L   Y+
Sbjct: 21  IGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKPQTYMNLSGQAVAALRQWYK 80

Query: 71  V-PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           + P R +LVIYD++ L    LRL+ +G  G HNG++S++  L G  EFPRL IGIG PPG
Sbjct: 81  IDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPG 139

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
           +MD   Y+L +F+P E   +   L +  +AV  +V  G    ++R+N
Sbjct: 140 QMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYN 186

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
255551384	253	peptidyl-tRNA hydrolase, putative [Ricin	0.946	0.695	0.852	5e-85
224079329	244	predicted protein [Populus trichocarpa]	0.951	0.725	0.836	8e-85
449455782	249	PREDICTED: chloroplastic group IIB intro	0.946	0.706	0.840	6e-83
225452074	246	PREDICTED: chloroplastic group IIB intro	0.951	0.719	0.819	3e-80
358248120	244	uncharacterized protein LOC100804132 [Gl	0.951	0.725	0.790	6e-79
297805938	241	predicted protein [Arabidopsis lyrata su	0.951	0.734	0.779	1e-78
357508117	251	Chloroplastic group IIB intron splicing	0.951	0.705	0.757	1e-77
42573527	250	chloroplastic group IIB intron splicing	0.951	0.708	0.762	2e-77
15240875	246	chloroplastic group IIB intron splicing	0.951	0.719	0.762	2e-77
357520293	243	Chloroplastic group IIB intron splicing	0.951	0.728	0.762	5e-77

>gi|255551384|ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223544111|gb|EEF45636.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 150/176 (85%), Positives = 164/176 (93%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEMID IA+A+ +AMNTIQSKALIGIG I EVPILL KPQAYMNFSGESVGPLAAHYQ
Sbjct: 78  VGFEMIDKIAKAEAVAMNTIQSKALIGIGCIKEVPILLVKPQAYMNFSGESVGPLAAHYQ 137

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYDEMSL NGV+RLQPKGGHGHHNG+KSVM HLDGCREFPRLCIGIGNPPG 
Sbjct: 138 VPLRHILLIYDEMSLPNGVMRLQPKGGHGHHNGVKSVMEHLDGCREFPRLCIGIGNPPGT 197

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
           MDM+A+LLQKFS  EREQIDAAL QG++AVRTLVL+GF+QNI+RFN+GQKYKYH V
Sbjct: 198 MDMRAFLLQKFSSTEREQIDAALGQGIDAVRTLVLSGFNQNITRFNLGQKYKYHKV 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079329|ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|222848787|gb|EEE86334.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (814), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 148/177 (83%), Positives = 164/177 (92%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            VGFEMID IAQA+ + MNTIQSKALIGIG IGEVPILLAKPQAYMNFSGESVGPLAAHY
Sbjct: 68  NVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNFSGESVGPLAAHY 127

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++PLRHIL+IYDEM+L NG+LR+QPKGGHGHHNG+KSVM+HLDGCREFPRLCIGIGNPPG
Sbjct: 128 KIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCREFPRLCIGIGNPPG 187

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MDMKA+LLQKFSP EREQIDA+LEQGVEA+RTL+L GF   I+RFN+GQKYKYH V
Sbjct: 188 TMDMKAFLLQKFSPTEREQIDASLEQGVEAMRTLILGGFTNKITRFNLGQKYKYHKV 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455782|ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus] gi|449519774|ref|XP_004166909.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus]

 Score =  311 bits (798), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 148/176 (84%), Positives = 159/176 (90%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEMID IAQAQ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNF GESVGPLAAHYQ
Sbjct: 74  VGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQ 133

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           +PLRH+L+ YDEM+L NGVLRLQPK GHGHHNG+KSVM HLDG REFPRLCIGIGNPPG 
Sbjct: 134 IPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGT 193

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
           MDMKA+LLQKFS +ER+QIDAALEQGVEAVRTL LNGF Q ++RFN+ QKYKYH V
Sbjct: 194 MDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452074|ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic [Vitis vinifera] gi|296087264|emb|CBI33638.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/177 (81%), Positives = 160/177 (90%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            VGFEMID I+Q + I +NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAA+Y
Sbjct: 70  NVGFEMIDRISQEEGILLNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAYY 129

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           QVPLRHILV+YDEM+L NGVLRL P+GGHG+HNGLK+VM HLDGCREFPRLCIGIGNPPG
Sbjct: 130 QVPLRHILVVYDEMNLPNGVLRLAPRGGHGYHNGLKNVMGHLDGCREFPRLCIGIGNPPG 189

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MDMKAYLLQKFS  ER+QIDAA EQG+ AVR LVLNGF+ + +RFN+GQKYKYH V
Sbjct: 190 TMDMKAYLLQKFSFEERKQIDAAQEQGIGAVRNLVLNGFNHSTTRFNLGQKYKYHKV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248120|ref|NP_001239818.1| uncharacterized protein LOC100804132 [Glycine max] gi|255645504|gb|ACU23247.1| unknown [Glycine max]

 Score =  298 bits (763), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 140/177 (79%), Positives = 160/177 (90%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            VGFE+ID +++A+ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNFSGESVGPLAA+Y
Sbjct: 68  NVGFEIIDSLSRAEGIQMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGESVGPLAAYY 127

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           QVPLRHIL+++DE SL NGVLRLQPKGGHGHHNGLK+VM HLDGC  FPRL +GIGNPPG
Sbjct: 128 QVPLRHILLVFDETSLPNGVLRLQPKGGHGHHNGLKNVMGHLDGCSAFPRLAVGIGNPPG 187

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MD++AYLLQKFS  ER+QIDA+LEQ V AVRT+VLNGFDQ+++RFN+GQKYKYH V
Sbjct: 188 TMDLRAYLLQKFSVEERKQIDASLEQAVAAVRTVVLNGFDQHVNRFNLGQKYKYHKV 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805938|ref|XP_002870853.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316689|gb|EFH47112.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 157/177 (88%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            +GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQAYMNFSGESVGPLAA+Y
Sbjct: 65  NIGFEMIDHIARATEISMNTIQSKALVGIGSVGEVPILLVKPQAYMNFSGESVGPLAAYY 124

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           Q+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL IGIGNPPG
Sbjct: 125 QIPLRHILMIYDDMGLPNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPG 184

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MDMKA+LLQKFSP+ER+QIDA LEQGVE V+TLV  GF  +ISRFN+GQKYK+H V
Sbjct: 185 NMDMKAFLLQKFSPLERKQIDAGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHTV 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508117|ref|XP_003624347.1| Chloroplastic group IIB intron splicing facilitator CRS2-B [Medicago truncatula] gi|355499362|gb|AES80565.1| Chloroplastic group IIB intron splicing facilitator CRS2-B [Medicago truncatula]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/177 (75%), Positives = 162/177 (91%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            VGFE+ID ++Q++ I MNTIQSKALIGIGSIGEVP+LLAKPQ YMNFSGESVGPLAA+Y
Sbjct: 75  NVGFEIIDSLSQSEGILMNTIQSKALIGIGSIGEVPVLLAKPQTYMNFSGESVGPLAAYY 134

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           +VPLRHILV+YDE SL NGVL+LQPKGGHGHHNGLK+V+ HLDG R+FPRL IGIGNPPG
Sbjct: 135 RVPLRHILVVYDETSLPNGVLKLQPKGGHGHHNGLKNVIGHLDGSRDFPRLAIGIGNPPG 194

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MD++A+LLQKFS +ER+Q+D +LEQGV+AV+TLVLNGF+ +++RFN+GQKYKY+ V
Sbjct: 195 TMDLRAFLLQKFSSVERKQVDESLEQGVQAVKTLVLNGFNHHVNRFNLGQKYKYNKV 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573527|ref|NP_974860.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|332006907|gb|AED94290.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 155/177 (87%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            +GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGESVGPLAA+Y
Sbjct: 74  NIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYY 133

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           Q+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL IGIGNPPG
Sbjct: 134 QIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPG 193

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQKYK+H V
Sbjct: 194 NMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240875|ref|NP_198645.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|75309164|sp|Q9FKN4.1|CRS2A_ARATH RecName: Full=Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic; AltName: Full=CRS2-like protein A; AltName: Full=Chloroplastic RNA splicing factor 2-A; Flags: Precursor gi|9758861|dbj|BAB09443.1| unnamed protein product [Arabidopsis thaliana] gi|90962962|gb|ABE02405.1| At5g38290 [Arabidopsis thaliana] gi|332006908|gb|AED94291.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 155/177 (87%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            +GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGESVGPLAA+Y
Sbjct: 70  NIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYY 129

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           Q+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL IGIGNPPG
Sbjct: 130 QIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPG 189

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQKYK+H V
Sbjct: 190 NMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520293|ref|XP_003630435.1| Chloroplastic group IIB intron splicing facilitator CRS2-B [Medicago truncatula] gi|355524457|gb|AET04911.1| Chloroplastic group IIB intron splicing facilitator CRS2-B [Medicago truncatula]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 162/177 (91%)

Query: 10  QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            VGFE+ID ++Q+Q I MNTIQSKALIGIGSIGEVP+LLAKPQ YMNFSGESVGPLAA+Y
Sbjct: 67  NVGFEIIDSLSQSQGILMNTIQSKALIGIGSIGEVPVLLAKPQTYMNFSGESVGPLAAYY 126

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           +VPLRHILV+YDE SL +GVL+LQPKGGHGHHNGLK+V+ HLDG R+FPRL IGIGNPPG
Sbjct: 127 RVPLRHILVVYDETSLPSGVLKLQPKGGHGHHNGLKNVIGHLDGSRDFPRLAIGIGNPPG 186

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
            MD++A+LLQKFS +ER+Q+D +LEQGV+AVRTLVLNGF+ +++RFN+GQKYKY+ V
Sbjct: 187 TMDLRAFLLQKFSSVERKQVDESLEQGVQAVRTLVLNGFNHHVNRFNLGQKYKYNRV 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.946	0.704	0.767	1.2e-72
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.946	0.733	0.767	7e-70
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.930	0.789	0.572	7.4e-50
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.892	0.576	0.524	3e-46
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.887	0.882	0.395	1e-27
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.887	0.887	0.355	2.2e-25
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.741	0.722	0.417	5.9e-25
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.887	0.873	0.349	1.5e-21
TIGR_CMR|VC_2184	196	VC_2184 "peptidyl-tRNA hydrola	0.887	0.841	0.319	1.2e-19
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.876	0.844	0.321	5.1e-19

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 135/176 (76%), Positives = 155/176 (88%)

Query:    11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
             +GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGESVGPLAA+YQ
Sbjct:    75 IGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQ 134

Query:    71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
             +PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL IGIGNPPG 
Sbjct:   135 IPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGN 194

Query:   131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
             MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQKYK+H V
Sbjct:   195 MDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 250

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 135/176 (76%), Positives = 156/176 (88%)

Query:    11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
             VGFEMID +A+ + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+
Sbjct:    65 VGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYR 124

Query:    71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
             VPLRHIL+IYDEM+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG 
Sbjct:   125 VPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGN 184

Query:   131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
             MDMKA+LLQKFSP+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct:   185 MDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 99/173 (57%), Positives = 131/173 (75%)

Query:    11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
             +GFEMID  A++  I MN +  KA++G G + ++P++LAKPQ YMN SGES GPLAA+Y+
Sbjct:    38 IGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYK 97

Query:    71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
             +PL  +LV++D+M L  GVLRLQ KGGHG HNGLKSVMNH  G REF RL IGIG PPG+
Sbjct:    98 LPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQ 157

Query:   131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKY 183
             MD KA+LLQKFS   RE++D AL +GV+A++ ++   F ++   FN+ QKYK+
Sbjct:   158 MDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKH 210

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 87/166 (52%), Positives = 126/166 (75%)

Query:    11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
             VGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAKPQ +MN SGESVG + + Y+
Sbjct:   114 VGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYK 173

Query:    71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
             +PL+ +LV+YD++ L  G LRL PKGGHG HNG++S+++ L G R+FPRL IGIG PPGK
Sbjct:   174 IPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGK 233

Query:   131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
             MD   ++L++F+  E+E++D   + G+EA+R L+L GF+++ +  N
Sbjct:   234 MDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVN 279

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 66/167 (39%), Positives = 102/167 (61%)

Query:    12 GFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV 71
             GF ++D +A+   I +   + K+L+G G I  V +LL KPQ YMN SG +V    + Y++
Sbjct:    22 GFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKPQTYMNLSGTAVQEAVSFYKL 81

Query:    72 PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKM 131
             PL  ++V+YD++ L  G +RL+ KG  G H G+ S+++ L G  E PRL IGIG P    
Sbjct:    82 PLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGRP-AVG 139

Query:   132 DMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMG 178
             D+K Y+LQ F+  ERE ++  L+   EA+   +  GF++ ++ FN G
Sbjct:   140 DVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAMTDFNRG 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 59/166 (35%), Positives = 98/166 (59%)

Query:    11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
             +GF  ID +A+   I++N  + K L G G +    ++L KP  YMN SGES+ PL  +Y+
Sbjct:    21 IGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYK 80

Query:    71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
             + +   +V+YD++ +  G LRL+ KG  G HNG+KS ++HL G +EF R+ +GI  P   
Sbjct:    81 IDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNG 139

Query:   131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
             M +  Y+L +F+  E   ++ ++E+  +A    +   F Q ++ FN
Sbjct:   140 MKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFN 185

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 58/139 (41%), Positives = 86/139 (61%)

Query:    31 QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
             +S A +  G      ++LAKP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +
Sbjct:    45 RSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRI 104

Query:    91 RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
             RL+  GG G HNGL+SV+  L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++ 
Sbjct:   105 RLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVP 163

Query:   151 AALEQGVEAVRTLVLNGFD 169
                EQ  +A   L+  G +
Sbjct:   164 TICEQAADATELLIEQGME 182

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 59/169 (34%), Positives = 92/169 (54%)

Query:    11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
             VGF+ +   A+   I+ +     +  G G I +  I+LAKPQ YMN SG++   L   Y 
Sbjct:    21 VGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQTYMNLSGKAASQLLRRYN 80

Query:    71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
             +    I+V+ D++ L  G +RL+  G  G HNG+ S++  + G +EF RL IGIG P  +
Sbjct:    81 LKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI-GTKEFIRLKIGIGKPDSR 139

Query:   131 ---MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
                 ++  ++L  F   ERE +D A+ +  EA+  L+  G D   +RFN
Sbjct:   140 NNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLDTASNRFN 188

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2184 VC_2184 "peptidyl-tRNA hydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 53/166 (31%), Positives = 91/166 (54%)

Query:    12 GFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
             G  +++ +A+   + + N  +   L G   I    + +  P  +MN SG+++  LA  YQ
Sbjct:    26 GAWVVEELARIHNVTLKNEPKFFGLTGRLLINSQELRVLIPTTFMNLSGKAIAALANFYQ 85

Query:    71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
             +    I+V +DE+ L  GV + +  GGHG HNGLK  ++ L   +EF RL +GIG+P  K
Sbjct:    86 IKPEEIMVAHDELDLPPGVAKFKQGGGHGGHNGLKDTISKLGNNKEFYRLRLGIGHPGHK 145

Query:   131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
               +  Y+L K    E+E +DAA+++ V  +  L+ +G  +  +R +
Sbjct:   146 DKVAGYVLGKAPAKEQECLDAAVDESVRCLEILMKDGLTKAQNRLH 191

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 53/165 (32%), Positives = 90/165 (54%)

Query:    12 GFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV 71
             GF ++D +A A   ++       + G G+     +LL KPQ YMN SG SV      +++
Sbjct:    24 GFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQTYMNLSGRSVAEALRFHKL 83

Query:    72 PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKM 131
             PL   +VI+D++ +  G ++++  GGHG HNGL+S++  L G   F R+ +GIG P    
Sbjct:    84 PLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQELGGAG-FVRVRVGIGRPVHG- 141

Query:   132 DMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
             D+  Y+L  FS  E   +   L+  ++ + +L+  G  + +S +N
Sbjct:   142 DVVNYVLTNFSQDEMADLAHLLDGTLDLLESLLTAGLPKTMSLYN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63HI2	PTH_BACCZ	3, ., 1, ., 1, ., 2, 9	0.3473	0.8924	0.8924	yes	no
B8G3X3	PTH_CHLAD	3, ., 1, ., 1, ., 2, 9	0.3832	0.8870	0.8776	yes	no
C4Z4L5	PTH_EUBE2	3, ., 1, ., 1, ., 2, 9	0.3592	0.8924	0.8924	yes	no
A7GJD4	PTH_CLOBL	3, ., 1, ., 1, ., 2, 9	0.3892	0.8817	0.8677	yes	no
B1I197	PTH_DESAP	3, ., 1, ., 1, ., 2, 9	0.3832	0.8763	0.8358	yes	no
A8MK43	PTH_ALKOO	3, ., 1, ., 1, ., 2, 9	0.3832	0.8870	0.8918	yes	no
B9LE93	PTH_CHLSY	3, ., 1, ., 1, ., 2, 9	0.3712	0.8870	0.8776	yes	no
P37470	PTH_BACSU	3, ., 1, ., 1, ., 2, 9	0.3832	0.8924	0.8829	yes	no
C4KZU9	PTH_EXISA	3, ., 1, ., 1, ., 2, 9	0.3712	0.8924	0.8972	yes	no
Q9FKN4	CRS2A_ARATH	No assigned EC number	0.7627	0.9516	0.7195	yes	no
B1KTE2	PTH_CLOBM	3, ., 1, ., 1, ., 2, 9	0.3832	0.8817	0.8677	yes	no
Q0TMG7	PTH_CLOP1	3, ., 1, ., 1, ., 2, 9	0.3712	0.8817	0.8723	yes	no
C1FNE6	PTH_CLOBJ	3, ., 1, ., 1, ., 2, 9	0.3952	0.8817	0.8677	yes	no
B2TI10	PTH_CLOBB	3, ., 1, ., 1, ., 2, 9	0.3592	0.8817	0.8586	yes	no
B0KBG1	PTH_THEP3	3, ., 1, ., 1, ., 2, 9	0.3652	0.8817	0.8913	yes	no
Q9F8Q3	PTH_CARHZ	3, ., 1, ., 1, ., 2, 9	0.3952	0.8870	0.8823	yes	no
Q65PG8	PTH_BACLD	3, ., 1, ., 1, ., 2, 9	0.3712	0.8924	0.8829	yes	no
Q97E97	PTH_CLOAB	3, ., 1, ., 1, ., 2, 9	0.3892	0.8817	0.8770	yes	no
B9IZD4	PTH_BACCQ	3, ., 1, ., 1, ., 2, 9	0.3473	0.8924	0.8924	yes	no
A7FPJ7	PTH_CLOB1	3, ., 1, ., 1, ., 2, 9	0.3952	0.8817	0.8677	yes	no
C3KW96	PTH_CLOB6	3, ., 1, ., 1, ., 2, 9	0.3892	0.8817	0.8677	yes	no
A8F920	PTH_BACP2	3, ., 1, ., 1, ., 2, 9	0.4036	0.8870	0.8776	yes	no
B1IGZ7	PTH_CLOBK	3, ., 1, ., 1, ., 2, 9	0.3952	0.8817	0.8677	yes	no
Q8R757	PTH_THETN	3, ., 1, ., 1, ., 2, 9	0.3712	0.8870	0.8918	yes	no
A4XIS3	PTH_CALS8	3, ., 1, ., 1, ., 2, 9	0.3662	0.9086	0.8941	yes	no
A9WBS1	PTH_CHLAA	3, ., 1, ., 1, ., 2, 9	0.3712	0.8870	0.8776	yes	no
Q6HPW6	PTH_BACHK	3, ., 1, ., 1, ., 2, 9	0.3532	0.8924	0.8924	yes	no
Q181A2	PTH_CLOD6	3, ., 1, ., 1, ., 2, 9	0.3712	0.8924	0.8924	yes	no
A4IJC9	PTH_GEOTN	3, ., 1, ., 1, ., 2, 9	0.3532	0.8924	0.8924	yes	no
Q8XHJ8	PTH_CLOPE	3, ., 1, ., 1, ., 2, 9	0.3712	0.8817	0.8723	yes	no
B0K466	PTH_THEPX	3, ., 1, ., 1, ., 2, 9	0.3712	0.8817	0.8913	yes	no
A5I7R5	PTH_CLOBH	3, ., 1, ., 1, ., 2, 9	0.3952	0.8817	0.8677	yes	no
A7GJW3	PTH_BACCN	3, ., 1, ., 1, ., 2, 9	0.3592	0.8924	0.8924	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.7329	0.9462	0.6795	yes	no
Q9M5P4	CRS2_MAIZE	No assigned EC number	0.7272	0.9462	0.6875	N/A	no
B2UXS9	PTH_CLOBA	3, ., 1, ., 1, ., 2, 9	0.3592	0.8817	0.8586	yes	no
Q4L3F9	PTH_STAHJ	3, ., 1, ., 1, ., 2, 9	0.3592	0.8870	0.8684	yes	no
A9KR32	PTH_CLOPH	3, ., 1, ., 1, ., 2, 9	0.4131	0.8924	0.8691	yes	no
A0PXL3	PTH_CLONN	3, ., 1, ., 1, ., 2, 9	0.3473	0.8870	0.8776	yes	no
Q5L3U7	PTH_GEOKA	3, ., 1, ., 1, ., 2, 9	0.3712	0.8924	0.8924	yes	no
Q81VY9	PTH_BACAN	3, ., 1, ., 1, ., 2, 9	0.3532	0.8924	0.8924	yes	no
A6TJM7	PTH_ALKMQ	3, ., 1, ., 1, ., 2, 9	0.3652	0.8870	0.8918	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.914
3rd Layer	3.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-104
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	4e-64
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	4e-61
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	2e-55
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	2e-50
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	3e-40

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  296 bits (760), Expect = e-104
 Identities = 131/170 (77%), Positives = 151/170 (88%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA+A+ I MNTIQ K+L+GIGSIG+VP+LLAKPQ YMN+SGESVGPLAA+Y+
Sbjct: 22  VGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYK 81

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHILVIYD+MSL NGVLRLQPKGGHG HNGL+SV+ HLDG REFPRL IGIG+PPGK
Sbjct: 82  VPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGK 141

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 180
           MD +A+LLQKFS  EREQID ALEQGV+AVRTLVL GF+ +  RFN+ QK
Sbjct: 142 MDPRAFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGFNGSAERFNLVQK 191

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  194 bits (496), Expect = 4e-64
 Identities = 72/154 (46%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGF ++D +A+   ++    + K L+G G IG   +LL KPQ YMN SGE+V  LA  Y+
Sbjct: 19  VGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYK 78

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           +P   ILVI+D++ L  G +RL+  GG G HNGLKS++ HL G  +FPRL IGIG PP K
Sbjct: 79  IPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNK 137

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLV 164
           MD+  Y+L KFS  ERE ++ A+E+  +A+  ++
Sbjct: 138 MDVADYVLSKFSKEERELLEEAIEKAADALEDIL 171

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  187 bits (478), Expect = 4e-61
 Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 2/166 (1%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQS-KALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
           VGF +ID +A+   +++   +  K LI  G I    ++L KPQ YMN SGE+V  +A  Y
Sbjct: 19  VGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKPQTYMNLSGEAVRAIARFY 78

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++P   ILV++D++ L  G LRL+  GG G HNGLKS++ HL G  +F RL IGIG PP 
Sbjct: 79  KIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQHL-GTNDFKRLRIGIGRPPD 137

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRF 175
           K D+  Y+L KFSP E E +D A+E+  +A+  L+  GFD+ ++RF
Sbjct: 138 KNDVADYVLSKFSPEELELLDKAIEKAADALEDLIEGGFDKAMNRF 183

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  173 bits (441), Expect = 2e-55
 Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 11  VGFEMIDHIAQA-QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
           +GF ++D +A+          + K LI  G I    ++L KPQ YMN SG++V  LA  Y
Sbjct: 22  IGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANFY 81

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++P   ILVI+D++ L  G +RL+  GG G HNGLKS++ HL G ++F RL IGIG  P 
Sbjct: 82  KIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGR-PD 139

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
           K  +  Y+L KFS  E+E +D A+++  +A+  L+  GF++ +++FN
Sbjct: 140 KKKVVDYVLGKFSKEEQELLDKAIDKAADAIELLLEGGFEKAMNKFN 186

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  160 bits (407), Expect = 2e-50
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 4/168 (2%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSK--ALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH 68
           VGF ++D +A+   ++    + K   L+  G+I    ++L KP  YMN SG++VG LA+ 
Sbjct: 22  VGFMVVDLLARRLNLS-FKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF 80

Query: 69  YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPP 128
           Y++    ILV++DE+ L  G +RL+  GG G HNGLKS++ HL G   F RL IGIG P 
Sbjct: 81  YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPG 139

Query: 129 GKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
              D+  Y+L KFS  ERE +D A+++  +A+  L+   F++ +++ N
Sbjct: 140 NGEDVADYVLGKFSKEERELLDKAIDKAADALELLLEGDFEKAMNKLN 187

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  134 bits (339), Expect = 3e-40
 Identities = 61/168 (36%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            GF ++D +A    +++ T +        G +    ++L KP  YMN SGE+V  LA+ Y
Sbjct: 21  AGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY 80

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++    +LV++DE+ L  G +RL+  GG G HNGLKS+++HL G   F RL IGIG+P G
Sbjct: 81  RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGG 139

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAV-RTLVLNGFDQNISRFN 176
              +  ++L KF+  E   ++ AL++ VEA+  +     F + ++RFN
Sbjct: 140 SNKVVEFVLSKFTKSELPLLEKALDKAVEALEMSFSEGAFLKAMNRFN 187

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-69  Score=443.47  Aligned_cols=174  Identities=37%  Similarity=0.641  Sum_probs=168.0

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCc-cccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~-~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      |..|||||||+++|.||++++.++ +.+++.++++++.+.+++++|+||+||||+||++|.++++||+++|++|||||||
T Consensus        15 Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~fy~i~~~~ilVvhDd   94 (190)
T COG0193          15 YAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASFYKIKPEDILVVHDE   94 (190)
T ss_pred             hcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHHhCCCHHHEEEEeec
Confidence            568999999999999999999998 4468999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT  162 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~  162 (186)
                      ||||+|++|||.+||+|||||||||+++| ||++|+|||||||||..+++|++|||++|+++|++.|+++++.++++++.
T Consensus        95 Ldl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~l~~~~~~a~~~~~~  173 (190)
T COG0193          95 LDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALEL  173 (190)
T ss_pred             cCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 59999999999999998889999999999999999999999999999999


Q ss_pred             HHHhCHHHHHHhhhcc
Q 029850          163 LVLNGFDQNISRFNMG  178 (186)
Q Consensus       163 ~~~~~~~~~m~~~n~~  178 (186)
                      ++..+++++||+||+.
T Consensus       174 ~~~~~~~~~mn~~~~~  189 (190)
T COG0193         174 LLEGDFEKAMNKLNAL  189 (190)
T ss_pred             HHHHhHHHHHHHHhcc
Confidence            9999999999999975

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=2.4e-69  Score=444.54  Aligned_cols=177  Identities=74%  Similarity=1.157  Sum_probs=168.1

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM   83 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl   83 (186)
                      |.+|||||||+++|.||+++++++.+.++++.+++..+.+++++|+||+||||+||++|+++++||+++++++|||||||
T Consensus        15 Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~yki~~~~ilVihDdl   94 (191)
T cd02406          15 YKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDM   94 (191)
T ss_pred             hCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHhCCCHHHEEEEEECC
Confidence            45999999999999999999998766678899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q 029850           84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL  163 (186)
Q Consensus        84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~  163 (186)
                      |||+|++|+|++||++||||||||+++|++|++|+|||||||||+.+.++++|||++|+++|++.|+++++.|+++++.|
T Consensus        95 dl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~~~~~  174 (191)
T cd02406          95 SLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTL  174 (191)
T ss_pred             CCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999995578999999999999877789999999999999999999999999999999


Q ss_pred             HHhCHHHHHHhhhccCC
Q 029850          164 VLNGFDQNISRFNMGQK  180 (186)
Q Consensus       164 ~~~~~~~~m~~~n~~~~  180 (186)
                      +..+++++||+||+..+
T Consensus       175 ~~~~~~~~~n~~n~~~~  191 (191)
T cd02406         175 VLKGFNGSAERFNLVQK  191 (191)
T ss_pred             HHCCHHHHHHHHhCCCC
Confidence            99999999999997643

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=3.3e-67  Score=431.19  Aligned_cols=173  Identities=36%  Similarity=0.583  Sum_probs=164.5

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      |.+|||||||+++|.||++++.++.+ .++.+.+++..+.+++++|+||+||||+||++|++++++|+++++++||||||
T Consensus        14 Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDd   93 (188)
T TIGR00447        14 YAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFYRIKPAELLVVHDE   93 (188)
T ss_pred             hCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHhCCChHHEEEEEec
Confidence            44999999999999999999998763 46778888888999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT  162 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~  162 (186)
                      ||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.++++++.++++++.
T Consensus        94 ldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l~~~i~~~~~~~~~  172 (188)
T TIGR00447        94 LDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEM  172 (188)
T ss_pred             CCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 58999999999999987779999999999999999999999999999999


Q ss_pred             HHHhC-HHHHHHhhhc
Q 029850          163 LVLNG-FDQNISRFNM  177 (186)
Q Consensus       163 ~~~~~-~~~~m~~~n~  177 (186)
                      |+.++ ++++||+||+
T Consensus       173 ~~~~~~~~~~~n~~n~  188 (188)
T TIGR00447       173 SFSEGAFLKAMNRFNS  188 (188)
T ss_pred             HHHCCCHHHHHHHhhC
Confidence            99999 9999999995

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=9e-66  Score=423.01  Aligned_cols=173  Identities=39%  Similarity=0.678  Sum_probs=163.8

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      +.+|||||||+++|.||++++..+. .+++.+.+++..+++++++|+||+||||+||++|++++++|++++++++|||||
T Consensus        15 Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDd   94 (189)
T PRK05426         15 YANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANFYKIPPEDILVIHDD   94 (189)
T ss_pred             hCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHhCCCHHHEEEEEec
Confidence            4599999999999999999987665 346779999999998999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT  162 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~  162 (186)
                      ||+|+|++|+|.+||++||||||||+++| +|++|+|||||||||+ +.++++|||++|+++|++.++++++.|+++++.
T Consensus        95 ldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~v~~  172 (189)
T PRK05426         95 LDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQELLDKAIDKAADAIEL  172 (189)
T ss_pred             CCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 5889999999999997 567999999999999999999999999999999


Q ss_pred             HHHhCHHHHHHhhhcc
Q 029850          163 LVLNGFDQNISRFNMG  178 (186)
Q Consensus       163 ~~~~~~~~~m~~~n~~  178 (186)
                      |+..+++++||+||+.
T Consensus       173 ~~~~~~~~~~~~~n~~  188 (189)
T PRK05426        173 LLEGGFEKAMNKFNSK  188 (189)
T ss_pred             HHHCCHHHHHHHHhCC
Confidence            9999999999999974

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=8.1e-66  Score=421.48  Aligned_cols=172  Identities=42%  Similarity=0.736  Sum_probs=155.2

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      +.+|||||||+++|.||++++.+|... ++.+.++.+.+.+++++|+||+||||+||++|++++++|+++++++||||||
T Consensus        12 Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDd   91 (184)
T PF01195_consen   12 YENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKIPPENILVIHDD   91 (184)
T ss_dssp             TTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT--GGGEEEEEEE
T ss_pred             hcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCCCcceEEEEEec
Confidence            579999999999999999999988665 4789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT  162 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~  162 (186)
                      +|+|+|++|+|++||++||||||||+++| +|++|+|||||||||+++.++++|||++|+++|++.|+++++.|+++++.
T Consensus        92 ldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~l~~  170 (184)
T PF01195_consen   92 LDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDKVIPQAAEALEQ  170 (184)
T ss_dssp             TTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 58999999999999998889999999999999999999999999999999


Q ss_pred             HHHhCHHHHHHhhh
Q 029850          163 LVLNGFDQNISRFN  176 (186)
Q Consensus       163 ~~~~~~~~~m~~~n  176 (186)
                      |++++++++||+||
T Consensus       171 ~i~~~~~~~mn~~n  184 (184)
T PF01195_consen  171 IIEGGFEKAMNKFN  184 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHhC
Confidence            99999999999998

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=6.6e-65  Score=412.10  Aligned_cols=160  Identities=45%  Similarity=0.786  Sum_probs=152.7

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM   83 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl   83 (186)
                      |.+|||||||+++|+||++++.+|.+.++.+.+++..+.+++++|+||+||||+||++|++++++|+++++++|||||||
T Consensus        12 Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDdl   91 (171)
T cd00462          12 YENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIPPEDILVIHDDL   91 (171)
T ss_pred             cCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCChhHEEEEEecC
Confidence            45999999999999999999998877677899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q 029850           84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL  163 (186)
Q Consensus        84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~  163 (186)
                      |||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++++.++++++.+
T Consensus        92 dl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~~~~~~~~~~~~  170 (171)
T cd00462          92 DLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDI  170 (171)
T ss_pred             CCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999 589999999999999887899999999999999999999999999999876


Q ss_pred             H
Q 029850          164 V  164 (186)
Q Consensus       164 ~  164 (186)
                      +
T Consensus       171 ~  171 (171)
T cd00462         171 L  171 (171)
T ss_pred             C
Confidence            3

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-49  Score=324.97  Aligned_cols=170  Identities=57%  Similarity=0.949  Sum_probs=151.7

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM   83 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl   83 (186)
                      +++|||||||.++|.||+++|++..+.+.++..+.+.+++..++|++|++|||.||++|.+++..|+++.++++||||||
T Consensus        52 y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~i~~~~ivvIhDEl  131 (224)
T KOG2255|consen   52 YVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYKIPLRHIVVIHDEL  131 (224)
T ss_pred             ccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhcchheeEEEEeccc
Confidence            58999999999999999999987655555667777788889999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHH-HHHHHHHHHHHHHHH
Q 029850           84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE-QIDAALEQGVEAVRT  162 (186)
Q Consensus        84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~-~l~~~~~~a~~~~~~  162 (186)
                      ++|+|++|+|++||++||||+||++.++++...|+||+||||||+.++++.+|||++|++.|++ .|+..+    +.++.
T Consensus       132 ~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~ke~Let~l----~~~~~  207 (224)
T KOG2255|consen  132 ELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQKELLETLL----EHVKT  207 (224)
T ss_pred             cCcCceEEeccCCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhHHHHHHHH----hhhHH
Confidence            9999999999999999999999999999877799999999999999999999999999999998 555444    44555


Q ss_pred             HHHhCHHHHHHhhhc
Q 029850          163 LVLNGFDQNISRFNM  177 (186)
Q Consensus       163 ~~~~~~~~~m~~~n~  177 (186)
                      ++.++++.-.++||.
T Consensus       208 lil~~l~~~is~~~l  222 (224)
T KOG2255|consen  208 LILQGLQQSISRFNL  222 (224)
T ss_pred             HHHHHHHHhcccCcC
Confidence            566677777777774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		9e-73
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		4e-70
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		2e-68
2lgj_A	191	Solution Structure Of Mspth Length = 191		5e-22
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		2e-21
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		2e-21
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		7e-21
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		2e-13
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		5e-13
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		1e-10
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		1e-10
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		1e-10
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		9e-10
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		4e-09
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		4e-09

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  268 bits (686), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 150/176 (85%)
Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA  + I MNT QSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 37  VGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 96
Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 97  VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 156
Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
           MD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ QKYK+H V
Sbjct: 157 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 212

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  259 bits (663), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/169 (72%), Positives = 145/169 (85%)
Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 37  VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 96
Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 97  VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 156
Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 179
           MD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ Q
Sbjct: 157 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/170 (71%), Positives = 143/170 (84%)
Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA  + I MNT Q K+L+G GSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 25  VGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 84
Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 85  VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 144
Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 180
           MD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ QK
Sbjct: 145 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQK 194

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Query: 31  QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
           +S A +  G +    ++LAKP+ YMN SG  VGPLA  Y VP + I+VI+DE+ +  G +
Sbjct: 45  KSGAEVVTGRLAGTSVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRI 104
Query: 91  RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
           RL+  GG G HNGL+SV + L G + F R+ IG+G PPG+ D  A++L+ F+  ER ++ 
Sbjct: 105 RLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVP 163
Query: 151 AALEQGVEAVRTLVLNGFD 169
             +EQ  +A   L+  G +
Sbjct: 164 TIVEQAADATELLIAQGLE 182

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 31  QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
           +S A +  G      ++LAKP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +
Sbjct: 45  RSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRI 104
Query: 91  RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
           RL+  GG G HNGL+SV+  L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++ 
Sbjct: 105 RLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVP 163
Query: 151 AALEQGVEAVRTLVLNGFDQNISR 174
              EQ  +A   L+  G +   +R
Sbjct: 164 TICEQAADATELLIEQGMEPAQNR 187

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 31  QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
           +S A +  G      ++LAKP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +
Sbjct: 45  RSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRI 104
Query: 91  RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
           RL+  GG G HNGL+SV+  L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++ 
Sbjct: 105 RLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVP 163
Query: 151 AALEQGVEAVRTLVLNGFDQNISR 174
              EQ  +A   L+  G +   +R
Sbjct: 164 TICEQAADATELLIEQGMEPAQNR 187

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
Query: 31  QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
           +S A +  G +    ++LAKP+  MN SG  VGPLA  Y VP + I+VI+DE+ +  G +
Sbjct: 45  KSGAEVVTGRLAGTTVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRI 104
Query: 91  RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
           RL+  GG G HNGL+SV + L G + F R+ IG+G PPG+ D  A++L+ F+  ER ++ 
Sbjct: 105 RLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVP 163
Query: 151 AALEQGVEAVRTLVLNGFD 169
             +EQ  +A   L+  G +
Sbjct: 164 TIVEQAADATELLIAQGLE 182

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Query: 12  GFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           GF  ++ +A    I + N  +   + G G+I    + L  P  YMN SG+SV P +  YQ
Sbjct: 25  GFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQ 84
Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           +    IL+ +DE+ +  GV+RL+  GGHG HNGL+ ++ H+     F RL IGIG+P  K
Sbjct: 85  IAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI--GPNFHRLRIGIGHPGSK 142
Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
             +  ++L K    E+  +D A++  +  V+ LV     Q +++ N
Sbjct: 143 ERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQIN 188

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 40  SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99
           SI    ++L  P  YMN SG +V  +A  Y++    ILV++DE+ + +G +RL+  GGHG
Sbjct: 73  SIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHG 132
Query: 100 HHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGV 157
            HNGL+S+  HL G  ++ RL IGIG+P  K  +  Y+L   S  +++ ID+A++ G+
Sbjct: 133 GHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 189

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 40  SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99
           ++G   + L  P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG
Sbjct: 56  TLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHG 115
Query: 100 HHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEA 159
            HNGLK +++ L     F RL IGIG+P  K  +  ++L K    E++ ID A+++    
Sbjct: 116 GHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARC 175
Query: 160 VRTLVLNGFDQNISRF 175
                 +G  +  +R 
Sbjct: 176 TEMWFTDGLTKATNRL 191

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 40  SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99
           ++G   + L  P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG
Sbjct: 52  TLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHG 111
Query: 100 HHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEA 159
            HNGLK +++ L     F RL IGIG+P  K  +  ++L K    E++ ID A+++    
Sbjct: 112 GHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARC 171
Query: 160 VRTLVLNGFDQNISRF 175
                 +G  +  +R 
Sbjct: 172 TEMWFTDGLTKATNRL 187

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 40  SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99
           ++G   + L  P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG
Sbjct: 73  TLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHG 132
Query: 100 HHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEA 159
            HNGLK +++ L     F RL IGIG+P  K  +  ++L K    E++ ID A+++    
Sbjct: 133 GHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARC 192
Query: 160 VRTLVLNGFDQNISRF 175
                 +G  +  +R 
Sbjct: 193 TEMWFTDGLTKATNRL 208

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 19/177 (10%)
Query: 5   TIISCQVGFEMIDHIAQAQRIAMNTIQSK----ALIGIGSIGEVPILLAKPQAYMNFSGE 60
           T      GF ++D +A   R A  T++ +           +    + L +PQ YMN SG+
Sbjct: 37  TATRHNAGFWLVDQLA---REAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQ 93
Query: 61  SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 120
           SV  LA  +++    ILV +DE+ L  G ++L+  GG G HNGLK +  HL   +++ RL
Sbjct: 94  SVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHLS-SQQYWRL 152
Query: 121 CIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 167
            IGIG+P            K D+  ++L+     E++ IDAA+E+ + AV   V+ G
Sbjct: 153 RIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERAL-AVMPAVVKG 208

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 11  VGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            G   ++ +A AQ +++   +    L+G  S     + L  P  YMN SG+SV  LA  +
Sbjct: 30  AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 89
Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++  L     F RL +GIG+P  
Sbjct: 90  RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGH 149
Query: 130 KMDMKAYLLQKFSPIEREQIDAALE 154
              +  Y+L +    E+E +D +++
Sbjct: 150 SSLVSGYVLGRAPRSEQELLDTSID 174

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 11  VGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            G   ++ +A AQ +++   +    L+G  S     + L  P  YMN SG+SV  LA  +
Sbjct: 24  AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 83
Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++  L     F RL +GIG+P  
Sbjct: 84  RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGH 143
Query: 130 KMDMKAYLLQKFSPIEREQIDAALE 154
              +  Y+L +    E+E +D +++
Sbjct: 144 SSLVSGYVLGRAPRSEQELLDTSID 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	2e-79
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	1e-69
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	6e-67
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	6e-65
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	5e-59
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	5e-58
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	1e-57

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  234 bits (598), Expect = 2e-79
 Identities = 123/169 (72%), Positives = 145/169 (85%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 37  VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 96

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 97  VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 156

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 179
           MD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ Q
Sbjct: 157 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  208 bits (533), Expect = 1e-69
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 2/167 (1%)

Query: 11  VGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
           +GF + D +A           +S A +  G      ++LAKP+ YMN SG  +GPLA  Y
Sbjct: 24  LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY 83

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
            V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+  L G ++F R+ IGIG PPG
Sbjct: 84  SVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPG 142

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
           + D  A++L+ F+P ER ++    EQ  +A   L+  G +   +R +
Sbjct: 143 RKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  202 bits (516), Expect = 6e-67
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 1/167 (0%)

Query: 11  VGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            G   ++ +A AQ +++    +   L+G  S     + L  P  YMN SG+SV  LA  +
Sbjct: 24  AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 83

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++  L     F RL +GIG+P  
Sbjct: 84  RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGH 143

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
              +  Y+L +    E+E +D +++  +  +  ++   + + + + +
Sbjct: 144 SSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLH 190

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  196 bits (502), Expect = 6e-65
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 11  VGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            G   +D +A+  R  +    +        ++G   + L  P  +MN SG++V  +A+ +
Sbjct: 22  AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++    ILV +DE+ L  GV + +  GGHG HNGLK +++ L     F RL IGIG+P  
Sbjct: 82  RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGD 141

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
           K  +  ++L K    E++ ID A+++          +G  +  +R +
Sbjct: 142 KNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLH 188

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  182 bits (464), Expect = 5e-59
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 2/166 (1%)

Query: 11  VGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
           VG   I  IAQ    + ++  +    +   SI    ++L  P  YMN SG +V  +A  Y
Sbjct: 43  VGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFY 102

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++    ILV++DE+ + +G +RL+  GGHG HNGL+S+  HL G  ++ RL IGIG+P  
Sbjct: 103 KIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGH 161

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRF 175
           K  +  Y+L   S  +++ ID+A++ G+  +  ++    +  + + 
Sbjct: 162 KSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLEPVMQKL 207

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  179 bits (456), Expect = 5e-58
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 11  VGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            GF  ++ +A    I +    +   + G G+I    + L  P  YMN SG+SV P +  Y
Sbjct: 24  AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFY 83

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           Q+    IL+ +DE+ +  GV+RL+  GGHG HNGL+ ++ H+     F RL IGIG+P  
Sbjct: 84  QIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIG--PNFHRLRIGIGHPGS 141

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
           K  +  ++L K    E+  +D A++  +  V+ LV     Q +++ N
Sbjct: 142 KERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQIN 188

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  179 bits (457), Expect = 1e-57
 Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 12/177 (6%)

Query: 11  VGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            GF ++D +A+     +    +         +    + L +PQ YMN SG+SV  LA  +
Sbjct: 43  AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHFF 102

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPP- 128
           ++    ILV +DE+ L  G ++L+  GG G HNGLK +  HL   +++ RL IGIG+P  
Sbjct: 103 KILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRD 161

Query: 129 ---------GKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
                     K D+  ++L+     E++ IDAA+E+ +  +  +V    ++ + + +
Sbjct: 162 MIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLH 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.4e-70  Score=452.92  Aligned_cols=174  Identities=28%  Similarity=0.481  Sum_probs=166.9

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      |.+|||||||+++|+||++++.+|.+ +++.++++++.+++++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus        23 Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~~~ilVihDd  102 (199)
T 4fyj_A           23 YDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDE  102 (199)
T ss_dssp             GTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred             hCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhCCCHHHEEEEEec
Confidence            34999999999999999999999865 47889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCC-CcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVR  161 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~-~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~  161 (186)
                      ||||+|++|+|.+||+|||||||||+++| +|+ +|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++
T Consensus       103 ldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~  181 (199)
T 4fyj_A          103 LDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLP  181 (199)
T ss_dssp             TTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHHHHHHHHHHHTHH
T ss_pred             CCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 577 9999999999998888999999999999999999999999999999


Q ss_pred             HHHHhCHHHHHHhhhcc
Q 029850          162 TLVLNGFDQNISRFNMG  178 (186)
Q Consensus       162 ~~~~~~~~~~m~~~n~~  178 (186)
                      .|++.+++++||+||+.
T Consensus       182 ~~~~~~~~~amn~~n~~  198 (199)
T 4fyj_A          182 EMLAGDWTRAMQKLHSQ  198 (199)
T ss_dssp             HHHHTCHHHHHHHHTTC
T ss_pred             HHHHCCHHHHHHHHhCC
Confidence            99999999999999985

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=1.5e-70  Score=451.26  Aligned_cols=176  Identities=27%  Similarity=0.459  Sum_probs=167.0

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      |.+|||||||+++|+||++++++|. ++++++.++++.+.+++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus        15 Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~yki~~~~ilVihDd   94 (193)
T 2pth_A           15 YAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDE   94 (193)
T ss_dssp             TTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred             cccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHhCCCHHHEEEEecc
Confidence            5699999999999999999999987 457889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT  162 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~  162 (186)
                      ||||+|++|+|.+||+|||||||||+++||+|++|+|||||||||..+.++++|||++|+++|++.|+++++.|++|++.
T Consensus        95 ldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~  174 (193)
T 2pth_A           95 LDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEM  174 (193)
T ss_dssp             TTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999427899999999999965557999999999999999999999999999999


Q ss_pred             HHHhCHHHHHHhhhccC
Q 029850          163 LVLNGFDQNISRFNMGQ  179 (186)
Q Consensus       163 ~~~~~~~~~m~~~n~~~  179 (186)
                      |++.+++++||+||+++
T Consensus       175 ~~~~~~~~amn~~n~~~  191 (193)
T 2pth_A          175 WFTDGLTKATNRLHAFK  191 (193)
T ss_dssp             HHHHCHHHHHHHHHHTT
T ss_pred             HHHCCHHHHHHHHhCcc
Confidence            99999999999999864

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=2.8e-70  Score=448.93  Aligned_cols=172  Identities=37%  Similarity=0.642  Sum_probs=154.4

Q ss_pred             CCCchhHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850            5 TIISCQVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM   83 (186)
Q Consensus         5 ~~TRHNvGf~~ld~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl   83 (186)
                      .+|||||||+++|+||+++++++.+ +++++.++++.+.+++++|+||+||||+||++|+++++||+|++++||||||||
T Consensus        18 ~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~yki~~~~ilVihDdl   97 (191)
T 2z2i_A           18 ARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDL   97 (191)
T ss_dssp             HTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHTTCCGGGEEEEEEET
T ss_pred             ccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHhCCCHHHEEEEeccc
Confidence            4899999999999999999999865 468899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q 029850           84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL  163 (186)
Q Consensus        84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~  163 (186)
                      |||+|++|+|.+||+|||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|
T Consensus        98 dlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~  176 (191)
T 2z2i_A           98 DLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELL  176 (191)
T ss_dssp             TSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 589999999999999756679999999999999999999999999999999


Q ss_pred             HHhCHHHHHHhhhc
Q 029850          164 VLNGFDQNISRFNM  177 (186)
Q Consensus       164 ~~~~~~~~m~~~n~  177 (186)
                      ++.+++++||+||+
T Consensus       177 ~~~~~~~amn~~n~  190 (191)
T 2z2i_A          177 IEQGMEPAQNRVHA  190 (191)
T ss_dssp             HHC-----------
T ss_pred             HHCCHHHHHHHHhC
Confidence            99999999999995

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=6.4e-70  Score=447.54  Aligned_cols=175  Identities=32%  Similarity=0.536  Sum_probs=167.8

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      |.+|||||||+++|.||+++++++.. +++.+.++++.+.+++++|+||+||||+||++|++++++|++++++|||||||
T Consensus        17 Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~ki~~~~ilVihDd   96 (193)
T 4hoy_A           17 YAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDE   96 (193)
T ss_dssp             TTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred             hCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHcCCCchheEEeeec
Confidence            56899999999999999999999865 47889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT  162 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~  162 (186)
                      ||||+|++|+|++||+|||||||||+++| +| ||+|||||||||+++.++++|||++|+++|++.|+++++.|+++++.
T Consensus        97 ldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~i~~  174 (193)
T 4hoy_A           97 LDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKL  174 (193)
T ss_dssp             TTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHHHHHHHHHHHTHHH
T ss_pred             cccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 45 79999999999998889999999999999999999999999999999


Q ss_pred             HHHhCHHHHHHhhhccCC
Q 029850          163 LVLNGFDQNISRFNMGQK  180 (186)
Q Consensus       163 ~~~~~~~~~m~~~n~~~~  180 (186)
                      |+++++++|||+||++++
T Consensus       175 ~~~~~~~~amn~~n~~kp  192 (193)
T 4hoy_A          175 LVQGQVPQAMNQINAYKP  192 (193)
T ss_dssp             HHTTCHHHHHHHHHTCCC
T ss_pred             HHHCCHHHHHHHHhCCCC
Confidence            999999999999999754

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=6.3e-70  Score=450.71  Aligned_cols=174  Identities=69%  Similarity=1.087  Sum_probs=162.4

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM   83 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl   83 (186)
                      |.+|||||||+++|+||+++++++.+.++++.++++.+.+++++|+||+||||+||++|+++++||+|++++||||||||
T Consensus        30 Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~~yki~~~~ilVihDdL  109 (205)
T 1ryb_A           30 YYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDT  109 (205)
T ss_dssp             GTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEET
T ss_pred             hccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHHHhCCCHHHEEEEeecc
Confidence            56899999999999999999999887788999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcHHHHHHhh-cCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850           84 SLMNGVLRLQPKGGHGHHNGLKSVMNHL-DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT  162 (186)
Q Consensus        84 dl~~G~irlk~~Gs~~GHNGLkSI~~~l-g~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~  162 (186)
                      |||+|++|+|.+||+|||||||||+++| | |++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.
T Consensus       110 dLp~G~iRlk~gGs~gGHNGLkSI~~~L~g-t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~  188 (205)
T 1ryb_A          110 SLPNGVLRLQKKGGHGRHNGLQNVIEHLDG-RREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRT  188 (205)
T ss_dssp             TSCTTCEEEESSCCCTTCHHHHHHHHHTTT-CCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEeeCCCCCCCCCHHHHHHHhcC-CCCeEEEEEecCCCCCCCchhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 6 7999999999999976668999999999999999999999999999999


Q ss_pred             HHHhCHHHHHHhhhcc
Q 029850          163 LVLNGFDQNISRFNMG  178 (186)
Q Consensus       163 ~~~~~~~~~m~~~n~~  178 (186)
                      |++.+++++||+||++
T Consensus       189 ~~~~~~~~amn~~n~~  204 (205)
T 1ryb_A          189 LVLKGFSGSTERFNLV  204 (205)
T ss_dssp             HHHHC-----CCCCCC
T ss_pred             HHHCCHHHHHHHHhcC
Confidence            9999999999999974

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=6.2e-69  Score=449.23  Aligned_cols=174  Identities=30%  Similarity=0.480  Sum_probs=161.6

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      |.+|||||||+++|+||++++++|.+. ++.+.++++.+.+++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus        36 Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDd  115 (222)
T 3v2i_A           36 YTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDE  115 (222)
T ss_dssp             GTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred             hCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHHhCCCHHHEEEEEec
Confidence            359999999999999999999998764 6889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCC----------CCCCcchhhcccCCCHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYLLQKFSPIEREQIDAA  152 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP----------~~~~~v~~yVL~~fs~~E~~~l~~~  152 (186)
                      ||||+|++|+|.+||++||||||||+++| +|++|+|||||||||          +.+.++++|||++|+++|++.|+++
T Consensus       116 LDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL~~fs~~E~~~l~~~  194 (222)
T 3v2i_A          116 LDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAA  194 (222)
T ss_dssp             TTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHTTSCCCHHHHHHHHHH
T ss_pred             CCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhccCCCHHHHHHHHHH
Confidence            99999999999999999999999999999 589999999999999          5567899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCHHHHHHhhhcc
Q 029850          153 LEQGVEAVRTLVLNGFDQNISRFNMG  178 (186)
Q Consensus       153 ~~~a~~~~~~~~~~~~~~~m~~~n~~  178 (186)
                      ++.|+++++.|++.+++++||+||+.
T Consensus       195 i~~a~~av~~~~~~~~~~amn~~n~~  220 (222)
T 3v2i_A          195 IERALAVMPAVVKGETERAMMQLHRN  220 (222)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            99999999999999999999999975

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=3.8e-69  Score=446.42  Aligned_cols=171  Identities=31%  Similarity=0.501  Sum_probs=164.7

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      |.+|||||||+++|+||++++++|.+. +++++++++.+++++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus        36 Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDd  115 (207)
T 3nea_A           36 YQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDE  115 (207)
T ss_dssp             TTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred             hCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHhCCCHHHEEEEEEc
Confidence            459999999999999999999998765 7889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT  162 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~  162 (186)
                      ||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.
T Consensus       116 LDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~i~~a~~a~~~  194 (207)
T 3nea_A          116 LDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDD  194 (207)
T ss_dssp             TTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 58999999999999988889999999999999999999999999999999


Q ss_pred             HHHhCHHHHHHhh
Q 029850          163 LVLNGFDQNISRF  175 (186)
Q Consensus       163 ~~~~~~~~~m~~~  175 (186)
                      |++.++++|||++
T Consensus       195 ~~~~~~~~amn~~  207 (207)
T 3nea_A          195 IINYKLEPVMQKL  207 (207)
T ss_dssp             HHTTCCCSCSTTC
T ss_pred             HHHCCHHHHHhcC
Confidence            9999999999974

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.5e-70  Score=451.38  Aligned_cols=175  Identities=27%  Similarity=0.477  Sum_probs=165.6

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE   82 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd   82 (186)
                      |.+|||||||+++|+||+++++++. ++++++.++++.+.+++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus        17 Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fyki~~~~ilVihDd   96 (194)
T 4fno_A           17 YDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDE   96 (194)
Confidence            5699999999999999999999876 357889999988999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEccCCCCCCCCcHHHHHHhhcCC-CCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHH
Q 029850           83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVR  161 (186)
Q Consensus        83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t-~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~  161 (186)
                      ||||+|++|+|.+||+|||||||||+++| +| ++|+|||||||||..+.++++|||++|+++|++.|+++++.|++|++
T Consensus        97 ldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~  175 (194)
T 4fno_A           97 LDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLP  175 (194)
Confidence            99999999999999999999999999999 58 79999999999996556799999999999999999999999999999


Q ss_pred             HHHHhCHHHHHHhhhccC
Q 029850          162 TLVLNGFDQNISRFNMGQ  179 (186)
Q Consensus       162 ~~~~~~~~~~m~~~n~~~  179 (186)
                      .|++.+++++||+||+.+
T Consensus       176 ~~~~~~~~~amn~~n~~k  193 (194)
T 4fno_A          176 EMLAGDWTRAMQKLHSQK  193 (194)
Confidence            999999999999999743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	7e-42
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	8e-37

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  137 bits (345), Expect = 7e-42
 Identities = 123/169 (72%), Positives = 145/169 (85%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 23  VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 82

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 83  VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 142

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 179
           MD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ Q
Sbjct: 143 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 191

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 8e-37
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 11  VGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            G   +D +A+  R  +    +        ++G   + L  P  +MN SG++V  +A+ +
Sbjct: 22  AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++    ILV +DE+ L  GV + +  GGHG HNGLK +++ L     F RL IGIG+P  
Sbjct: 82  RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGD 141

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
           K  +  ++L K    E++ ID A+++          +G  +  +R +
Sbjct: 142 KNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLH 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.8e-67  Score=430.65  Aligned_cols=175  Identities=70%  Similarity=1.103  Sum_probs=163.5

Q ss_pred             CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850            4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM   83 (186)
Q Consensus         4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl   83 (186)
                      +.+|||||||+++|.||++++++++..++.+.++...+++++++|+||+||||+||++|++++++|++++++||||||||
T Consensus        16 Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~~~i~~~~ilVihDDl   95 (191)
T d1ryba_          16 YYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDT   95 (191)
T ss_dssp             GTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEET
T ss_pred             ccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHhhccCcceeEEEEccc
Confidence            56899999999999999999999877788899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q 029850           84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL  163 (186)
Q Consensus        84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~  163 (186)
                      |||+|++|+|.+||+|||||||||+++|++|++|+|||||||||+.+.++++|||++|+++|++.++++++.++++++.+
T Consensus        96 dl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~l~~~~~~~~~~~~~~  175 (191)
T d1ryba_          96 SLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTL  175 (191)
T ss_dssp             TSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996678999999999999888899999999999999999999999999999999


Q ss_pred             HHhCHHHHHHhhhcc
Q 029850          164 VLNGFDQNISRFNMG  178 (186)
Q Consensus       164 ~~~~~~~~m~~~n~~  178 (186)
                      +.++++++||+||..
T Consensus       176 i~~~~~~~mn~~N~~  190 (191)
T d1ryba_         176 VLKGFSGSTERFNLV  190 (191)
T ss_dssp             HHHC-----CCCCCC
T ss_pred             HHcCHHHHHHHhhCC
Confidence            999999999999974

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.3e-67  Score=427.96  Aligned_cols=178  Identities=27%  Similarity=0.444  Sum_probs=168.5

Q ss_pred             CCCCCchhHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEee
Q 029850            3 LGTIISCQVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYD   81 (186)
Q Consensus         3 ~~~~TRHNvGf~~ld~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhD   81 (186)
                      -|.+|||||||+++|.||++++.+|... ++.+.++...+.+++++|+||+||||+||++|++++++|++++++|+||||
T Consensus        14 ~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~~i~~~~ilVihD   93 (193)
T d2ptha_          14 EYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHD   93 (193)
T ss_dssp             TTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred             hhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHHhCCCHHHeEEEec
Confidence            3678999999999999999999997654 677899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHH
Q 029850           82 EMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVR  161 (186)
Q Consensus        82 dldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~  161 (186)
                      |+|||+|++|+|++||+|||||||||+++||.+++|+|||||||||+.+.++++|||++|+++|++.|+++++.++++++
T Consensus        94 Dldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~l~~~i~~~~~~i~  173 (193)
T d2ptha_          94 ELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTE  173 (193)
T ss_dssp             ETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999964458999999999998878999999999999999999999999999999


Q ss_pred             HHHHhCHHHHHHhhhccCC
Q 029850          162 TLVLNGFDQNISRFNMGQK  180 (186)
Q Consensus       162 ~~~~~~~~~~m~~~n~~~~  180 (186)
                      .|++++++++||+||+.++
T Consensus       174 ~~i~~g~~~amn~~N~~k~  192 (193)
T d2ptha_         174 MWFTDGLTKATNRLHAFKA  192 (193)
T ss_dssp             HHHHHCHHHHHHHHHHTTT
T ss_pred             HHHHCCHHHHHHHHhCcCC
Confidence            9999999999999999765