Citrus Sinensis ID: 029868

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MLFLLLKHQLVATGLSGGFVLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEcccEEEEccccccccccccEEEEEcccccccEEEEEEEccEEEEEccccHHHHHHHHHHHccEEEEEEEcccccEEEEEEEEcccEEEcccccHHHHHHHHHHHcccccEEEEcccccccEEEEEEEccEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEEEEEEEcccccEccccEEEEEEccccccHHHHEEEcccEEEEcccccHHHHHHHHHHHccEEEEccEccEccHHHcEEEccccEEEcccccHHHHHHHHHHHcccEEEccEcccEccHHHHEEEccccEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLFLLLKHQLVATGLSGGFVLVTKmgfschtqpqTKRIEERLSALgnciacndhvalahtdldrETEEIIADVLGVEVFRQTIAGNILVGSYcsfsnrgglvhphtsiedlDELSTllqvplvagtvnrgsevigagltvndwtafcgsdttaTELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Flexible Loop (DISEMBL)
MLFLLLKHQLVATGLSGGFVLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKlreaqpnaivdemrkslidsyv
Low Complexity Region (SEG)
MLFLLLKHQLVATGLSGGFVLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Disordered region (IsUnstruct)
*LFLLLKHQLVATGLSGGFVLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREA******************
Disordered Region (DISOPRED)
MLFLLLKHQLVATGLSGGFVLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREA******DEMRKSLIDSYV
Disordered Region (DISEMBL)
MLFLLLKHQLVATGLSGGFVLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Disordered Region (DISPRO)
MLFLLLKHQLVATGLSGGFVLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLFLLLKHQLVATGLSGGFVLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9M060	245	Eukaryotic translation in	yes	no	0.833	0.632	0.864	2e-76
P56537	245	Eukaryotic translation in	yes	no	0.811	0.616	0.774	8e-64
Q9TU47	245	Eukaryotic translation in	yes	no	0.811	0.616	0.774	1e-63
O55135	245	Eukaryotic translation in	yes	no	0.811	0.616	0.768	2e-63
Q3KRD8	245	Eukaryotic translation in	yes	no	0.811	0.616	0.768	2e-63
Q6GR45	245	Eukaryotic translation in	N/A	no	0.811	0.616	0.768	6e-63
Q6ZM19	245	Eukaryotic translation in	yes	no	0.811	0.616	0.768	1e-62
Q59L13	245	Eukaryotic translation in	N/A	no	0.817	0.620	0.717	2e-61
A4RSQ6	245	Eukaryotic translation in	yes	no	0.811	0.616	0.701	2e-61
Q12522	245	Eukaryotic translation in	yes	no	0.817	0.620	0.703	3e-60

>sp|Q9M060|IF62_ARATH Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1

 Score =  285 bits (728), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/155 (86%), Positives = 150/155 (96%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RI+ERLSALGNCIACND+VALAHTDLD+ETEEIIADVLGVEVFRQTIAGNILVGS
Sbjct: 91  QVVVQRIDERLSALGNCIACNDYVALAHTDLDKETEEIIADVLGVEVFRQTIAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+ SN+GG+VHPHTS+EDL+ELSTLLQVPLVAGTVNRGSEVI AG+TVNDWT+FCGSDT
Sbjct: 151 YCALSNKGGMVHPHTSVEDLEELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTSFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVI+S+FKLREAQP++IVDEMRKSLID+YV
Sbjct: 211 TATELSVIDSIFKLREAQPSSIVDEMRKSLIDTYV 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|P56537|IF6_HUMAN Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1

 Score =  242 bits (618), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 117/151 (77%), Positives = 129/151 (85%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct: 93  QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYC 152

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
            FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct: 153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
           TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct: 213 TELSVVESVFKLNEAQPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Homo sapiens (taxid: 9606)

>sp|Q9TU47|IF6_BOVIN Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2

 Score =  242 bits (618), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/151 (77%), Positives = 129/151 (85%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct: 93  QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYC 152

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
            FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct: 153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
           TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct: 213 TELSVVESVFKLNEAQPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Bos taurus (taxid: 9913)

>sp|O55135|IF6_MOUSE Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 129/151 (85%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct: 93  QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYC 152

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
            FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct: 153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
           TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct: 213 TELSVVESVFKLNEAKPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Mus musculus (taxid: 10090)

>sp|Q3KRD8|IF6_RAT Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=2 SV=1

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 129/151 (85%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct: 93  QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYC 152

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
            FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct: 153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
           TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct: 213 TELSVVESVFKLNEAKPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Rattus norvegicus (taxid: 10116)

>sp|Q6GR45|IF6_XENLA Eukaryotic translation initiation factor 6 OS=Xenopus laevis GN=eif6 PE=2 SV=1

 Score =  239 bits (611), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 130/151 (86%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           + +R+EERLSALGN IACND+VAL H DLDRETEEI+ADVL VEVFRQTIA  +LVGSYC
Sbjct: 93  RIQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADVLKVEVFRQTIAEQVLVGSYC 152

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
           +FSN+GGL+HP TSIED DELS+LLQVPLV GTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct: 153 AFSNQGGLLHPKTSIEDQDELSSLLQVPLVTGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
           TELSVIESVFKL +A P+ I   MR SLIDS
Sbjct: 213 TELSVIESVFKLSDAHPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Xenopus laevis (taxid: 8355)

>sp|Q6ZM19|IF6_DANRE Eukaryotic translation initiation factor 6 OS=Danio rerio GN=eif6 PE=2 SV=1

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/151 (76%), Positives = 130/151 (86%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           + +R+EERLSALGN IACND+VAL H DLDRETEEI+AD L VEVFRQT+A  +LVGSYC
Sbjct: 93  RIQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLKVEVFRQTVAEQVLVGSYC 152

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
           +FSN+GGLVH  TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct: 153 AFSNQGGLVHAKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
           TELSVIESVF+L E QP+AI   MR SLIDS
Sbjct: 213 TELSVIESVFRLSETQPSAIATTMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Danio rerio (taxid: 7955)

>sp|Q59L13|IF6_CANAL Eukaryotic translation initiation factor 6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TIF6 PE=3 SV=1

 Score =  234 bits (597), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 133/152 (87%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           + +R+EERLSALGN I CND+VAL H D++RETEE+IADVLGVEVFRQTIAGN+LVGSYC
Sbjct: 93  KIQRVEERLSALGNVICCNDYVALVHPDIERETEELIADVLGVEVFRQTIAGNVLVGSYC 152

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
           S SN+GGLVHP TSI+D +ELS+LLQVPLVAGTVNRGS V+GAG+ VNDW +  G DTTA
Sbjct: 153 SLSNQGGLVHPQTSIQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDWLSVAGLDTTA 212

Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDSY 185
            ELSVIES+F+L++AQP+AI   +R +LI++Y
Sbjct: 213 PELSVIESIFRLQDAQPDAIGGNLRDTLIETY 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|A4RSQ6|IF6_OSTLU Eukaryotic translation initiation factor 6 OS=Ostreococcus lucimarinus (strain CCE9901) GN=EIF6 PE=3 SV=2

 Score =  234 bits (597), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 132/151 (87%)

Query: 36  KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
           +R EERLSALGNC+ACNDHVAL H D+D+ETEEIIADVLGVEVFRQ++AGN+LVGS+C F
Sbjct: 95  QRTEERLSALGNCVACNDHVALVHPDIDQETEEIIADVLGVEVFRQSVAGNVLVGSFCKF 154

Query: 96  SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 155
           SNRGG+VHP  S++++DELS+LLQVPLVAGT+NRGS+VIGAGL VNDW AFCG DTT+TE
Sbjct: 155 SNRGGMVHPQASVQEVDELSSLLQVPLVAGTINRGSDVIGAGLLVNDWIAFCGLDTTSTE 214

Query: 156 LSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           + VIES+++L  A  +  V ++R SL+D+ V
Sbjct: 215 IQVIESIYQLHGADSSGAVRDIRASLLDTLV 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Ostreococcus lucimarinus (strain CCE9901) (taxid: 436017)

>sp|Q12522|IF6_YEAST Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF6 PE=1 SV=1

 Score =  230 bits (587), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 132/152 (86%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           + +R+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYC
Sbjct: 93  KIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYC 152

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
           S SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GAG+ VND+ A  G DTTA
Sbjct: 153 SLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTA 212

Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDSY 185
            ELSVIES+F+L++AQP +I   +R +LI++Y
Sbjct: 213 PELSVIESIFRLQDAQPESISGNLRDTLIETY 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by the GTPase RIA1/EFL1 and by SDO1. Also required for pre-rRNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
225438420	245	PREDICTED: eukaryotic translation initia	0.833	0.632	0.929	3e-79
118480999	245	unknown [Populus trichocarpa]	0.833	0.632	0.935	4e-79
224109868	245	predicted protein [Populus trichocarpa]	0.833	0.632	0.935	6e-79
356530991	245	PREDICTED: eukaryotic translation initia	0.833	0.632	0.922	2e-78
356559971	245	PREDICTED: eukaryotic translation initia	0.833	0.632	0.922	3e-78
255583438	245	translation initiation factor, putative	0.811	0.616	0.940	4e-78
356576589	245	PREDICTED: eukaryotic translation initia	0.833	0.632	0.916	1e-77
255646745	245	unknown [Glycine max]	0.833	0.632	0.916	2e-77
224081459	184	predicted protein [Populus trichocarpa]	0.833	0.842	0.883	6e-76
242079427	245	hypothetical protein SORBIDRAFT_07g02263	0.833	0.632	0.890	2e-75

>gi|225438420|ref|XP_002276166.1| PREDICTED: eukaryotic translation initiation factor 6-2 isoform 1 [Vitis vinifera] gi|147840016|emb|CAN77181.1| hypothetical protein VITISV_038707 [Vitis vinifera] gi|296082575|emb|CBI21580.3| unnamed protein product [Vitis vinifera]

 Score =  299 bits (765), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/155 (92%), Positives = 151/155 (97%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RIEE+LSALGNCIACNDHVALAHTDLDRETEE++ADVLGVEVFRQTIAGNILVGS
Sbjct: 91  QVVVQRIEEKLSALGNCIACNDHVALAHTDLDRETEEMVADVLGVEVFRQTIAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI AG+TVNDWTAFCGSDT
Sbjct: 151 YCTFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLREAQP+AIVDEMRKSLIDSYV
Sbjct: 211 TATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118480999|gb|ABK92453.1| unknown [Populus trichocarpa]

 Score =  299 bits (765), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/155 (93%), Positives = 152/155 (98%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RI+E+LSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS
Sbjct: 91  QVVVQRIDEKLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAG+TVNDWTAFCGSDT
Sbjct: 151 YCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGITVNDWTAFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLREA+P+AIVDEMRKSLIDSYV
Sbjct: 211 TATELSVIESVFKLREARPSAIVDEMRKSLIDSYV 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109868|ref|XP_002315337.1| predicted protein [Populus trichocarpa] gi|222864377|gb|EEF01508.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 145/155 (93%), Positives = 152/155 (98%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RI+E+LSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS
Sbjct: 91  QVVVQRIDEKLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAG+TVNDWTAFCGSDT
Sbjct: 151 YCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGITVNDWTAFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLREA+P+AIVDEMRKSLIDSYV
Sbjct: 211 TATELSVIESVFKLREARPSAIVDEMRKSLIDSYV 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530991|ref|XP_003534062.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356530993|ref|XP_003534063.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/155 (92%), Positives = 150/155 (96%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RI+ERLSALGNCIACNDHVAL HTDLDRETEE+IADVLGVEVFRQTIAGNILVGS
Sbjct: 91  QVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI AG+TVNDWTAFCGSDT
Sbjct: 151 YCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLREAQP+AIVDEMRKSLID+YV
Sbjct: 211 TATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559971|ref|XP_003548269.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356559973|ref|XP_003548270.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 143/155 (92%), Positives = 150/155 (96%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RI+ERLSALGNCIACNDHVAL HTDLDRETEE+IADVLGVEVFRQTIAGNILVGS
Sbjct: 91  QVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI AG+TVNDWTAFCGSDT
Sbjct: 151 YCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLREAQP+AIVDEMRKSLID+YV
Sbjct: 211 TATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583438|ref|XP_002532478.1| translation initiation factor, putative [Ricinus communis] gi|223527803|gb|EEF29902.1| translation initiation factor, putative [Ricinus communis]

 Score =  295 bits (756), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 142/151 (94%), Positives = 148/151 (98%)

Query: 36  KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
           +RIEERLSALGNCIACNDHVAL HTDLD+ETEE+IADVLGVEVFRQTIAGNILVGSYC+ 
Sbjct: 95  QRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTIAGNILVGSYCAL 154

Query: 96  SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 155
           SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI AG+TVNDWTAFCGSDTTATE
Sbjct: 155 SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATE 214

Query: 156 LSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           LSVIESVFKLREAQP+AIVDEMRKSLIDSYV
Sbjct: 215 LSVIESVFKLREAQPSAIVDEMRKSLIDSYV 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576589|ref|XP_003556413.1| PREDICTED: eukaryotic translation initiation factor 6-2-like [Glycine max]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/155 (91%), Positives = 149/155 (96%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RIEERLSALGNCIACNDHVAL HTDLD+ETEE+IADVLGVEVFRQT+AGNILVGS
Sbjct: 91  QVVVQRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTVAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI AG+TVNDWTAFCGSDT
Sbjct: 151 YCVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLREAQP+AIVDEMRKSLID+YV
Sbjct: 211 TATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646745|gb|ACU23846.1| unknown [Glycine max]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/155 (91%), Positives = 149/155 (96%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RI+ERLSALGNCIACNDHVAL HTDLDRETEE+IADVLGVEVFRQTIAGNILVGS
Sbjct: 91  QVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+FSNRGGLVHPHTSIEDLDEL TLLQVPLVAGTVNRGSEVI AG+TVNDWTAFCGSDT
Sbjct: 151 YCAFSNRGGLVHPHTSIEDLDELFTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLREAQP+AIVDEMRKSLID+YV
Sbjct: 211 TATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081459|ref|XP_002306418.1| predicted protein [Populus trichocarpa] gi|222855867|gb|EEE93414.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 137/155 (88%), Positives = 148/155 (95%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +R++ERLSALGNC+ACNDHVAL HTDLD+ TEE+IADVLGVEVFRQTIAGN+LVGS
Sbjct: 30  QVVVQRVDERLSALGNCVACNDHVALTHTDLDKGTEEMIADVLGVEVFRQTIAGNVLVGS 89

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+FSN+GGLVHPHTSIEDLDELSTLLQVPLVAGT+NRGSEVI AGLTVNDWTAFCGSDT
Sbjct: 90  YCAFSNKGGLVHPHTSIEDLDELSTLLQVPLVAGTINRGSEVIAAGLTVNDWTAFCGSDT 149

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLREAQPNAIV+EMR SLIDSYV
Sbjct: 150 TATELSVIESVFKLREAQPNAIVNEMRNSLIDSYV 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242079427|ref|XP_002444482.1| hypothetical protein SORBIDRAFT_07g022630 [Sorghum bicolor] gi|241940832|gb|EES13977.1| hypothetical protein SORBIDRAFT_07g022630 [Sorghum bicolor]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/155 (89%), Positives = 146/155 (94%)

Query: 32  QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
           Q   +RI+ERLSALGNCIACNDHVAL H DLD+ETEE IADVLGVEVFRQTIAGNILVGS
Sbjct: 91  QVVVQRIDERLSALGNCIACNDHVALTHPDLDKETEEFIADVLGVEVFRQTIAGNILVGS 150

Query: 92  YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
           YC+FSNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVI AG+TVNDWTAFCGSDT
Sbjct: 151 YCAFSNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDT 210

Query: 152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
           TATELSVIESVFKLRE QP AIV++MRKSLIDSYV
Sbjct: 211 TATELSVIESVFKLREGQPTAIVEDMRKSLIDSYV 245

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2078921	245	eIF6A "AT3G55620" [Arabidopsis	0.833	0.632	0.864	1.4e-69
UNIPROTKB|Q9TU47	245	EIF6 "Eukaryotic translation i	0.811	0.616	0.774	1.9e-58
UNIPROTKB|P56537	245	EIF6 "Eukaryotic translation i	0.811	0.616	0.774	1.9e-58
UNIPROTKB|I3L8I5	211	EIF6 "Uncharacterized protein"	0.811	0.715	0.774	1.9e-58
MGI|MGI:1196288	245	Eif6 "eukaryotic translation i	0.811	0.616	0.768	5.1e-58
RGD|1305373	245	Eif6 "eukaryotic translation i	0.811	0.616	0.768	5.1e-58
UNIPROTKB|F1NGL6	242	EIF6 "Eukaryotic translation i	0.795	0.611	0.777	6.6e-58
ZFIN|ZDB-GENE-031118-110	245	eif6 "eukaryotic translation i	0.801	0.608	0.778	2.2e-57
UNIPROTKB|E2R1S5	242	EIF6 "Eukaryotic translation i	0.806	0.619	0.766	5.9e-57
CGD|CAL0001603	245	orf19.1815 [Candida albicans (	0.806	0.612	0.726	4.2e-56

TAIR|locus:2078921 eIF6A "AT3G55620" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 134/155 (86%), Positives = 150/155 (96%)

Query:    32 QPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 91
             Q   +RI+ERLSALGNCIACND+VALAHTDLD+ETEEIIADVLGVEVFRQTIAGNILVGS
Sbjct:    91 QVVVQRIDERLSALGNCIACNDYVALAHTDLDKETEEIIADVLGVEVFRQTIAGNILVGS 150

Query:    92 YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 151
             YC+ SN+GG+VHPHTS+EDL+ELSTLLQVPLVAGTVNRGSEVI AG+TVNDWT+FCGSDT
Sbjct:   151 YCALSNKGGMVHPHTSVEDLEELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTSFCGSDT 210

Query:   152 TATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 186
             TATELSVI+S+FKLREAQP++IVDEMRKSLID+YV
Sbjct:   211 TATELSVIDSIFKLREAQPSSIVDEMRKSLIDTYV 245

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

UNIPROTKB|Q9TU47 EIF6 "Eukaryotic translation initiation factor 6" [Bos taurus (taxid:9913)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 117/151 (77%), Positives = 129/151 (85%)

Query:    34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
             Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct:    93 QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYC 152

Query:    94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
              FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct:   153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query:   154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
             TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct:   213 TELSVVESVFKLNEAQPSTIATSMRDSLIDS 243

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

UNIPROTKB|P56537 EIF6 "Eukaryotic translation initiation factor 6" [Homo sapiens (taxid:9606)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 117/151 (77%), Positives = 129/151 (85%)

Query:    34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
             Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct:    93 QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYC 152

Query:    94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
              FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct:   153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query:   154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
             TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct:   213 TELSVVESVFKLNEAQPSTIATSMRDSLIDS 243

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3L8I5 EIF6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 117/151 (77%), Positives = 129/151 (85%)

Query:    34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
             Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct:    59 QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLRVEVFRQTVADQVLVGSYC 118

Query:    94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
              FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct:   119 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 178

Query:   154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
             TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct:   179 TELSVVESVFKLNEAQPSTIATSMRDSLIDS 209

GO:0005638 "lamin filament" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

MGI|MGI:1196288 Eif6 "eukaryotic translation initiation factor 6" [Mus musculus (taxid:10090)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 116/151 (76%), Positives = 129/151 (85%)

Query:    34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
             Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct:    93 QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYC 152

Query:    94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
              FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct:   153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query:   154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
             TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct:   213 TELSVVESVFKLNEAKPSTIATSMRDSLIDS 243

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005638 "lamin filament" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005882 "intermediate filament" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

RGD|1305373 Eif6 "eukaryotic translation initiation factor 6" [Rattus norvegicus (taxid:10116)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 116/151 (76%), Positives = 129/151 (85%)

Query:    34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
             Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC
Sbjct:    93 QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYC 152

Query:    94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
              FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct:   153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query:   154 TELSVIESVFKLREAQPNAIVDEMRKSLIDS 184
             TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct:   213 TELSVVESVFKLNEAKPSTIATSMRDSLIDS 243

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

UNIPROTKB|F1NGL6 EIF6 "Eukaryotic translation initiation factor 6" [Gallus gallus (taxid:9031)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 115/148 (77%), Positives = 128/148 (86%)

Query:    36 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
             +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC F
Sbjct:    95 QRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVF 154

Query:    96 SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 155
             SN+GG+VHP TSIED DELS+LLQVPLVAGTVNRGSEVIGAG+ VNDW AFCG DTT+TE
Sbjct:   155 SNQGGIVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWCAFCGLDTTSTE 214

Query:   156 LSVIESVFKLREAQPNAIVDEMRKSLID 183
             LSVIES+FKL EAQP+ I   MR SLID
Sbjct:   215 LSVIESIFKLNEAQPSTIATNMRDSLID 242

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

ZFIN|ZDB-GENE-031118-110 eif6 "eukaryotic translation initiation factor 6" [Danio rerio (taxid:7955)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 116/149 (77%), Positives = 129/149 (86%)

Query:    36 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
             +R+EERLSALGN IACND+VAL H DLDRETEEI+AD L VEVFRQT+A  +LVGSYC+F
Sbjct:    95 QRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLKVEVFRQTVAEQVLVGSYCAF 154

Query:    96 SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 155
             SN+GGLVH  TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+TE
Sbjct:   155 SNQGGLVHAKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTE 214

Query:   156 LSVIESVFKLREAQPNAIVDEMRKSLIDS 184
             LSVIESVF+L E QP+AI   MR SLIDS
Sbjct:   215 LSVIESVFRLSETQPSAIATTMRDSLIDS 243

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

UNIPROTKB|E2R1S5 EIF6 "Eukaryotic translation initiation factor 6" [Canis lupus familiaris (taxid:9615)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 115/150 (76%), Positives = 127/150 (84%)

Query:    34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
             Q +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSY 
Sbjct:    93 QIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYS 152

Query:    94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
              FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+
Sbjct:   153 VFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTS 212

Query:   154 TELSVIESVFKLREAQPNAIVDEMRKSLID 183
             TELSV+ESVFKL EAQP+ I   MR SLID
Sbjct:   213 TELSVVESVFKLNEAQPSTIATSMRDSLID 242

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

CGD|CAL0001603 orf19.1815 [Candida albicans (taxid:5476)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 109/150 (72%), Positives = 132/150 (88%)

Query:    36 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
             +R+EERLSALGN I CND+VAL H D++RETEE+IADVLGVEVFRQTIAGN+LVGSYCS 
Sbjct:    95 QRVEERLSALGNVICCNDYVALVHPDIERETEELIADVLGVEVFRQTIAGNVLVGSYCSL 154

Query:    96 SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 155
             SN+GGLVHP TSI+D +ELS+LLQVPLVAGTVNRGS V+GAG+ VNDW +  G DTTA E
Sbjct:   155 SNQGGLVHPQTSIQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDWLSVAGLDTTAPE 214

Query:   156 LSVIESVFKLREAQPNAIVDEMRKSLIDSY 185
             LSVIES+F+L++AQP+AI   +R +LI++Y
Sbjct:   215 LSVIESIFRLQDAQPDAIGGNLRDTLIETY 244

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56538	IF6_DROME	No assigned EC number	0.7278	0.7903	0.6	yes	no
P56537	IF6_HUMAN	No assigned EC number	0.7748	0.8118	0.6163	yes	no
Q5ASA6	IF6_EMENI	No assigned EC number	0.7012	0.8172	0.6153	yes	no
Q9TU47	IF6_BOVIN	No assigned EC number	0.7748	0.8118	0.6163	yes	no
O55135	IF6_MOUSE	No assigned EC number	0.7682	0.8118	0.6163	yes	no
Q2UTN7	IF6_ASPOR	No assigned EC number	0.6883	0.8172	0.6153	yes	no
A4RSQ6	IF6_OSTLU	No assigned EC number	0.7019	0.8118	0.6163	yes	no
Q9M060	IF62_ARATH	No assigned EC number	0.8645	0.8333	0.6326	yes	no
Q551M2	IF6_DICDI	No assigned EC number	0.7259	0.7258	0.5532	yes	no
C9SV08	IF6_VERA1	No assigned EC number	0.7086	0.8064	0.6097	N/A	no
Q6ZM19	IF6_DANRE	No assigned EC number	0.7682	0.8118	0.6163	yes	no
Q59L13	IF6_CANAL	No assigned EC number	0.7171	0.8172	0.6204	N/A	no
Q6GR45	IF6_XENLA	No assigned EC number	0.7682	0.8118	0.6163	N/A	no
D1ZG64	IF6_SORMK	No assigned EC number	0.7058	0.8172	0.6178	N/A	no
O62106	IF6_CAEEL	No assigned EC number	0.58	0.8010	0.6056	yes	no
Q3KRD8	IF6_RAT	No assigned EC number	0.7682	0.8118	0.6163	yes	no
Q12522	IF6_YEAST	No assigned EC number	0.7039	0.8172	0.6204	yes	no
O94476	IF6_SCHPO	No assigned EC number	0.7039	0.8118	0.6188	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
PTZ00136	247	PTZ00136, PTZ00136, eukaryotic translation initiat	2e-93
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	1e-74
smart00654	200	smart00654, eIF6, translation initiation factor 6	8e-65
pfam01912	197	pfam01912, eIF-6, eIF-6 family	1e-63
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	3e-60
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	2e-52
PRK04046	222	PRK04046, PRK04046, translation initiation factor	1e-41
PRK04046	222	PRK04046, PRK04046, translation initiation factor	3e-12
pfam01912	197	pfam01912, eIF-6, eIF-6 family	1e-10
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	1e-08
smart00654	200	smart00654, eIF6, translation initiation factor 6	9e-08
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	2e-06

>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like protein; Provisional

 Score =  271 bits (696), Expect = 2e-93
 Identities = 112/152 (73%), Positives = 131/152 (86%), Gaps = 2/152 (1%)

Query: 36  KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
           +R+EERLSALGNCIACND+VAL H DLDRETEEII DVLGVEVFR TIAGN+LVG+YC F
Sbjct: 95  QRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVF 154

Query: 96  SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 155
           +N+GGLVHP TS++++DELS+LLQVPLVAGTVNRGS+VIGAGL VNDW AFCG DTTATE
Sbjct: 155 TNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATE 214

Query: 156 LSVIESVFKLREAQ--PNAIVDEMRKSLIDSY 185
           +SVIE +FKLR A       + ++R SLID+ 
Sbjct: 215 ISVIERIFKLRRAGGKEGNDLQKLRSSLIDTL 246

Length = 247

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score =  223 bits (570), Expect = 1e-74
 Identities = 80/128 (62%), Positives = 91/128 (71%)

Query: 37  RIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS 96
           R++E LSALGN I CNDH AL H DL +E EEII DVLGVEVFR TIAG   VGS    +
Sbjct: 93  RVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLT 152

Query: 97  NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 156
           N+GGLVHP TS E+L+ELS L +VP+VAGTVN GS+ +GAGL  N   A  GSDTT  EL
Sbjct: 153 NKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPEL 212

Query: 157 SVIESVFK 164
           S IE    
Sbjct: 213 SRIEDALG 220

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score =  197 bits (503), Expect = 8e-65
 Identities = 81/112 (72%), Positives = 91/112 (81%)

Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           + +R+EERL+ALGN I CNDH ALA  DL +ETEEII+DVLGVEVFR TIAGNI VGSYC
Sbjct: 89  EVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYC 148

Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 145
             +N+GGLVHP TS E+L ELS LL VPLVAGTVN GSEV+GAGL  ND  A
Sbjct: 149 VVTNKGGLVHPDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA 200

Length = 200

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score =  194 bits (495), Expect = 1e-63
 Identities = 72/110 (65%), Positives = 84/110 (76%)

Query: 36  KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
           +R+EE+L+ALGN I  ND  AL H DL RETEEIIADVLGVEVFR TIAGN  VGS    
Sbjct: 88  ERLEEKLTALGNVILANDKGALVHPDLSRETEEIIADVLGVEVFRGTIAGNKTVGSAGVA 147

Query: 96  SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 145
           +N+GGLVHP  + E+L+ELS LL VP+ AGTVNRGS ++GAGL  ND  A
Sbjct: 148 TNKGGLVHPDATEEELEELSELLGVPVDAGTVNRGSPLVGAGLVANDKGA 197

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score =  186 bits (475), Expect = 3e-60
 Identities = 68/129 (52%), Positives = 79/129 (61%)

Query: 37  RIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS 96
            +  +L+ALGN I  ND  AL H DL  E E+ I DVLGVEV R TIAG   VGS    +
Sbjct: 93  ILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLT 152

Query: 97  NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 156
           N+GGLVHP TS E+L+ELS L  VP+  GTVN GS  +GAGL  N   A  G DTT  EL
Sbjct: 153 NKGGLVHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPEL 212

Query: 157 SVIESVFKL 165
           + IE     
Sbjct: 213 ARIEDALGF 221

Length = 222

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score =  166 bits (423), Expect = 2e-52
 Identities = 82/129 (63%), Positives = 98/129 (75%)

Query: 37  RIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS 96
           RIEERL+ALGN I CND+ ALA  +LDR+TEE+I+DVLGVEVFR TIAG I VGSY   +
Sbjct: 88  RIEERLTALGNLILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVT 147

Query: 97  NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 156
           NRGGLVHP TS+++ +ELS+LL V LVAGTVNRG+ V+GA +  N   A  G DTT  EL
Sbjct: 148 NRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGACMVANSKGAVVGLDTTGPEL 207

Query: 157 SVIESVFKL 165
           S+IE    L
Sbjct: 208 SIIEEALGL 216

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score =  139 bits (352), Expect = 1e-41
 Identities = 61/131 (46%), Positives = 76/131 (58%)

Query: 37  RIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS 96
            +  +L+ALGN I  ND  AL H +L  E  ++I D LGVEV R TIAG   VGS    +
Sbjct: 92  VLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVT 151

Query: 97  NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 156
           N+GGLVHP  + E+L  L  L +V +  GTVN GS ++G+GL  N   A  GSDTT  EL
Sbjct: 152 NKGGLVHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPEL 211

Query: 157 SVIESVFKLRE 167
             IE      E
Sbjct: 212 GRIEDALGFIE 222

Length = 222

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 42/161 (26%), Positives = 59/161 (36%), Gaps = 44/161 (27%)

Query: 49  IACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSI 108
               D  AL   DLD +T E I + LGVEV   TIAG+ LVGS  + ++ G LV      
Sbjct: 17  ARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLD 76

Query: 109 EDLDELSTL-------------------------------------------LQVPLVAG 125
           E+L+ L                                              L V +  G
Sbjct: 77  EELELLKEALDLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERG 136

Query: 126 TVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLR 166
           T+  G + +G+   V +       D T  EL  +E +FK+ 
Sbjct: 137 TI-AGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVE 176

Length = 222

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 27/79 (34%), Positives = 38/79 (48%)

Query: 45  LGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHP 104
           +G      +  AL    L  E   +I + LGVEV   +IAG+ LVGS    ++ G LV  
Sbjct: 10  IGVFARATNDYALVPPGLSEEFYSVIEEELGVEVVETSIAGSRLVGSLTVGNSNGLLVPS 69

Query: 105 HTSIEDLDELSTLLQVPLV 123
             + E+LD L   L V + 
Sbjct: 70  TATDEELDHLKESLDVNVE 88

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 40  ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG 99
           E    +G      +  AL    LD +  ++I +VLGV V   TIAG+ LVG+  + ++ G
Sbjct: 9   EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNG 68

Query: 100 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVI 159
            LV      E+L  L   L   +    +      +G  +  ND  A    D +      I
Sbjct: 69  LLVPYGVRDEELRRLKNAL--GVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEI 126

Query: 160 ESV 162
           E V
Sbjct: 127 EDV 129

Length = 222

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 40  ERLSALGNC-----IACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCS 94
           +RLS  G+      I   +   L     D     +I +VLGV V   +I G+ L+G    
Sbjct: 1   DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTV 60

Query: 95  FSNRGGLVHPHTSIED-LDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
             N  GL+ P+T+ +  L  L   L   +    V      +G  +  ND  A    D + 
Sbjct: 61  -GNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSK 119

Query: 154 TELSVIESV 162
               +I  V
Sbjct: 120 ETEEIISDV 128

Length = 200

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 40  ERLSALGNC-----IACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCS 94
            RLS  G+          +   L     D        + LGV V R TI G+ LVGS   
Sbjct: 2   IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIGGSRLVGSLTV 61

Query: 95  FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTAT 154
            ++ G L+   T+ ++L  +   L   +    V      +G  +  ND  A    D +  
Sbjct: 62  GNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKE 121

Query: 155 ELSVIESVFK 164
              +IE V  
Sbjct: 122 AEEIIEDVLG 131

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	99.88

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=2.9e-51  Score=352.71  Aligned_cols=173  Identities=66%  Similarity=1.061  Sum_probs=162.8

Q ss_pred             hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868           12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT   82 (186)
Q Consensus        12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt   82 (186)
                      .+||++|++ +++...         +||++++|.++++|++|+|||++|||+||++||++++++.+.|+|+||||+++++
T Consensus        63 ~~gN~nGll-vp~~~~d~El~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~t  141 (247)
T PTZ00136         63 TVGNRKGLL-VPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTT  141 (247)
T ss_pred             EeecCCeEE-cCCcCCHHHHHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEE
Confidence            356666666 554443         7888999999999999999999999999999999999999999999999999999


Q ss_pred             eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHh
Q 029868           83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV  162 (186)
Q Consensus        83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~Iedv  162 (186)
                      |||+++||+++++||+|+||||+++++|+++|+++|+|++.+||+|+|.++||++++|||||++|||+||++|+++|+++
T Consensus       142 Iag~~lVGs~~v~Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~  221 (247)
T PTZ00136        142 IAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERI  221 (247)
T ss_pred             ecCCceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC--CCCchhHHHHHHHhhhhc
Q 029868          163 FKLRE--AQPNAIVDEMRKSLIDSY  185 (186)
Q Consensus       163 L~V~~--~~~~~~~~~~~~~~~~~~  185 (186)
                      ||++.  ++|..+...+|+++||++
T Consensus       222 l~v~~~~~~~~~~~~~~~~~~~~~~  246 (247)
T PTZ00136        222 FKLRRAGGKEGNDLQKLRSSLIDTL  246 (247)
T ss_pred             hCCCcccCCchhhHHHHHHHHHHhh
Confidence            99999  777778789999999987

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-45  Score=311.76  Aligned_cols=158  Identities=45%  Similarity=0.607  Sum_probs=147.9

Q ss_pred             hhhhhccCcceEEEecCcccccCCC--------------CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhh
Q 029868            8 HQLVATGLSGGFVLVTKMGFSCHTQ--------------PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV   73 (186)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~   73 (186)
                      -.|.-|.+.|.+.++|++++++|..              ++|.++++|+||+||.|+|||+.||+||+++++..|.|+|+
T Consensus        50 ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~  129 (222)
T COG1976          50 TTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDV  129 (222)
T ss_pred             EEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhh
Confidence            3456677777777777777766654              66889999999999999999999999999999999999999


Q ss_pred             hCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCH
Q 029868           74 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA  153 (186)
Q Consensus        74 LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~  153 (186)
                      |||++++++|||.++|||+++.||+|+||||.++++|+|+|+++|+|++..||+|+|.++||+|+||||||++||.+||+
T Consensus       130 LgVev~rgtIag~~tVGsa~v~tnkG~LvhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTg  209 (222)
T COG1976         130 LGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTG  209 (222)
T ss_pred             cceEEEEEEecCccceeeEEEEecCcceeCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 029868          154 TELSVIESVFKL  165 (186)
Q Consensus       154 ~Ei~~IedvL~V  165 (186)
                      ||+.+||++|+.
T Consensus       210 pEl~rIe~aLg~  221 (222)
T COG1976         210 PELARIEDALGF  221 (222)
T ss_pred             chHHHHHHHhcc
Confidence            999999999984

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=4.5e-40  Score=279.36  Aligned_cols=160  Identities=39%  Similarity=0.551  Sum_probs=152.3

Q ss_pred             hhhhhhccCcceEEEecCcccccCCC--------------CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHh
Q 029868            7 KHQLVATGLSGGFVLVTKMGFSCHTQ--------------PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD   72 (186)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d   72 (186)
                      |-.+.-+.+.|.|+++|+.+..+|..              ++|.+++.+++++|+++++||++|++||+++++.++.|+|
T Consensus        48 ~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l~e~L~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~  127 (222)
T PRK04046         48 ETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEALDLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIED  127 (222)
T ss_pred             EEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHHHHhcCceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHH
Confidence            34566788999999999999988776              4688888999999999999999999999999999999999


Q ss_pred             hhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCC
Q 029868           73 VLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT  152 (186)
Q Consensus        73 ~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt  152 (186)
                      +||||+.+.+|++.++||+++++||+|++|||+++++|+++|+++|+|++.++|+|+|.++||++++|||+|++|||+||
T Consensus       128 ~L~V~v~~~ti~~~~~VGs~ivaNd~G~lv~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt  207 (222)
T PRK04046        128 TLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTT  207 (222)
T ss_pred             hhCceEEEEecCCccceeeEEEEeCCEEEECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 029868          153 ATELSVIESVFKLR  166 (186)
Q Consensus       153 ~~Ei~~IedvL~V~  166 (186)
                      ++|+++|+++||..
T Consensus       208 ~~El~~ie~~l~~~  221 (222)
T PRK04046        208 GPELGRIEDALGFI  221 (222)
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999999974

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-40  Score=278.00  Aligned_cols=173  Identities=73%  Similarity=1.061  Sum_probs=166.0

Q ss_pred             ccCcceEEEecCc---------ccccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEee
Q 029868           13 TGLSGGFVLVTKM---------GFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI   83 (186)
Q Consensus        13 ~~~~~~~~~~~~~---------~~~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttI   83 (186)
                      .||-+|++ +++.         +++||+.+.+.|+++|.+|+||.|+|||++|+|||++++++.+.|+|+|+|+|++.+|
T Consensus        64 ~GNr~GLL-vp~~tTDqElqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqti  142 (245)
T KOG3185|consen   64 VGNRHGLL-VPHTTTDQELQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTI  142 (245)
T ss_pred             ccCcCcee-cCCcCcHHHHHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecc
Confidence            36777777 5543         4499999999999999999999999999999999999999999999999999999999


Q ss_pred             eCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhh
Q 029868           84 AGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVF  163 (186)
Q Consensus        84 ags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL  163 (186)
                      ++.++|||+++.+|+|++|||.++-|+.++|+.+|.|++..||+|+|+..+|+|+++|||-|++|-+||..|+..|+.+|
T Consensus       143 a~n~LvGsyc~lsnqG~lVhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiF  222 (245)
T KOG3185|consen  143 AQNSLVGSYCALSNQGGLVHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIF  222 (245)
T ss_pred             cCCceeeeeEEEcCCCceecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCchhHHHHHHHhhhhcC
Q 029868          164 KLREAQPNAIVDEMRKSLIDSYV  186 (186)
Q Consensus       164 ~V~~~~~~~~~~~~~~~~~~~~~  186 (186)
                      ++.+|||..+..++|+++||+|+
T Consensus       223 kL~~aqp~~i~~~~R~~lid~~~  245 (245)
T KOG3185|consen  223 KLNEAQPSSISSELRDTLIDSYV  245 (245)
T ss_pred             hhcccCchhHHHHHHHHHHHhcC
Confidence            99999999998999999999985

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=7.4e-40  Score=277.22  Aligned_cols=160  Identities=55%  Similarity=0.810  Sum_probs=152.1

Q ss_pred             hhhhhhhccCcceEEEecCcccccCCC------------CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhh
Q 029868            6 LKHQLVATGLSGGFVLVTKMGFSCHTQ------------PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV   73 (186)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~   73 (186)
                      .|-.|.-|.++|.|+++|+....+|+.            ++|.+++++.+++||++++||++|++||.++++.++.|+|.
T Consensus        44 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~  123 (215)
T TIGR00323        44 LHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDV  123 (215)
T ss_pred             EEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHh
Confidence            345677888999999999888866554            88999999999999999999999999999999999999999


Q ss_pred             hCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCH
Q 029868           74 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA  153 (186)
Q Consensus        74 LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~  153 (186)
                      ||++|.+.+|++..++|+++++||+|+||||+++++|+|.|+|+|||++.++|+|+|.++|||+++|||+|++|||+||+
T Consensus       124 L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~  203 (215)
T TIGR00323       124 LGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTG  203 (215)
T ss_pred             cCCcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 029868          154 TELSVIESVFKL  165 (186)
Q Consensus       154 ~Ei~~IedvL~V  165 (186)
                      +|+++|+++||+
T Consensus       204 ~El~~ie~~l~~  215 (215)
T TIGR00323       204 PELSIIEEALGL  215 (215)
T ss_pred             HHHHHHHHHhCc
Confidence            999999999985

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=8.5e-41  Score=280.21  Aligned_cols=132  Identities=51%  Similarity=0.712  Sum_probs=105.3

Q ss_pred             hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868           12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT   82 (186)
Q Consensus        12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt   82 (186)
                      ++||++|++ +++...         ++| +++|+++++|+||+||+|+|||++|++||++++++.+.|+|+|||||++++
T Consensus        59 ~~GNsnGll-vp~~~~d~El~~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~t  136 (199)
T PF01912_consen   59 CVGNSNGLL-VPSIITDEELEHLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGT  136 (199)
T ss_dssp             -EEESSEEE-EETT--HHHHHHHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--
T ss_pred             EEEcCCEEE-ECCcCCHHHHHHHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEE
Confidence            345555555 444443         455 689999999999999999999999999999999999999999999999999


Q ss_pred             eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceE
Q 029868           83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA  145 (186)
Q Consensus        83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~Ga  145 (186)
                      |||.++|||++++||+|+||||+++++|+++|+++|+|++..||+|+|.++||+|++|||||+
T Consensus       137 ia~~~~VGs~~v~tn~G~LvhP~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~  199 (199)
T PF01912_consen  137 IAGIKTVGSAAVATNKGGLVHPDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA  199 (199)
T ss_dssp             BTTBS-CCCSEEE-SSEEEE-TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred             ecCcccceeeEEEeCcEEEECCCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence            999999999999999999999999999999999999999999999999999999999999996

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=4.7e-39  Score=273.06  Aligned_cols=159  Identities=50%  Similarity=0.704  Sum_probs=150.4

Q ss_pred             hhhhhhhccCcceEEEecCcccccCCC------------C--cEEEeccCCC--ceeeEEEeeCcEEEEecCCChhHHHH
Q 029868            6 LKHQLVATGLSGGFVLVTKMGFSCHTQ------------P--QTKRIEERLS--ALGNCIACNDHVALAHTDLDRETEEI   69 (186)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~--~v~~~~~~~~--aiGn~i~aND~~alVpp~l~~~~~~~   69 (186)
                      .|-.|.-|.+.|.|+++|+....+|..            +  +|.+++.+.+  ++||++++||++|++||.++++.++.
T Consensus        46 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~  125 (220)
T cd00527          46 VRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEI  125 (220)
T ss_pred             EEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHH
Confidence            355678899999999999999988864            3  3888877777  99999999999999999999999999


Q ss_pred             HHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcC
Q 029868           70 IADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGS  149 (186)
Q Consensus        70 I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p  149 (186)
                      |+|+|+|+|++.+|++.+.+|+++++||+|+|+||+++++|+|.|+|+|||++.++|+|+|.++|||+++|||+|++|||
T Consensus       126 i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~  205 (220)
T cd00527         126 IEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGS  205 (220)
T ss_pred             HHHhcCCcEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhhC
Q 029868          150 DTTATELSVIESVFK  164 (186)
Q Consensus       150 ~tt~~Ei~~IedvL~  164 (186)
                      +||++|+++|+++||
T Consensus       206 ~tt~~El~~ie~~l~  220 (220)
T cd00527         206 DTTGPELSRIEDALG  220 (220)
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999999996

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=2.6e-37  Score=259.12  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=148.8

Q ss_pred             hhhhhhccCcceEEEecCcccccCCC--------------CcEEEec-cCCCceeeEEEeeCcEEEEecCCChhHHHHHH
Q 029868            7 KHQLVATGLSGGFVLVTKMGFSCHTQ--------------PQTKRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIA   71 (186)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~v~~~~-~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~   71 (186)
                      |-.|.-|.+.|.|++.|+....+|..              ++|.++. ++++++|+++++||+++++||.++++.++.|+
T Consensus         2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~i~   81 (200)
T smart00654        2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHLR   81 (200)
T ss_pred             eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHHHH
Confidence            34567789999999999999988876              4455555 89999999999999999999999999999999


Q ss_pred             hhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcC
Q 029868           72 DVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGS  149 (186)
Q Consensus        72 d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p  149 (186)
                      +.|+  ++|.+.+.. .+.+|+++++||+|+|+||+++++|+|.|+|+|+|++.++|+ +|.++|||+++|||+|++|||
T Consensus        82 ~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv~~  159 (200)
T smart00654       82 NSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLVHP  159 (200)
T ss_pred             HhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEECC
Confidence            9997  999988887 999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             CCCHHHHHHHHHhhCCCC
Q 029868          150 DTTATELSVIESVFKLRE  167 (186)
Q Consensus       150 ~tt~~Ei~~IedvL~V~~  167 (186)
                      +||++|+++|+++||++.
T Consensus       160 ~tt~~El~~ie~~l~v~~  177 (200)
T smart00654      160 DTSEEELKELSELLGVPL  177 (200)
T ss_pred             CCCHHHHHHHHHHhCCCc
Confidence            999999999999999996

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=4.8e-37  Score=260.86  Aligned_cols=160  Identities=21%  Similarity=0.217  Sum_probs=151.2

Q ss_pred             hhhhhhhccCcceEEEecCcccccCCCC------------cEEE---eccCCCceeeEEEeeCcEEEEecCCChhHHHHH
Q 029868            6 LKHQLVATGLSGGFVLVTKMGFSCHTQP------------QTKR---IEERLSALGNCIACNDHVALAHTDLDRETEEII   70 (186)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~v~~---~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I   70 (186)
                      .|-.+.-+.+.|.|+..++....+|..+            +|.+   .-++.+++|+|+++||+++++||.++++.++.|
T Consensus         3 ~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l   82 (222)
T PRK04046          3 RRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELL   82 (222)
T ss_pred             EEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcCceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHH
Confidence            3556788999999999999999999883            4433   467999999999999999999999999999999


Q ss_pred             HhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCC
Q 029868           71 ADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSD  150 (186)
Q Consensus        71 ~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~  150 (186)
                      +|.|||++.++++ +++++|+++++||+|+++||.++++|+|.|++.|+|++.++++ +|.+++||+++|||+||+|||+
T Consensus        83 ~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv~p~  160 (222)
T PRK04046         83 KEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLVHPD  160 (222)
T ss_pred             HHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEECCC
Confidence            9999999999999 9999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             CCHHHHHHHHHhhCCCC
Q 029868          151 TTATELSVIESVFKLRE  167 (186)
Q Consensus       151 tt~~Ei~~IedvL~V~~  167 (186)
                      +|++|+++|+++||++.
T Consensus       161 ~t~~ei~~i~~~l~v~~  177 (222)
T PRK04046        161 ATDEELKFLEDLFKVEV  177 (222)
T ss_pred             CCHHHHHHHHHHhCCce
Confidence            99999999999999996

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=3.1e-35  Score=246.57  Aligned_cols=132  Identities=65%  Similarity=0.935  Sum_probs=122.8

Q ss_pred             ccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEee
Q 029868           13 TGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI   83 (186)
Q Consensus        13 ~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttI   83 (186)
                      .+|++|++ +++...         +||+.++|.+++.+++++||+++|||++|++||+++++.++.|+|+||||+.+.||
T Consensus        60 ~~N~~g~l-v~~~~~~~el~~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi  138 (200)
T smart00654       60 VGNSNGLL-VPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI  138 (200)
T ss_pred             EEcCCEEE-eCCCCCHHHHHHHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe
Confidence            45666666 333332         67788999999999999999999999999999999999999999999999999999


Q ss_pred             eCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceE
Q 029868           84 AGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA  145 (186)
Q Consensus        84 ags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~Ga  145 (186)
                      +|+++|||.+++||+|+||||+++++|+++|+++|++++..||+|+|.++||+|++|||+|+
T Consensus       139 ~G~~~VGs~~VannkG~lv~~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~  200 (200)
T smart00654      139 AGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA  200 (200)
T ss_pred             cCcccceEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence            99999999999999999999999999999999999999999999999999999999999996

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=2.8e-35  Score=246.96  Aligned_cols=126  Identities=25%  Similarity=0.333  Sum_probs=110.4

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhc-
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL-  118 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l-  118 (186)
                      ++.++||+|+++||+||++||+++++..+.|+++|++|+++|+|+||+++|+|++||+||+|||+.++|+|++.|++.+ 
T Consensus         6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~   85 (199)
T PF01912_consen    6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP   85 (199)
T ss_dssp             TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred             eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868          119 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  167 (186)
Q Consensus       119 ~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~  167 (186)
                      ++++  .+++.+.+++||.++|||+||+|||++++++.+.|+|+|||++
T Consensus        86 ~v~V--~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV  132 (199)
T PF01912_consen   86 DVNV--EVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEV  132 (199)
T ss_dssp             TSEE--EEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEE
T ss_pred             CceE--EEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceE
Confidence            5555  8999999999999999999999999999999999999999997

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.5e-33  Score=236.70  Aligned_cols=127  Identities=30%  Similarity=0.451  Sum_probs=123.9

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCe--------------------
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG--------------------   99 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G--------------------   99 (186)
                      ++.++||+|+.++|+||++||+.++++++.|+|+|+||+++++|+||++||+|+++|+||                    
T Consensus         9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~   88 (222)
T COG1976           9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG   88 (222)
T ss_pred             cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence            688999999999999999999999999999999999999999999999999999997777                    


Q ss_pred             -----------------------EEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHH
Q 029868          100 -----------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL  156 (186)
Q Consensus       100 -----------------------~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei  156 (186)
                                             +|+||+.++++.|.|+|+|||++.++|+ +|.+.|||..++|++|+||||++|++|+
T Consensus        89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El  167 (222)
T COG1976          89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL  167 (222)
T ss_pred             ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence                                   9999999999999999999999999998 9999999999999999999999999999


Q ss_pred             HHHHHhhCCCC
Q 029868          157 SVIESVFKLRE  167 (186)
Q Consensus       157 ~~IedvL~V~~  167 (186)
                      +++++.|||+.
T Consensus       168 e~Lse~f~V~v  178 (222)
T COG1976         168 EELSELFGVPV  178 (222)
T ss_pred             HHHHHHhCeeE
Confidence            99999999997

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=3.8e-33  Score=236.97  Aligned_cols=159  Identities=19%  Similarity=0.218  Sum_probs=148.4

Q ss_pred             hhhhhhccCcceEEEecCcccccCCC------------CcEEEec---cCCCceeeEEEeeCcEEEEecCCChhHHHHHH
Q 029868            7 KHQLVATGLSGGFVLVTKMGFSCHTQ------------PQTKRIE---ERLSALGNCIACNDHVALAHTDLDRETEEIIA   71 (186)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~v~~~~---~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~   71 (186)
                      |-.+..+.|+|.|+..++.-..+|..            +++.++.   .+.+.+|+|+++||+++++|+..+++..+.|+
T Consensus         3 ~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~   82 (220)
T cd00527           3 RLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIR   82 (220)
T ss_pred             eEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhCCcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHH
Confidence            44567789999999999988888877            4455554   78899999999999999999999999999999


Q ss_pred             hhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcC
Q 029868           72 DVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGS  149 (186)
Q Consensus        72 d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p  149 (186)
                      +.|+  |+++++++.+| ++|.++++||+|+||||.++++|++.|+++|++++.++++ ++.+++||.++|||+||+|||
T Consensus        83 ~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i-~~~~avGn~iv~Nd~g~LvhP  160 (220)
T cd00527          83 NSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTI-AGIKTVGSAGVLTNKGGLVHP  160 (220)
T ss_pred             HhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEc-cCcccceeEEEEeccEEEECC
Confidence            9999  99999999999 9999999999999999999999999999999999999998 679999999999999999999


Q ss_pred             CCCHHHHHHHHHhhCCCC
Q 029868          150 DTTATELSVIESVFKLRE  167 (186)
Q Consensus       150 ~tt~~Ei~~IedvL~V~~  167 (186)
                      ++|++|++.|+|+|||+.
T Consensus       161 ~~s~ee~~~i~d~L~V~v  178 (220)
T cd00527         161 KTSDEELEELSELFKVPV  178 (220)
T ss_pred             CCCHHHHHHHHHHhCCcE
Confidence            999999999999999996

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=1.8e-32  Score=236.28  Aligned_cols=127  Identities=17%  Similarity=0.286  Sum_probs=121.2

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCe------------------
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------   99 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G------------------   99 (186)
                      ++.++||+|+++||+||++||+.++++.+.++++|+  +|+++|+|+||+++|+|++||+||                  
T Consensus         8 ~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~   87 (247)
T PTZ00136          8 ENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNS   87 (247)
T ss_pred             cCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHHHHHHHHh
Confidence            678999999999999999999999999999999999  999999999999999999999999                  


Q ss_pred             ---------------------------EEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCC
Q 029868          100 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT  152 (186)
Q Consensus       100 ---------------------------~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt  152 (186)
                                                 ++|||+.+++..+.|++.|+|++.++++ +|.+.||+..++||+||+|||+++
T Consensus        88 l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s  166 (247)
T PTZ00136         88 LPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTI-AGNVLVGTYCVFTNQGGLVHPKTS  166 (247)
T ss_pred             CcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEe-cCCceEEEEEEEeCcEEEECCCCC
Confidence                                       7888888888888888888888889998 999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC
Q 029868          153 ATELSVIESVFKLRE  167 (186)
Q Consensus       153 ~~Ei~~IedvL~V~~  167 (186)
                      ++|++.|+|+|||+.
T Consensus       167 ~ee~~~i~d~L~V~v  181 (247)
T PTZ00136        167 VQEMDELSSLLQVPL  181 (247)
T ss_pred             HHHHHHHHHHhCCcE
Confidence            999999999999996

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=2e-32  Score=231.88  Aligned_cols=156  Identities=17%  Similarity=0.203  Sum_probs=145.1

Q ss_pred             hhhhhccCcceEEEecCcccccCCC------------CcEEEec---cCCCceeeEEEeeCcEEEEecCCChhHHHHHHh
Q 029868            8 HQLVATGLSGGFVLVTKMGFSCHTQ------------PQTKRIE---ERLSALGNCIACNDHVALAHTDLDRETEEIIAD   72 (186)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~l~~~------------~~v~~~~---~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d   72 (186)
                      -++..++++|.|...++--..+|..            +++.++.   .+.+.||+|+++||+++++|+..+++..+.+++
T Consensus         2 ~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e   81 (215)
T TIGR00323         2 TQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELEVPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPD   81 (215)
T ss_pred             eeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhCCcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHh
Confidence            3567889999999999988888877            3343332   688999999999999999999999999999999


Q ss_pred             hhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCC
Q 029868           73 VLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT  152 (186)
Q Consensus        73 ~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt  152 (186)
                      .|+|+++++++   +++|+++++||+|+|+||.++++|++.|++.|++++.+.++ ++.+.+|+.+++||+||+|||+++
T Consensus        82 ~l~V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i-~~~~~vG~~~v~nN~G~lvhP~~s  157 (215)
T TIGR00323        82 SLKVQRIEERL---TALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTI-AGLITVGSYAVVTNRGGLVHPQTS  157 (215)
T ss_pred             hcCeEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEec-ccccccceEEEEeCcEEEECCCCC
Confidence            99999999999   99999999999999999999999999999999999999887 999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC
Q 029868          153 ATELSVIESVFKLRE  167 (186)
Q Consensus       153 ~~Ei~~IedvL~V~~  167 (186)
                      ++|++.|+|+|||+.
T Consensus       158 ~ee~~~i~d~LgV~v  172 (215)
T TIGR00323       158 VQEQEELSSLLGVEL  172 (215)
T ss_pred             HHHHHHHHHHhCCcE
Confidence            999999999999996

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=2.3e-22  Score=169.02  Aligned_cols=128  Identities=20%  Similarity=0.299  Sum_probs=125.7

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL  117 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~  117 (186)
                      ++.+.||+|...++.||+|.-.-++.+...++..|+  +|++.|+|+|++++|++++||.+|+|||..++|+|+..|++.
T Consensus         8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS   87 (245)
T KOG3185|consen    8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS   87 (245)
T ss_pred             cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence            567899999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868          118 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  167 (186)
Q Consensus       118 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~  167 (186)
                      |+-+|...++....+++|+.+.|||+-|+|||+++.+.-+.|.|+|+|++
T Consensus        88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeV  137 (245)
T KOG3185|consen   88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEV  137 (245)
T ss_pred             CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheee
Confidence            99999999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
3j2i_B	245	Structure Of Late Pre-60s Ribosomal Subunits With N		3e-61
4a18_J	248	T.Thermophila 60s Ribosomal Subunit In Complex With		7e-58
1g62_A	224	Crystal Structure Of S.Cerevisiae Eif6 Length = 224		2e-55
4adx_I	222	The Cryo-Em Structure Of The Archaeal 50s Ribosomal		6e-17
1g61_A	228	Crystal Structure Of M.Jannaschii Eif6 Length = 228		2e-13

>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Export Factor Arx1 Bound At The Peptide Exit Tunnel Length = 245

Iteration: 1
 Score =  230 bits (587), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 132/152 (86%)
Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           + +R+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYC
Sbjct: 93  KIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYC 152
Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
           S SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GAG+ VND+ A  G DTTA
Sbjct: 153 SLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTA 212
Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDSY 185
            ELSVIES+F+L++AQP +I   +R +LI++Y
Sbjct: 213 PELSVIESIFRLQDAQPESISGNLRDTLIETY 244

>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 248

Iteration: 1
 Score =  219 bits (558), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 124/149 (83%)
Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           + +RIEE+LSALGNC+  ND+VAL H DLDRE+EEIIAD LGVEVFR TIA N+LVG+YC
Sbjct: 96  RVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYC 155
Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
             +NRGGLVHP  S+E+LDEL+ LLQ+PL AGT+NRGS+VIGAGL VNDW AFCG DTT+
Sbjct: 156 VINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTS 215
Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLI 182
           TE+SV+E++FKL E +   + +EMRK  +
Sbjct: 216 TEISVVENIFKLNEMKDENMDNEMRKDFV 244

>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6 Length = 224

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/132 (75%), Positives = 117/132 (88%)
Query: 34  QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
           + +R+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYC
Sbjct: 93  KIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYC 152
Query: 94  SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
           S SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GAG+ VND+ A  G DTTA
Sbjct: 153 SLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTA 212
Query: 154 TELSVIESVFKL 165
            ELSVIES+F+L
Sbjct: 213 PELSVIESIFRL 224

>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6 Length = 222

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 5   LLKHQLVATGLSGGFVLVTKMGFSCHTQPQTK-------------RIEERLSALGNCIAC 51
           +LK  +  + L+G   +    GF    Q   +             RI ER +A+GN +  
Sbjct: 46  VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAVRIPERFTAVGNLVLA 105
Query: 52  NDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDL 111
           ND+ A+A   L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++
Sbjct: 106 NDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEI 165
Query: 112 DELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167
             +   L V    GTVN G  +IGA    N      G +TT  EL+ IE      E
Sbjct: 166 GIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221

>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 Length = 228

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 38  IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSN 97
           I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   TIA    VGS    +N
Sbjct: 100 IKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTN 158
Query: 98  RGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 156
           +G L HP    ++L+ L +L +V  +  GT N+G+  +GA +  N   A  G DTT  EL
Sbjct: 159 KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPEL 218
Query: 157 SVIESVFKL 165
            +IE    L
Sbjct: 219 LIIEDALGL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	6e-71
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	2e-10
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	2e-63
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	2e-10
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	3e-63
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	3e-13
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	1e-58
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score =  214 bits (546), Expect = 6e-71
 Identities = 100/149 (67%), Positives = 124/149 (83%)

Query: 36  KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
           +RIEE+LSALGNC+  ND+VAL H DLDRE+EEIIAD LGVEVFR TIA N+LVG+YC  
Sbjct: 98  RRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVI 157

Query: 96  SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 155
           +NRGGLVHP  S+E+LDEL+ LLQ+PL AGT+NRGS+VIGAGL VNDW AFCG DTT+TE
Sbjct: 158 NNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTE 217

Query: 156 LSVIESVFKLREAQPNAIVDEMRKSLIDS 184
           +SV+E++FKL E +   + +EMRK  + +
Sbjct: 218 ISVVENIFKLNEMKDENMDNEMRKDFVMN 246

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 2/124 (1%)

Query: 43  SALGNCIACNDHVALAHTDLDRETEEIIADVL--GVEVFRQTIAGNILVGSYCSFSNRGG 100
           + +G          L           +    L   + V   +I G  +VG     +  G 
Sbjct: 14  NDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGL 73

Query: 101 LVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 160
           LV    +  +L  +   L   +    +      +G  +  ND+ A    D       +I 
Sbjct: 74  LVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIA 133

Query: 161 SVFK 164
               
Sbjct: 134 DTLG 137

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score =  194 bits (494), Expect = 2e-63
 Identities = 100/138 (72%), Positives = 118/138 (85%)

Query: 28  SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNI 87
           S     + +R+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNI
Sbjct: 87  SLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNI 146

Query: 88  LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC 147
           LVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GAG+ VND+ A  
Sbjct: 147 LVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVT 206

Query: 148 GSDTTATELSVIESVFKL 165
           G DTTA ELSVIES+F+L
Sbjct: 207 GLDTTAPELSVIESIFRL 224

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 2/124 (1%)

Query: 43  SALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGG 100
           + +G      +   L                LG  + +   TIAG  ++G   + + RG 
Sbjct: 11  NEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGL 70

Query: 101 LVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 160
           LV   T+ ++L  L   L   +    V      +G  +  ND+ A    D       +I 
Sbjct: 71  LVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELIS 130

Query: 161 SVFK 164
            V  
Sbjct: 131 DVLG 134

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score =  193 bits (493), Expect = 3e-63
 Identities = 50/138 (36%), Positives = 72/138 (52%)

Query: 31  TQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVG 90
              +  RI ER +A+GN +  ND+ A+A   L  +  ++I DVL V+V   T+AG  +VG
Sbjct: 85  AGVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVG 144

Query: 91  SYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSD 150
           S  + +NRG L++P  S E++  +   L V    GTVN G  +IGA    N      G +
Sbjct: 145 SMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEE 204

Query: 151 TTATELSVIESVFKLREA 168
           TT  EL+ IE      E 
Sbjct: 205 TTGPELARIEEALGFLEG 222

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score = 64.6 bits (157), Expect = 3e-13
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 40  ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG 99
                LG  I+  D VAL   +   + E ++ + L VEV + +I+G+ L G+    ++ G
Sbjct: 8   SGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGSSLNGALAVGNSNG 67

Query: 100 GLVHPHTSIEDLDEL-STLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSV 158
            +V       ++D L +  ++   +          +G  +  ND  A      +   L V
Sbjct: 68  FVVSNQAMDREIDALAAAGVEAVRIPERFT----AVGNLVLANDNGAVASPLLSDDALQV 123

Query: 159 IESVFK 164
           I  V +
Sbjct: 124 IGDVLE 129

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score =  182 bits (462), Expect = 1e-58
 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 36  KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
           + I+ + +ALGN I  ND  AL   +L  + ++ I D L VEV   TIA    VGS    
Sbjct: 98  EIIKSKNTALGNLILTNDKGALISPELK-DFKKDIEDSLNVEVEIGTIAELPTVGSNAVV 156

Query: 96  SNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTTAT 154
           +N+G L HP    ++L+ L +L +V  +  GT N+G+  +GA +  N   A  G DTT  
Sbjct: 157 TNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGP 216

Query: 155 ELSVIESVFKL 165
           EL +IE    L
Sbjct: 217 ELLIIEDALGL 227

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score = 60.0 bits (145), Expect = 1e-11
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 43  SALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 102
             +G      + + L    LD++    +++VL  +  +  I G+ LVGS    +  G L+
Sbjct: 13  PTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLL 72

Query: 103 HPHTSIEDLDELSTLLQVPLVAGTVNRGSE---VIGAGLTVNDWTAFCGSDTTATELSVI 159
                 E+LD +   L+   +   V         +G  +  ND  A    +    +   I
Sbjct: 73  PKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFK-KDI 131

Query: 160 ESVFK 164
           E    
Sbjct: 132 EDSLN 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 41/234 (17%), Positives = 67/234 (28%), Gaps = 70/234 (29%)

Query: 5   LLKHQLVATGLSGGFVL--------VTKMGFSCHTQPQT--KRIEERLSALGNCIACNDH 54
           LLK +     L    VL              SC     T  K++ + LSA        DH
Sbjct: 237 LLKSKPYENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 55  VALAHTDLDRETEEIIADVLGVEVF---RQTIAGNILVGSYCSFSNRGGLVH----PH-- 105
            ++  T    E + ++   L        R+ +  N    S  + S R GL       H  
Sbjct: 294 HSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 106 ---------TSIEDLD--ELSTLLQ--------VPLVAGTVNRGSEVIGAGLTVNDWTAF 146
                    +S+  L+  E   +            +    +     +I        W   
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL----SLI--------WFDV 399

Query: 147 CGSDT--TATEL---SVIESVFK----------LREAQPNAIVDEMRKSLIDSY 185
             SD      +L   S++E   K          L           + +S++D Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	99.97
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	99.97
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	99.96

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=2.7e-53  Score=364.28  Aligned_cols=173  Identities=60%  Similarity=0.982  Sum_probs=148.2

Q ss_pred             hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868           12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT   82 (186)
Q Consensus        12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt   82 (186)
                      .+||++|++ +++...         +||++++|.++++|+||+|||++|||++|+|||++++++.+.|+|+|||||++++
T Consensus        66 ~~GN~nGll-vp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~t  144 (248)
T 4a18_J           66 TCGNKNGLL-VPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTT  144 (248)
T ss_dssp             CEEETTEEE-ECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECC
T ss_pred             EEecCCeEE-eCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEE
Confidence            467778877 666554         7889999999999999999999999999999999999999999999999999999


Q ss_pred             eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHh
Q 029868           83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV  162 (186)
Q Consensus        83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~Iedv  162 (186)
                      |||+++||+++++||+|+||||.++++|+++|+++|+|++.+||+|+|.++||+|++|||+||+|||+||++|+++|+++
T Consensus       145 Iags~lVGs~~v~Nn~G~LVhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~  224 (248)
T 4a18_J          145 IANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENI  224 (248)
T ss_dssp             BTTBSCHHHHEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHH
T ss_pred             cCCcceeEEEEEEeCCeEEECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCchhHHHHHHHhhhhc
Q 029868          163 FKLREAQPNAIVDEMRKSLIDSY  185 (186)
Q Consensus       163 L~V~~~~~~~~~~~~~~~~~~~~  185 (186)
                      ||+.+++|..+.++||+++||++
T Consensus       225 l~v~~~~~~~~~~~~~~~~~~~~  247 (248)
T 4a18_J          225 FKLNEMKDENMDNEMRKDFVMNL  247 (248)
T ss_dssp             TTCC-------------------
T ss_pred             hCCCCCCchHHHHHHHHHHHhhc
Confidence            99999999999899999999986

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=2.1e-48  Score=329.94  Aligned_cols=153  Identities=67%  Similarity=1.017  Sum_probs=147.1

Q ss_pred             hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868           12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT   82 (186)
Q Consensus        12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt   82 (186)
                      .+||++|++ +++...         +||++++|.++++|++++|||++|||++|+|||++++++.+.|+|+|||||++++
T Consensus        63 ~~gN~nGll-vp~~~~d~El~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~t  141 (224)
T 1g62_A           63 TAGNRRGLL-VPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQT  141 (224)
T ss_dssp             CEECSSEEE-EETTCCHHHHHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECC
T ss_pred             EEecCceEE-cCCcCCHHHHHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEE
Confidence            568888888 666554         7899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHh
Q 029868           83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV  162 (186)
Q Consensus        83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~Iedv  162 (186)
                      |||+++||+++++||+|+||||+++++|+++|+++|+|++.+||+|+|.++||++++|||||++|||+||++|+++|+++
T Consensus       142 Iag~~lVGs~~v~nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~  221 (224)
T 1g62_A          142 ISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESI  221 (224)
T ss_dssp             BTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHH
T ss_pred             ecCcceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC
Q 029868          163 FKL  165 (186)
Q Consensus       163 L~V  165 (186)
                      |++
T Consensus       222 f~v  224 (224)
T 1g62_A          222 FRL  224 (224)
T ss_dssp             TTC
T ss_pred             hCc
Confidence            986

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.8e-42  Score=293.25  Aligned_cols=161  Identities=35%  Similarity=0.494  Sum_probs=154.0

Q ss_pred             hhhhhhccCcceEEEecCcccccCCC-------------CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhh
Q 029868            7 KHQLVATGLSGGFVLVTKMGFSCHTQ-------------PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV   73 (186)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~   73 (186)
                      +-.|.-|+++|.|.++|+.+..+|..             ++|.++++|++++||+++|||++|+|||+++++.++.|+|+
T Consensus        48 ~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~~~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~  127 (222)
T 4adx_I           48 KVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDV  127 (222)
T ss_pred             EEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHhcCCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHh
Confidence            44577899999999999999988876             56888999999999999999999999999999999999999


Q ss_pred             hCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCH
Q 029868           74 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA  153 (186)
Q Consensus        74 LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~  153 (186)
                      |||+|.+.++++.+++|+++++||+|+||||+++++|+|+|+++|+|++.+||+|+|.++||++++|||||++|||+||+
T Consensus       128 L~VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~  207 (222)
T 4adx_I          128 LEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTG  207 (222)
T ss_pred             hCccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q 029868          154 TELSVIESVFKLRE  167 (186)
Q Consensus       154 ~Ei~~IedvL~V~~  167 (186)
                      +|+++|+++||+.+
T Consensus       208 ~El~~ie~~f~~~~  221 (222)
T 4adx_I          208 PELARIEEALGFLE  221 (222)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999999999753

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=2.3e-40  Score=281.34  Aligned_cols=157  Identities=34%  Similarity=0.461  Sum_probs=144.3

Q ss_pred             hhhhhccCcceEEEecCccccc-------------------CCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHH
Q 029868            8 HQLVATGLSGGFVLVTKMGFSC-------------------HTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEE   68 (186)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~l-------------------~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~   68 (186)
                      -+|.-|+++|.|.++|+.+.++                   |++++|.++++|++++||+++|||++|+|||++ ++..+
T Consensus        51 ~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~  129 (228)
T 1g61_A           51 TNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKK  129 (228)
T ss_dssp             CCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHH
T ss_pred             EEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHH
Confidence            3455566666666666655533                   566779999999999999999999999999999 99999


Q ss_pred             HHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcc-eeEEEeecCccceeeEEEEcCceEEE
Q 029868           69 IIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP-LVAGTVNRGSEVIGAGLTVNDWTAFC  147 (186)
Q Consensus        69 ~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~-v~~gtvn~g~~~VGs~ivaNd~GalV  147 (186)
                      .|+|+|+|++.+.+|++..++|+.++.+|+|+||||+++++|+|+|+++|+|+ +.+||+|+|.++|||+++|||||++|
T Consensus       130 ~i~d~L~veV~~~~i~~~~tvg~n~v~tN~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lv  209 (228)
T 1g61_A          130 DIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVV  209 (228)
T ss_dssp             HHHHHHCSEEEECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEE
T ss_pred             HHHHhcCCceEEEEeCCccceeeEEEEecceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhhCC
Q 029868          148 GSDTTATELSVIESVFKL  165 (186)
Q Consensus       148 ~p~tt~~Ei~~IedvL~V  165 (186)
                      ||+||++|+++|+++||+
T Consensus       210 g~~TT~~El~~Ie~~f~v  227 (228)
T 1g61_A          210 GGDTTGPELLIIEDALGL  227 (228)
T ss_dssp             ETTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHhcc
Confidence            999999999999999997

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=5.9e-32  Score=228.86  Aligned_cols=159  Identities=17%  Similarity=0.210  Sum_probs=147.5

Q ss_pred             hhhhhhhccCcceEEEecCcccccCCC------------CcEEEec---cCCCceeeEEEeeCcEEEEecCCChhHHHHH
Q 029868            6 LKHQLVATGLSGGFVLVTKMGFSCHTQ------------PQTKRIE---ERLSALGNCIACNDHVALAHTDLDRETEEII   70 (186)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~v~~~~---~~~~aiGn~i~aND~~alVpp~l~~~~~~~I   70 (186)
                      .|-|+.-+.++|.|...++--.++|.+            +.+.+++   .+.+.+|.|+++||+++++||..+++..+.|
T Consensus         3 ~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l   82 (222)
T 4adx_I            3 RRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDAL   82 (222)
T ss_pred             EEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHH
Confidence            467888999999999888888877776            3343333   6899999999999999999999999999999


Q ss_pred             HhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCC
Q 029868           71 ADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSD  150 (186)
Q Consensus        71 ~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~  150 (186)
                      ++ ++|++.+++ ++++.+|.++++||+|+||||+++++|++.|+|+|+|++.++++ ++.+++||.++|||+||+|||+
T Consensus        83 ~~-~~v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i-~~~~avGn~~v~nn~G~lVhP~  159 (222)
T 4adx_I           83 AA-AGVEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALLNPQ  159 (222)
T ss_pred             Hh-cCCeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEec-CCccceEEEEEEeCceEEECCC
Confidence            99 599999999 99999999999999999999999999999999999999999998 8899999999999999999999


Q ss_pred             CCHHHHHHHHHhhCCCC
Q 029868          151 TTATELSVIESVFKLRE  167 (186)
Q Consensus       151 tt~~Ei~~IedvL~V~~  167 (186)
                      +|++|++.|+++|+||.
T Consensus       160 ~s~ee~~~i~~~L~V~v  176 (222)
T 4adx_I          160 ASSEEIGIIEDTLGVEA  176 (222)
T ss_pred             CCHHHHHHHHHHhCCCE
Confidence            99999999999999997

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=99.97  E-value=4.4e-32  Score=232.84  Aligned_cols=128  Identities=16%  Similarity=0.213  Sum_probs=124.4

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL  117 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~  117 (186)
                      ++.++||+|+++||+||++||+.++++.+.++++|+  +|+++|+|+||++||+|++||+||+|||+.++|+|++.|++.
T Consensus        11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~   90 (248)
T 4a18_J           11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS   90 (248)
T ss_dssp             TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence            688999999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868          118 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  167 (186)
Q Consensus       118 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~  167 (186)
                      |+-.+...++..+.+++|+.++|||++|+|||+++++..+.|+|+|||++
T Consensus        91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV  140 (248)
T 4a18_J           91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEV  140 (248)
T ss_dssp             SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEE
T ss_pred             CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcE
Confidence            87666679999999999999999999999999999999999999999997

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=99.97  E-value=7.8e-32  Score=228.43  Aligned_cols=128  Identities=20%  Similarity=0.274  Sum_probs=124.8

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL  117 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~  117 (186)
                      ++.++||+|+++||+||++||+.++++.+.++++|+  +|+++|+|+||+++|+|++||+||+|||+.++|+|++.|++.
T Consensus         8 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~   87 (224)
T 1g62_A            8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS   87 (224)
T ss_dssp             TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhh
Confidence            688999999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868          118 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  167 (186)
Q Consensus       118 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~  167 (186)
                      |+..+...+++.+.+++|+.++|||++|+|||+++++..+.|+|+|||++
T Consensus        88 l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV  137 (224)
T 1g62_A           88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEV  137 (224)
T ss_dssp             SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEE
T ss_pred             CCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcE
Confidence            87777779999999999999999999999999999999999999999997

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=99.96  E-value=9.5e-30  Score=216.11  Aligned_cols=127  Identities=20%  Similarity=0.292  Sum_probs=119.5

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcC
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQ  119 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~  119 (186)
                      ++.++||+|+++||+||++||+.++++.+.++++|++|+++++|+|++++|+|+++|++|+||||.++|+|++.|++.|+
T Consensus        10 ~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~   89 (228)
T 1g61_A           10 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK   89 (228)
T ss_dssp             TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999984


Q ss_pred             ---cceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868          120 ---VPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  167 (186)
Q Consensus       120 ---V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~  167 (186)
                         ..+....+..+.+++|+.+++||+|++|||++ ++..+.|+|+|++++
T Consensus        90 ~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV  139 (228)
T 1g61_A           90 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEV  139 (228)
T ss_dssp             HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEE
T ss_pred             ccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCce
Confidence               33444667889999999999999999999999 888899999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	3e-68
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	7e-08
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	2e-64
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	8e-08

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  205 bits (523), Expect = 3e-68
 Identities = 99/130 (76%), Positives = 116/130 (89%)

Query: 36  KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
           +R+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS 
Sbjct: 95  QRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSL 154

Query: 96  SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 155
           SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GAG+ VND+ A  G DTTA E
Sbjct: 155 SNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPE 214

Query: 156 LSVIESVFKL 165
           LSVIES+F+L
Sbjct: 215 LSVIESIFRL 224

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 2/122 (1%)

Query: 45  LGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLV 102
           +G      +   L                LG  + +   TIAG  ++G   + + RG LV
Sbjct: 13  IGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLV 72

Query: 103 HPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV 162
              T+ ++L  L   L   +    V      +G  +  ND+ A    D       +I  V
Sbjct: 73  PTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDV 132

Query: 163 FK 164
             
Sbjct: 133 LG 134

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  195 bits (498), Expect = 2e-64
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 36  KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 95
           + I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   TIA    VGS    
Sbjct: 96  EIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVV 154

Query: 96  SNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTTAT 154
           +N+G L HP    ++L+ L +L +V  +  GT N+G+  +GA +  N   A  G DTT  
Sbjct: 155 TNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGP 214

Query: 155 ELSVIESVFKL 165
           EL +IE    L
Sbjct: 215 ELLIIEDALGL 225

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 45  LGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHP 104
           +G      + + L    LD++    +++VL  +  +  I G+ LVGS    +  G L+  
Sbjct: 13  IGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPK 72

Query: 105 HTSIEDLDELSTLLQVPLVAGTVNRGSEV---IGAGLTVNDWTAFCGSDTTATELSVIES 161
               E+LD +   L+   +   V         +G  +  ND  A    +        IE 
Sbjct: 73  IVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPE-LKDFKKDIED 131

Query: 162 VFKL 165
              +
Sbjct: 132 SLNV 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	100.0
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	99.97

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-46  Score=316.12  Aligned_cols=153  Identities=67%  Similarity=1.017  Sum_probs=146.5

Q ss_pred             hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868           12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT   82 (186)
Q Consensus        12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt   82 (186)
                      ++||++|++ +++...         ++|++++|.++++|+||+||.|+|||++|++||++++++.+.|+|+|||||++++
T Consensus        63 ~~GN~nGll-vp~~~td~El~~L~~~l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~t  141 (224)
T d1g62a_          63 TAGNRRGLL-VPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQT  141 (224)
T ss_dssp             CEECSSEEE-EETTCCHHHHHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECC
T ss_pred             eecccCeEE-eCCcCCHHHHHHHHhhCCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEE
Confidence            467777777 666554         8889999999999999999999999999999999999999999999999999999


Q ss_pred             eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHh
Q 029868           83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV  162 (186)
Q Consensus        83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~Iedv  162 (186)
                      |||.++|||++++||+|+|+||+++++|+++|+++|+|++..||+|+|.++||+|++|||+|++||.+||++|+.+|+++
T Consensus       142 iag~~~VGs~~v~tn~G~LvhP~~t~~E~~~l~~~l~V~~~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~~  221 (224)
T d1g62a_         142 ISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESI  221 (224)
T ss_dssp             BTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHH
T ss_pred             ecCccceeeEEEEcCCceeecCCCCHHHHHHHHHHhCCCcccceeeCCCCCceeEEEEcCceEEEcCCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC
Q 029868          163 FKL  165 (186)
Q Consensus       163 L~V  165 (186)
                      ||+
T Consensus       222 ~~l  224 (224)
T d1g62a_         222 FRL  224 (224)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            985

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.2e-45  Score=307.75  Aligned_cols=152  Identities=34%  Similarity=0.428  Sum_probs=139.9

Q ss_pred             hccCcceEEEecCccc---------ccCCC---CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeE
Q 029868           12 ATGLSGGFVLVTKMGF---------SCHTQ---PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVF   79 (186)
Q Consensus        12 ~~~~~~~~~~~~~~~~---------~l~~~---~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi   79 (186)
                      ++||++|++ +++...         +||+.   ++|.++++|+||+||.|+|||++|+|||++ +++.+.|+|+|||||+
T Consensus        61 ~~GN~nGll-vp~~~~d~El~~l~~~l~~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l-~e~~e~I~dvL~Vev~  138 (225)
T d1g61a_          61 SVANKYGLL-LPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVE  138 (225)
T ss_dssp             CEECSSEEE-EETTCCHHHHHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEE
T ss_pred             EeccCCeEE-eCCcCCHHHHHHHHhhcccccCCceEEEeCCcccccccEEEEcCcceEecccc-chHHHHHHHhhCceEE
Confidence            356666666 555544         56654   889999999999999999999999999999 5789999999999999


Q ss_pred             EEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcc-eeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHH
Q 029868           80 RQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP-LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSV  158 (186)
Q Consensus        80 ~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~-v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~  158 (186)
                      +.+|||..+|||++++||+|+|+||+++++|+++|+++|+|+ +..||+|+|.++||+|++|||+|++||.+||++|+.+
T Consensus       139 r~~iag~~~VGs~~v~tn~G~LvhP~~s~~E~~~l~~~l~V~~v~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~  218 (225)
T d1g61a_         139 IGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLI  218 (225)
T ss_dssp             ECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHH
T ss_pred             EEEeCCcccceeEEEEeccceEECCCCCHHHHHHHHHHhCCCcccccceeCCCCCceeEEEEcCceEEEcCCCchHHHHH
Confidence            999999999999999999999999999999999999999999 5689999999999999999999999999999999999


Q ss_pred             HHHhhCC
Q 029868          159 IESVFKL  165 (186)
Q Consensus       159 IedvL~V  165 (186)
                      ||++||+
T Consensus       219 Ie~a~~l  225 (225)
T d1g61a_         219 IEDALGL  225 (225)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhCC
Confidence            9999985

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=236.21  Aligned_cols=128  Identities=20%  Similarity=0.274  Sum_probs=124.3

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL  117 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~  117 (186)
                      ++.++||+|+++||+||++||+.+++..+.++++|+  +|+++|+|+||+++|+|++||+||++||+.++|+|++.|++.
T Consensus         8 ~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~El~~L~~~   87 (224)
T d1g62a_           8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS   87 (224)
T ss_dssp             TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHHHHHHHhh
Confidence            688999999999999999999999999999999998  999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868          118 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  167 (186)
Q Consensus       118 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~  167 (186)
                      ++-.+...++..+.+++||.++|||+||+|||+++.+..+.|+|+|||++
T Consensus        88 l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev  137 (224)
T d1g62a_          88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEV  137 (224)
T ss_dssp             SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEE
T ss_pred             CCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceE
Confidence            97666679999999999999999999999999999999999999999997

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=7.1e-33  Score=232.82  Aligned_cols=127  Identities=20%  Similarity=0.284  Sum_probs=119.4

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcC
Q 029868           40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQ  119 (186)
Q Consensus        40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~  119 (186)
                      ++.++||+|+++||+||++||+++++..+.|+++|++|+++|+|+||+++|+|++||+||++||+.++|+|++.|+++|+
T Consensus         8 ~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~   87 (225)
T d1g61a_           8 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK   87 (225)
T ss_dssp             TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHHHHHHHhhcc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             c---ceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868          120 V---PLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  167 (186)
Q Consensus       120 V---~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~  167 (186)
                      -   ++...++..+.+++||.++|||+||+|||+++ ++.+.|+|+|||++
T Consensus        88 ~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l~-e~~e~I~dvL~Vev  137 (225)
T d1g61a_          88 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPELK-DFKKDIEDSLNVEV  137 (225)
T ss_dssp             HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGG-GGHHHHHHHHCSEE
T ss_pred             cccCCceEEEeCCcccccccEEEEcCcceEeccccc-hHHHHHHHhhCceE
Confidence            2   23448899999999999999999999999996 56799999999997