Citrus Sinensis ID: 029873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MADSSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHccccccHHccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcEEEEccccHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
madsssnqthskehnyrryhpyqqfdvpiqnlynlptspeflfheeSLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSveglrqaepsdslkLRVNRVLnsggqvgrrfgnSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI
Flexible Loop (DISEMBL)
madsssnqthskehnyrryHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQaepsdslklrVNRVLNsggqvgrrfgnSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI
Low Complexity Region (SEG)
MADSSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSaavagaiggitaaaavagKQAVKRYVPI
Disordered region (IsUnstruct)
***************YRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEG**********KLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAV******
Disordered Region (DISOPRED)
**********************QQFDVPIQ***********************WGENLQYYTGSGYLSGAVLGAIKGSVEGL*******************GGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI
Disordered Region (DISEMBL)
*************HNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI
Disordered Region (DISPRO)
*****************RYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADSSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9LNQ1	187	Mitochondrial import inne	yes	no	0.951	0.946	0.603	7e-52
Q9S837	188	Mitochondrial import inne	no	no	1.0	0.989	0.595	8e-52
Q38820	188	Mitochondrial import inne	no	no	0.951	0.941	0.588	1e-49
Q9USM7	210	Mitochondrial import inne	yes	no	0.913	0.809	0.308	3e-18
P32897	222	Mitochondrial import inne	yes	no	0.865	0.725	0.309	3e-12
Q6INU6	209	Mitochondrial import inne	N/A	no	0.795	0.708	0.294	2e-08
Q9WTQ8	209	Mitochondrial import inne	yes	no	0.795	0.708	0.307	3e-08
O14925	209	Mitochondrial import inne	yes	no	0.752	0.669	0.312	3e-08
O35093	209	Mitochondrial import inne	yes	no	0.629	0.559	0.336	3e-08
Q5XH94	209	Mitochondrial import inne	yes	no	0.629	0.559	0.336	3e-08

>sp|Q9LNQ1|TI231_ARATH Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1

 Score =  202 bits (515), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 134/179 (74%), Gaps = 2/179 (1%)

Query: 10  HSKEHNYRRYHPYQQFDVPI--QNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYL 67
           H  + N R YHPYQ + VPI  Q LY LPTSPEFLF EESL  RRSWGENL +YTG+GYL
Sbjct: 9   HESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTGYL 68

Query: 68  SGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGL 127
           +G+V GA  G   G++  E  D+ KL++NR+LNS GQ GR +GN +G++GLI+AG+ESG+
Sbjct: 69  AGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGV 128

Query: 128 IYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI 186
           + + D DD+  +V AGLGTGA++RAA G+RSAAVAGA GGI A A VAGKQ  KRY  I
Sbjct: 129 VAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAHI 187

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S837|TI233_ARATH Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana GN=TIM23-3 PE=2 SV=1

 Score =  202 bits (515), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 143/188 (76%), Gaps = 2/188 (1%)

Query: 1   MADSSSNQT-HSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQ 59
           MAD  ++ T H ++  YR+Y+PYQQ ++P + LY LPTSPEFLF EE+   R +WGENL 
Sbjct: 1   MADPMNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLT 60

Query: 60  YYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLI 119
           ++TG GY +G+VLGA KG++ G+R AE  +SLK+R NR+LNSGG V RR GN LG +GL+
Sbjct: 61  FFTGWGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLM 120

Query: 120 FAGMESGLIYLRDSDD-LLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQ 178
           FA MESG+ Y+RD DD  L TV AGL TG +YRAA G RSA VAGA+GG+ A AAVAG++
Sbjct: 121 FAAMESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRR 180

Query: 179 AVKRYVPI 186
            VKR+VPI
Sbjct: 181 IVKRFVPI 188

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38820|TI232_ARATH Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana GN=TIM23-2 PE=1 SV=1

 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 136/180 (75%), Gaps = 3/180 (1%)

Query: 10  HSKEHNYRRYHPYQQFDVPI---QNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGY 66
           H  + N R Y+PYQ ++VPI   Q LY LPTSPEFLF EE+L  RRSWGENL +YTG+ Y
Sbjct: 9   HGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAY 68

Query: 67  LSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESG 126
           L G+V GA  G + G++  E  D+ KL++NR+LNS GQ GR +GN +G++GL++AG+ESG
Sbjct: 69  LGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESG 128

Query: 127 LIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI 186
           ++   D DD+  +V AGLGTGA+ RAA G+RSAAVAGA+GG+ A A VAGKQ VKRYVPI
Sbjct: 129 IVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9USM7|TIM23_SCHPO Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 18/188 (9%)

Query: 4   SSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNS---------RRSW 54
           ++S+     E +  + HP    D P+  L         L  E++L++          R W
Sbjct: 29  TASDILSGSEFDPAKLHPLADLDKPLDYL---------LIEEDALSTLPGDSMAIPSRGW 79

Query: 55  GENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLG 114
            ++L Y TG+ YLSG  +G + G  EG+++ +   S +LR+N +LN   + G   GNSLG
Sbjct: 80  QDDLCYGTGTSYLSGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLG 139

Query: 115 VLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAV 174
           VL L++ G+ S + Y R      N+VAAG  TGA+Y++  GLR+ A++ ++    A    
Sbjct: 140 VLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKSTRGLRAMAISSSLVATAAGIWT 199

Query: 175 AGKQAVKR 182
             K++  +
Sbjct: 200 LAKRSFTK 207

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32897|TIM23_YEAST Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM23 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)

Query: 18  RYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKG 77
           R HP    D  ++ L         L   + L   R W ++L Y TG+ YL G  +G   G
Sbjct: 57  RLHPLAGLDKGVEYLDLEEEQLSSLEGSQGLIPSRGWTDDLCYGTGAVYLLGLGIGGFSG 116

Query: 78  SVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLL 137
            ++GL+   P+   KL++N VLN   + G   GN+ G+L L +  + S +  LR   D  
Sbjct: 117 MMQGLQNIPPNSPGKLQLNTVLNHITKRGPFLGNNAGILALSYNIINSTIDALRGKHDTA 176

Query: 138 NTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKR 182
            ++ AG  TGA+++++ GL+    + A+     AAA A   +VK+
Sbjct: 177 GSIGAGALTGALFKSSKGLKPMGYSSAM----VAAACAVWCSVKK 217

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6INU6|TIM23_XENLA Mitochondrial import inner membrane translocase subunit Tim23 OS=Xenopus laevis GN=timm23 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 21  PYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYT-GSGYLSGAVLGAIKGSV 79
           PY   D     +Y +  + EF+    +  +R  +   L ++T G   +SGA  GA+ G  
Sbjct: 44  PYLNVD----PMYLVQDTDEFILPTGANKTRGRF--ELAFFTIGGCCISGAAFGALNGLK 97

Query: 80  EGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNT 139
            G ++ +     K +  ++LN   + G  + N+LG L L+++     +   R ++D LNT
Sbjct: 98  LGFKETQNMPWSKPKNVQILNMVTRQGALWANTLGSLALLYSAFGVIVEKTRGAEDDLNT 157

Query: 140 VAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVA 175
           +AAG  TG +Y++ GGLR  A  G + G+  A+  A
Sbjct: 158 IAAGTMTGMLYKSTGGLRGVA-RGGLAGLALASTFA 192

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane (By similarity). Plays an essential role in early embryonic development.

Xenopus laevis (taxid: 8355)

>sp|Q9WTQ8|TIM23_MOUSE Mitochondrial import inner membrane translocase subunit Tim23 OS=Mus musculus GN=Timm23 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 21  PYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYT-GSGYLSGAVLGAIKGSV 79
           PY   D      Y +  + EF+    +  +R  +   L ++T G   ++GA  GA+ G  
Sbjct: 44  PYLNVDPR----YLVQDTDEFILPTGANKTRGRF--ELAFFTIGGCCMTGAAFGAMNGLR 97

Query: 80  EGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNT 139
            GL++ +     K R  ++LN   + G  + N+LG L L+++     +   R ++D LNT
Sbjct: 98  LGLKETQSMAWSKPRNVQILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNT 157

Query: 140 VAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVA 175
           VAAG  TG +Y+  GGLR  A  G + G+T  +  A
Sbjct: 158 VAAGTMTGMLYKCTGGLRGIA-RGGLAGLTLTSLYA 192

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Mus musculus (taxid: 10090)

>sp|O14925|TIM23_HUMAN Mitochondrial import inner membrane translocase subunit Tim23 OS=Homo sapiens GN=TIMM23 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 21  PYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYT-GSGYLSGAVLGAIKGSV 79
           PY   D      Y +  + EF+    +  +R  +   L ++T G   ++GA  GA+ G  
Sbjct: 44  PYLNVDPR----YLVQDTDEFILPTGANKTRGRF--ELAFFTIGGCCMTGAAFGAMNGLR 97

Query: 80  EGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNT 139
            GL++ +     K R  ++LN   + G  + N+LG L L+++     +   R ++D LNT
Sbjct: 98  LGLKETQNMAWSKPRNVQILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNT 157

Query: 140 VAAGLGTGAIYRAAGGLRSAAVAGAIG 166
           VAAG  TG +Y+  GGLR  A  G  G
Sbjct: 158 VAAGTMTGMLYKCTGGLRGIARGGLTG 184

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|O35093|TIM23_RAT Mitochondrial import inner membrane translocase subunit Tim23 OS=Rattus norvegicus GN=Timm23 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 58  LQYYT-GSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVL 116
           L ++T G   ++GA  GA+ G   GL++ +     K R  ++LN   + G  + N+LG L
Sbjct: 75  LAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWSKPRNVQILNMVTRQGALWANTLGSL 134

Query: 117 GLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVA 175
            L+++     +   R ++D  NTVAAG  TG +Y+  GGLR  A  G + G+T  +  A
Sbjct: 135 ALLYSAFGVIIEKTRGAEDDFNTVAAGTMTGMLYKCTGGLRGIA-RGGLAGLTLTSVYA 192

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q5XH94|TIM23_XENTR Mitochondrial import inner membrane translocase subunit Tim23 OS=Xenopus tropicalis GN=timm23 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 58  LQYYT-GSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVL 116
           L ++T G   +SGA  GA+ G   G ++ +     K +  ++LN   + G  + N+LG L
Sbjct: 75  LAFFTIGGCCMSGAAFGAVNGLRLGFKETQNMAWSKPKNVQILNMVTRQGALWANTLGSL 134

Query: 117 GLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIG-GITAAAAV 174
            L+++     +   R ++D LNT+AAG  TG +Y++ GGLR  A  G  G  +T+A A+
Sbjct: 135 ALLYSAFGVIIEKTRGAEDDLNTIAAGTMTGMLYKSTGGLRGVARGGLAGLALTSAFAL 193

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane (By similarity). Plays an essential role in early embryonic development.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
357441461	185	Mitochondrial import inner membrane tran	0.983	0.989	0.696	1e-68
224123386	180	predicted protein [Populus trichocarpa]	0.935	0.966	0.782	4e-65
225430504	182	PREDICTED: mitochondrial import inner me	0.978	1.0	0.720	1e-64
224131302	180	predicted protein [Populus trichocarpa]	0.935	0.966	0.782	5e-64
225442227	183	PREDICTED: mitochondrial import inner me	0.956	0.972	0.629	2e-63
356535161	184	PREDICTED: mitochondrial import inner me	0.989	1.0	0.704	3e-62
147784566	450	hypothetical protein VITISV_008665 [Viti	0.838	0.346	0.712	9e-61
356576688	184	PREDICTED: mitochondrial import inner me	0.989	1.0	0.709	2e-60
115450293	194	Os03g0114900 [Oryza sativa Japonica Grou	0.978	0.938	0.626	1e-59
116784156	189	unknown [Picea sitchensis]	0.983	0.968	0.613	3e-57

>gi|357441461|ref|XP_003591008.1| Mitochondrial import inner membrane translocase subunit tim23 [Medicago truncatula] gi|355480056|gb|AES61259.1| Mitochondrial import inner membrane translocase subunit tim23 [Medicago truncatula]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/188 (69%), Positives = 156/188 (82%), Gaps = 5/188 (2%)

Query: 1   MADSSSNQTHSKEH-NYRRYHPYQQFD-VPIQNLYNLPTSPEFLFHEESLNSRRSWGENL 58
           MADSS+N    K+H N R YHPYQ  + VPI  LYNLPTSPE LF E+ +   RSWGEN+
Sbjct: 1   MADSSTN---PKDHQNTRLYHPYQHLNNVPIDKLYNLPTSPEHLFQEDIIRKHRSWGENV 57

Query: 59  QYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGL 118
           QYYTG+GYLSGA++G  +G+V+GLR+AE  +S+KLRVNRVLNSGGQ GRR GNSLGVLGL
Sbjct: 58  QYYTGTGYLSGAIIGGARGTVQGLREAEAGESVKLRVNRVLNSGGQGGRRLGNSLGVLGL 117

Query: 119 IFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQ 178
           IFAG+ESG+ Y RD+DDL+N+  AGLGTGAIY+AA G RSAA+AGA+GGI AA AVAG+Q
Sbjct: 118 IFAGLESGMTYFRDTDDLVNSAVAGLGTGAIYKAAAGPRSAAIAGAVGGIVAAVAVAGRQ 177

Query: 179 AVKRYVPI 186
           A+KRYVPI
Sbjct: 178 ALKRYVPI 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123386|ref|XP_002319066.1| predicted protein [Populus trichocarpa] gi|222857442|gb|EEE94989.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/175 (78%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 13  EHNYRRYHPYQQ-FDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAV 71
           +H YR+YHPYQ  ++VP QNLYNLPTSPEFLFHEESL  RRSW ENLQYYTG+GYLSGA+
Sbjct: 6   DHKYRKYHPYQDLYNVPAQNLYNLPTSPEFLFHEESLTQRRSWSENLQYYTGTGYLSGAI 65

Query: 72  LGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLR 131
           LG  KGS+EG+R AEP +SLKLRVNRVLNSGG  GR+FGN+LGVLGL+FAG+ESGLI+ R
Sbjct: 66  LGGAKGSIEGIRAAEPGESLKLRVNRVLNSGGHAGRKFGNNLGVLGLMFAGIESGLIHWR 125

Query: 132 DSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI 186
           D+DDL+NTV AGL TGAIYRAA G RSAA+AGAIGGI AA AVA KQAVKRYVPI
Sbjct: 126 DTDDLVNTVLAGLSTGAIYRAAKGPRSAAIAGAIGGIAAAGAVAAKQAVKRYVPI 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430504|ref|XP_002285554.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim23 [Vitis vinifera] gi|296082145|emb|CBI21150.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 155/186 (83%), Gaps = 4/186 (2%)

Query: 1   MADSSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQY 60
           MAD S++         R YHPYQ   VPIQNLYNLPTSPE+LF EESL+ RRSW ENLQY
Sbjct: 1   MADQSTDSNRKT----RVYHPYQDLQVPIQNLYNLPTSPEYLFDEESLHQRRSWSENLQY 56

Query: 61  YTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIF 120
           YTGSGYLSGA++G  KGS+EG+R AE  D+LKLRVNRVLNSGGQ GRRFGNS+GVLGLIF
Sbjct: 57  YTGSGYLSGAIIGGAKGSIEGIRAAEAGDTLKLRVNRVLNSGGQTGRRFGNSMGVLGLIF 116

Query: 121 AGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAV 180
           +G+ESG+I+ RD+DD+LN+V AGLGTGA+YRAA G RSA +AGAIGG+ A AAVAGKQ +
Sbjct: 117 SGLESGMIHWRDTDDMLNSVFAGLGTGALYRAAAGPRSAVIAGAIGGLAAGAAVAGKQVM 176

Query: 181 KRYVPI 186
           KRYVPI
Sbjct: 177 KRYVPI 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131302|ref|XP_002328505.1| predicted protein [Populus trichocarpa] gi|222838220|gb|EEE76585.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 137/175 (78%), Positives = 157/175 (89%), Gaps = 1/175 (0%)

Query: 13  EHNYRRYHPYQQ-FDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAV 71
           +H YR+YHPYQ  ++VP QNLY LPTSPEFLFHEESL+ RRSW E+LQYYTG+GYL+GA+
Sbjct: 6   DHKYRKYHPYQDLYNVPAQNLYKLPTSPEFLFHEESLHQRRSWSESLQYYTGTGYLAGAI 65

Query: 72  LGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLR 131
           LG  KGSVEG+R AEP ++LKLRVNRVLNSGG +GRRFGN+LGVLGL+FAG+ESGLI+ R
Sbjct: 66  LGGAKGSVEGIRAAEPGETLKLRVNRVLNSGGHMGRRFGNNLGVLGLMFAGIESGLIHWR 125

Query: 132 DSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI 186
           D+DDL+NTV AGL TGAIYRAA G RSAA+AGAIGGI AAAAVAGKQAVKRYVPI
Sbjct: 126 DTDDLVNTVLAGLSTGAIYRAAKGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442227|ref|XP_002278010.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim23-like [Vitis vinifera]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 144/178 (80%)

Query: 9   THSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLS 68
           + +   N R Y+PYQ   +PIQN+Y LPTSPEFLF EES+  RRSWGENL YYTG GYLS
Sbjct: 6   SQNDNDNRRLYNPYQDLQIPIQNIYKLPTSPEFLFQEESVAQRRSWGENLTYYTGIGYLS 65

Query: 69  GAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLI 128
           GA+ GA KG V+G++ +EP D++KLR+NR+LN+ G  GR+FGN  GV+GL++AG+ESG++
Sbjct: 66  GALSGAAKGLVDGVKASEPGDTVKLRINRILNASGHAGRKFGNRAGVIGLMYAGLESGIV 125

Query: 129 YLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVPI 186
            +RD+DD++N+V AGLGTGA+YRAA G+RSAAVAGAIGG+   AAV  KQ +KRYVPI
Sbjct: 126 AVRDTDDVVNSVVAGLGTGALYRAAAGVRSAAVAGAIGGVVVGAAVTAKQVLKRYVPI 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535161|ref|XP_003536117.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim23-like [Glycine max]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 131/186 (70%), Positives = 156/186 (83%), Gaps = 2/186 (1%)

Query: 1   MADSSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQY 60
           MADSSSN      HN R YHPYQ  +VPIQ LYNLPT+PE LF EE+  + RSWG+NLQY
Sbjct: 1   MADSSSNS--KDHHNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGDNLQY 58

Query: 61  YTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIF 120
           YTGSGYL+GA++GA +G+V+GLR+AE  DSLK+R+NRVLNSGG  GRR GNSLGV+GLIF
Sbjct: 59  YTGSGYLAGALIGAARGTVQGLREAESGDSLKIRLNRVLNSGGHAGRRLGNSLGVVGLIF 118

Query: 121 AGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAV 180
           AG+ESG+ YLR +DDL+N+  AGLGTG ++RAA G RSAA+AGAIGGI AAAAV+GKQA+
Sbjct: 119 AGLESGMTYLRGTDDLVNSAVAGLGTGTLFRAAAGPRSAAIAGAIGGIAAAAAVSGKQAL 178

Query: 181 KRYVPI 186
           KRYVPI
Sbjct: 179 KRYVPI 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784566|emb|CAN70489.1| hypothetical protein VITISV_008665 [Vitis vinifera]

 Score =  238 bits (607), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 132/160 (82%), Gaps = 4/160 (2%)

Query: 1   MADSSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQY 60
           MAD S++         R YHPYQ   VPIQNLYNLPTSPE+LF EESL+ RRSW ENLQY
Sbjct: 1   MADQSTDSNRKT----RVYHPYQDLQVPIQNLYNLPTSPEYLFDEESLHQRRSWSENLQY 56

Query: 61  YTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIF 120
           YTGSGYLSGA++G  KGS+EG+R AE  D+LKLRVNRVLNSGGQ GRRFGNS+GVLGLIF
Sbjct: 57  YTGSGYLSGAIIGGAKGSIEGIRAAEAGDTLKLRVNRVLNSGGQTGRRFGNSMGVLGLIF 116

Query: 121 AGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAA 160
           +G+ESG+I+ RD+DD+LN+V AGLGTGA+YRAA G RSA 
Sbjct: 117 SGLESGMIHWRDTDDMLNSVFAGLGTGALYRAAAGPRSAV 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576688|ref|XP_003556462.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim23-like [Glycine max]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/186 (70%), Positives = 157/186 (84%), Gaps = 2/186 (1%)

Query: 1   MADSSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQY 60
           MADSSSN      HN R YHPYQ  +VPIQ LYNLPT+PE LF EE+  + RSWG+NLQY
Sbjct: 1   MADSSSNS--KDHHNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGDNLQY 58

Query: 61  YTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIF 120
           YTGSGYL+GA+ GA +G+V+GLR+AE +DSLK+R+NRVLNSGG  GRR GNSLGV+GLIF
Sbjct: 59  YTGSGYLAGAITGAARGTVQGLREAESADSLKIRLNRVLNSGGLAGRRLGNSLGVVGLIF 118

Query: 121 AGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAV 180
           AG+ESG+ +LR +DDL+N+  AGLGTGA+YRAA G +SAA+AGAIGGI AAAAVAGKQA+
Sbjct: 119 AGLESGMTHLRGTDDLVNSAVAGLGTGALYRAAAGPQSAAIAGAIGGIAAAAAVAGKQAL 178

Query: 181 KRYVPI 186
           KRYVPI
Sbjct: 179 KRYVPI 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115450293|ref|NP_001048747.1| Os03g0114900 [Oryza sativa Japonica Group] gi|27476098|gb|AAO17029.1| Putative mitochondrial inner membrane protein [Oryza sativa Japonica Group] gi|108705843|gb|ABF93638.1| Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed [Oryza sativa Japonica Group] gi|113547218|dbj|BAF10661.1| Os03g0114900 [Oryza sativa Japonica Group] gi|215737360|dbj|BAG96289.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/182 (62%), Positives = 138/182 (75%)

Query: 4   SSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTG 63
           S +    +     R Y+PYQ  ++P + LY+LPTSPEFLF EESL  RRSWGENL YYTG
Sbjct: 11  SGTRDDRTDASGRRLYNPYQDLNIPYKQLYDLPTSPEFLFQEESLAQRRSWGENLTYYTG 70

Query: 64  SGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGM 123
            GYLSGAV GA  G  +  R AEP D+ K+R NRVLNS G  GRR GN+LGV+GL++AG+
Sbjct: 71  IGYLSGAVAGAAVGLRDAARNAEPGDTAKIRANRVLNSCGSNGRRMGNTLGVIGLLYAGI 130

Query: 124 ESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRY 183
           ESG++ +RD DD +N+V AGLGTGA++RAA G RSAAVAGAIGG+ A AA+AGKQA KRY
Sbjct: 131 ESGMVAVRDRDDWINSVTAGLGTGALFRAANGPRSAAVAGAIGGVLAGAAMAGKQAAKRY 190

Query: 184 VP 185
           VP
Sbjct: 191 VP 192

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784156|gb|ABK23235.1| unknown [Picea sitchensis]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/189 (61%), Positives = 141/189 (74%), Gaps = 6/189 (3%)

Query: 3   DSSSNQTHSKEHNYRRYHPYQQFD-----VPIQNLYNLPTSPEFLFHEESLNSRRSWGEN 57
           D S++    +E   R Y+PY          PIQN+Y +PTSPEFLF EE+   RRSWGEN
Sbjct: 2   DHSADGGGDREGR-RLYNPYGDLHGAIDYRPIQNIYQIPTSPEFLFQEEAAVQRRSWGEN 60

Query: 58  LQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLG 117
           + YYTG GYL GAV GA  G VEGL+  EP DS+KLRVNRVLN+ G  GR+FGN LGV+G
Sbjct: 61  ITYYTGCGYLLGAVSGASVGLVEGLKAREPGDSMKLRVNRVLNASGHTGRKFGNRLGVIG 120

Query: 118 LIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGK 177
           L++AG+ESG++  R +DD+LN+V AGLGTGA+Y+AA G RSAAVAGAIGG+   A VAGK
Sbjct: 121 LLYAGLESGIVAGRGTDDILNSVCAGLGTGALYKAAAGPRSAAVAGAIGGLAVGALVAGK 180

Query: 178 QAVKRYVPI 186
           QA+KRYVPI
Sbjct: 181 QALKRYVPI 189

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2084913	188	TIM23-3 "translocase inner mem	1.0	0.989	0.526	4.1e-49
TAIR|locus:2007893	187	TIM23-1 "AT1G17530" [Arabidops	0.994	0.989	0.515	9.8e-48
TAIR|locus:2030260	188	TIM23-2 "translocase inner mem	0.983	0.973	0.5	2.6e-47
POMBASE|SPCC16A11.09c	210	tim23 "TIM23 translocase compl	0.833	0.738	0.341	1.7e-18
ASPGD|ASPL0000008496	205	AN6348 [Emericella nidulans (t	0.602	0.546	0.339	2.3e-14
CGD|CAL0003881	218	TIM23 [Candida albicans (taxid	0.752	0.642	0.321	4.9e-14
UNIPROTKB|Q59YG5	218	TIM23 "Putative uncharacterize	0.752	0.642	0.321	4.9e-14
SGD|S000005300	222	TIM23 "Essential component of	0.752	0.630	0.314	1e-13
RGD|1559672	209	RGD1559672 "similar to Translo	0.661	0.588	0.333	9.4e-11
UNIPROTKB|Q5XIW0	209	Timm23 "RCG62963" [Rattus norv	0.661	0.588	0.333	9.4e-11

TAIR|locus:2084913 TIM23-3 "translocase inner membrane subunit 23-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 99/188 (52%), Positives = 128/188 (68%)

Query:     1 MADSSSNQT-HSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQ 59
             MAD  ++ T H ++  YR+Y+PYQQ ++P + LY LPTSPEFLF EE+   R +WGENL 
Sbjct:     1 MADPMNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLT 60

Query:    60 YYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLI 119
             ++TG GY +G+VLGA KG++ G+R AE  +SLK+R NR+LNSGG V RR GN LG +GL+
Sbjct:    61 FFTGWGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLM 120

Query:   120 FAGMESGLIYLRDSDD-LLNTVAAGLGTGAIYRAAGGLRSXXXXXXXXXXXXXXXXXXKQ 178
             FA MESG+ Y+RD DD  L TV AGL TG +YRAA G RS                  ++
Sbjct:   121 FAAMESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRR 180

Query:   179 AVKRYVPI 186
              VKR+VPI
Sbjct:   181 IVKRFVPI 188

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2007893 TIM23-1 "AT1G17530" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 97/188 (51%), Positives = 125/188 (66%)

Query:     1 MADSSSNQTHSKEHNYRRYHPYQQFDVPI--QNLYNLPTSPEFLFHEESLNSRRSWGENL 58
             MA + S+  H  + N R YHPYQ + VPI  Q LY LPTSPEFLF EESL  RRSWGENL
Sbjct:     1 MAINRSSD-HESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENL 59

Query:    59 QYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGL 118
              +YTG+GYL+G+V GA  G   G++  E  D+ KL++NR+LNS GQ GR +GN +G++GL
Sbjct:    60 TFYTGTGYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGL 119

Query:   119 IFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSXXXXXXXXXXXXXXXXXXKQ 178
             I+AG+ESG++ + D DD+  +V AGLGTGA++RAA G+RS                  KQ
Sbjct:   120 IYAGIESGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQ 179

Query:   179 AVKRYVPI 186
               KRY  I
Sbjct:   180 VFKRYAHI 187

GO:0005622 "intracellular" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2030260 TIM23-2 "translocase inner membrane subunit 23-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 93/186 (50%), Positives = 124/186 (66%)

Query:     4 SSSNQTHSKEHNYRRYHPYQQFDVPI---QNLYNLPTSPEFLFHEESLNSRRSWGENLQY 60
             +++   H  + N R Y+PYQ ++VPI   Q LY LPTSPEFLF EE+L  RRSWGENL +
Sbjct:     3 ANNRSDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTF 62

Query:    61 YTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIF 120
             YTG+ YL G+V GA  G + G++  E  D+ KL++NR+LNS GQ GR +GN +G++GL++
Sbjct:    63 YTGTAYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVY 122

Query:   121 AGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSXXXXXXXXXXXXXXXXXXKQAV 180
             AG+ESG++   D DD+  +V AGLGTGA+ RAA G+RS                  KQ V
Sbjct:   123 AGIESGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIV 182

Query:   181 KRYVPI 186
             KRYVPI
Sbjct:   183 KRYVPI 188

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

POMBASE|SPCC16A11.09c tim23 "TIM23 translocase complex subunit Tim23 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 53/155 (34%), Positives = 83/155 (53%)

Query:     4 SSSNQTHSKEHNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTG 63
             ++S+     E +  + HP    D P+  L     +   L  +      R W ++L Y TG
Sbjct:    29 TASDILSGSEFDPAKLHPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTG 88

Query:    64 SGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGM 123
             + YLSG  +G + G  EG+++ +   S +LR+N +LN   + G   GNSLGVL L++ G+
Sbjct:    89 TSYLSGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGI 148

Query:   124 ESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRS 158
              S + Y R      N+VAAG  TGA+Y++  GLR+
Sbjct:   149 NSLIGYKRQKHGWENSVAAGALTGALYKSTRGLRA 183

GO:0005739 "mitochondrion" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISO

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=ISO

ASPGD|ASPL0000008496 AN6348 [Emericella nidulans (taxid:162425)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/112 (33%), Positives = 65/112 (58%)

Query:    46 ESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQV 105
             +S+   R W ++L Y TG+ Y++   +G   G  EGL++   +   K+R+N VLNS  + 
Sbjct:    70 QSVLPSRGWSDDLCYGTGTTYVTALAIGGAWGLAEGLKRTPVTAPPKIRLNGVLNSITRR 129

Query:   106 GRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLR 157
             G   GNS GV+ +++ G+ S   Y R   D  N++AAG  +G ++++  GL+
Sbjct:   130 GPFLGNSAGVVAMVYNGLNSFAGYARGKHDAANSIAAGAVSGMVFKSTRGLK 181

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

CGD|CAL0003881 TIM23 [Candida albicans (taxid:5476)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 45/140 (32%), Positives = 75/140 (53%)

Query:    18 RYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKG 77
             R HP    D  I+ L         +   + L   RSW ++L Y TG+ YL G  +G + G
Sbjct:    54 RLHPLAGLDKGIEYLDLEEEQLNTVEGSKGLIPSRSWTDDLCYGTGAVYLLGLGIGGLYG 113

Query:    78 SVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLL 137
               +G++    S   K+++N +LN+  + G   GNS GVL L +  ++S +  +R+  D L
Sbjct:   114 FQQGIKTLPESAPSKVKLNHILNNITKRGPFLGNSAGVLALTYNLIDSTIDGIREKHDDL 173

Query:   138 NTVAAGLGTGAIYRAAGGLR 157
             N+V AG   GA+++++ GL+
Sbjct:   174 NSVTAGALAGALFKSSAGLK 193

GO:0005886 "plasma membrane" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

UNIPROTKB|Q59YG5 TIM23 "Putative uncharacterized protein TIM23" [Candida albicans SC5314 (taxid:237561)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 45/140 (32%), Positives = 75/140 (53%)

Query:    18 RYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKG 77
             R HP    D  I+ L         +   + L   RSW ++L Y TG+ YL G  +G + G
Sbjct:    54 RLHPLAGLDKGIEYLDLEEEQLNTVEGSKGLIPSRSWTDDLCYGTGAVYLLGLGIGGLYG 113

Query:    78 SVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLL 137
               +G++    S   K+++N +LN+  + G   GNS GVL L +  ++S +  +R+  D L
Sbjct:   114 FQQGIKTLPESAPSKVKLNHILNNITKRGPFLGNSAGVLALTYNLIDSTIDGIREKHDDL 173

Query:   138 NTVAAGLGTGAIYRAAGGLR 157
             N+V AG   GA+++++ GL+
Sbjct:   174 NSVTAGALAGALFKSSAGLK 193

GO:0005886 "plasma membrane" evidence=IDA

SGD|S000005300 TIM23 "Essential component of the TIM23 complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 44/140 (31%), Positives = 71/140 (50%)

Query:    18 RYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKG 77
             R HP    D  ++ L         L   + L   R W ++L Y TG+ YL G  +G   G
Sbjct:    57 RLHPLAGLDKGVEYLDLEEEQLSSLEGSQGLIPSRGWTDDLCYGTGAVYLLGLGIGGFSG 116

Query:    78 SVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLL 137
              ++GL+   P+   KL++N VLN   + G   GN+ G+L L +  + S +  LR   D  
Sbjct:   117 MMQGLQNIPPNSPGKLQLNTVLNHITKRGPFLGNNAGILALSYNIINSTIDALRGKHDTA 176

Query:   138 NTVAAGLGTGAIYRAAGGLR 157
              ++ AG  TGA+++++ GL+
Sbjct:   177 GSIGAGALTGALFKSSKGLK 196

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0015266 "protein channel activity" evidence=IDA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IMP;IDA

GO:0030150 "protein import into mitochondrial matrix" evidence=IMP

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA;IPI

GO:0016021 "integral to membrane" evidence=IEA;ISM

GO:0016020 "membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|1559672 RGD1559672 "similar to Translocase of inner mitochondrial membrane 23 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 42/126 (33%), Positives = 66/126 (52%)

Query:    33 YNLPTSPEFLFHEESLNSRRSWGENLQYYT-GSGYLSGAVLGAIKGSVEGLRQAEPSDSL 91
             Y +  + EF+      N  R   E L ++T G   ++GA  GA+ G   GL++ +     
Sbjct:    52 YLVQDTDEFIL-PTGANKTRGRFE-LAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWS 109

Query:    92 KLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYR 151
             K R  ++LN   + G  + N+LG L L+++     +   R ++D LNTVAAG  TG +Y+
Sbjct:   110 KPRNVQILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYK 169

Query:   152 AAGGLR 157
               GGLR
Sbjct:   170 CTGGLR 175

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5XIW0 Timm23 "RCG62963" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 42/126 (33%), Positives = 66/126 (52%)

Query:    33 YNLPTSPEFLFHEESLNSRRSWGENLQYYT-GSGYLSGAVLGAIKGSVEGLRQAEPSDSL 91
             Y +  + EF+      N  R   E L ++T G   ++GA  GA+ G   GL++ +     
Sbjct:    52 YLVQDTDEFIL-PTGANKTRGRFE-LAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWS 109

Query:    92 KLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYR 151
             K R  ++LN   + G  + N+LG L L+++     +   R ++D LNTVAAG  TG +Y+
Sbjct:   110 KPRNVQILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYK 169

Query:   152 AAGGLR 157
               GGLR
Sbjct:   170 CTGGLR 175

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9USM7	TIM23_SCHPO	No assigned EC number	0.3085	0.9139	0.8095	yes	no
Q9LNQ1	TI231_ARATH	No assigned EC number	0.6033	0.9516	0.9465	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	1e-45
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	3e-35
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	4e-12
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	1e-09
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	3e-04

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score =  147 bits (372), Expect = 1e-45
 Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 7/148 (4%)

Query: 32  LYNLPTSPEFLFHEESL-------NSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQ 84
           L  L   PE+L  EE         N  R W E+L + TG+ YL+G  +GA+ G   GL++
Sbjct: 1   LAPLDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKE 60

Query: 85  AEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGL 144
            +     KLR+N++LN   + G  +GN+LG+L L++ G+ S +   R   D  N+VAAG 
Sbjct: 61  TQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGA 120

Query: 145 GTGAIYRAAGGLRSAAVAGAIGGITAAA 172
            TGA+Y++  GLR  A +GA+G   A  
Sbjct: 121 LTGALYKSTRGLRGMARSGALGATAAGV 148

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score =  119 bits (301), Expect = 3e-35
 Identities = 50/128 (39%), Positives = 71/128 (55%)

Query: 53  SWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNS 112
              E + Y TG G+L GAV G   G+  GL  A  S  LKLR+N VLN+ G+ G   GN+
Sbjct: 1   PCPERIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNN 60

Query: 113 LGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAA 172
             V G +++G+E  L  LR  +D  N++ AG  TGA+    GG ++AAV  A+G   +AA
Sbjct: 61  FAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAAAVGAAVGAAFSAA 120

Query: 173 AVAGKQAV 180
                + +
Sbjct: 121 IEGLGKLL 128

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 61.4 bits (149), Expect = 4e-12
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 52  RSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGN 111
             +  +L Y TG  +L G   G + G   GL         +L++   LN+ G+ G   G 
Sbjct: 65  GGFSSSLAYGTGLVHLLGLNFGGVWG---GLFSTIDCTPFRLQLKEQLNNAGKRGFFTGK 121

Query: 112 SLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAA 171
           +LGVLGLI+AG+ S +  LR   D+ N +AAG  TGA   ++ G ++  + GA     AA
Sbjct: 122 NLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGA---GFAA 178

Query: 172 AAVAGKQAVKRYV 184
            +     A+K   
Sbjct: 179 FSAGITLAMKSED 191

Length = 191

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 63  GSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRR----FGNSLGVLGL 118
           G  +  G + G I   ++G+R +   +          + G  + R+     G +  + G 
Sbjct: 20  GGAFSMGCIGGFIWHFLKGMRNSPKGE--------RFSGGFYLLRKRAPILGGNFAIWGG 71

Query: 119 IFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGI 168
           +F+  +  L YLR  +D  N +A+G  TG +    GG RSA      GGI
Sbjct: 72  LFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGI 121

Length = 164

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 63  GSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAG 122
           G  +  G + G+I  + +G R +   + L   +  +      +G  F     V G +F+ 
Sbjct: 18  GGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFA----VWGGLFST 73

Query: 123 MESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAG 176
           ++  ++ +R  +D  N++ +G  TGA     GG R A    AI G    A + G
Sbjct: 74  IDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPR-AMRGSAILGACILAVIEG 126

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG3324	206	consensus Mitochondrial import inner membrane tran	100.0
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	100.0
PTZ00236	164	mitochondrial import inner membrane translocase su	100.0
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.98
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.94
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.92
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.87
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.84
KOG4608	270	consensus Uncharacterized conserved protein [Funct	99.32
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	97.09
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	96.36
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	93.17
KOG4096	75	consensus Uncharacterized conserved protein [Funct	91.05
KOG1398	460	consensus Uncharacterized conserved protein [Funct	87.39
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	86.61
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	83.59

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-53  Score=342.38  Aligned_cols=183  Identities=50%  Similarity=0.801  Sum_probs=173.9

Q ss_pred             CCCCCCcCCCCCCCCCCCCCCCCCCCc--ccccCCCCCCcccchhhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhh
Q 029873            3 DSSSNQTHSKEHNYRRYHPYQQFDVPI--QNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVE   80 (186)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~py~~~~~~~--~~~~~~~~~pe~lf~ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~   80 (186)
                      ++.+.+.|. +...++||||+++|.|.  ++||.+|++|||||+||..+++|.|.|++||.||++|+.|+++|+++|++.
T Consensus        21 n~~sg~~~~-d~~~~~l~P~~~ld~~~n~d~ly~~~~~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~   99 (206)
T KOG3324|consen   21 NIGSGPSHA-DLDPRPLNPYQPLDKPLNVDYLYLLPDQPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLIL   99 (206)
T ss_pred             CCCCCCCcc-cCCccccCcccccccccccchhhhccCCccccCchhccccccchhhhhheeccchhccchhhhhHHHHHH
Confidence            344554332 37789999999999888  999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHH
Q 029873           81 GLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAA  160 (186)
Q Consensus        81 G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~  160 (186)
                      |+++++++.+.|+|+|+|||+++|+|+.|||++|+++++|+++|+++++.|+|||++|+|+||++||+|||+++|+|+++
T Consensus       100 Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~a  179 (206)
T KOG3324|consen  100 GLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAA  179 (206)
T ss_pred             hhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhh-hcCC
Q 029873          161 VAGAIGGITAAAAVAGKQAVKR-YVPI  186 (186)
Q Consensus       161 ig~~~G~~la~~~~~~~~~~~r-~~~~  186 (186)
                      +++++|++++++|++.|+.++| |+||
T Consensus       180 v~ga~g~~aa~aw~l~k~~~~~r~~~~  206 (206)
T KOG3324|consen  180 VAGAVGGTAAAAWTLGKRIVKRRFVPI  206 (206)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhcCCC
Confidence            9999999999999999999998 9997

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=100.00  E-value=6e-45  Score=288.44  Aligned_cols=140  Identities=36%  Similarity=0.592  Sum_probs=129.2

Q ss_pred             cCCCCCCcccchhhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhh
Q 029873           33 YNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNS  112 (186)
Q Consensus        33 ~~~~~~pe~lf~ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~  112 (186)
                      |...+++|++|||++ .++|.|+|++||.||++|++|.++|+++|+++|++++|.+.+.|+|+|+++|+++++++++||+
T Consensus        10 ~l~~~~~~~~~~~g~-~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~   88 (149)
T TIGR00983        10 YLVQEEDELSLLTGA-NPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNT   88 (149)
T ss_pred             HHcCcchhhcCCCCC-CCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHH
Confidence            444445555555554 3899999999999999999999999999999999998877788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHH
Q 029873          113 LGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAA  173 (186)
Q Consensus       113 ~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~  173 (186)
                      ||+|+++|+++||.++++|+|||+||+|+||++||++|++++|||++++++++|++++++|
T Consensus        89 ~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~~  149 (149)
T TIGR00983        89 LGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGVW  149 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999876

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=100.00  E-value=2.3e-32  Score=218.94  Aligned_cols=135  Identities=21%  Similarity=0.286  Sum_probs=126.7

Q ss_pred             hhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHH
Q 029873           45 EESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGME  124 (186)
Q Consensus        45 ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e  124 (186)
                      +|..+++|+|  ++....|.+|++|++.|+++++++|+||+|.+    .|++.+++.++++++++|++||+||++|+++|
T Consensus         4 ~~~~r~pcp~--ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g----~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~e   77 (164)
T PTZ00236          4 RDLSREPCPD--RIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKG----ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFD   77 (164)
T ss_pred             hhhCcCCCch--HHHHhccHHHHHHHHHHHHHHHHHHHHhCCCc----chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            3455666766  88889999999999999999999999999865    47899999999999999999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhhhcC
Q 029873          125 SGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVP  185 (186)
Q Consensus       125 ~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r~~~  185 (186)
                      |+++++|+|||+||+++||++||++++++.||+++++++++|++++++++++..+++|+.+
T Consensus        78 c~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~  138 (164)
T PTZ00236         78 CTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM  138 (164)
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999854

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.98  E-value=1e-31  Score=216.48  Aligned_cols=135  Identities=19%  Similarity=0.319  Sum_probs=127.7

Q ss_pred             hhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHH
Q 029873           45 EESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGME  124 (186)
Q Consensus        45 ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e  124 (186)
                      ||..+++|.|  ++....|.+|.+|++.|+++|+++|++++|.+    .|++.++++++.+++++|++||+|+++|+++|
T Consensus         2 ~~~~r~pcp~--r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g----~rl~g~l~av~~rap~~g~~Fav~g~lys~~e   75 (170)
T TIGR00980         2 EEYTREPCPY--RILDDFGGAFAMGTIGGSIFQAFKGFRNSPKG----EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTID   75 (170)
T ss_pred             cccccCCCcc--hhHHhhhHHHHHHHHHHHHHHHHHHhhcCCcc----chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            5667788888  89999999999999999999999999998754    37889999999999999999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhhhcC
Q 029873          125 SGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVP  185 (186)
Q Consensus       125 ~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r~~~  185 (186)
                      |+++++|+|||+||+++||++||++|++++|+++++.+|++++++.++++....+++|+.+
T Consensus        76 c~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~  136 (170)
T TIGR00980        76 CAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAA  136 (170)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999853

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.94  E-value=2.6e-26  Score=175.75  Aligned_cols=127  Identities=31%  Similarity=0.507  Sum_probs=119.1

Q ss_pred             CcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 029873           53 SWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRD  132 (186)
Q Consensus        53 ~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~  132 (186)
                      +|.|++++.++.+|+.|+++|++.+.+++....+...+.|+|++.+++.+++++++++++||.++++|+++||.++++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            47789999999999999999999999988665556677888999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHH
Q 029873          133 SDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQA  179 (186)
Q Consensus       133 k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~  179 (186)
                      |||+||+++||++||++|+.+.|++.++.+++++++++++++..+++
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~  127 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM  127 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999988764

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2e-26  Score=185.43  Aligned_cols=134  Identities=20%  Similarity=0.319  Sum_probs=126.7

Q ss_pred             hhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHH
Q 029873           45 EESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGME  124 (186)
Q Consensus        45 ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e  124 (186)
                      +|..+++|.|  ++.-..|.+|.+|.+.|.++++++|++|+|.|.    |+...++.+..+.+..|++|++|+++|+.+|
T Consensus         2 ~e~sr~pcp~--riv~d~g~afamg~igG~~f~~ikG~~nap~G~----r~~gg~~av~~~ap~~ggsFAvwgglfSt~d   75 (183)
T KOG1652|consen    2 MEYSREPCPI--RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA----RLVGGISAVKMRAPQSGGSFAVWGGLFSTVD   75 (183)
T ss_pred             CcccCCCCCc--eeeccccchhhhcccccceeeeeeeeecCCccc----ccccchhhhhccCcccccceeeeechhhHHH
Confidence            4556788888  888999999999999999999999999998764    8889999999999999999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q 029873          125 SGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYV  184 (186)
Q Consensus       125 ~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r~~  184 (186)
                      |++..+|+|||.||++++|++||+++..+.|+++++-++++++++.+.++.....++|+.
T Consensus        76 C~Lv~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~  135 (183)
T KOG1652|consen   76 CALVAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIA  135 (183)
T ss_pred             HHHHHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999873

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.3e-22  Score=160.48  Aligned_cols=123  Identities=22%  Similarity=0.221  Sum_probs=106.2

Q ss_pred             cCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCc---hHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHH
Q 029873           51 RRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSD---SLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGL  127 (186)
Q Consensus        51 ~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~---~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l  127 (186)
                      -..| ++|.+++..+.|+|+.+|+++|++.+..+....+   ..++-+.++++.++++....+++|+++|++|++.||.+
T Consensus        36 le~~-n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~i  114 (168)
T KOG3225|consen   36 LEEE-NSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLI  114 (168)
T ss_pred             HHHh-cchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHH
Confidence            3444 3789999999999999999999999988743222   22344567799999999999999999999999999999


Q ss_pred             HHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHH
Q 029873          128 IYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAV  174 (186)
Q Consensus       128 ~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~  174 (186)
                      |++|.|+||+|+++||++||+.+..++||+++++||+..++++++++
T Consensus       115 E~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id  161 (168)
T KOG3225|consen  115 ESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAID  161 (168)
T ss_pred             HHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999998777666554

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.2e-22  Score=161.89  Aligned_cols=146  Identities=29%  Similarity=0.400  Sum_probs=132.3

Q ss_pred             ccccCCCCCCcccchhhhh----------hccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHH
Q 029873           30 QNLYNLPTSPEFLFHEESL----------NSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVL   99 (186)
Q Consensus        30 ~~~~~~~~~pe~lf~ee~~----------~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~l   99 (186)
                      ++|-++-+.-+|+.+++..          ...+.|.+.++|.|+..++.|.-+|++||   |+.+.....++++|++..+
T Consensus        33 ~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwG---gl~~~i~~~~~r~q~~~~~  109 (191)
T COG5596          33 EKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWG---GLFSTIDCTPFRLQLKEQL  109 (191)
T ss_pred             hHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCcccccccc---ceeeccccchHHHHHhhcc
Confidence            5556666777777777762          45688999999999999999999999999   7777666778999999999


Q ss_pred             HhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHH
Q 029873          100 NSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQ  178 (186)
Q Consensus       100 n~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~  178 (186)
                      |.++++|+..|+++|++|+.|+++||.++.+|+|||+.|+|.+|+.||+.|++.+|++++.++++..+++++.|+..++
T Consensus       110 ~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~~~~~~~  188 (191)
T COG5596         110 NNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFSAGITLAMK  188 (191)
T ss_pred             ccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhhhhhHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999887665

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=5.2e-13  Score=112.27  Aligned_cols=161  Identities=22%  Similarity=0.262  Sum_probs=119.3

Q ss_pred             CCCCCCCCCCCCCCCcccccCCCCCCcccchhhhhhcc-CCcccchhhhh-hhhHHHHhHHHHHHHHhhhcccCCC----
Q 029873           14 HNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSR-RSWGENLQYYT-GSGYLSGAVLGAIKGSVEGLRQAEP----   87 (186)
Q Consensus        14 ~~~~~~~py~~~~~~~~~~~~~~~~pe~lf~ee~~~~~-r~~~e~l~~~t-G~~yl~G~~~Gg~~G~~~G~~~~~~----   87 (186)
                      +.++.+.||.-...||.      |.+|-|=   ++..+ -+|.-+.++.+ -++|++|.+.|++-+...+-.+...    
T Consensus        36 ~e~~~~k~~eave~ppe------Tgwerlk---~lfg~dis~e~a~v~~v~a~~flgG~~~ggat~s~~A~~~y~~nsqa  106 (270)
T KOG4608|consen   36 EERQKRKPYEAVEYPPE------TGWERLK---ELFGKDISKELANVCKVAATAFLGGWVYGGATASIHAKQQYIENSQA  106 (270)
T ss_pred             HhhcccccccccCCCCc------cchHHHH---HHhCCCcchhhHHHHHHHHHhhhhheeeccchHhHHHHHHHHhccHH
Confidence            44567788876654443      5555221   01111 25544455555 4578899999998888776654321    


Q ss_pred             ------CchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHH
Q 029873           88 ------SDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAV  161 (186)
Q Consensus        88 ------g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~i  161 (186)
                            -+-.|....+....+.|.|.+||.++|.+...|.++...+..||+|+|.||-++||++||++|+..-|++.++.
T Consensus       107 ~ky~sh~davk~~~d~air~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa  186 (270)
T KOG4608|consen  107 EKYHSHFDAVKSAHDAAIRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAA  186 (270)
T ss_pred             HHhhChHHHHHHHHHHHHHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhh
Confidence                  12233344567778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhh
Q 029873          162 AGAIGGITAAAAVAGKQAVKRY  183 (186)
Q Consensus       162 g~~~G~~la~~~~~~~~~~~r~  183 (186)
                      +.++|+++++...+.-.++.++
T Consensus       187 ~vilG~~lG~tv~~~l~l~q~a  208 (270)
T KOG4608|consen  187 GVILGALLGTTVGGLLMLFQKA  208 (270)
T ss_pred             cceeehhhcchHHHHHHHHHHH
Confidence            9999888888777665555443

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=8.9e-05  Score=60.75  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=74.2

Q ss_pred             chhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHH-HHHHHHHHHHHHHHHHhccCc
Q 029873           57 NLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLG-VLGLIFAGMESGLIYLRDSDD  135 (186)
Q Consensus        57 ~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g-~~g~~ys~~e~~l~~~R~k~D  135 (186)
                      +...+-+.++-.+.+.+.++.-++|++..++..    +...-+...+.+.+-.|.+|| +||.+++.++|....+|.++|
T Consensus        33 ~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g----~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~  108 (191)
T COG5596          33 EKLADFMKAFSYSCIGKSALSGLKGFRLGGPSG----GFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQ  108 (191)
T ss_pred             hHHhhhccchhhcchhhhhhhcccccccccccc----cchhhcccccccccccCccccccccceeeccccchHHHHHhhc
Confidence            444455555556778888888888888765432    223445555666777888888 999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCChH
Q 029873          136 LLNTVAAGLGTGAIYRAAGGLR  157 (186)
Q Consensus       136 ~~Nsv~AG~~TGal~~~~~G~r  157 (186)
                      .||....|+.||..+....+++
T Consensus       109 ~~n~~~rg~ftG~n~GvlGl~y  130 (191)
T COG5596         109 LNNAGKRGFFTGKNLGVLGLIY  130 (191)
T ss_pred             cccccccccccccccceeeeec
Confidence            9999999999999887765443

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=96.36  E-value=0.026  Score=44.95  Aligned_cols=100  Identities=21%  Similarity=0.092  Sum_probs=58.7

Q ss_pred             ccCCCCCCcccchhhhhh--ccCCcccchhhh-hhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhh
Q 029873           32 LYNLPTSPEFLFHEESLN--SRRSWGENLQYY-TGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRR  108 (186)
Q Consensus        32 ~~~~~~~pe~lf~ee~~~--~~r~~~e~l~~~-tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~  108 (186)
                      ||.+|++|||||+||...  ++..=..+.... .=....+..+.|.+.|...|+.+--...+.......-+|.+-+...+
T Consensus         1 l~~l~~~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~   80 (149)
T TIGR00983         1 LAPLDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTR   80 (149)
T ss_pred             CCCCCCCcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence            577999999999998631  111101122222 22334455788999999999986432222212223456666666666


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHh
Q 029873          109 FGNSLGVLGLIFAGMESGLIYLR  131 (186)
Q Consensus       109 ~g~~~g~~g~~ys~~e~~l~~~R  131 (186)
                      -+-++|---++...+=++++..=
T Consensus        81 ~g~~~G~~~g~~g~lys~~e~~i  103 (149)
T TIGR00983        81 RGPFWGNTLGILALVYNGINSII  103 (149)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666665544

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=93.17  E-value=0.52  Score=35.49  Aligned_cols=125  Identities=23%  Similarity=0.058  Sum_probs=84.4

Q ss_pred             hhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchh
Q 029873           58 LQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLL  137 (186)
Q Consensus        58 l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~  137 (186)
                      |..++..+.+.|...|.++|.+.+..+...........+..++.+-+.-.+.+.+++..-+.+.++=++++..=++-=-.
T Consensus         2 c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k   81 (128)
T PF02466_consen    2 CPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGK   81 (128)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45567888899999999999998887542211111223445666666665566667777777777777776655443346


Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 029873          138 NTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKR  182 (186)
Q Consensus       138 Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r  182 (186)
                      +-..-.+++|++=..--+.+.-..+.+.++++.++....=..++|
T Consensus        82 ~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~  126 (128)
T PF02466_consen   82 DDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGR  126 (128)
T ss_pred             cccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhc
Confidence            778888888888877777777777777777776666655544444

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.05  E-value=0.19  Score=35.37  Aligned_cols=63  Identities=19%  Similarity=0.255  Sum_probs=39.0

Q ss_pred             chhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHH
Q 029873           57 NLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESG  126 (186)
Q Consensus        57 ~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~  126 (186)
                      ++-...-+++.+|...|.++|-++++|.-+++       ...++.++|.-...+.+||.+-.+=+++.|.
T Consensus        10 KikmG~~mG~avG~a~G~lfGgf~~lR~g~~g-------~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen   10 KIKMGLMMGGAVGGATGALFGGFAALRYGPRG-------RGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             HHHHHHHHHhhhhhhhhhhccchhheeecCCh-------hHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            33333444555566666677777777754432       4566667777777777888776666665553

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.39  E-value=0.86  Score=41.77  Aligned_cols=46  Identities=24%  Similarity=0.286  Sum_probs=41.2

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 029873          104 QVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAI  149 (186)
Q Consensus       104 k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal  149 (186)
                      |...++|-=+|.+.++|.++.|.+.+.+.+||..|+++||.+++.-
T Consensus       297 renlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~S  342 (460)
T KOG1398|consen  297 RENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLS  342 (460)
T ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhhe
Confidence            5566677778999999999999999999999999999999998863

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=86.61  E-value=0.77  Score=31.92  Aligned_cols=49  Identities=20%  Similarity=0.291  Sum_probs=25.9

Q ss_pred             hhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHH
Q 029873           64 SGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLI  119 (186)
Q Consensus        64 ~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~  119 (186)
                      ++..+|.+.|.++|.+..++.-++       -+..++.++|.-...|.+||.+-.+
T Consensus        13 MG~~VG~~~G~l~G~~~~~r~g~~-------~~~~~~~lg~~~l~sg~tFG~Fm~i   61 (67)
T PF10247_consen   13 MGGAVGGAFGALFGTFSAFRYGAR-------GRGLMRTLGKYMLGSGATFGFFMSI   61 (67)
T ss_pred             HhhHHHhhhhhhhhhHHHhccCCC-------CcchHhHHhHHHhcchhHHHHHHhh
Confidence            344445555555555555554322       2445556666666666666665433

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=83.59  E-value=1.4  Score=30.42  Aligned_cols=39  Identities=21%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             HHHHhHHHHHHHHhhhcccCC-CCchHHHHHHHHHHhhcc
Q 029873           66 YLSGAVLGAIKGSVEGLRQAE-PSDSLKLRVNRVLNSGGQ  104 (186)
Q Consensus        66 yl~G~~~Gg~~G~~~G~~~~~-~g~~~k~r~~~~ln~~~k  104 (186)
                      |+.|+++|++.|..-|+..+| .|...|.++....+.+..
T Consensus         1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~   40 (74)
T PF12732_consen    1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKD   40 (74)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence            455666666666666666665 355555566655555443

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00