Citrus Sinensis ID: 029928

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRNP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDdaldndeaeEETEELTNQVLDEIGVDvasqlsaapkgkiaskntedasssGIDELEKRLAALRNP
Flexible Loop (DISEMBL)
mekeigalqqeEKKLVAEIKrtaktgnegatKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQlsaapkgkiaskntedasssgidelekrlaalrnp
Low Complexity Region (SEG)
MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVavgmkgaskamaamnkQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIddaldndeaeeeteeltnQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRNP
Disordered region (IsUnstruct)
*****************************ATKILARQLIRLRQQIANLQGSRAQIRGIAT*****************************************************************************************************************************
Disordered Region (DISOPRED)
*EK***************************TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHA************K****************VM****************************EAEEETEELTNQVLDEIGV*********************************LAALR**
Disordered Region (DISEMBL)
MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN**********TNQVLDEIGVDVASQLSA******************IDELEKRLAALRNP
Disordered Region (DISPRO)
MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLS**********************LEKRLAALR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q941D5	210	Vacuolar protein sorting-	yes	no	0.989	0.871	0.863	7e-88
Q0WTY4	222	Vacuolar protein sorting-	no	no	0.989	0.824	0.704	1e-73
Q66IV6	214	Charged multivesicular bo	N/A	no	0.956	0.827	0.402	2e-33
Q5F3A2	214	Charged multivesicular bo	yes	no	0.956	0.827	0.391	1e-32
Q6NVL7	214	Charged multivesicular bo	yes	no	0.956	0.827	0.391	2e-32
Q7SYR0	214	Charged multivesicular bo	N/A	no	0.951	0.822	0.393	4e-32
Q6NXD2	214	Charged multivesicular bo	yes	no	0.951	0.822	0.382	1e-31
Q54DB1	198	Charged multivesicular bo	yes	no	0.837	0.782	0.425	2e-31
Q5RAV2	213	Charged multivesicular bo	yes	no	0.951	0.826	0.391	3e-31
Q9UQN3	213	Charged multivesicular bo	yes	no	0.951	0.826	0.391	3e-31

>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1

 Score =  322 bits (826), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 158/183 (86%), Positives = 173/183 (94%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +EKEIG+LQ EEKKLV EIKRTAK+GNEGATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct: 28  IEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHAH+SVA GM+GA+KAMAAM+K M+PAKQAKVMREFQKQSAQMDMTTEMMSD+ID
Sbjct: 88  HTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DALDNDEAE+ETE+LTNQVLDEIG+D+ASQLS+APKGKI  K  ED  SSGIDELEKRLA
Sbjct: 148 DALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLA 207

Query: 181 ALR 183
           ALR
Sbjct: 208 ALR 210

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2

 Score =  275 bits (703), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/193 (70%), Positives = 164/193 (84%), Gaps = 10/193 (5%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +E+EI +LQ EEK+LVAEIK+TAKTGNE ATKILARQL+RLRQQI NLQGSRAQIRG+ T
Sbjct: 28  IEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQA++A +S++ GMKGA+KAM AMNKQM P KQAKV+++FQKQSAQ+DMT EMMS+ ID
Sbjct: 88  HTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASK----------NTEDASSS 170
           + LD DEAEEETE+LTNQVLDEIGV VASQLS+APKG+IA+K            +++ SS
Sbjct: 148 ETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESS 207

Query: 171 GIDELEKRLAALR 183
            +DELEKRLA+LR
Sbjct: 208 EVDELEKRLASLR 220

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-b PE=2 SV=1

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 121/179 (67%), Gaps = 2/179 (1%)

Query: 6   GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
            AL+++EK+L  EIK+ AKTGN+ A ++LA+QL++LR+Q        +++  ++T T+ M
Sbjct: 33  AALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVM 92

Query: 66  HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
            +   +A  M   +K M A+NK+M+P K  + M+ FQK++ +M+MT EM++DT+DD  D 
Sbjct: 93  SSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDA 152

Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DELEKRLAAL 182
            E EEE++++ NQVLDEIG++++ +++ AP       +T  A S GI  +E+E++L AL
Sbjct: 153 SEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSAAKSKGISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 123/179 (68%), Gaps = 2/179 (1%)

Query: 6   GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
            AL+++E++L  EIK+ AKTGN+ A K+LA+QL++LR+Q        +++  ++T T+ M
Sbjct: 33  AALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVM 92

Query: 66  HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
           ++   +A  M   +K M A+NK+M+P K  + M+ FQK++ +M+MT EM++DT+DD  D 
Sbjct: 93  NSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDA 152

Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKGK--IASKNTEDASSSGIDELEKRLAAL 182
            + EEE++++ NQVLDEIG++++ +++ AP     + S +T  AS+   +E+E++L AL
Sbjct: 153 SDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 121/179 (67%), Gaps = 2/179 (1%)

Query: 6   GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
            AL+++EK+L  EIK+ AK GN+ A ++LA+QL++LR+Q        +++  ++T T+ M
Sbjct: 33  AALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVM 92

Query: 66  HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
            +   +A  M   +K M A+NK+M+P K  + M+ FQK++ +M+MT EM++DT+DD  D 
Sbjct: 93  SSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDA 152

Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DELEKRLAAL 182
            + EEE++++ NQVLDEIG++++ +++ AP       +T  + SSGI  +E+E++L AL
Sbjct: 153 SDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSASKSSGISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-a PE=2 SV=1

 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 120/178 (67%), Gaps = 2/178 (1%)

Query: 7   ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMH 66
           AL+++EK+L  EIK+ AK GN+ A K+LA+QL++LR+Q        +++  ++T T+ M 
Sbjct: 34  ALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMS 93

Query: 67  AHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND 126
           +   +A  M   +K M A+NK+M+P K  + M+ FQK++ +M+MT EM++DT+DD  D  
Sbjct: 94  SQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDAS 153

Query: 127 EAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DELEKRLAAL 182
           E EEE++++ NQVLDEIG++++ +++ AP       +   + S+GI  +E+E++L AL
Sbjct: 154 EDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSASASKSTGISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 122/178 (68%), Gaps = 2/178 (1%)

Query: 7   ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMH 66
           AL+++EK+L  EIK+ AKTGN  A K+LA+QL+++R+Q        +++  ++T T+ M+
Sbjct: 34  ALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMN 93

Query: 67  AHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND 126
           +   +A  M   +K M A+NK+M+P K  + ++ FQK++A+MDMT EMM+DT+D+  ++ 
Sbjct: 94  SQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDS 153

Query: 127 EAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DELEKRLAAL 182
             EEE++++ NQVLDEIG++++ +++ AP     + +   A + GI  +++E++L AL
Sbjct: 154 GDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAKADGISDEDIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 104/155 (67%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +++E  ALQ +EKK++ +IK+ AK G   + KI+A+ L+R R  I      + Q++ ++ 
Sbjct: 28  IDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSL 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
             Q + +  ++A  MKG +KAM  MN+QM   +  K+M EF++QS +MDM  EMM+DT+D
Sbjct: 88  RIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMD 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
             ++ D  EE+++E+ NQVLDEIG+D+ASQL  AP
Sbjct: 148 QVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAP 182

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 121/179 (67%), Gaps = 3/179 (1%)

Query: 6   GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
            AL+++EK+L  EIK+ AK GN+ A K+LA+QL+ LR+Q        +++  ++T T+ M
Sbjct: 33  AALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVM 92

Query: 66  HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
           ++   +A  M   +K M A+NK+M+P K  + M+ FQK++ +M+MT EM++DT+DD  D 
Sbjct: 93  NSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDG 152

Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLAAL 182
            + EEE++++ NQVLDEIG++++ +++ AP     + S +T  A+ S  +E+E++L AL
Sbjct: 153 SDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Pongo abelii (taxid: 9601)

>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 121/179 (67%), Gaps = 3/179 (1%)

Query: 6   GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
            AL+++EK+L  EIK+ AK GN+ A K+LA+QL+ LR+Q        +++  ++T T+ M
Sbjct: 33  AALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVM 92

Query: 66  HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
           ++   +A  M   +K M A+NK+M+P K  + M+ FQK++ +M+MT EM++DT+DD  D 
Sbjct: 93  NSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDG 152

Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLAAL 182
            + EEE++++ NQVLDEIG++++ +++ AP     + S +T  A+ S  +E+E++L AL
Sbjct: 153 SDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
351724657	212	uncharacterized protein LOC100306343 [Gl	1.0	0.872	0.897	5e-91
224062129	212	predicted protein [Populus trichocarpa]	1.0	0.872	0.891	4e-88
225438079	212	PREDICTED: vacuolar protein sorting-asso	0.994	0.867	0.891	5e-88
18379185	210	vacuolar protein sorting-associated prot	0.989	0.871	0.863	4e-86
351721251	212	uncharacterized protein LOC100499888 [Gl	1.0	0.872	0.891	3e-85
297848616	210	SNF7 family protein [Arabidopsis lyrata	0.989	0.871	0.857	5e-85
224085668	212	predicted protein [Populus trichocarpa]	1.0	0.872	0.902	2e-84
147773859	229	hypothetical protein VITISV_017410 [Viti	0.935	0.755	0.907	1e-83
388517335	212	unknown [Lotus japonicus]	1.0	0.872	0.870	8e-82
4204294	213	Similar to human BC-2 protein [Arabidops	0.956	0.830	0.853	1e-81

>gi|351724657|ref|NP_001237321.1| uncharacterized protein LOC100306343 [Glycine max] gi|255628255|gb|ACU14472.1| unknown [Glycine max]

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 166/185 (89%), Positives = 179/185 (96%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +EKEIGALQ EEKKLVAEIKRTAKTGNE ATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct: 28  IEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLIRLRQQIANLQGSRAQMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHAHSSVAVG+KGA+KAM AMNKQMEPAKQAK++++FQKQSAQMDMTTEMMSD ID
Sbjct: 88  HTQAMHAHSSVAVGLKGATKAMVAMNKQMEPAKQAKIIQDFQKQSAQMDMTTEMMSDAID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DALDNDEA+EETEELTNQVLDEIGVDVASQLSAAPKG++A+KN E+ SSSGIDELEKRLA
Sbjct: 148 DALDNDEAKEETEELTNQVLDEIGVDVASQLSAAPKGRVATKNAENVSSSGIDELEKRLA 207

Query: 181 ALRNP 185
           ALRNP
Sbjct: 208 ALRNP 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062129|ref|XP_002300769.1| predicted protein [Populus trichocarpa] gi|118489303|gb|ABK96456.1| unknown [Populus trichocarpa x Populus deltoides] gi|222842495|gb|EEE80042.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (842), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 165/185 (89%), Positives = 175/185 (94%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +EKEIGALQ EEKKLVAEIKRTAKTGNE ATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct: 28  LEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLIRLRQQIANLQGSRAQMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHA SSVAVG+KGA+KAM A+NKQM PAKQ KV+REFQKQSAQMDMTTEMMSD ID
Sbjct: 88  HTQAMHAQSSVAVGLKGANKAMEAVNKQMAPAKQMKVIREFQKQSAQMDMTTEMMSDAID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DA+D+DEAEEET+ELTNQVLDEIGVDVASQLSAAPKGKIA KN E+ASSSGIDELEKRLA
Sbjct: 148 DAVDSDEAEEETDELTNQVLDEIGVDVASQLSAAPKGKIAGKNRENASSSGIDELEKRLA 207

Query: 181 ALRNP 185
            LRNP
Sbjct: 208 TLRNP 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438079|ref|XP_002276413.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Vitis vinifera] gi|297744171|emb|CBI37141.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (842), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 164/184 (89%), Positives = 175/184 (95%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +EKEIG+LQ EEKKLVAEIKRTAKTGNE ATKILARQL+RLRQQIANLQGSRAQ+RGIAT
Sbjct: 28  IEKEIGSLQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHA++SV+VGMKGASKAMAAMNKQM PAKQAKV++EFQ+QSAQMDMTTEMMSD ID
Sbjct: 88  HTQAMHANTSVSVGMKGASKAMAAMNKQMAPAKQAKVIQEFQRQSAQMDMTTEMMSDAID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DALDNDEAEEETE+LTNQVLDEIGVDVASQLSAAPKGKIA K TED  SSGI ELEKRLA
Sbjct: 148 DALDNDEAEEETEDLTNQVLDEIGVDVASQLSAAPKGKIARKKTEDVGSSGISELEKRLA 207

Query: 181 ALRN 184
           ALRN
Sbjct: 208 ALRN 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18379185|ref|NP_563696.1| vacuolar protein sorting-associated protein 2.3 [Arabidopsis thaliana] gi|75249519|sp|Q941D5.1|VPS2C_ARATH RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 3; Short=AtVPS2-3; AltName: Full=Charged multivesicular body protein 2 homolog 3; AltName: Full=ESCRT-III complex subunit VPS2 homolog 3 gi|15529228|gb|AAK97708.1| At1g03950/F21M11_12 [Arabidopsis thaliana] gi|16974377|gb|AAL31114.1| At1g03950/F21M11_12 [Arabidopsis thaliana] gi|332189516|gb|AEE27637.1| vacuolar protein sorting-associated protein 2.3 [Arabidopsis thaliana]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 158/183 (86%), Positives = 173/183 (94%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +EKEIG+LQ EEKKLV EIKRTAK+GNEGATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct: 28  IEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHAH+SVA GM+GA+KAMAAM+K M+PAKQAKVMREFQKQSAQMDMTTEMMSD+ID
Sbjct: 88  HTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DALDNDEAE+ETE+LTNQVLDEIG+D+ASQLS+APKGKI  K  ED  SSGIDELEKRLA
Sbjct: 148 DALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLA 207

Query: 181 ALR 183
           ALR
Sbjct: 208 ALR 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721251|ref|NP_001237459.1| uncharacterized protein LOC100499888 [Glycine max] gi|255627453|gb|ACU14071.1| unknown [Glycine max]

 Score =  319 bits (817), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 165/185 (89%), Positives = 180/185 (97%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +EKEIGALQ EEKKLVAEIKRTAKTGNE ATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct: 28  IEKEIGALQSEEKKLVAEIKRTAKTGNEAATKILARQLIRLRQQIANLQGSRAQMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHAHSSVAVG+KGA+KAMAAMNK+MEPAKQAK++++FQKQSAQMDMTTEMMSD ID
Sbjct: 88  HTQAMHAHSSVAVGLKGATKAMAAMNKKMEPAKQAKIIQDFQKQSAQMDMTTEMMSDAID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG++A+KN E+ SSSGI+ELEKRLA
Sbjct: 148 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGRVATKNAENDSSSGIEELEKRLA 207

Query: 181 ALRNP 185
           ALR+P
Sbjct: 208 ALRDP 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848616|ref|XP_002892189.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297338031|gb|EFH68448.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/183 (85%), Positives = 172/183 (93%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +EKEIG+LQ EEKKLV EIKRTAK+GNEGATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct: 28  IEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHAH+SVA GM+GA+KAMAAM+K M+PAKQAKVMREFQKQSAQMDMTTEMMSD ID
Sbjct: 88  HTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDAID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DALDNDEAE+ETE+LTNQVLDEIG+D+ASQLS+APKGKI  KN E+  SS IDELEKRLA
Sbjct: 148 DALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKNAENVGSSEIDELEKRLA 207

Query: 181 ALR 183
           ALR
Sbjct: 208 ALR 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085668|ref|XP_002307657.1| predicted protein [Populus trichocarpa] gi|222857106|gb|EEE94653.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/185 (90%), Positives = 174/185 (94%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +E+EIGALQ EEKKLVAEIKRTAKTGN+ ATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct: 28  IEREIGALQLEEKKLVAEIKRTAKTGNDAATKILARQLIRLRQQIANLQGSRAQMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHA SSVAVG+KGASKAM AMNKQM PAKQ KV+REFQKQSAQMDMTTEMMSD ID
Sbjct: 88  HTQAMHAQSSVAVGLKGASKAMEAMNKQMAPAKQMKVIREFQKQSAQMDMTTEMMSDAID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DALDNDEAEEETEELTNQVLDEIGVDVASQLS APKGKI  KN EDASSSGIDELEKRLA
Sbjct: 148 DALDNDEAEEETEELTNQVLDEIGVDVASQLSVAPKGKITGKNREDASSSGIDELEKRLA 207

Query: 181 ALRNP 185
           A+RNP
Sbjct: 208 AMRNP 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773859|emb|CAN63017.1| hypothetical protein VITISV_017410 [Vitis vinifera]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 157/173 (90%), Positives = 165/173 (95%)

Query: 12  EKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSV 71
           EKKLVAEIKRTAKTGNE ATKILARQL+RLRQQIANLQGSRAQ+RGIATHTQAMHA++SV
Sbjct: 56  EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHANTSV 115

Query: 72  AVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEE 131
           AVGMKGASKAMAAMNKQM PAKQAKV++EFQ+QSAQMDMTTEMMSD IDDALDNDEAEEE
Sbjct: 116 AVGMKGASKAMAAMNKQMAPAKQAKVIQEFQRQSAQMDMTTEMMSDAIDDALDNDEAEEE 175

Query: 132 TEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
           TE+LTNQVLDEIGVDVASQLSAAPKGKIA K TED  SSGI ELEKRLAALRN
Sbjct: 176 TEDLTNQVLDEIGVDVASQLSAAPKGKIARKKTEDVGSSGISELEKRLAALRN 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517335|gb|AFK46729.1| unknown [Lotus japonicus]

 Score =  308 bits (788), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 161/185 (87%), Positives = 177/185 (95%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +E+EIG+LQ EEKKLVAEIKRTAK GNE ATK LARQL+RLRQQIANLQGSRA++RGIAT
Sbjct: 28  IEREIGSLQLEEKKLVAEIKRTAKIGNEAATKTLARQLVRLRQQIANLQGSRARMRGIAT 87

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           HTQAMHAHSSVAVGMKGASKA+AAMNKQM+PAKQAKVM EFQKQSAQMDMTTEMMSD ID
Sbjct: 88  HTQAMHAHSSVAVGMKGASKAVAAMNKQMDPAKQAKVMLEFQKQSAQMDMTTEMMSDAID 147

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
           DA+DNDEAEEET+ELTNQVLDEIGVDVASQLS APKG++++KNTE+ SSSGID+LEKRLA
Sbjct: 148 DAIDNDEAEEETDELTNQVLDEIGVDVASQLSTAPKGRVSTKNTENVSSSGIDDLEKRLA 207

Query: 181 ALRNP 185
           ALRNP
Sbjct: 208 ALRNP 212

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4204294|gb|AAD10675.1| Similar to human BC-2 protein [Arabidopsis thaliana]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/177 (85%), Positives = 166/177 (93%)

Query: 7   ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMH 66
           ++ Q EKKLV EIKRTAK+GNEGATKILARQLIRLRQQIANLQGSRAQ+RGIATHTQAMH
Sbjct: 37  SVAQLEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMH 96

Query: 67  AHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND 126
           AH+SVA GM+GA+KAMAAM+K M+PAKQAKVMREFQKQSAQMDMTTEMMSD+IDDALDND
Sbjct: 97  AHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDND 156

Query: 127 EAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALR 183
           EAE+ETE+LTNQVLDEIG+D+ASQLS+APKGKI  K  ED  SSGIDELEKRLAALR
Sbjct: 157 EAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLAALR 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2024107	210	VPS2.3 "vacuolar protein sorti	0.989	0.871	0.710	5.5e-61
TAIR|locus:2163396	222	VPS2.2 [Arabidopsis thaliana (	0.989	0.824	0.569	2.9e-48
UNIPROTKB|F1NR65	214	CHMP2B "Charged multivesicular	0.972	0.841	0.313	4.2e-24
ZFIN|ZDB-GENE-040426-2539	263	chmp2bb "chromatin modifying p	0.951	0.669	0.325	5.3e-24
UNIPROTKB|Q5F3A2	214	CHMP2B "Charged multivesicular	0.972	0.841	0.307	8.7e-24
TAIR|locus:2054612	225	VPS2.1 [Arabidopsis thaliana (	0.989	0.813	0.340	4.8e-23
UNIPROTKB|Q9UQN3	213	CHMP2B "Charged multivesicular	0.967	0.840	0.307	1.3e-22
UNIPROTKB|E2R417	213	CHMP2B "Uncharacterized protei	0.967	0.840	0.302	2.6e-22
UNIPROTKB|F2Z5Q1	213	CHMP2B "Uncharacterized protei	0.967	0.840	0.302	2.6e-22
MGI|MGI:1916192	213	Chmp2b "charged multivesicular	0.967	0.840	0.302	2.6e-22

TAIR|locus:2024107 VPS2.3 "vacuolar protein sorting-associated protein 2.3" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 130/183 (71%), Positives = 140/183 (76%)

Query:     1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
             +EKEIG+LQ EEKKLV EIKRTAK+GNEGATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct:    28 IEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIAT 87

Query:    61 HTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIX 120
             HTQAMHAH+SV                 M+PAKQAKVMREFQKQSAQMDMTTEMMSD+I 
Sbjct:    88 HTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147

Query:   121 XXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
                              QVLDEIG+D+ASQLS+APKGKI  K  ED  SSGIDELEKRLA
Sbjct:   148 DALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLA 207

Query:   181 ALR 183
             ALR
Sbjct:   208 ALR 210

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

TAIR|locus:2163396 VPS2.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 110/193 (56%), Positives = 134/193 (69%)

Query:     1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
             +E+EI +LQ EEK+LVAEIK+TAKTGNE ATKILARQL+RLRQQI NLQGSRAQIRG+ T
Sbjct:    28 IEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTT 87

Query:    61 HTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIX 120
             HTQA++A +S+                QM P KQAKV+++FQKQSAQ+DMT EMMS+ I 
Sbjct:    88 HTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAID 147

Query:   121 XXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASKNT----------EDASSS 170
                              QVLDEIGV VASQLS+APKG+IA+K            +++ SS
Sbjct:   148 ETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESS 207

Query:   171 GIDELEKRLAALR 183
              +DELEKRLA+LR
Sbjct:   208 EVDELEKRLASLR 220

GO:0005634 "nucleus" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|F1NR65 CHMP2B "Charged multivesicular body protein 2b" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 57/182 (31%), Positives = 104/182 (57%)

Query:     3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT 62
             ++  AL+++EK+L  EIK+ AKTGN+ A K+LA+QL++LR+Q        +++  ++T T
Sbjct:    30 RDRAALEKQEKQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQT 89

Query:    63 QAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXX 122
             + M++   +                +M+P K  + M+ FQK++ +M+MT EM++DT+   
Sbjct:    90 KVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDI 149

Query:   123 XXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGK--IASKNTEDASSSGIDELEKRLA 180
                            QVLDEIG++++ +++ AP     + S +T  AS+   +E+E++L 
Sbjct:   150 FDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTISDEEIERQLK 209

Query:   181 AL 182
             AL
Sbjct:   210 AL 211

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2539 chmp2bb "chromatin modifying protein 2Bb" [Danio rerio (taxid:7955)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 58/178 (32%), Positives = 101/178 (56%)

Query:     7 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMH 66
             AL+++EK+L  EIK+ AKTGN  A K+LA+QL+++R+Q        +++  ++T T+ M+
Sbjct:    83 ALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMN 142

Query:    67 AHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXX 126
             +   +                +M+P K  + ++ FQK++A+MDMT EMM+DT+       
Sbjct:   143 SQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDS 202

Query:   127 XXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI-DE-LEKRLAAL 182
                        QVLDEIG++++ +++ AP     + +   A + GI DE +E++L AL
Sbjct:   203 GDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAKADGISDEDIERQLKAL 260

GO:0015031 "protein transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|Q5F3A2 CHMP2B "Charged multivesicular body protein 2b" [Gallus gallus (taxid:9031)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 56/182 (30%), Positives = 104/182 (57%)

Query:     3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT 62
             ++  AL+++E++L  EIK+ AKTGN+ A K+LA+QL++LR+Q        +++  ++T T
Sbjct:    30 RDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQT 89

Query:    63 QAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXX 122
             + M++   +                +M+P K  + M+ FQK++ +M+MT EM++DT+   
Sbjct:    90 KVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDI 149

Query:   123 XXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGK--IASKNTEDASSSGIDELEKRLA 180
                            QVLDEIG++++ +++ AP     + S +T  AS+   +E+E++L 
Sbjct:   150 FDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTISDEEIERQLK 209

Query:   181 AL 182
             AL
Sbjct:   210 AL 211

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

TAIR|locus:2054612 VPS2.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 66/194 (34%), Positives = 100/194 (51%)

Query:     1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
             +E+E   LQ +EKKL+ EIK+TAK G  GA K++A+ LIR R QI      ++Q++G++ 
Sbjct:    30 IERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSL 89

Query:    61 HTQAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIX 120
               Q + +  ++                QM      K+M+EF++Q+ +M+M +E+M D I 
Sbjct:    90 RIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAID 149

Query:   121 XXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIA---SKN-------TEDASSS 170
                              QVLDEIG+D+  +L  AP G +A   +KN       T    S 
Sbjct:   150 DALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSG 209

Query:   171 GID-ELEKRLAALR 183
             GID +L+ RL  LR
Sbjct:   210 GIDSDLQARLDNLR 223

GO:0015031 "protein transport" evidence=IEA;IMP

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005771 "multivesicular body" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|Q9UQN3 CHMP2B "Charged multivesicular body protein 2b" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 56/182 (30%), Positives = 102/182 (56%)

Query:     3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT 62
             ++  AL+++EK+L  EIK+ AK GN+ A K+LA+QL+ LR+Q        +++  ++T T
Sbjct:    30 RDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQT 89

Query:    63 QAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXX 122
             + M++   +                +M+P K  + M+ FQK++ +M+MT EM++DT+   
Sbjct:    90 KVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDI 149

Query:   123 XXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLA 180
                            QVLDEIG++++ +++ AP     + S +T  A+ S  +E+E++L 
Sbjct:   150 FDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLK 208

Query:   181 AL 182
             AL
Sbjct:   209 AL 210

GO:0008219 "cell death" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E2R417 CHMP2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/182 (30%), Positives = 102/182 (56%)

Query:     3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT 62
             ++  AL+++EK+L  EIK+ AK GN+ A ++LA+QL+ LR+Q        +++  ++T T
Sbjct:    30 RDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQT 89

Query:    63 QAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXX 122
             + M++   +                +M+P K  + M+ FQK++ +M+MT EM++DT+   
Sbjct:    90 KVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDI 149

Query:   123 XXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLA 180
                            QVLDEIG++++ +++ AP     + S +T  A+ S  +E+E++L 
Sbjct:   150 FDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLK 208

Query:   181 AL 182
             AL
Sbjct:   209 AL 210

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F2Z5Q1 CHMP2B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/182 (30%), Positives = 102/182 (56%)

Query:     3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT 62
             ++  AL+++EK+L  EIK+ AK GN+ A ++LA+QL+ LR+Q        +++  ++T T
Sbjct:    30 RDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQT 89

Query:    63 QAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXX 122
             + M++   +                +M+P K  + M+ FQK++ +M+MT EM++DT+   
Sbjct:    90 KVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDI 149

Query:   123 XXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLA 180
                            QVLDEIG++++ +++ AP     + S +T  A+ S  +E+E++L 
Sbjct:   150 FDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLK 208

Query:   181 AL 182
             AL
Sbjct:   209 AL 210

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1916192 Chmp2b "charged multivesicular body protein 2B" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/182 (30%), Positives = 102/182 (56%)

Query:     3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT 62
             ++  AL+++EK+L  EIK+ AK GN+ A ++LA+QL+ LR+Q        +++  ++T T
Sbjct:    30 RDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQT 89

Query:    63 QAMHAHSSVXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXX 122
             + M++   +                +M+P K  + M+ FQK++ +M+MT EM++DT+   
Sbjct:    90 KVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDI 149

Query:   123 XXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLA 180
                            QVLDEIG++++ +++ AP     + S +T  A+ S  +E+E++L 
Sbjct:   150 FDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLK 208

Query:   181 AL 182
             AL
Sbjct:   209 AL 210

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NXD2	CHM2B_DANRE	No assigned EC number	0.3820	0.9513	0.8224	yes	no
Q0WTY4	VPS2B_ARATH	No assigned EC number	0.7046	0.9891	0.8243	no	no
Q941D5	VPS2C_ARATH	No assigned EC number	0.8633	0.9891	0.8714	yes	no
Q5RAV2	CHM2B_PONAB	No assigned EC number	0.3910	0.9513	0.8262	yes	no
Q6NVL7	CHM2B_XENTR	No assigned EC number	0.3910	0.9567	0.8271	yes	no
Q9UQN3	CHM2B_HUMAN	No assigned EC number	0.3910	0.9513	0.8262	yes	no
Q5F3A2	CHM2B_CHICK	No assigned EC number	0.3910	0.9567	0.8271	yes	no
Q3SX42	CHM2B_BOVIN	No assigned EC number	0.3812	0.9405	0.8169	yes	no
Q8BJF9	CHM2B_MOUSE	No assigned EC number	0.3854	0.9513	0.8262	yes	no
O14177	DID4_SCHPO	No assigned EC number	0.3611	0.9567	0.8428	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
pfam03357	169	pfam03357, Snf7, Snf7	1e-34
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	3e-05
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	3e-04

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  119 bits (300), Expect = 1e-34
 Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           ++K+  +L+++ KKL AEIK+ AK GN+ A  IL +Q  R  +Q+  L G  A +  +  
Sbjct: 13  LDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLDGQLANLEQVRM 72

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
             +    +  V   MKG +KAM AMNK M+  K   +M E + Q  + D  +EM+SDT+D
Sbjct: 73  AIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTLD 132

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKI 159
           DA  ++E EEE +   + +LDEIG +   +L +AP G +
Sbjct: 133 DA--DEEDEEELDAELDALLDEIGDEELVELPSAPSGAL 169

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 8   LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR--QQIANLQGSRAQIRGIATHTQAM 65
           L+++ KKLV E+K+ AK G     +I  +   R R  +++  L+ +R+++    +  Q++
Sbjct: 5   LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSL 64

Query: 66  HAHSSVAVGMKGASKAMAAMNKQM-EPAKQAKVMREFQKQSAQMDMTT---EMMSDTIDD 121
                  V M+  S  MA     M E     ++M+ F+ Q   +++     E M + +D 
Sbjct: 65  DTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDV 124

Query: 122 ALDNDEAE--EETEELTNQVLDEIGVDVASQLSAAP 155
            + +   E  EE +EL N+VL EIG+++     + P
Sbjct: 125 VVGDPVLEDLEELDELVNKVLPEIGLELDESEQSLP 160

Length = 204

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 29/142 (20%), Positives = 66/142 (46%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           +EK+   ++++ K+L  E K+  +       KIL ++     Q+I N+  +R  +     
Sbjct: 39  LEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
           + + MH H      +  A+     +N ++   K  K++   Q+     +   + +S  + 
Sbjct: 99  NLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL 158

Query: 121 DALDNDEAEEETEELTNQVLDE 142
           + +D+DE ++E + L  Q ++E
Sbjct: 159 NNVDDDEIDKELDLLKEQTMEE 180

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	100.0
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	100.0
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	100.0
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.91
KOG1656	221	consensus Protein involved in glucose derepression	99.66
PTZ00464	211	SNF-7-like protein; Provisional	99.64
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.62
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.3
KOG2910	209	consensus Uncharacterized conserved protein predic	99.08
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.02
COG5491	204	VPS24 Conserved protein implicated in secretion [C	98.34
KOG1655	218	consensus Protein involved in vacuolar protein sor	98.31
PRK10698	222	phage shock protein PspA; Provisional	97.6
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	97.26
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.14
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.1
PTZ00464	211	SNF-7-like protein; Provisional	96.84
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	96.81
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	96.16
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	95.88
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.28
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	95.23
KOG1656	221	consensus Protein involved in glucose derepression	95.18
KOG2910	209	consensus Uncharacterized conserved protein predic	94.49
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	94.28
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	94.12
KOG1655	218	consensus Protein involved in vacuolar protein sor	82.68

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-48  Score=302.86  Aligned_cols=184  Identities=51%  Similarity=0.704  Sum_probs=170.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK   80 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~   80 (185)
                      ||||+.+++-++||+..+||+.+|.|+++++||+|++|||+|+++.+|+.+++||.+|+.++++.+++..|+++|+++|+
T Consensus        28 leRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTk  107 (224)
T KOG3230|consen   28 LERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATK  107 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCCC
Q 029928           81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIA  160 (185)
Q Consensus        81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~~  160 (185)
                      +|..||+.||||+++++|++|++|.+.|++.+|||+|++|++++++++|||+|++|+|||||+|++++.+|.++|+...+
T Consensus       108 am~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~~~~~  187 (224)
T KOG3230|consen  108 AMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPSAAGS  187 (224)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcccccc
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999983221


Q ss_pred             C--------CCc----ccCCCccHHHHHHHHHhhcC
Q 029928          161 S--------KNT----EDASSSGIDELEKRLAALRN  184 (185)
Q Consensus       161 ~--------~~~----~~~~~~~~d~l~~RL~~Lr~  184 (185)
                      .        +++    .+.....+|+|++||++||.
T Consensus       188 ~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk  223 (224)
T KOG3230|consen  188 LPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRK  223 (224)
T ss_pred             cchhhccCCccccccccccCCCchhHHHHHHHHHhc
Confidence            1        111    11123458999999999996

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-41  Score=258.51  Aligned_cols=182  Identities=26%  Similarity=0.393  Sum_probs=165.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK   80 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~   80 (185)
                      |.|+.++|+++||..+.++|+|+++||++.|||||.++||++++..+|+++++++++|.+|++++.+|.+++.+|.++++
T Consensus        21 L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK  100 (203)
T KOG3232|consen   21 LQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVK  100 (203)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCCC
Q 029928           81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIA  160 (185)
Q Consensus        81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~~  160 (185)
                      .|.+..+.|||++|+.+|+.|+++|+++++..++|+++|.+++.-+.|.+++|.|+.+|+||+|++++..||....+..+
T Consensus       101 ~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~  180 (203)
T KOG3232|consen  101 SMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAIS  180 (203)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcC
Confidence            99999999999999999999999999999999999999999888888999999999999999999999988753222222


Q ss_pred             CCCcccCCCccHHHHHHHHHhhcC
Q 029928          161 SKNTEDASSSGIDELEKRLAALRN  184 (185)
Q Consensus       161 ~~~~~~~~~~~~d~l~~RL~~Lr~  184 (185)
                      .+  ++....++|+|.+||++||+
T Consensus       181 ~~--t~~~~~e~d~L~qRLaaLR~  202 (203)
T KOG3232|consen  181 VK--TSAVVDEEDDLTQRLAALRA  202 (203)
T ss_pred             CC--CccccchhhHHHHHHHHHhc
Confidence            21  11222344999999999996

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5e-41  Score=264.65  Aligned_cols=184  Identities=27%  Similarity=0.447  Sum_probs=165.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK   80 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~   80 (185)
                      |||+++.++++++|.+..||+++|+||..+||+|||++|+.|+++.++|.++|||+||.++|..+.++..+.++|++||.
T Consensus        30 ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkSte  109 (227)
T KOG3229|consen   30 LDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTE  109 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCC-
Q 029928           81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKI-  159 (185)
Q Consensus        81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~-  159 (185)
                      +|+.||+++.+|+|..||.+|++|+++.||++||++|+|+++.|+.+.++++|++|++||.+|+.+-.+.+|.+|.... 
T Consensus       110 vMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p~a~~~~~~  189 (227)
T KOG3229|consen  110 VMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAPLAVTATLA  189 (227)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCCcchHHHHh
Confidence            9999999999999999999999999999999999999999999888899999999999999999877777776665431 


Q ss_pred             --CCCCc-c-----c-----CCCccHHHHHHHHHhhcC
Q 029928          160 --ASKNT-E-----D-----ASSSGIDELEKRLAALRN  184 (185)
Q Consensus       160 --~~~~~-~-----~-----~~~~~~d~l~~RL~~Lr~  184 (185)
                        +.... +     .     ..++++.+++.||++||+
T Consensus       190 ~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs  227 (227)
T KOG3229|consen  190 AVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS  227 (227)
T ss_pred             cCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence              11100 0     0     011346889999999996

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-39  Score=248.44  Aligned_cols=182  Identities=38%  Similarity=0.637  Sum_probs=170.3

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK   80 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~   80 (185)
                      |+|++++++++|++|+.+||+.++.||.++||+|||+||..|||..+-+.+.+++.+++.|-..+.++.+++++|...++
T Consensus        27 ierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaK  106 (208)
T KOG3231|consen   27 IERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAK  106 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCCC
Q 029928           81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIA  160 (185)
Q Consensus        81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~~  160 (185)
                      .|+.||+.|+|+++..+|.+|++..++|++++|||+|++|+.+|..++++|.+.+|+||||||||++++++.++|+....
T Consensus       107 TM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~~P~a~s~  186 (208)
T KOG3231|consen  107 TMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAKAPSARSL  186 (208)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhccCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999974332


Q ss_pred             CCCcccCCCccHHHHHHHHHhhcC
Q 029928          161 SKNTEDASSSGIDELEKRLAALRN  184 (185)
Q Consensus       161 ~~~~~~~~~~~~d~l~~RL~~Lr~  184 (185)
                      +..  ......++|+++.|++||+
T Consensus       187 ~~~--st~kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  187 PSA--STSKATISDIERQLAALRS  208 (208)
T ss_pred             Ccc--ccCCCcHHHHHHHHHHhcC
Confidence            211  2234678999999999985

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.91  E-value=6e-25  Score=171.33  Aligned_cols=156  Identities=30%  Similarity=0.450  Sum_probs=125.7

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK   80 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~   80 (185)
                      |+|++.+|+.+.+++..+||+++++|+...|++|++..++.+++..+++.+..+|+++..+|+++..+..+..+|+.+++
T Consensus        13 L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~   92 (171)
T PF03357_consen   13 LEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSK   92 (171)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchh--hhhcccCCCCC
Q 029928           81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV--ASQLSAAPKGK  158 (185)
Q Consensus        81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~--~~~l~~~P~~~  158 (185)
                      +|+.+|+.++++++..+|++|..+++.++.++++|++.++..  +++++++++++++++++|++.+.  ...||++|++.
T Consensus        93 ~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~~~~~lp~~P~~~  170 (171)
T PF03357_consen   93 ALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEEEKQQLPSVPSTE  170 (171)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--SS-SS---HH-
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhhccccCCcCCCCC
Confidence            999999999999999999999999999999999999988764  33457789999999999999988  78888888764

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.9e-14  Score=113.02  Aligned_cols=156  Identities=24%  Similarity=0.290  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 029928            6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIR-LRQQIANLQGSRAQIRGIATH---TQAMHAHSSVAVGMKGASKA   81 (185)
Q Consensus         6 ~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr-~rk~~~~l~~~~aql~sv~~~---l~~~~s~~~~~~~m~~~~~~   81 (185)
                      +|-+--++++..++...+++.-... |..|-++++ +|.+..+|.+.-.-|..+..|   |+++..+..+..+|+..+++
T Consensus        35 KKqe~Le~ki~~e~e~~A~k~~tkN-KR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~A  113 (221)
T KOG1656|consen   35 KKQEFLEKKIEQEVENNARKYGTKN-KRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKA  113 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            4556667777788787666665554 445555554 555555565555555555555   56888899999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhc--ccccchhhHHHHHHHHHHHHHHhcchhh---hhcccCCC
Q 029928           82 MAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID--DALDNDEAEEETEELTNQVLDEIGVDVA---SQLSAAPK  156 (185)
Q Consensus        82 m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~--~~~~~~~~eee~d~lv~qvl~E~~~~~~---~~l~~~P~  156 (185)
                      |+.+++.||+.+|..+|+++..|.+.+.-+++.|+..++  ..+|+++...|.|+|-+..++.-.+++.   ..||++|+
T Consensus       114 mK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs  193 (221)
T KOG1656|consen  114 MKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS  193 (221)
T ss_pred             HHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence            999999999999999999999999999999999999986  3488888888888888888887766543   25777887


Q ss_pred             CCCCCC
Q 029928          157 GKIASK  162 (185)
Q Consensus       157 ~~~~~~  162 (185)
                      +.+|..
T Consensus       194 ~~lPa~  199 (221)
T KOG1656|consen  194 IALPAK  199 (221)
T ss_pred             cccCcc
Confidence            777643

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.64  E-value=5.8e-14  Score=113.86  Aligned_cols=135  Identities=20%  Similarity=0.223  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029928           30 ATKILARQLIRLRQ----QIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQS  105 (185)
Q Consensus        30 ~ari~Ak~lvr~rk----~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~  105 (185)
                      +.|..|..++|.||    +..++......|+.+...|+++..+..+..+|+.++++|+.+|+.|++.+|..+|+++..++
T Consensus        58 ~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~  137 (211)
T PTZ00464         58 RHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLY  137 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            35888999999888    34457778888899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHhhhhhc--ccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCCCCCCc
Q 029928          106 AQMDMTTEMMSDTID--DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNT  164 (185)
Q Consensus       106 ~~~~i~~e~m~d~~~--~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~~~~~~  164 (185)
                      +..+-++++++..++  +.+|+++.++|.++|...+..|.....-+..|++|+..+|..+.
T Consensus       138 e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~~~~  198 (211)
T PTZ00464        138 EDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEADASYLADALAVPGTKLPDVPT  198 (211)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccchhhhccccCCCCCCCCCCC
Confidence            999999999998764  34565666666666666655544444446678888888765443

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.62  E-value=4.3e-14  Score=113.40  Aligned_cols=177  Identities=23%  Similarity=0.292  Sum_probs=118.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            2 EKEIGALQQEEKKLVAEIKRTAKTG--NEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGAS   79 (185)
Q Consensus         2 dRe~~kle~ee~k~~~~ik~aakkg--~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~   79 (185)
                      +|++.++-.+.+...+....+.++-  .....+++++.+++.|++..|+...+++|+++.       ++....-+|..++
T Consensus         6 ~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~-------~~~~e~~~m~~v~   78 (204)
T COG5491           6 ERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLD-------TMLFEKVVMRQVS   78 (204)
T ss_pred             HHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence            5666666666666666665555443  344567777777776666655555555555544       4445555566666


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhhhH---HHhhhhhccccc--chhhHHHHHHHHHHHHHHhcchhhhhccc
Q 029928           80 KAMAAMNKQME-PAKQAKVMREFQKQSAQMDMTT---EMMSDTIDDALD--NDEAEEETEELTNQVLDEIGVDVASQLSA  153 (185)
Q Consensus        80 ~~m~~~n~~~~-~~~l~~~M~~f~ke~~~~~i~~---e~m~d~~~~~~~--~~~~eee~d~lv~qvl~E~~~~~~~~l~~  153 (185)
                      +.|...+..|| ++.|.++|+.|+..+..++...   ++|.+.++.+.+  ..++.+++|+++++|++|+|+++.....+
T Consensus        79 ~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~~  158 (204)
T COG5491          79 GDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQS  158 (204)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhhc
Confidence            66666666677 8899999999999999998888   677776666553  44678899999999999999999855555


Q ss_pred             CCCC-----CCCCCCccc-------CCCccHHHHHHHHHhhcCC
Q 029928          154 APKG-----KIASKNTED-------ASSSGIDELEKRLAALRNP  185 (185)
Q Consensus       154 ~P~~-----~~~~~~~~~-------~~~~~~d~l~~RL~~Lr~~  185 (185)
                      +|..     ..+....++       .+...++.|++||..|+++
T Consensus       159 ~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~~  202 (204)
T COG5491         159 LPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPAL  202 (204)
T ss_pred             chhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhcccc
Confidence            5541     111100111       1123479999999999863

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.30  E-value=7.3e-10  Score=88.50  Aligned_cols=135  Identities=19%  Similarity=0.342  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHHH-------HHHHHcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            4 EIGALQQEEKKLVAEI-------KRTAKTGNEGATKILARQLIRLRQ----QIANLQGSRAQIRGIATHTQAMHAHSSVA   72 (185)
Q Consensus         4 e~~kle~ee~k~~~~i-------k~aakkg~~~~ari~Ak~lvr~rk----~~~~l~~~~aql~sv~~~l~~~~s~~~~~   72 (185)
                      .+..|++.++.+..+|       |+++++|+...    |..++|.||    +..+++.....|+.+...|+.+..+..+.
T Consensus        35 ~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~  110 (191)
T PTZ00446         35 AIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAV  110 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555444       55566666443    777777766    33444455555666667788999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHH
Q 029928           73 VGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE  142 (185)
Q Consensus        73 ~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E  142 (185)
                      .+|+.++++|+.+|+.|++++|..+|+++..+++..+-++++++..+.+..|+++.++|.++|..+-+++
T Consensus       111 ~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~~  180 (191)
T PTZ00446        111 NALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTMEE  180 (191)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999876433456666666766666655544

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=99.08  E-value=7.7e-08  Score=76.00  Aligned_cols=143  Identities=14%  Similarity=0.245  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 029928            6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ-GSRAQIRGIAT---HTQAMHAHSSVAVGMKGASKA   81 (185)
Q Consensus         6 ~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aql~sv~~---~l~~~~s~~~~~~~m~~~~~~   81 (185)
                      +++++.....+...|++++.|..+.|+    -+++++++...|+ +...||..+..   .|.-..-..+|...++..+.+
T Consensus        33 kR~e~~le~Er~~Ar~lird~rKdrAl----llLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~  108 (209)
T KOG2910|consen   33 KRLEKQLEAERQLARDLIRDGRKDRAL----LLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEA  108 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555556666778888888887644    4555555555544 45555555544   444455566789999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCC
Q 029928           82 MAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKI  159 (185)
Q Consensus        82 m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~  159 (185)
                      ++++|+.|++..+.++|++-....+--+-+.+|+++.|.. .|.++..+|.|.+......+      .++|.+|+..+
T Consensus       109 lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dEddi~~EldaLese~~~e------~e~PevPs~ep  179 (209)
T KOG2910|consen  109 LKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDEDDILAELDALESELEVE------AELPEVPSTEP  179 (209)
T ss_pred             HHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHhhhh------hhcCCCCCCCC
Confidence            9999999999999999999999999999999999999884 44444555666665555444      56788888753

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=2.9e-08  Score=87.00  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=130.0

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK   80 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~   80 (185)
                      |.|++..|+.+-++...+++.+.|.|....|..|++.--+.-|...+......+|++|-.++.++.++.-+.++++..+.
T Consensus       245 L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~  324 (439)
T KOG2911|consen  245 LAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSE  324 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHH
Confidence            57899999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCC
Q 029928           81 AMAAMNK-QMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG  157 (185)
Q Consensus        81 ~m~~~n~-~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~  157 (185)
                      +|+.++. ...++++..+|++...-++...-+++.|....-+..|.  .+|+++.++++++.+..-.-+--+|..|+.
T Consensus       325 alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~--~de~lEkEL~~L~~D~~k~e~~~lp~~~~s  400 (439)
T KOG2911|consen  325 ALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDF--EDEDLEKELEDLEADEKKNEDLVLPLNSVS  400 (439)
T ss_pred             HHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCcc--chHHHHHHHHHHHhccccCCccCCCCCCch
Confidence            9999998 56778899999999999999998888888877654443  246666666666655543222334444433

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=98.34  E-value=3.2e-05  Score=62.46  Aligned_cols=134  Identities=19%  Similarity=0.215  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            8 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA--NLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM   85 (185)
Q Consensus         8 le~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~--~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~   85 (185)
                      +++..++....+|.-.++|.....++-.+.-.++|....  ++..+.++|+.+.++|       +....+-.-.-+|..+
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRL-------qs~~~~~~e~~~m~~v   77 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRL-------QSLDTMLFEKVVMRQV   77 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            778888888888888888876655544444445444444  6666666666666654       3556666667788888


Q ss_pred             HhcCCHHHHHHH----HHHHHHHHHHhhhhHHHhh---hhhcccccchh--hHHHHHHHHHHHHHHhcchhh
Q 029928           86 NKQMEPAKQAKV----MREFQKQSAQMDMTTEMMS---DTIDDALDNDE--AEEETEELTNQVLDEIGVDVA  148 (185)
Q Consensus        86 n~~~~~~~l~~~----M~~f~ke~~~~~i~~e~m~---d~~~~~~~~~~--~eee~d~lv~qvl~E~~~~~~  148 (185)
                      .+.+........    +..+.+.|+.+.+.=|.+.   +.+....+...  +..+..+.++..+..+.=+++
T Consensus        78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~  149 (204)
T COG5491          78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIG  149 (204)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhh
Confidence            776444444332    2234455555554445454   34443333333  334444455555544443443

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=8.9e-05  Score=59.10  Aligned_cols=138  Identities=19%  Similarity=0.248  Sum_probs=101.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            2 EKEIGALQQEEKKLVAEIKRTAKTGN-EGATKILARQLIRLRQQI----ANLQGSRAQIRGIATHTQAMHAHSSVAVGMK   76 (185)
Q Consensus         2 dRe~~kle~ee~k~~~~ik~aakkg~-~~~ari~Ak~lvr~rk~~----~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~   76 (185)
                      +.-|.+|+.+=-+++.+|++. +-|. ..+.|.-|-.+++.||..    ..|+.-.=.|+.+....++...+.....+|+
T Consensus        32 e~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK  110 (218)
T KOG1655|consen   32 EKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMK  110 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            556788888888888888887 4453 345666676666666532    3333334445666777777888888899999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHh
Q 029928           77 GASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI  143 (185)
Q Consensus        77 ~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~  143 (185)
                      ...+.|+...+.+++.+|...=+++.--|+..+.++|.+....+...   .++++.+.+++-+.+|.
T Consensus       111 ~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---ide~dL~aELdaL~~E~  174 (218)
T KOG1655|consen  111 DTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---IDEADLDAELDALGQEL  174 (218)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCHHHHHHHHHHHHhHh
Confidence            99999999999999999998888888888888999999888776532   23455555555554444

>PRK10698 phage shock protein PspA; Provisional

Probab=97.60  E-value=0.0062  Score=49.96  Aligned_cols=108  Identities=10%  Similarity=0.212  Sum_probs=75.9

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI-------LARQLIRLRQQIANLQ----GSRAQIRGIATHTQAMHAHS   69 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari-------~Ak~lvr~rk~~~~l~----~~~aql~sv~~~l~~~~s~~   69 (185)
                      ++|++..++....+...+...|+.+|+.+-||-       |+..+-..+.+.....    .++.++..+..+|..+.+-.
T Consensus        57 ~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~  136 (222)
T PRK10698         57 LTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ  136 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468889999999999999999999999999988       8888777766554443    45666666666676666666


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 029928           70 SVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQM  108 (185)
Q Consensus        70 ~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~  108 (185)
                      .+.-+=..++.+...+|..+.--.....|..|++--++.
T Consensus       137 ~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki  175 (222)
T PRK10698        137 QALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRI  175 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            555555566666666666555444456666655544444

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=97.26  E-value=0.054  Score=43.48  Aligned_cols=135  Identities=13%  Similarity=0.046  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQ---------QIANLQGSRAQIRGIATHTQAMHAHSSVAV   73 (185)
Q Consensus         3 Re~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk---------~~~~l~~~~aql~sv~~~l~~~~s~~~~~~   73 (185)
                      +-|-+|......+.++.+..-++  ++.....|+.+++..+         ....|.....++++-...|+.+..+...+.
T Consensus        27 ~AIl~Lk~~~~~L~krq~~Le~k--Ie~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~  104 (191)
T PTZ00446         27 KAILKNREAIDALEKKQVQVEKK--IKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMH  104 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666554433  3334455676665433         233333444555555555666666555555


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhhHHHhhhhhcccccchhhHHHHHHHHHHHHH
Q 029928           74 GMKGASKAMAAMNKQMEPAKQAKVM--REFQKQSAQM---DMTTEMMSDTIDDALDNDEAEEETEELTNQVLD  141 (185)
Q Consensus        74 ~m~~~~~~m~~~n~~~~~~~l~~~M--~~f~ke~~~~---~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~  141 (185)
                      .=..+..+|+..+..  +..+.+-|  ++++.-++.+   --..+-|++++.....++.+++|++++++.+..
T Consensus       105 ~~~ev~~aLk~g~~a--LK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~  175 (191)
T PTZ00446        105 LHKIAVNALSYAANT--HKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE  175 (191)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence            555666677776665  34443322  2333333333   122233445555433233456666666665544

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.14  E-value=0.046  Score=44.34  Aligned_cols=117  Identities=13%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ-----------GSRAQIRGIATHTQAMHAHS   69 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~-----------~~~aql~sv~~~l~~~~s~~   69 (185)
                      |+|++..++....+...+++.|+++|+.+.||-++........+...|.           .++.+|..+..++....+-.
T Consensus        56 le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~  135 (221)
T PF04012_consen   56 LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR  135 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688899999999999999999999999999988888877766555444           34444444555555555444


Q ss_pred             HHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 029928           70 SVAVGMKGASKAMAAMNKQ---MEPAKQAKVMREFQKQSAQMDMTTEMMSD  117 (185)
Q Consensus        70 ~~~~~m~~~~~~m~~~n~~---~~~~~l~~~M~~f~ke~~~~~i~~e~m~d  117 (185)
                      .+..+-..++.+-..++..   +++......+..++.....+.-..+.+.+
T Consensus       136 ~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~e  186 (221)
T PF04012_consen  136 EELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAE  186 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444434444444444433   23333333444444444444333333333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.10  E-value=0.049  Score=44.40  Aligned_cols=107  Identities=10%  Similarity=0.183  Sum_probs=64.7

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQI-----------ANLQGSRAQIRGIATHTQAMHAHS   69 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~-----------~~l~~~~aql~sv~~~l~~~~s~~   69 (185)
                      ++|++..++....+...+.+.|+++|+.+-||-.+..-.....+.           .....++.+|..+..++..+.+..
T Consensus        57 ~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~  136 (219)
T TIGR02977        57 LERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQ  136 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999997776544332222222           222345555555666666666655


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 029928           70 SVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQ  107 (185)
Q Consensus        70 ~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~  107 (185)
                      ...-+=...+.+...+|..+.--.+...+..|++--++
T Consensus       137 ~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       137 KALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            54333344555555555544333344555555554444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PTZ00464 SNF-7-like protein; Provisional

Probab=96.84  E-value=0.2  Score=40.88  Aligned_cols=109  Identities=16%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHh---h
Q 029928           35 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKV--MREFQKQSAQM---D  109 (185)
Q Consensus        35 Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~--M~~f~ke~~~~---~  109 (185)
                      -+-+.+.=+....|.....++.+....|.....+......=..+..+|+..++.  +..+.+-  +++.+.-++.+   -
T Consensus        60 K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~ka--LK~~~k~i~id~Vd~l~Dei~E~~  137 (211)
T PTZ00464         60 KQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKT--LKKQFKKLNVDKVEDLQDELADLY  137 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHH
Confidence            444444555666666667777777777777777666666667777888888877  4445443  33344433333   2


Q ss_pred             hhHHHhhhhhccccc--chhhHHHHHHHHHHHHHHhcc
Q 029928          110 MTTEMMSDTIDDALD--NDEAEEETEELTNQVLDEIGV  145 (185)
Q Consensus       110 i~~e~m~d~~~~~~~--~~~~eee~d~lv~qvl~E~~~  145 (185)
                      -..+=|++++...++  ++.+++|++++++.+..|...
T Consensus       138 e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~  175 (211)
T PTZ00464        138 EDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEK  175 (211)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            333456677777664  356799999999999988643

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=96.81  E-value=0.0034  Score=48.45  Aligned_cols=92  Identities=18%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHH---HHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            2 EKEIGALQQEEKKLVAEIKR---TAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGA   78 (185)
Q Consensus         2 dRe~~kle~ee~k~~~~ik~---aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~   78 (185)
                      ...+.+|++..+++..+|++   -+++--..+-+..|+.+.+.++...   +...++.....+|+........+.....+
T Consensus         7 k~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~---k~~~~~~~~~~~l~~~~~~ie~a~~~~~v   83 (171)
T PF03357_consen    7 KKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLE---KQLEKLLNQLSNLESVLLQIETAQSNQQV   83 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999888874   3444555667888888888776654   45567777888888888888888888888


Q ss_pred             HHHHHHHHhcCCHHHHHHHH
Q 029928           79 SKAMAAMNKQMEPAKQAKVM   98 (185)
Q Consensus        79 ~~~m~~~n~~~~~~~l~~~M   98 (185)
                      ..+|+..++.  +.++.+.|
T Consensus        84 ~~al~~~~~~--Lk~~~~~i  101 (171)
T PF03357_consen   84 VKALKQSSKA--LKKINKQI  101 (171)
T ss_dssp             SSS----SHH--HHHHHHST
T ss_pred             HHHHHHHHHH--HHHHHHhh
Confidence            8888888876  44454443

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.28  Score=39.41  Aligned_cols=106  Identities=14%  Similarity=0.265  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hh
Q 029928           31 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQ-MD  109 (185)
Q Consensus        31 ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~-~~  109 (185)
                      .|-|.+.++..|   .++.....+++++.+.-+-+.+|.-++.+|....+.|.--.    +.+|..-...-+..|+- -.
T Consensus        68 tR~~i~kf~~~k---aqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq----~qkIm~eFekQse~Mdm~~E  140 (224)
T KOG3230|consen   68 TRRYIKKFQNMK---AQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQ----IQKIMQEFEKQSEIMDMKEE  140 (224)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHH----HHHHHHHHHHHHHHHHHHHH
Confidence            455555555444   33444455566666666666666666666665554443221    33333333333333322 24


Q ss_pred             hhHHHhhhhhcccccchhhHHHHHHHHHHHHHHh
Q 029928          110 MTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI  143 (185)
Q Consensus       110 i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~  143 (185)
                      ++.+.|+|+|++.-++++-|+=++.+++.+==.+
T Consensus       141 mm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl  174 (224)
T KOG3230|consen  141 MMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDL  174 (224)
T ss_pred             HHHHHHHHhhcccchhHHHHHHHHHHHHHHcccH
Confidence            4556666666655555555555666655543333

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.75  Score=37.30  Aligned_cols=54  Identities=20%  Similarity=0.394  Sum_probs=39.4

Q ss_pred             HHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhh-hcccCCCC
Q 029928          104 QSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVAS-QLSAAPKG  157 (185)
Q Consensus       104 e~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~-~l~~~P~~  157 (185)
                      +|.+=-++..+|++++++.++..++.+|.++.++.-.+.+--.+.+ .++.+|..
T Consensus       129 elSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p~a  183 (227)
T KOG3229|consen  129 ELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAPLA  183 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCCcc
Confidence            3334456778999999999999888888999999888888766643 34444433

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.28  E-value=1.4  Score=36.32  Aligned_cols=106  Identities=12%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH--
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIAN-----------LQGSRAQIRGIATHTQAMHA--   67 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~-----------l~~~~aql~sv~~~l~~~~s--   67 (185)
                      ++|+..++.....+++.+.+.|+.+|+.+-||-.+...-..-+....           ..+++.++..+..++....+  
T Consensus        57 ~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~  136 (225)
T COG1842          57 LERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK  136 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999988776655544443332222           22444444445544443333  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 029928           68 -HSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMD  109 (185)
Q Consensus        68 -~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~  109 (185)
                       +.....+..+++.-|..+...++.   ...|..|++--++..
T Consensus       137 ~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kie  176 (225)
T COG1842         137 EALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIE  176 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHH
Confidence             333344445555555555555555   555555555554443

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=95.23  E-value=0.048  Score=42.68  Aligned_cols=141  Identities=18%  Similarity=0.200  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 029928            6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK-AMAA   84 (185)
Q Consensus         6 ~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~-~m~~   84 (185)
                      +|-...-++.+++|-..++.|+.+.||+-+.++|+-.+...-|.-+-.-.+-+..++.........-..+..+.. ++-.
T Consensus        16 ~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~p~~l~eAi~siiyA   95 (165)
T PF03398_consen   16 NKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKECPPELKEAISSIIYA   95 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHH
Confidence            455566677889999999999999999999999999999888888888888888777666554433223333322 4444


Q ss_pred             HHhcCCHHHHHHHHHH----HHHHHHHhhhh--HHHhhhhhcccccc-hhhHHHHHHHHHHHHHHhcch
Q 029928           85 MNKQMEPAKQAKVMRE----FQKQSAQMDMT--TEMMSDTIDDALDN-DEAEEETEELTNQVLDEIGVD  146 (185)
Q Consensus        85 ~n~~~~~~~l~~~M~~----f~ke~~~~~i~--~e~m~d~~~~~~~~-~~~eee~d~lv~qvl~E~~~~  146 (185)
                      ..+.-++|++..+=..    |-++|...-+-  ...++.-+-.-+.. .-.++.++..+..|+.|+|++
T Consensus        96 a~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~e~~i~  164 (165)
T PF03398_consen   96 APRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEIAKEYGIP  164 (165)
T ss_dssp             HHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHHHHHCT-S
T ss_pred             hhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHHHHHcCCC
Confidence            4444577777554333    45555332111  11122211111111 112557888888888888874

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.18  E-value=1.4  Score=35.73  Aligned_cols=133  Identities=15%  Similarity=0.146  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            8 LQQEEKKLVAEIKRTAKTGNEGATKILAR----QLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMA   83 (185)
Q Consensus         8 le~ee~k~~~~ik~aakkg~~~~ari~Ak----~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~   83 (185)
                      |.+.+.-++.+|-.-.+.    .||.|+.    -+++.=|...+|.+--+|++++.+.|..+.-+..-++.=..+-.+|+
T Consensus        33 L~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~  108 (221)
T KOG1656|consen   33 LEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMG  108 (221)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHH
Confidence            445555556666555433    2555553    44555567788888999999999999988887777766677777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHhhhhH---HHhhhhhcccccc--hhhHHHHHHHHHHHHHHhc
Q 029928           84 AMNKQMEPAKQAKVMREFQKQSAQMDMTT---EMMSDTIDDALDN--DEAEEETEELTNQVLDEIG  144 (185)
Q Consensus        84 ~~n~~~~~~~l~~~M~~f~ke~~~~~i~~---e~m~d~~~~~~~~--~~~eee~d~lv~qvl~E~~  144 (185)
                      ..-+.|+--.-.--+++...-|++..-..   +-|++++..-++.  +.+++|...+++.+.+|..
T Consensus       109 ~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeel  174 (221)
T KOG1656|consen  109 SAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEEL  174 (221)
T ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHH
Confidence            77777544444444566776676664444   4567778777763  3568888888888877653

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=94.49  E-value=2.1  Score=34.43  Aligned_cols=135  Identities=19%  Similarity=0.158  Sum_probs=81.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 029928            2 EKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIR-LRQQIANLQGS--------RAQIRGIATHTQAMHAHSSVA   72 (185)
Q Consensus         2 dRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr-~rk~~~~l~~~--------~aql~sv~~~l~~~~s~~~~~   72 (185)
                      ||-|-.+..+..|+.+=.|+.-+  ..+.=|.+|++||| .||....|+--        -.|-+.--..|..+.+...++
T Consensus        15 DrAIL~lK~QRdkl~qyqkR~e~--~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft   92 (209)
T KOG2910|consen   15 DRAILSLKTQRDKLKQYQKRLEK--QLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFT   92 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666555554433  34567899999999 46655444422        222333334467777788888


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHhhhhH---HHhhhhhcccccchhhHHHHHHHHHHHHH
Q 029928           73 VGMKGASKAMAAMNKQMEPAKQAKVMRE--FQKQSAQMDMTT---EMMSDTIDDALDNDEAEEETEELTNQVLD  141 (185)
Q Consensus        73 ~~m~~~~~~m~~~n~~~~~~~l~~~M~~--f~ke~~~~~i~~---e~m~d~~~~~~~~~~~eee~d~lv~qvl~  141 (185)
                      ..=+.+..+++.-|..  +.+++..|+-  ..+-|+.-.---   .-+++++...+.. ++++++.++++-+..
T Consensus        93 ~vqk~V~~gLk~GN~~--lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dEddi~~EldaLes  163 (209)
T KOG2910|consen   93 QVQKKVMEGLKQGNEA--LKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDEDDILAELDALES  163 (209)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHH
Confidence            8888888899998887  6667665543  666655553222   2344455555553 345566655555443

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.28  E-value=2.2  Score=33.84  Aligned_cols=88  Identities=22%  Similarity=0.311  Sum_probs=60.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRL-RQQIANLQGS--------RAQIRGIATHTQAMHAHSSV   71 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~-rk~~~~l~~~--------~aql~sv~~~l~~~~s~~~~   71 (185)
                      |+..+..|..-.+.|.+..++|=|--..+.+|  .+-+|.+ ...+.|+|..        .-.+--+++|+....+-.+.
T Consensus         7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K--~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT   84 (203)
T KOG3232|consen    7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAK--LKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT   84 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677777778887777776655445444  4556666 4455555532        22344567889999888888


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 029928           72 AVGMKGASKAMAAMNKQME   90 (185)
Q Consensus        72 ~~~m~~~~~~m~~~n~~~~   90 (185)
                      .-.|.++++.|..+-+.|+
T Consensus        85 avtmr~Vt~sM~gVvK~md  103 (203)
T KOG3232|consen   85 AVTMRKVTKSMAGVVKSMD  103 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8899999999999887754

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.12  E-value=1.4  Score=34.73  Aligned_cols=80  Identities=20%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHHHhhhhHHHhhh
Q 029928           43 QQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM-----REFQKQSAQMDMTTEMMSD  117 (185)
Q Consensus        43 k~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M-----~~f~ke~~~~~i~~e~m~d  117 (185)
                      ||..+|-+-+++--+++++++++....++.+++-+.+.+|+..-+.  ...+.+.|     -+--++|...+++=+|-++
T Consensus        62 KQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKT--M~amNk~M~pek~~~tmr~FQ~anmKMemTeE  139 (208)
T KOG3231|consen   62 KQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKT--MQAMNKKMDPEKTLQTMRNFQKANMKMEMTEE  139 (208)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHH--HHHHHccCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4555555555555666666666666666666665555555544333  12222221     1223455555555566666


Q ss_pred             hhccccc
Q 029928          118 TIDDALD  124 (185)
Q Consensus       118 ~~~~~~~  124 (185)
                      ++++.+|
T Consensus       140 MiNDTLD  146 (208)
T KOG3231|consen  140 MINDTLD  146 (208)
T ss_pred             HHHhhHH
Confidence            5555544

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.68  E-value=24  Score=28.57  Aligned_cols=69  Identities=16%  Similarity=0.183  Sum_probs=38.4

Q ss_pred             HHHHcCChhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 029928           21 RTAKTGNEGATKI-LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHA-HSSVAVGMKGASKAMAAMNKQME   90 (185)
Q Consensus        21 ~aakkg~~~~ari-~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s-~~~~~~~m~~~~~~m~~~n~~~~   90 (185)
                      .-+++=...-++- +-+.++|.=|+...|...+-+|..-+..+..+.- ...+-+++.. ..+|+..|+.|.
T Consensus        47 ~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~T-v~AmK~~~k~mK  117 (218)
T KOG1655|consen   47 DQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQAT-VAAMKDTNKEMK  117 (218)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            3444444455332 2334555667888887777777776666654443 3334444433 446777776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	1e-28
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	1e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  104 bits (261), Expect = 1e-28
 Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 9/193 (4%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           ++++I  +Q+EE+K+   +K  AK G +    +LA+++IR R+ ++ L  S+A +  +  
Sbjct: 26  VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLM 85

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
             +   A   VA  ++ +++ M AM   ++  +    MRE  K+  +  +  EM+ DT +
Sbjct: 86  GMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 145

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP---------KGKIASKNTEDASSSG 171
              D +E EEE E   +++L EI      +  +            G +A+   E+     
Sbjct: 146 SMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEA 205

Query: 172 IDELEKRLAALRN 184
           ++ ++ RLA LR+
Sbjct: 206 LEAMQSRLATLRS 218

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 98.6 bits (245), Expect = 1e-26
 Identities = 40/153 (26%), Positives = 80/153 (52%)

Query: 1   MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
           ++++I  +Q+EE+K+   +K  AK G +    +LA+++IR R+ ++ L  S+A +  +  
Sbjct: 26  VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLM 85

Query: 61  HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
             +   A   VA  ++ +++ M AM   ++  +    MRE  K+  +  +  EM+ DT +
Sbjct: 86  GMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 145

Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSA 153
              D +E EEE E   +++L EI      +  +
Sbjct: 146 SMDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 42/245 (17%), Positives = 68/245 (27%), Gaps = 67/245 (27%)

Query: 6   GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLR---QQIANLQGSRAQ-IRGIATH 61
             L+   K L++ IK   +      T++   Q  RL    Q  A    SR Q    +   
Sbjct: 85  EVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 62  TQAMHAHSSVAV-GMKGASK----AMAAMNKQMEPAKQAKV--------------MREFQ 102
              +    +V + G+ G+ K        ++ +++     K+              +   Q
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 103 KQSAQMDMTTEMMSDTIDDA-LDNDEAEEETEELTNQ--------VLDEI---------- 143
           K   Q+D      SD   +  L     + E   L           VL  +          
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 144 ----------GVDVASQLSAAPKGKIASKN-----TEDAS--------SSGIDELEKRLA 180
                        V   LSAA    I+  +     T D               +L  R  
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREV 322

Query: 181 ALRNP 185
              NP
Sbjct: 323 LTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	99.03
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	98.26
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	98.15
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	96.83
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	96.39
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	94.92
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	94.82
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	93.78
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	93.09
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	80.88

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-49  Score=319.48  Aligned_cols=181  Identities=27%  Similarity=0.434  Sum_probs=122.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK   80 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~   80 (185)
                      |||++++|+++|++++.+||+++|+||+++|||||+++||+|+++.+||.+++||++|+++|++++++.+|+++|+++++
T Consensus        26 LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~  105 (218)
T 3frt_A           26 VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTE  105 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCC---
Q 029928           81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG---  157 (185)
Q Consensus        81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~---  157 (185)
                      +|+.+|++||+|+|+.+|++|++||+++||+++||+|+|+++++++++++|+|++|+|||+|+|.   ++|+.+|++   
T Consensus       106 ~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~---~~l~~~p~~~~~  182 (218)
T 3frt_A          106 VMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA---GALGKAPSKVTD  182 (218)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC-----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhH---hHhhcCCCCCCC
Confidence            99999999999999999999999999999999999999999888888899999999999999995   455555543   


Q ss_pred             CCCCCCc------c---cCCCccHHHHHHHHHhhcC
Q 029928          158 KIASKNT------E---DASSSGIDELEKRLAALRN  184 (185)
Q Consensus       158 ~~~~~~~------~---~~~~~~~d~l~~RL~~Lr~  184 (185)
                      .+|.+..      +   +..++++++|+.||++||+
T Consensus       183 ~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          183 ALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             ------------------------------------
T ss_pred             CCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence            2332111      0   1112346889999999996

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=8.9e-41  Score=263.68  Aligned_cols=154  Identities=28%  Similarity=0.426  Sum_probs=123.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK   80 (185)
Q Consensus         1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~   80 (185)
                      |||++++|++++++++.+||+++++||.++|||||+++||+|+++.+|+.++++|++|+++|+++.++.+++++|+++++
T Consensus        26 Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~  105 (179)
T 2gd5_A           26 VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTE  105 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCC
Q 029928           81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG  157 (185)
Q Consensus        81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~  157 (185)
                      +|+.+|+.||+|+|+++|++|+++++++|+++++|+|+|+++++++++++++|++|++|++|+|+   ++||.+|++
T Consensus       106 ~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~~---~~l~~~P~~  179 (179)
T 2gd5_A          106 VMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA---GALGKAPSK  179 (179)
T ss_dssp             HHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC--------------
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhhH---hhcccCCCC
Confidence            99999999999999999999999999999999999999999888888899999999999999995   478888763

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=99.03  E-value=8.4e-12  Score=78.07  Aligned_cols=49  Identities=33%  Similarity=0.561  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhcchhhhhcccCCCCCCCCCCcccCCCccHHHHHHHHHhhcC
Q 029928          132 TEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN  184 (185)
Q Consensus       132 ~d~lv~qvl~E~~~~~~~~l~~~P~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~  184 (185)
                      ||+||+||+||+|++++.+|+.+|.+.++.+    ....++|+|.+||++||+
T Consensus         2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~----~~~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            2 VDMLLQEMADEAGLDLNMELPQGQTGSVGTS----VASAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCHHHHHHHHHTTCC---------CHHHHHH----HHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhCchHHhhcccccccccCCC----CCcccHHHHHHHHHHHhC
Confidence            6899999999999999999999887654321    123568999999999995

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=98.26  E-value=5.4e-06  Score=59.18  Aligned_cols=75  Identities=24%  Similarity=0.374  Sum_probs=58.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhc--ccccchhhHHHHHHHHHHHHHHhcchhh----hhcccCCCCCCCC
Q 029928           88 QMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID--DALDNDEAEEETEELTNQVLDEIGVDVA----SQLSAAPKGKIAS  161 (185)
Q Consensus        88 ~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~--~~~~~~~~eee~d~lv~qvl~E~~~~~~----~~l~~~P~~~~~~  161 (185)
                      .|++.+|..+|+++..+++..+-++++++..++  +.+|+++.++|.+.|....+++--++++    ..||++|++.+|.
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp~   81 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPS   81 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCCC
Confidence            589999999999999999999999999999874  3456666677777777777766444333    3589999888764


Q ss_pred             C
Q 029928          162 K  162 (185)
Q Consensus       162 ~  162 (185)
                      .
T Consensus        82 ~   82 (104)
T 3um3_B           82 K   82 (104)
T ss_pred             C
Confidence            3

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=98.15  E-value=7e-07  Score=71.80  Aligned_cols=99  Identities=11%  Similarity=0.218  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhhHHHhhh
Q 029928           43 QQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM--REFQKQSAQM---DMTTEMMSD  117 (185)
Q Consensus        43 k~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M--~~f~ke~~~~---~i~~e~m~d  117 (185)
                      ++..+.-+...+|-.+.++|++.....+..-++..++..|+.+...  +..+...|  .++.+-|.++   -..-+++++
T Consensus        61 kelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eE  138 (218)
T 3frt_A           61 KEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEE  138 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4566667888899999999999999888888889999999888877  45555555  6777766666   334457888


Q ss_pred             hhcccccchhhHHHHHHHHHHHHHHh
Q 029928          118 TIDDALDNDEAEEETEELTNQVLDEI  143 (185)
Q Consensus       118 ~~~~~~~~~~~eee~d~lv~qvl~E~  143 (185)
                      +|++++++...+++.++.++.+++.+
T Consensus       139 mm~Da~d~~~~~~~~eee~d~~v~kV  164 (218)
T 3frt_A          139 MLEDTFESMDDQEEMEEEAEMEIDRI  164 (218)
T ss_dssp             --------------CTTSTTTHHHHH
T ss_pred             HHHHHHhcccccCCchHHHHHHHHHH
Confidence            89998886655555555666665544

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=96.83  E-value=0.00027  Score=54.84  Aligned_cols=136  Identities=13%  Similarity=0.233  Sum_probs=69.5

Q ss_pred             hhhHHHHHHHHHHHHHHHH---HHHHcCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928            2 EKEIGALQQEEKKLVAEIK---RTAKTGNEGATKILARQLIRL-RQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKG   77 (185)
Q Consensus         2 dRe~~kle~ee~k~~~~ik---~aakkg~~~~ari~Ak~lvr~-rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~   77 (185)
                      .+.++.|+++-.++..+-|   ..+|+    +++--..+.+|. =++..+.-+...+|....++|++.....+...++..
T Consensus        20 ~~~~r~Ldr~~~kle~~ekk~~~~Ikk----a~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~   95 (179)
T 2gd5_A           20 RKEMRVVDRQIRDIQREEEKVKRSVKD----AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR   95 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666776666654443   33322    222112223332 234455556778888899999999988888888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHh
Q 029928           78 ASKAMAAMNKQMEPAKQAKVM--REFQKQSAQM---DMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI  143 (185)
Q Consensus        78 ~~~~m~~~n~~~~~~~l~~~M--~~f~ke~~~~---~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~  143 (185)
                      ++.+|+.....  +..+.+.|  +++++-|.++   -..-++++++|++.+++..++++.+++++.+++.+
T Consensus        96 v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV  164 (179)
T 2gd5_A           96 VAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (179)
T ss_dssp             HTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred             HHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            88888777665  34444444  5555555555   44445568899998876655556566666665544

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.00067  Score=42.60  Aligned_cols=14  Identities=36%  Similarity=0.567  Sum_probs=13.0

Q ss_pred             cHHHHHHHHHhhcC
Q 029928          171 GIDELEKRLAALRN  184 (185)
Q Consensus       171 ~~d~l~~RL~~Lr~  184 (185)
                      .+|||++||++||+
T Consensus        39 ~ddDLQARLdsLRR   52 (54)
T 2v6x_B           39 PDDDLQARLNTLKK   52 (54)
T ss_dssp             CCHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHhcc
Confidence            68999999999996

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=94.92  E-value=0.51  Score=36.76  Aligned_cols=137  Identities=12%  Similarity=0.129  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 029928            7 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGA-SKAMAAM   85 (185)
Q Consensus         7 kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~-~~~m~~~   85 (185)
                      |-...-++.+++|-..++.|..+.||+-+.++||-.+...=|.-+---.+-+..++.....+...-..++.+ +.++-..
T Consensus        30 Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~~~k~cp~~l~EAvsslIyAa  109 (191)
T 3frr_A           30 KKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAA  109 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCSSCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhh
Confidence            334455677889999999999999999999999999988888777777777777766665533333333333 3355555


Q ss_pred             Hhc-CCHHHHHHHH----HHHHHHHHHhh-------hhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchh
Q 029928           86 NKQ-MEPAKQAKVM----REFQKQSAQMD-------MTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV  147 (185)
Q Consensus        86 n~~-~~~~~l~~~M----~~f~ke~~~~~-------i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~  147 (185)
                      .+. -++|++..+=    ..|-++|...-       +-..++.- +....   -+.+-++..+..|+.++|++.
T Consensus       110 ~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~k-Ls~~~---P~~~lv~~yL~EIA~~y~V~w  179 (191)
T 3frr_A          110 PRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHK-LSVEA---PPKILVERYLIEIAKNYNVPY  179 (191)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHH-TCCSC---CCHHHHHHHHHHHHHHHTCCC
T ss_pred             hcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHH-cCCCC---cCHHHHHHHHHHHHHHcCCCC
Confidence            664 6888886553    44555555431       11222222 22111   135678888999999998865

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=94.82  E-value=0.71  Score=35.99  Aligned_cols=138  Identities=12%  Similarity=0.090  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 029928            7 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHA--------HSSVAVGMKGA   78 (185)
Q Consensus         7 kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s--------~~~~~~~m~~~   78 (185)
                      |-...-+..+++|-..++.|..+.||+-+.++||-.+...=|.-+---.+-+..++.....        ....-..++.+
T Consensus        29 Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~~~~~e~~~~~k~cp~~l~EA  108 (193)
T 3ggy_A           29 KQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEA  108 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCSHHHHHHHSSSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHH
Confidence            3445556778899999999999999999999999998888777766666666666655544        12222233333


Q ss_pred             -HHHHHHHHhcCCHHHHHHH----HHHHHHHHHHh------hhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchh
Q 029928           79 -SKAMAAMNKQMEPAKQAKV----MREFQKQSAQM------DMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV  147 (185)
Q Consensus        79 -~~~m~~~n~~~~~~~l~~~----M~~f~ke~~~~------~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~  147 (185)
                       +.++-...+..++|++..+    ...|-++|...      |+-..++.- +.....   +.+-++..+..|+.++|++.
T Consensus       109 vsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~~~P---~~elv~~yL~EIA~ey~V~w  184 (193)
T 3ggy_A          109 IRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSPSVP---KEELVDLYLKEIAKTYDVPY  184 (193)
T ss_dssp             HHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSCCCC---CHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCCCCc---CHHHHHHHHHHHHHHcCCCC
Confidence             3344455555788888544    44455665442      333333333 222111   35678899999999999876


Q ss_pred             h
Q 029928          148 A  148 (185)
Q Consensus       148 ~  148 (185)
                      +
T Consensus       185 ~  185 (193)
T 3ggy_A          185 S  185 (193)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=93.78  E-value=0.044  Score=29.60  Aligned_cols=18  Identities=39%  Similarity=0.529  Sum_probs=15.0

Q ss_pred             CCCccHHHHHHHHHhhcC
Q 029928          167 ASSSGIDELEKRLAALRN  184 (185)
Q Consensus       167 ~~~~~~d~l~~RL~~Lr~  184 (185)
                      ..++.+|.|.+||++||+
T Consensus        12 ~~eekEDkLAqRLRALR~   29 (29)
T 3ggz_E           12 VDDEKEDKLAQRLRALRG   29 (29)
T ss_pred             ccchhhHHHHHHHHHHcC
Confidence            345679999999999995

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=93.09  E-value=0.011  Score=34.54  Aligned_cols=14  Identities=36%  Similarity=0.760  Sum_probs=11.8

Q ss_pred             cHHHHHHHHHhhcC
Q 029928          171 GIDELEKRLAALRN  184 (185)
Q Consensus       171 ~~d~l~~RL~~Lr~  184 (185)
                      ++.+|+.||++||+
T Consensus        27 di~~MqsRLaALRS   40 (40)
T 2xze_Q           27 ALEAMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            35679999999996

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=80.88  E-value=1.2  Score=27.95  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHH
Q 029928           89 MEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE  142 (185)
Q Consensus        89 ~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E  142 (185)
                      +|+.+|...+.++.-.++..+-+++.++.+.+-...++.++++.+++++-+-+|
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de   54 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE   54 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence            467788888888888888889899999988664322233466777777665554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00