Citrus Sinensis ID: 030020

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Secondary Structure (PSIPRED)
cHHHHHHHHHcHHHHHHHHHHHccccEEEcccccEEEEcccccEEcccccccccEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHccEEcc
Secondary Structure Prediction (SSPRO)
cccHEEEHHccHHcccccccHccccEEEEcccccEEEEEccccEEEccccccccEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEcccccEcEEEEEEccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mfqlaftacsfPAIVSYALAANEDLRVYTDELNKFeisipqdwqlgagepngfksitafypqeassssVSVVITGlgpdftrmesfgKVEAFADTLVSGldrswrrppgvaaklidckaskgfYYIEYtlqnpgesRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Flexible Loop (DISEMBL)
MFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYpqeassssVSVVITGLGPDFTRMESFGKVEAFADTLVSgldrswrrppgvaaKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEeesekygsniekavasfrfi
Low Complexity Region (SEG)
MFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered region (IsUnstruct)
**QLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQE****SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVE********************
Disordered Region (DISOPRED)
*FQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVS*******************KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISEMBL)
MFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISPRO)
MFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q9S720	247	PsbP domain-containing pr	yes	no	1.0	0.744	0.743	1e-78

>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2

 Score =  292 bits (747), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/187 (74%), Positives = 157/187 (83%), Gaps = 3/187 (1%)

Query: 1   MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
           M Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+G  EPNGFKSIT
Sbjct: 61  MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSIT 120

Query: 58  AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
           AFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID 
Sbjct: 121 AFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 180

Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
           +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES +  S I+K 
Sbjct: 181 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKT 240

Query: 178 VASFRFI 184
           V SFRFI
Sbjct: 241 VKSFRFI 247

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
255539324	264	conserved hypothetical protein [Ricinus	1.0	0.696	0.789	8e-83
449522159	188	PREDICTED: psbP domain-containing protei	1.0	0.978	0.75	3e-79
449458059	257	PREDICTED: psbP domain-containing protei	1.0	0.715	0.744	1e-78
188509930	274	unknown predicted protein [Gossypioides	0.956	0.642	0.791	3e-78
225457650	253	PREDICTED: psbP domain-containing protei	1.0	0.727	0.732	7e-78
21537211	247	thylakoid lumen protein, chloroplast pre	1.0	0.744	0.743	4e-77
18411110	247	PsbP domain-containing protein 3 [Arabid	1.0	0.744	0.743	5e-77
224083366	193	predicted protein [Populus trichocarpa]	0.956	0.911	0.759	4e-76
297839519	225	hypothetical protein ARALYDRAFT_476802 [	1.0	0.817	0.739	2e-75
147809819	247	hypothetical protein VITISV_030793 [Viti	0.956	0.712	0.726	6e-74

>gi|255539324|ref|XP_002510727.1| conserved hypothetical protein [Ricinus communis] gi|223551428|gb|EEF52914.1| conserved hypothetical protein [Ricinus communis]

 Score =  311 bits (797), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 146/185 (78%), Positives = 167/185 (90%), Gaps = 1/185 (0%)

Query: 1   MFQLAFT-ACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAF 59
           +F +AFT   +FP ++S A A  +D R+YTD+ NKF+ISIPQDW++GAGEPNGFKS+TAF
Sbjct: 80  LFSVAFTTGFTFPGLISNAFAEIDDFRLYTDDANKFQISIPQDWRVGAGEPNGFKSVTAF 139

Query: 60  YPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKA 119
           YP+EAS SSVSVVITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+RPPGVAAKLIDCKA
Sbjct: 140 YPEEASGSSVSVVITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQRPPGVAAKLIDCKA 199

Query: 120 SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVA 179
           +KG YYIEYTLQNPGE RKHLFSA+GMA NGWYNRLYTVTGQFVEEESE YGS ++K V+
Sbjct: 200 TKGIYYIEYTLQNPGEGRKHLFSALGMAFNGWYNRLYTVTGQFVEEESENYGSKVQKVVS 259

Query: 180 SFRFI 184
           SF+FI
Sbjct: 260 SFKFI 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522159|ref|XP_004168095.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 141/188 (75%), Positives = 160/188 (85%), Gaps = 4/188 (2%)

Query: 1   MFQLAFTACSFPAIVSYALAAN----EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 56
           M  + FTA SF  +VS ALA +    ED R YTDE NKF + IPQDWQ+G GEPNGFKS+
Sbjct: 1   MLGIGFTAFSFQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 60

Query: 57  TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 116
           TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 61  TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 120

Query: 117 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
           C++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 121 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 180

Query: 177 AVASFRFI 184
            V SF FI
Sbjct: 181 VVNSFAFI 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458059|ref|XP_004146765.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 159/188 (84%), Gaps = 4/188 (2%)

Query: 1   MFQLAFTACSFPAIVSYALAAN----EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 56
           M  + FTA SF  + S ALA +    ED R YTDE NKF + IPQDWQ+G GEPNGFKS+
Sbjct: 70  MLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 129

Query: 57  TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 116
           TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 130 TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 189

Query: 117 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
           C++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 190 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 249

Query: 177 AVASFRFI 184
            V SF FI
Sbjct: 250 VVNSFAFI 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509930|gb|ACD56619.1| unknown predicted protein [Gossypioides kirkii]

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/182 (79%), Positives = 158/182 (86%), Gaps = 6/182 (3%)

Query: 1   MFQLAFTACSFPA-IVSYALAANE-----DLRVYTDELNKFEISIPQDWQLGAGEPNGFK 54
           + Q    A SFP  I+S A+A  E     D RVYTDE NKF+I IPQDWQ+GAGEPN FK
Sbjct: 63  ILQAPLIAFSFPQLIMSTAIAVAEIDVPQDFRVYTDEQNKFKIFIPQDWQVGAGEPNNFK 122

Query: 55  SITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKL 114
           SITAFYP+E ++S+VSV ITGLGPDFTRMESFGKV+AFADTLVSGLDRSW+RPPGVAAKL
Sbjct: 123 SITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLVSGLDRSWQRPPGVAAKL 182

Query: 115 IDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNI 174
           IDCKA+ GFYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYTVTGQFVEEE+EKYGS I
Sbjct: 183 IDCKAANGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYTVTGQFVEEEAEKYGSRI 242

Query: 175 EK 176
           EK
Sbjct: 243 EK 244

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457650|ref|XP_002273332.1| PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis vinifera] gi|297745601|emb|CBI40766.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (754), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 137/187 (73%), Positives = 164/187 (87%), Gaps = 3/187 (1%)

Query: 1   MFQLAFTACSFPAIVSYALAANE---DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
           + Q+ F+  S  AIV  ALA  E   D +VY+DE+NKF+I IPQDWQ+G+GEP+GFKS+T
Sbjct: 67  VLQMVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQDWQVGSGEPSGFKSVT 126

Query: 58  AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
           AFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDRSW+RPPG+AAKLIDC
Sbjct: 127 AFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDRSWQRPPGIAAKLIDC 186

Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
           +A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ++EEESEK+ S IEK 
Sbjct: 187 RAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSKIEKV 246

Query: 178 VASFRFI 184
           VASFRFI
Sbjct: 247 VASFRFI 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537211|gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis thaliana]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 139/187 (74%), Positives = 157/187 (83%), Gaps = 3/187 (1%)

Query: 1   MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
           M Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+G  EPNGFKSIT
Sbjct: 61  MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSIT 120

Query: 58  AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
           AFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID 
Sbjct: 121 AFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 180

Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
           +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES +  S I+K 
Sbjct: 181 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESSEQSSKIQKT 240

Query: 178 VASFRFI 184
           V SFRFI
Sbjct: 241 VKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411110|ref|NP_565131.1| PsbP domain-containing protein 3 [Arabidopsis thaliana] gi|18203439|sp|Q9S720.2|PPD3_ARATH RecName: Full=PsbP domain-containing protein 3, chloroplastic; AltName: Full=OEC23-like protein 2; Flags: Precursor gi|32815945|gb|AAP88357.1| At1g76450 [Arabidopsis thaliana] gi|110742837|dbj|BAE99317.1| hypothetical protein [Arabidopsis thaliana] gi|332197723|gb|AEE35844.1| PsbP domain-containing protein 3 [Arabidopsis thaliana]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 139/187 (74%), Positives = 157/187 (83%), Gaps = 3/187 (1%)

Query: 1   MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
           M Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+G  EPNGFKSIT
Sbjct: 61  MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSIT 120

Query: 58  AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
           AFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID 
Sbjct: 121 AFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 180

Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
           +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES +  S I+K 
Sbjct: 181 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKT 240

Query: 178 VASFRFI 184
           V SFRFI
Sbjct: 241 VKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083366|ref|XP_002306998.1| predicted protein [Populus trichocarpa] gi|222856447|gb|EEE93994.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (739), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/179 (75%), Positives = 158/179 (88%), Gaps = 3/179 (1%)

Query: 1   MFQLAFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
           +F + FTA +FPAI S ALAA    ED RVYTD+ NKF+ISIPQ WQ+GAGEP+G+KS+T
Sbjct: 8   LFNMVFTAFTFPAIASTALAATGVAEDSRVYTDDANKFKISIPQGWQVGAGEPSGYKSVT 67

Query: 58  AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
           AFYP+EAS+SSVSVVITGLGPDFTR+ESFGKV+AFA+TLV GLDRSW+RPPGVAAKLID 
Sbjct: 68  AFYPEEASNSSVSVVITGLGPDFTRLESFGKVDAFAETLVGGLDRSWQRPPGVAAKLIDS 127

Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
           KA+ G YYIEYTLQNPGESR+HL SA+G+  NGWYNRLYTVTGQFV+EESEK+G+ I K
Sbjct: 128 KAANGLYYIEYTLQNPGESRRHLLSALGVTFNGWYNRLYTVTGQFVDEESEKFGTEIRK 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839519|ref|XP_002887641.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata] gi|297333482|gb|EFH63900.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 157/188 (83%), Gaps = 4/188 (2%)

Query: 1   MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQ-DWQLGAGEPNGFKSI 56
           M Q+A +    P  VS A A   A+E  RVYTDE NKFEISIPQ DWQ+G  EPNGFKSI
Sbjct: 38  MLQIASSVFFLPLAVSPAFAETNASEAFRVYTDEANKFEISIPQEDWQVGQAEPNGFKSI 97

Query: 57  TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 116
           TAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID
Sbjct: 98  TAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPAGVTAKLID 157

Query: 117 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
            ++SKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES +  S I+K
Sbjct: 158 SRSSKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQK 217

Query: 177 AVASFRFI 184
            V SFRFI
Sbjct: 218 TVKSFRFI 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809819|emb|CAN64877.1| hypothetical protein VITISV_030793 [Vitis vinifera]

 Score =  281 bits (720), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 130/179 (72%), Positives = 157/179 (87%), Gaps = 3/179 (1%)

Query: 1   MFQLAFTACSFPAIVSYALAANE---DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
           + Q+ F+  S  AIV  ALA  E   D +VY+DE+NKF+I IPQDWQ+G+GEP+GFKS+T
Sbjct: 67  VLQIVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQDWQVGSGEPSGFKSVT 126

Query: 58  AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
           AFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDRSW+RPPG+AAKLIDC
Sbjct: 127 AFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDRSWQRPPGIAAKLIDC 186

Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
           +A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ++EEESEK+ S IEK
Sbjct: 187 RAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSKIEK 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2011711	247	AT1G76450 [Arabidopsis thalian	1.0	0.744	0.743	1.4e-71

TAIR|locus:2011711 AT1G76450 [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 139/187 (74%), Positives = 157/187 (83%)

Query:     1 MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
             M Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+G  EPNGFKSIT
Sbjct:    61 MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSIT 120

Query:    58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
             AFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID 
Sbjct:   121 AFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 180

Query:   118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
             +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES +  S I+K 
Sbjct:   181 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKT 240

Query:   178 VASFRFI 184
             V SFRFI
Sbjct:   241 VKSFRFI 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       184   0.00078  110 3  11 22  0.44    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  161 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.87u 0.09s 16.96t   Elapsed:  00:00:01
  Total cpu time:  16.87u 0.09s 16.96t   Elapsed:  00:00:01
  Start:  Fri May 10 05:31:24 2013   End:  Fri May 10 05:31:25 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S720	PPD3_ARATH	No assigned EC number	0.7433	1.0	0.7449	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002933001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (184 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023298001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (264 aa)				•			•		0.546
	GSVIVG00032533001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (266 aa)				•			•		0.512
	GSVIVG00014308001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (279 aa)				•			•		0.427

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam01789	163	pfam01789, PsbP, PsbP	3e-07

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 65  SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG-LDRSWRRPPGV--AAKLIDCKA-- 119
           S  +VSVVI+ +    + +E  G  E   + L+ G L      P G    A+L++     
Sbjct: 47  SDENVSVVISPVDKKKS-LEDLGSPEEVGERLLRGVLA-----PEGSGREAELLEASERE 100

Query: 120 --SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
              K +Y +EY ++      +H  + +     G   +LYT+  Q  E+   K     E+ 
Sbjct: 101 VDGKTYYDLEYLVRLADGGDRHELATVT-VDRG---KLYTLAAQTNEKRWFKVKKLFERV 156

Query: 178 VASFRF 183
           V SF  
Sbjct: 157 VDSFSV 162

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.97
PLN03152	241	hypothetical protein; Provisional	99.95
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.74
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	96.35
COG5435	147	Uncharacterized conserved protein [Function unknow	93.55

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=2.4e-50  Score=347.16  Aligned_cols=158  Identities=21%  Similarity=0.369  Sum_probs=141.2

Q ss_pred             HhhhhccCceeeEeCCCCeEEEccCCcee--cccCCCCcceEEEecCCCCCCceEEEEEecCCC-CccccccCCChHHHH
Q 030020           17 YALAANEDLRVYTDELNKFEISIPQDWQL--GAGEPNGFKSITAFYPQEASSSSVSVVITGLGP-DFTRMESFGKVEAFA   93 (184)
Q Consensus        17 ~a~a~~~g~~~y~D~~dGy~f~yP~~W~~--~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~-df~~l~~fG~p~eva   93 (184)
                      .|+|...||++|+|+.|||+|+||+||+.  +.|+|      ++|+|+++.+|||||+|+|+++ ++++|++||+|+|||
T Consensus       101 ~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~D------VvFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVg  174 (286)
T PLN00059        101 TAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGAD------IFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVG  174 (286)
T ss_pred             hhhcCCcccceeEcCCCCeEEeCCCCCeEeccCCCc------eEEeccCccccceEEEEecCCcccCCChHHcCCHHHHH
Confidence            47778889999999999999999999994  45667      8999999999999999998864 678999999999999


Q ss_pred             HHHHhcccccc---CCCCCCeeEEEeceec-----CceEEEEEEEeCCC----------------CcceeEEEEEEeecC
Q 030020           94 DTLVSGLDRSW---RRPPGVAAKLIDCKAS-----KGFYYIEYTLQNPG----------------ESRKHLFSAIGMASN  149 (184)
Q Consensus        94 ~~Lv~~~~r~~---~~~~~~~a~Lida~~r-----~~yY~~EY~v~~p~----------------~~~Rh~ls~v~v~~~  149 (184)
                      ++|+++++.++   +.+++|+++||+|.+|     +.||+|||++++|+                ++.||++|+|+|.| 
T Consensus       175 erLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~n-  253 (286)
T PLN00059        175 KRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVEN-  253 (286)
T ss_pred             HHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeC-
Confidence            99999998543   2346899999999999     34999999999962                23899999999998 


Q ss_pred             CccceEEEEEcccCchhhHHHHHHHHHhhcceeeC
Q 030020          150 GWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  184 (184)
Q Consensus       150 G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v~  184 (184)
                         ||||||++|+||+||+|++++|++|++||+|+
T Consensus       254 ---GkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~  285 (286)
T PLN00059        254 ---DRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE  285 (286)
T ss_pred             ---CEEEEEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence               59999999999999999999999999999985

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=1.4e-42  Score=281.67  Aligned_cols=161  Identities=31%  Similarity=0.480  Sum_probs=131.5

Q ss_pred             hhhhhHhhhhccCceeeEeCCCCeEEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHH
Q 030020           12 PAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEA   91 (184)
Q Consensus        12 ~~~~~~a~a~~~g~~~y~D~~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~e   91 (184)
                      ++++..+.....||++|.|+.+||+|.||+||...++  +|  ..++|+|+...++||+|+|+|++.++ +|++||+|++
T Consensus        10 ~~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~--~G--~~v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~   84 (175)
T PF01789_consen   10 SANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDV--SG--ADVVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEE   84 (175)
T ss_dssp             ------STT--SSEEEEEECTTTEEEEEETTEEEEES--TT--EEEEEEETTETTSEEEEEEEE-STS--SGGGG-SHHH
T ss_pred             cchhhhcccCCCCceEEEcCCCCEEEECCCCCeecCC--CC--eEEEEECcccccceEEEEEEecCCcC-chhhcCCHHH
Confidence            3333333444589999999999999999999995543  12  23789999999999999999999887 9999999999


Q ss_pred             HHHHHHhccccccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhh
Q 030020           92 FADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEES  167 (184)
Q Consensus        92 va~~Lv~~~~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw  167 (184)
                      ||++|++..+++  ...++.++||++.+|    +.||+|||+++.|++..||.+++++|.+    ||||||++|+||+||
T Consensus        85 va~~l~~~~~~~--~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~----g~lY~l~~~a~e~~w  158 (175)
T PF01789_consen   85 VAERLLNGELAS--PGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKN----GKLYTLTAQAPESRW  158 (175)
T ss_dssp             HHHHHHHHCCCH--CTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEET----TEEEEEEEEEEHHHH
T ss_pred             HHHHHhhhhccc--ccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEEC----CEEEEEEEEcCHHHH
Confidence            999999987643  223499999999999    3499999999999856899999999985    499999999999999


Q ss_pred             HHHHHHHHHhhcceee
Q 030020          168 EKYGSNIEKAVASFRF  183 (184)
Q Consensus       168 ~k~~~~l~~vv~SF~v  183 (184)
                      +|+++.|++|++||+|
T Consensus       159 ~k~~~~l~~iv~SF~v  174 (175)
T PF01789_consen  159 DKVEPKLRKIVDSFRV  174 (175)
T ss_dssp             HTCHHHHHHHHHC-EE
T ss_pred             HHHHHHHHHHHhcEEe
Confidence            9999999999999997

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=5.3e-39  Score=276.41  Aligned_cols=147  Identities=20%  Similarity=0.318  Sum_probs=123.5

Q ss_pred             cCceeeEeCCCCeEEEccCCceec-----ccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHH----HH
Q 030020           23 EDLRVYTDELNKFEISIPQDWQLG-----AGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEA----FA   93 (184)
Q Consensus        23 ~g~~~y~D~~dGy~f~yP~~W~~~-----~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~e----va   93 (184)
                      .||..|.|  |||+|+||++|+.+     .|++      ++|+|.++.++||||+|+|+  ++++|+|||+|+|    |+
T Consensus        90 ~gF~~y~~--dgY~FlyP~~W~~~ke~~~~G~d------v~f~D~~~~~eNVSV~Ispt--~k~sI~dlGsPee~l~~vg  159 (260)
T PLN00042         90 TGFLPYNG--DGFKLLVPSKWNPSKEREFPGQV------LRFEDNFDATSNLSVMVTPT--DKKSITDYGSPEEFLSKVS  159 (260)
T ss_pred             CCCeEeeC--CCeEEecCCCCccccccccCCce------EEeeccccccccEEEEEecC--CcCCHhhcCCHHHHHHHHH
Confidence            69999975  99999999999833     2554      78999999999999999998  4589999999999    77


Q ss_pred             HHHHhcccccc-CCC----CC--CeeEEEeceec----CceEEEEEEEeCCC--CcceeEEEEEEeecCCccceEEEEEc
Q 030020           94 DTLVSGLDRSW-RRP----PG--VAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTG  160 (184)
Q Consensus        94 ~~Lv~~~~r~~-~~~----~~--~~a~Lida~~r----~~yY~~EY~v~~p~--~~~Rh~ls~v~v~~~G~~~rLYTlt~  160 (184)
                      +.|.+++.... ..+    |+  .+|+||++++|    +.||+|||.+++|+  ++.||+|++++|.+    ||||||++
T Consensus       160 ylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~----GkLYtl~a  235 (260)
T PLN00042        160 YLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSD----GKLYICKA  235 (260)
T ss_pred             HHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEEC----CEEEEEEe
Confidence            77777654211 011    22  27899999999    45999999999986  35799999999986    59999999


Q ss_pred             ccCchhhHHH-HHHHHHhhcceee
Q 030020          161 QFVEEESEKY-GSNIEKAVASFRF  183 (184)
Q Consensus       161 q~~E~rw~k~-~~~l~~vv~SF~v  183 (184)
                      |+||+||.|+ ++.|++|++||+|
T Consensus       236 qa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        236 QAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             cCchhhhhHHHHHHHHHHHhceec
Confidence            9999999998 6689999999997

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=1.4e-34  Score=248.95  Aligned_cols=141  Identities=15%  Similarity=0.210  Sum_probs=118.5

Q ss_pred             CCCCeEEEccCCceec--ccCCCCc----c-----eEEEecCCCCCCceEEEEEecCC-----CCccccccCCChHHHHH
Q 030020           31 ELNKFEISIPQDWQLG--AGEPNGF----K-----SITAFYPQEASSSSVSVVITGLG-----PDFTRMESFGKVEAFAD   94 (184)
Q Consensus        31 ~~dGy~f~yP~~W~~~--~g~~sg~----k-----~v~~f~p~~~~~~NVsVvispv~-----~df~~l~~fG~p~eva~   94 (184)
                      .-.||+|+||+||...  .+..+|.    |     -.++|++  +.++||||||+|+.     ++ ++|+|||+|++|++
T Consensus       103 ~i~gY~FlyP~gW~~v~Vs~~~sGnycqp~c~~p~~dv~F~D--~~dgnVSVIVSPV~r~t~k~~-~sIeDlGsPeeVl~  179 (263)
T PLN00067        103 NVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKPN-ATIEEIGSPEKLIA  179 (263)
T ss_pred             CcccceEeCCCCCcCccccccccCccccccccCCCceEEEeC--CCCCCEEEEEecccccccCCC-CChHHccCHHHHHH
Confidence            3469999999999922  2111121    0     1278998  55889999999984     34 69999999999999


Q ss_pred             HHHhccccccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHH
Q 030020           95 TLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY  170 (184)
Q Consensus        95 ~Lv~~~~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~  170 (184)
                      +|.+.+.    .++++.++||++++|    +.||+|||.+..++. .||+|+++++.+    |||||+++|+||+||.|+
T Consensus       180 ~Lg~~v~----g~~~~~~eLLeAs~re~dGktYY~~E~~tp~a~~-gRHnLataTV~~----GkLYtf~asanEkRW~K~  250 (263)
T PLN00067        180 SLGPFVT----GNSYDPDELLETSVEKIGDQTYYKYVLETPFALT-GSHNLAKATAKG----NTVVLFVVSASDKQWQSS  250 (263)
T ss_pred             HhhHHhh----cCCCCCcceEEeeeEeeCCeEEEEEEEEecCCCC-CceEEEEEEEEC----CEEEEEEecCCHHHHHHH
Confidence            9998876    568899999999999    459999999999985 799999988865    599999999999999999


Q ss_pred             HHHHHHhhcceee
Q 030020          171 GSNIEKAVASFRF  183 (184)
Q Consensus       171 ~~~l~~vv~SF~v  183 (184)
                      ++.|++|++||+|
T Consensus       251 k~~l~~V~dSFsV  263 (263)
T PLN00067        251 EKTLKAILDSFQA  263 (263)
T ss_pred             HHHHHHHHHhccC
Confidence            9999999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.97  E-value=1.6e-31  Score=231.05  Aligned_cols=145  Identities=17%  Similarity=0.259  Sum_probs=120.0

Q ss_pred             cCceeeEeCC-------------CCeEEEccCCceec--ccCCCCcceEEEecCCCCCCceEEEEEecCC------CCcc
Q 030020           23 EDLRVYTDEL-------------NKFEISIPQDWQLG--AGEPNGFKSITAFYPQEASSSSVSVVITGLG------PDFT   81 (184)
Q Consensus        23 ~g~~~y~D~~-------------dGy~f~yP~~W~~~--~g~~sg~k~v~~f~p~~~~~~NVsVvispv~------~df~   81 (184)
                      .|++.|.-+.             ..|+|+||+||+..  ...+.|--. +.++.....++||+|+|+|++      .+.+
T Consensus        90 ~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW~ev~VS~~d~gg~~-vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~  168 (262)
T PLN00066         90 NGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTE-IDLRFASDKEGRLKVVVAPVLRFADNLGDNA  168 (262)
T ss_pred             cceEEEecCccccCcCCCCccccCCeEEECCCCCeEeecccccCCCCc-eEEEeccCCCccEEEEEeccccccccccCCC
Confidence            5899998765             57999999999932  111111111 455555678999999999985      2557


Q ss_pred             ccccCCChHHHHHHHHhccccccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEE
Q 030020           82 RMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYT  157 (184)
Q Consensus        82 ~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYT  157 (184)
                      +|++||+|++|+++|.+.++    .++.++++||++.++    +.||.|||        .||+|++++|.+    |||||
T Consensus       169 sI~dLGspeeVi~~l~~~v~----g~~~~e~eLl~a~~re~dGktYY~~E~--------~rH~LasaTV~~----GrLYt  232 (262)
T PLN00066        169 TIEEIGPPEKVISGFGPELI----GEPVEEGKVLSMEVAEHSGRTYYQFEL--------PPHTLVTATAAG----NRVYI  232 (262)
T ss_pred             ChHHcCCHHHHHHHHHHHhc----CCCccccceeEeeeeecCCcEEEEEEE--------eCceEEEEEEEC----CEEEE
Confidence            99999999999999999875    556789999999998    46999999        289999999986    59999


Q ss_pred             EEcccCchhhHHHHHHHHHhhcceeeC
Q 030020          158 VTGQFVEEESEKYGSNIEKAVASFRFI  184 (184)
Q Consensus       158 lt~q~~E~rw~k~~~~l~~vv~SF~v~  184 (184)
                      |++|+||+||.|++++|++|++||+|+
T Consensus       233 ~~asape~rW~k~~~~lr~v~dSF~V~  259 (262)
T PLN00066        233 FSVTANGLQWKRHYKDLKRIAKSFRVV  259 (262)
T ss_pred             EEeecchHhhHHHHHHHHHHhhceeee
Confidence            999999999999999999999999985

>PLN03152 hypothetical protein; Provisional

Probab=99.95  E-value=5e-27  Score=198.42  Aligned_cols=140  Identities=17%  Similarity=0.270  Sum_probs=106.9

Q ss_pred             CCCCeEEEccCCceecc------------cCCCCcceEEEecCCCCCCceEEEEEecCC------CCccccccCCChHHH
Q 030020           31 ELNKFEISIPQDWQLGA------------GEPNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMESFGKVEAF   92 (184)
Q Consensus        31 ~~dGy~f~yP~~W~~~~------------g~~sg~k~v~~f~p~~~~~~NVsVvispv~------~df~~l~~fG~p~ev   92 (184)
                      -.+||++-||-++...-            |..+--|.+.+=+.....+|||||+|+|++      -+-++|.|||+|+||
T Consensus        82 ~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EV  161 (241)
T PLN03152         82 YGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEA  161 (241)
T ss_pred             hCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhHcCCHHHH
Confidence            36899999999998321            222223335566666778999999999997      244899999999999


Q ss_pred             HHHHHhccccccCCCCCCeeEEEeceec--CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHH
Q 030020           93 ADTLVSGLDRSWRRPPGVAAKLIDCKAS--KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY  170 (184)
Q Consensus        93 a~~Lv~~~~r~~~~~~~~~a~Lida~~r--~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~  170 (184)
                      |+.++..-.   ..-.++.++|  ..+.  ++||.|||.++     .||.|++|+|.+    |||||+++|++|+||+|+
T Consensus       162 gkv~vP~g~---~~~saR~iel--~~E~dGKtYY~lEy~v~-----~RH~LaTVaVsr----GKLYTl~aSt~EkRW~Kv  227 (241)
T PLN03152        162 AKIFVPGGA---TLYSARTIKV--KEEEGIRTYYFYEFGRD-----EQHVALVATVNS----GKAYIAGATAPESKWDDD  227 (241)
T ss_pred             HHhhCCCcc---cccccceeee--eeecCCceeEEEEEEeC-----CcEEEEEEEEcC----CeEEEEecCCchhchHHH
Confidence            977652200   0002444554  2233  67999999986     599999999987    599999999999999999


Q ss_pred             HHHHHHhhcceeeC
Q 030020          171 GSNIEKAVASFRFI  184 (184)
Q Consensus       171 ~~~l~~vv~SF~v~  184 (184)
                      +++|+++++||+|+
T Consensus       228 k~kfr~aa~SFsV~  241 (241)
T PLN03152        228 GVKLRSAAISLTVL  241 (241)
T ss_pred             HHHHHHHHhheeeC
Confidence            99999999999986

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.74  E-value=0.0012  Score=50.60  Aligned_cols=122  Identities=16%  Similarity=0.224  Sum_probs=76.3

Q ss_pred             EEEccCCceecccCCCCcceEEEecCCC--CCCceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCCCCeeE
Q 030020           36 EISIPQDWQLGAGEPNGFKSITAFYPQE--ASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAK  113 (184)
Q Consensus        36 ~f~yP~~W~~~~g~~sg~k~v~~f~p~~--~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a~  113 (184)
                      +|.-|.+|+.-.        +.+|.++.  ....|+.|.-.+++++       .+.++..++.++.+-+     --..-+
T Consensus         3 ~~~lP~~~~D~t--------~nv~~~~~~~~~~~slvIsR~~l~~g-------~tl~~~~~~q~~~l~~-----~l~~~~   62 (130)
T PF08786_consen    3 SLTLPDGWQDRT--------MNVLVLPDSGGSGPSLVISRDPLPDG-------ETLEDYLQRQLAQLRK-----QLPGFQ   62 (130)
T ss_dssp             EEEEETTSEE----------BEEEEE--BTTB-EEEEEEEE---TT-------S-HHHHHHHHHHHHHC-----CSTT-E
T ss_pred             eEeCCCcceece--------EEEEEccCCCCCcceEEEEeccCCCC-------CCHHHHHHHHHHHHHh-----hCCCcE
Confidence            466799998532        24554443  3355555555566555       3677888888887632     122344


Q ss_pred             EEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcce
Q 030020          114 LIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF  181 (184)
Q Consensus       114 Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF  181 (184)
                      +++...-    ..-+.+||+-..++. .-|-.-++..-.+   +++++||..++..-.+..++.++++++||
T Consensus        63 ~~~~~~~~l~~~~a~~l~~~~~~~g~-~v~Q~q~~~~~~~---~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   63 LVERQPITLGGRPARELEYSFRSGGQ-PVYQRQAAVLLPG---RRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEETTC-EEEEEEEEEEEC----CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             EEeeEEEEeCCCCeEEEEEEEeeCCE-EEEEEEEEEEECC---CEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            5544333    247889999998875 4455555444332   59999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=96.35  E-value=0.14  Score=42.37  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=81.9

Q ss_pred             eEEEccCCceeccc-CCCCcceEEEecCC-CCCCceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCCCCee
Q 030020           35 FEISIPQDWQLGAG-EPNGFKSITAFYPQ-EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAA  112 (184)
Q Consensus        35 y~f~yP~~W~~~~g-~~sg~k~v~~f~p~-~~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a  112 (184)
                      -++-.|.||+.... ..+..-.+++.... ..-.-|+-|+++.+..+|       +|+|+.+.=-..+    +.-|+-+ 
T Consensus        33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~-------Dp~e~l~~a~~d~----~~l~g~~-  100 (175)
T PF10738_consen   33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDF-------DPAEALEHAPADA----QNLPGFR-  100 (175)
T ss_pred             EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCC-------CHHHHHHhchhhH----hhCcCcc-
Confidence            46778999995432 22233344555542 233789999998886666       4666655322221    1223433 


Q ss_pred             EEEeceec--Cc--eEEEEEEEeCCCCcceeEEEE--EEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceee
Q 030020          113 KLIDCKAS--KG--FYYIEYTLQNPGESRKHLFSA--IGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  183 (184)
Q Consensus       113 ~Lida~~r--~~--yY~~EY~v~~p~~~~Rh~ls~--v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v  183 (184)
                       -+++..-  +|  -+.+|-+-+.++ .+||...-  |.-+.+++|  |..||+++.+..-....+..+.|++.|+|
T Consensus       101 -~~~~s~~~~~GfpS~~i~GtY~~~g-~~~~~~~r~VV~~~~~~~Y--lvqltvt~~~~qa~~~~~a~~aI~~g~~I  173 (175)
T PF10738_consen  101 -ELDGSPSDFSGFPSSQIEGTYDKDG-MRLHTSQRTVVIPGDDQRY--LVQLTVTTTADQAVALADATEAIDEGFTI  173 (175)
T ss_pred             -cccCCccccCCCceeEEEEEEeeCC-EEeEeEEEEEEEeCCCcEE--EEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence             3333222  45  377885555555 34555443  333345544  88999999999999999999999999997

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=93.55  E-value=3.4  Score=33.66  Aligned_cols=124  Identities=19%  Similarity=0.323  Sum_probs=77.2

Q ss_pred             EEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEe--cCCCCccccccCCChHHHHHHHHhccccccCCCCCCeeE
Q 030020           36 EISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVIT--GLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAK  113 (184)
Q Consensus        36 ~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvis--pv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a~  113 (184)
                      +|.-|..|+.-        +|-+|--........|.+||  ++.++ .      +-.++.++.|..+-+.  . |+-  +
T Consensus        10 ~l~lP~~w~Dr--------SvNvf~~~~~gt~~~sfvIsRd~~~~g-~------~~~~y~~rql~~l~k~--L-pgy--~   69 (147)
T COG5435          10 TLELPAAWQDR--------SVNVFVSGDNGTSGFSFVISRDPLEPG-D------TFPEYVQRQLALLRKQ--L-PGY--E   69 (147)
T ss_pred             eEcCcchhccc--------eEEEEEecCCCcceeEEEEecCCCCCC-C------cHHHHHHHHHHHHHhh--C-CCe--E
Confidence            46788888832        23344444444566777776  55444 2      3356677777665321  1 222  2


Q ss_pred             EEeceec----CceEEEEEEEeCC-CCcceeEEEE-EEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceee
Q 030020          114 LIDCKAS----KGFYYIEYTLQNP-GESRKHLFSA-IGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  183 (184)
Q Consensus       114 Lida~~r----~~yY~~EY~v~~p-~~~~Rh~ls~-v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v  183 (184)
                      |....+-    .---..||.-..| .+ .|.+... +.+.++   .++-++|+.+|-.--++-+....++|.||..
T Consensus        70 ~~~~~e~~v~~~aa~~~~y~w~~~~~~-~r~v~q~~~~i~~g---~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p  141 (147)
T COG5435          70 LHHRREIEVGGAAAPLLDYQWTSPEGE-QRRVQQRQVFIERG---DTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP  141 (147)
T ss_pred             EeeccccccCccccceeEEEeecCCCC-CceEEEEEeecccC---CeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence            2222222    1245677777775 33 3444444 456554   6999999999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	8e-25
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	4e-21
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	7e-11

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 93.8 bits (232), Expect = 8e-25
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 25  LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRME 84
           L+ Y+D  + +E   P  W     +         F        ++SV+I+ +  D T + 
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LT 72

Query: 85  SFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHL 140
             G         +  ++          A+LI+ +A     + +Y +EY +       +H 
Sbjct: 73  DLGTATDVGYRFMKTVND--ASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHD 130

Query: 141 FSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFR 182
            +++         +L T      E+  +   S  +   +SF 
Sbjct: 131 LASVTTNR----GKLITFDLSTAEDRWDTVKSLFDTVASSFH 168

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 84.2 bits (207), Expect = 4e-21
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  ALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLG 77
             +A   L+ Y D  + +E   P+ W     E         F+    ++ +VSVV+  + 
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVV---FHDIIETTENVSVVVNTVA 57

Query: 78  PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNP 133
              + +E  G  E   D L+  +        G ++ LI   +     K +Y +EY +  P
Sbjct: 58  STKS-LEELGSPEEVGDRLLRNIIA--PSESGRSSALIAATSQKADDKTYYILEYAVTLP 114

Query: 134 G----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFR 182
           G      ++H  S+I ++      ++YT++    EE   K     +  V+SF 
Sbjct: 115 GDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVEDQFKTIVSSFT 163

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 57.2 bits (137), Expect = 7e-11
 Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 27/183 (14%)

Query: 18  ALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLG 77
               + D + Y    + F++ IP  W     E      +  F     ++S+V V IT   
Sbjct: 2   KPKTDTDFQTYNG--DGFKLQIPSKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAITP-- 56

Query: 78  PDFTRMESFGKVEAFADTLVSGLDRSW-----------RRPPGVAAKLIDCKAS----KG 122
            D   +  FG  E F   +   L R                    A +++   +    K 
Sbjct: 57  TDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQ 116

Query: 123 FYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVA 179
           +YY+    +     E  KH      +       +LY    Q  ++   K     +E    
Sbjct: 117 YYYLSILTRTADGNEGGKHQLVTATVNDG----KLYICKAQAGDKRWFKGAKKFVENTAT 172

Query: 180 SFR 182
           SF 
Sbjct: 173 SFS 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.12
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	97.13

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=1.9e-39  Score=258.81  Aligned_cols=154  Identities=25%  Similarity=0.425  Sum_probs=131.9

Q ss_pred             hccCceeeEeCCCCeEEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHHhcc
Q 030020           21 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL  100 (184)
Q Consensus        21 ~~~g~~~y~D~~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~  100 (184)
                      ..+||++|.|+.+||+|+||++|.......   ...++|+|+....+||+|+|+|+++ +++|++||+|++||++|+++.
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~---g~~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~   79 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVED---PVDVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNI   79 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEECCCT---TEEEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHT
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEecCCC---CceEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHh
Confidence            357999999999999999999999654321   1247899998889999999999976 589999999999999999986


Q ss_pred             ccccCCCCCCeeEEEeceec----CceEEEEEEEeCCC----CcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHH
Q 030020          101 DRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGS  172 (184)
Q Consensus       101 ~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~----~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~  172 (184)
                      .++  ..+++.++||++.+|    +.||+|||+++.|+    +..||.|++++|.+    ||||||++|+||++|+|+++
T Consensus        80 ~~~--~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~----g~lY~l~~sape~~w~~~~~  153 (165)
T 2xb3_A           80 IAP--SESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVED  153 (165)
T ss_dssp             TSC--TTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEET----TEEEEEEEEEEGGGHHHHHH
T ss_pred             hcC--CCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEEC----CEEEEEEEecCHHHhHHHHH
Confidence            521  123799999999998    34999999999998    25899999999985    59999999999999999999


Q ss_pred             HHHHhhcceeeC
Q 030020          173 NIEKAVASFRFI  184 (184)
Q Consensus       173 ~l~~vv~SF~v~  184 (184)
                      .|++|++||+|+
T Consensus       154 ~l~~v~~SF~v~  165 (165)
T 2xb3_A          154 QFKTIVSSFTVY  165 (165)
T ss_dssp             HHHHHHHTCEEC
T ss_pred             HHHHHHhhEEeC
Confidence            999999999986

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=3.4e-41  Score=271.56  Aligned_cols=157  Identities=17%  Similarity=0.265  Sum_probs=135.1

Q ss_pred             hccCceeeEeCCCCeEEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHHhcc
Q 030020           21 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL  100 (184)
Q Consensus        21 ~~~g~~~y~D~~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~  100 (184)
                      ..+||++|+|+.|||+|+||+||+..+...+.....++|+|+...++||+|+|+|++.+ ++|++||+|++||++|++.+
T Consensus        10 ~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~~~   88 (170)
T 2lnj_A           10 GIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMKTV   88 (170)
Confidence            45799999999999999999999965432212223478999999999999999999775 79999999999999999987


Q ss_pred             ccccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHHHHHH
Q 030020          101 DRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK  176 (184)
Q Consensus       101 ~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~  176 (184)
                      .++  ..+++.++||++.+|    +.||+|||+++.|+...||.|++++|.+    ||||||++|+||++|++.++.|++
T Consensus        89 ~~~--~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~----gklY~l~~~ape~~w~~~~~~l~~  162 (170)
T 2lnj_A           89 NDA--SQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNR----GKLITFDLSTAEDRWDTVKSLFDT  162 (170)
Confidence            532  234899999999998    3599999999999446899999999875    599999999999999999999999


Q ss_pred             hhcceeeC
Q 030020          177 AVASFRFI  184 (184)
Q Consensus       177 vv~SF~v~  184 (184)
                      |++||+|+
T Consensus       163 v~~SF~v~  170 (170)
T 2lnj_A          163 VASSFHVY  170 (170)
Confidence            99999985

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=3.4e-37  Score=251.39  Aligned_cols=153  Identities=20%  Similarity=0.308  Sum_probs=118.0

Q ss_pred             ccCceeeEeCCCCeEEEccCCceecccCC-CCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHHH----HHHH
Q 030020           22 NEDLRVYTDELNKFEISIPQDWQLGAGEP-NGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAF----ADTL   96 (184)
Q Consensus        22 ~~g~~~y~D~~dGy~f~yP~~W~~~~g~~-sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~ev----a~~L   96 (184)
                      ..||++|.  .|||+|+||++|....... +|  ..++|+++...++||+|+|+|++.  ++|++||+|++|    |+.|
T Consensus         6 ~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G--~~~~f~d~~~~~~nvsV~v~p~~~--~si~dlGspe~~~~~v~~~l   79 (177)
T 1v2b_A            6 DTDFQTYN--GDGFKLQIPSKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITPTDK--KSITDFGSPEQFLSQVDYLL   79 (177)
T ss_dssp             -CCEEEEE--CSSEEEEEETTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEECSC--SSGGGGCSHHHHHHHTGGGC
T ss_pred             CCCceEEe--cCCEEEEcCCCCcccccccCCC--ceEEEeCCcCCCccEEEEEeCCCC--CChhHCCCHHHHHHHHHHHH
Confidence            46999998  9999999999999432111 11  237899998889999999999943  799999999995    5555


Q ss_pred             Hhcccccc-CC------CCCCeeEEEeceec--C--ceEEEEEEEeCCCC--cceeEEEEEEeecCCccceEEEEEcccC
Q 030020           97 VSGLDRSW-RR------PPGVAAKLIDCKAS--K--GFYYIEYTLQNPGE--SRKHLFSAIGMASNGWYNRLYTVTGQFV  163 (184)
Q Consensus        97 v~~~~r~~-~~------~~~~~a~Lida~~r--~--~yY~~EY~v~~p~~--~~Rh~ls~v~v~~~G~~~rLYTlt~q~~  163 (184)
                      .++.+... ..      ++.++|+||++.+|  +  .||+|||.++.|+.  ..||+|++++|.+    ||||||++|+|
T Consensus        80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~----gkLY~l~~~a~  155 (177)
T 1v2b_A           80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAG  155 (177)
T ss_dssp             ------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEE
T ss_pred             HHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEEC----CEEEEEEEecC
Confidence            55543210 01      12388999999999  3  49999999999972  4799999999986    59999999999


Q ss_pred             chhhHHH-HHHHHHhhcceeeC
Q 030020          164 EEESEKY-GSNIEKAVASFRFI  184 (184)
Q Consensus       164 E~rw~k~-~~~l~~vv~SF~v~  184 (184)
                      |+||+|. ++.|++|++||+|.
T Consensus       156 e~~W~k~~~~~l~~v~~SF~v~  177 (177)
T 1v2b_A          156 DKRWFKGAKKFVENTATSFSLA  177 (177)
T ss_dssp             GGGCSTTTTHHHHHHHHTCEEC
T ss_pred             HHHhhhhHHHHHHHHHhheecC
Confidence            9999995 99999999999983

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.12  E-value=0.0001  Score=57.20  Aligned_cols=129  Identities=15%  Similarity=0.187  Sum_probs=83.2

Q ss_pred             CCCeEEEccCCceecccCCCCcceEEEecCCCCC-C--ceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCC
Q 030020           32 LNKFEISIPQDWQLGAGEPNGFKSITAFYPQEAS-S--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP  108 (184)
Q Consensus        32 ~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~-~--~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~  108 (184)
                      -+.++|..|.||+.. +       +.+|..+... .  -|+.|...+++++       .+.++..++-++.+.+.  - +
T Consensus         8 ~~Egsl~lP~gw~D~-t-------~nv~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~~~--l-~   69 (148)
T 1tu1_A            8 LHEADLEIPDAWQDQ-S-------INIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQ--L-P   69 (148)
T ss_dssp             CSSEEEEEETTSEEC-C-------BEEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHH--S-T
T ss_pred             ECCEEEeCCCCcEee-e-------EEEEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHHhh--C-c
Confidence            467899999999932 2       2455544222 2  4555555566554       35666666655554211  1 1


Q ss_pred             C-CeeEEEeceec-CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceee
Q 030020          109 G-VAAKLIDCKAS-KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  183 (184)
Q Consensus       109 ~-~~a~Lida~~r-~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v  183 (184)
                      + +...+-.+.-+ ..--.+||+-...+. .+|-.-++.+.. +   ++|.||..+|...|+..+..+++|++||+.
T Consensus        70 ~y~~~~~~~~~l~g~~a~~~e~~~~~~g~-~~~Q~q~~~~~~-~---~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~  141 (148)
T 1tu1_A           70 GFKLHKRWDINIHGHAAVLLDYQWQREGR-DLMLRQVFIERR-P---AVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (148)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEEEEEETTE-EEEEEEEEECCS-S---SEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             CcEEeeeEeEEEcCCcEEEEEEEEccCCE-EEEEEEEEEEEC-C---eEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence            1 11111111112 134778888887664 788888866654 2   999999999999999999999999999985

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=97.13  E-value=0.04  Score=43.98  Aligned_cols=134  Identities=14%  Similarity=0.196  Sum_probs=87.9

Q ss_pred             CCeEEEccCCceecccCCCCcceEEEecCC-CC--CCceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCCC
Q 030020           33 NKFEISIPQDWQLGAGEPNGFKSITAFYPQ-EA--SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG  109 (184)
Q Consensus        33 dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~-~~--~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~  109 (184)
                      =++++-.|.||.......+    ..+--|. ..  =.-|+-|.+.-.+.|+     |   ++.-..| .+..   ..-|+
T Consensus        18 p~~~v~~P~gWe~~~~~~~----~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el-~~~~---~~lp~   81 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTMGT----QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTEL-DQRA---TQLPD   81 (161)
T ss_dssp             CEEEEECCTTEEECTTSSS----SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHH-HHHH---TTSTT
T ss_pred             ceeeccCCCCceEcCCCCc----eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHH-HHHH---hhCCC
Confidence            4789999999997754433    1333333 22  2789988887776664     2   3333333 3321   11244


Q ss_pred             CeeEEEeceecCc--eEEEEEEEeCCCCcceeE--EEEEEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceeeC
Q 030020          110 VAAKLIDCKASKG--FYYIEYTLQNPGESRKHL--FSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  184 (184)
Q Consensus       110 ~~a~Lida~~r~~--yY~~EY~v~~p~~~~Rh~--ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v~  184 (184)
                      -+-.-....+.+|  -+..||.-..|.. ..+.  +..+.|.++|.. -++.|+++|.+..-+.+.+.++++++|++|.
T Consensus        82 ~~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~~v~-~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~  158 (161)
T 3lyd_A           82 YAERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHPHAV-DIIQLTATCAGDQTADYWDTFRLMHADLTVQ  158 (161)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECSSCE-EEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred             cEeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecCCEE-EEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence            4433334445555  6999999988875 3453  567888887632 3455599999999999999999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	3e-19

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 78.2 bits (192), Expect = 3e-19
 Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 27/177 (15%)

Query: 24  DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRM 83
           D + Y    + F++ IP  W     E      +  F     ++S+V V IT    D   +
Sbjct: 2   DFQTYNG--DGFKLQIPSKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAITP--TDKKSI 56

Query: 84  ESFGKVEAFADTLVSGLDRSW-----------RRPPGVAAKLIDCKAS----KGFYYIEY 128
             FG  E F   +   L R                    A +++   +    K +YY+  
Sbjct: 57  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSI 116

Query: 129 TLQNP--GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 182
             +     E  KH      +       +LY    Q  ++   K     +E    SF 
Sbjct: 117 LTRTADGNEGGKHQLVTATV----NDGKLYICKAQAGDKRWFKGAKKFVENTATSFS 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.52

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=4.9e-38  Score=251.14  Aligned_cols=151  Identities=22%  Similarity=0.331  Sum_probs=121.6

Q ss_pred             CceeeEeCCCCeEEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHHhccccc
Q 030020           24 DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRS  103 (184)
Q Consensus        24 g~~~y~D~~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~  103 (184)
                      +|++|.|  |||+|+||+||...... .+....+.|+++...++||+|+|+|+  ++++|++||+|+++++++...+.+.
T Consensus         2 ~~~~y~~--dgy~f~~P~~W~~~~~~-~~~g~d~~f~d~~~~~~nv~V~v~p~--~~~sl~~~G~p~~~~~~v~~~l~~~   76 (171)
T d1v2ba_           2 DFQTYNG--DGFKLQIPSKWNPNKEV-EYPGQVLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLLGRQ   76 (171)
T ss_dssp             CEEEEEC--SSEEEEEETTCEECCCC-CSTTEEEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC---
T ss_pred             CcccccC--CCEEEECCCCCceeccc-CCCCceEEEeccccCCceEEEEEecC--CCcchhhccChHHHHHHHHHHHhhh
Confidence            6999998  89999999999844321 12223467999999999999999987  4689999999999999987777654


Q ss_pred             cCC-----------CCCCeeEEEeceec----CceEEEEEEEeCCC--CcceeEEEEEEeecCCccceEEEEEcccCchh
Q 030020          104 WRR-----------PPGVAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEE  166 (184)
Q Consensus       104 ~~~-----------~~~~~a~Lida~~r----~~yY~~EY~v~~p~--~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~r  166 (184)
                      +..           ++++.++|++|.+|    +.||+|||.+++|+  ++.||+|++++|.+    ||||||++|+||++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~----grLYtl~~~~pe~~  152 (171)
T d1v2ba_          77 AYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAGDKR  152 (171)
T ss_dssp             ---------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEEGGG
T ss_pred             hhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeC----CEEEEEEEecCHHH
Confidence            322           35789999999999    34999999999985  34799999999986    59999999999999


Q ss_pred             hHHH-HHHHHHhhcceee
Q 030020          167 SEKY-GSNIEKAVASFRF  183 (184)
Q Consensus       167 w~k~-~~~l~~vv~SF~v  183 (184)
                      |+|. +..|++|++||+|
T Consensus       153 w~~~~~~~l~~~v~SF~v  170 (171)
T d1v2ba_         153 WFKGAKKFVENTATSFSL  170 (171)
T ss_dssp             CSTTTTHHHHHHHHTCEE
T ss_pred             hhhhhHHHHHHHHhceEe
Confidence            9985 5679999999998

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.52  E-value=9.5e-07  Score=66.18  Aligned_cols=123  Identities=14%  Similarity=0.171  Sum_probs=85.8

Q ss_pred             EEEccCCceecccCCCCcceEEEec-CCCCCC--ceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCCCCee
Q 030020           36 EISIPQDWQLGAGEPNGFKSITAFY-PQEASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAA  112 (184)
Q Consensus        36 ~f~yP~~W~~~~g~~sg~k~v~~f~-p~~~~~--~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a  112 (184)
                      +|..|.||+.-.-        .+|. |.....  -|+.|...+++++       .++++..++.++.+.+..   +  .-
T Consensus        12 s~~lP~gw~d~t~--------ni~~~~~~~~~~~~~lvIsr~~l~~~-------~~l~~~~~~~~~~l~~~l---~--~~   71 (144)
T d1tu1a_          12 DLEIPDAWQDQSI--------NIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQL---P--GF   71 (144)
T ss_dssp             EEEEETTSEECCB--------EEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHHS---T--TC
T ss_pred             EEeCCCCceeCcc--------eEEEecCCCCCcceEEEEEeecCCCC-------CCHHHHHHHHHHHHHhhC---C--Cc
Confidence            8899999984321        2333 443333  3454444455444       478899999998875321   1  24


Q ss_pred             EEEeceec--C--ceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceee
Q 030020          113 KLIDCKAS--K--GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  183 (184)
Q Consensus       113 ~Lida~~r--~--~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v  183 (184)
                      ++++...-  +  .-+.+||+-..++. ..|-.-++.+- +   ++.|+|+..++...++..++.++++++||+.
T Consensus        72 ~~~~~~~~~l~g~pa~~~~~t~~~~~~-~v~Q~q~~~~~-~---~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p  141 (144)
T d1tu1a_          72 KLHKRWDINIHGHAAVLLDYQWQREGR-DLMLRQVFIER-R---PAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (144)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTE-EEEEEEEEECC-S---SSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             EEEeeEecccCCCcEEEEEEEEeeCCE-eEEEEEEEEEe-C---CCEEEEEEecCCcCCHHHHHHHHHHHHhCcc
Confidence            56654443  2  36889999998874 56777775554 4   4789999999999999999999999999985