Citrus Sinensis ID: 030023

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MINRGTFIYFFVQVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEEEEEEccccEEEEEEccEEEEEEcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccEEHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEEEEEEccccccEEEEcccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MINRGTFIYFFVQVEgmqvhaneggatqtrgGIYWLILpagylgssFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDdlisrrvhssdaekfaevcpcpcngvgwGVIWGIISFAFLCAAMYLGLVILS
Flexible Loop (DISEMBL)
MINRGTFIYFFVQVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Low Complexity Region (SEG)
MINRGTFIYFFVQVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGClalalfivlfiaQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNgvgwgviwgiiSFAFLCAAMYLGLVILS
Disordered region (IsUnstruct)
****GTFIYFFVQVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVIL*
Disordered Region (DISOPRED)
**NRGTFIYFFVQVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Disordered Region (DISEMBL)
MINRGTFIYFFVQVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Disordered Region (DISPRO)
*INRGTFIYFFVQVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINRGTFIYFFVQVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
224079325	233	predicted protein [Populus trichocarpa]	0.934	0.738	0.901	6e-85
449441740	233	PREDICTED: uncharacterized protein LOC10	0.934	0.738	0.866	2e-83
351721488	247	uncharacterized protein LOC100306005 [Gl	0.934	0.696	0.860	5e-83
297734221	462	unnamed protein product [Vitis vinifera]	0.934	0.372	0.831	2e-82
356527494	234	PREDICTED: uncharacterized protein LOC10	0.934	0.735	0.854	3e-82
356511299	234	PREDICTED: uncharacterized protein LOC10	0.934	0.735	0.854	1e-81
225452059	233	PREDICTED: uncharacterized protein LOC10	0.934	0.738	0.848	2e-81
225455968	233	PREDICTED: uncharacterized protein LOC10	0.934	0.738	0.831	2e-81
42563004	234	uncharacterized protein [Arabidopsis tha	0.929	0.730	0.877	7e-80
297838433	235	hypothetical protein ARALYDRAFT_475801 [	0.929	0.727	0.872	8e-80

>gi|224079325|ref|XP_002305821.1| predicted protein [Populus trichocarpa] gi|222848785|gb|EEE86332.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (815), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 155/172 (90%), Positives = 165/172 (95%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
           QVEGMQVHANEGG TQTRGG+YWLILPAGYLGSSFWGMALVLASTNL TARIAAG LA+A
Sbjct: 62  QVEGMQVHANEGGVTQTRGGVYWLILPAGYLGSSFWGMALVLASTNLITARIAAGGLAVA 121

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           L IVLFIAQNWTLRGLCIGFI+FLAV+WVLQE+T+VRILRYVILFIGVMNSLFSVYDIYD
Sbjct: 122 LLIVLFIAQNWTLRGLCIGFIIFLAVVWVLQEKTTVRILRYVILFIGVMNSLFSVYDIYD 181

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRVH+SDAEKFAE+CPCPC GVGWGVIWGIISF FL A++YLGLVILS
Sbjct: 182 DLISRRVHTSDAEKFAEICPCPCTGVGWGVIWGIISFLFLSASIYLGLVILS 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441740|ref|XP_004138640.1| PREDICTED: uncharacterized protein LOC101216469 [Cucumis sativus] gi|449490096|ref|XP_004158506.1| PREDICTED: uncharacterized protein LOC101228190 [Cucumis sativus]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/172 (86%), Positives = 165/172 (95%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
           +VEG+QVHANEGG TQTRGG YWLILPAGYLGSSFWGMA++LASTNL TARIAAGCL LA
Sbjct: 62  EVEGIQVHANEGGVTQTRGGAYWLILPAGYLGSSFWGMAMILASTNLLTARIAAGCLGLA 121

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           L +VLFIA+NWTLRGLC+GFI+FLAV+WVLQE T+VRILRYVILFIGVMNSLFSVYDIYD
Sbjct: 122 LLVVLFIAKNWTLRGLCVGFIIFLAVVWVLQETTTVRILRYVILFIGVMNSLFSVYDIYD 181

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRV+SSDAEKFAE+CPCPCNG+GWGVIWG+ISF FLCA++YLGLVILS
Sbjct: 182 DLISRRVNSSDAEKFAELCPCPCNGIGWGVIWGMISFIFLCASIYLGLVILS 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721488|ref|NP_001236187.1| uncharacterized protein LOC100306005 [Glycine max] gi|255627249|gb|ACU13969.1| unknown [Glycine max]

 Score =  311 bits (798), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/172 (86%), Positives = 164/172 (95%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
           +VEG+QVHANEGG TQTRGGIYW+ILPAGYLGSSFWGMAL+LASTNL TA+IAAGC   A
Sbjct: 62  KVEGIQVHANEGGVTQTRGGIYWVILPAGYLGSSFWGMALILASTNLLTAKIAAGCFIAA 121

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           L +VLF+A+NWTLRGLCIGFIVF+AVIW+LQE+T+V +LRYVILFIGVMNSLFSVYDIYD
Sbjct: 122 LIVVLFLAKNWTLRGLCIGFIVFIAVIWLLQEKTTVHVLRYVILFIGVMNSLFSVYDIYD 181

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRVHSSDAEKFAEVCPCPCNG GWGVIWG+ISFAFLCA++YLGLVILS
Sbjct: 182 DLISRRVHSSDAEKFAEVCPCPCNGFGWGVIWGMISFAFLCASLYLGLVILS 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734221|emb|CBI15468.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 143/172 (83%), Positives = 160/172 (93%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
            VEG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L++ASTN+ TA+IAAGC A A
Sbjct: 291 HVEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLIIASTNVLTAKIAAGCFAFA 350

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           L +VLF+A+NWTLRGLCIGFI+ +AV+W+LQE T +RILRY+ILFIGVMNSLFSVYDIYD
Sbjct: 351 LLVVLFVAKNWTLRGLCIGFIILIAVVWLLQETTEIRILRYIILFIGVMNSLFSVYDIYD 410

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRV+SSDAEKFAEVCPCPCNGVGWGVIWG+ISF FLC AMYLGLVILS
Sbjct: 411 DLISRRVNSSDAEKFAEVCPCPCNGVGWGVIWGLISFLFLCGAMYLGLVILS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527494|ref|XP_003532344.1| PREDICTED: uncharacterized protein LOC100816181 [Glycine max]

 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 163/172 (94%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
           +VEG+QVHANEGG TQTRGGIYW+ILPAGYLGSSFWGM L+LASTNL TA+IAAGC   A
Sbjct: 62  KVEGIQVHANEGGVTQTRGGIYWVILPAGYLGSSFWGMVLILASTNLLTAKIAAGCFIAA 121

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           L +VLF+A+NWTLRGLCIGFIVF+AVIW+LQE+T+V +LRYVILFIGVMNSLFSVYDIYD
Sbjct: 122 LIVVLFLAKNWTLRGLCIGFIVFIAVIWLLQEKTTVHVLRYVILFIGVMNSLFSVYDIYD 181

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRVHSSDAEKFAEVCPCPCNG GWGVIWG+ISFAFLCA++YLGLVILS
Sbjct: 182 DLISRRVHSSDAEKFAEVCPCPCNGFGWGVIWGMISFAFLCASLYLGLVILS 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511299|ref|XP_003524364.1| PREDICTED: uncharacterized protein LOC100814166 [Glycine max]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 157/172 (91%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
            +EG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L+LASTNL TARIAAGC   A
Sbjct: 63  HIEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLILASTNLLTARIAAGCFIAA 122

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           L IVLFIA+NWTLRGLCIGFI+FL VIW+LQE T VRILRY+ILFIGVMNSLFSVYDIYD
Sbjct: 123 LLIVLFIAKNWTLRGLCIGFIIFLGVIWILQETTKVRILRYIILFIGVMNSLFSVYDIYD 182

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRVHSSDAEKFAEVCPCPC GVGWGVIWG+ISF FLC A+YLG VILS
Sbjct: 183 DLISRRVHSSDAEKFAEVCPCPCTGVGWGVIWGLISFVFLCGAVYLGAVILS 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452059|ref|XP_002283944.1| PREDICTED: uncharacterized protein LOC100253235 [Vitis vinifera] gi|296087266|emb|CBI33640.3| unnamed protein product [Vitis vinifera]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 146/172 (84%), Positives = 161/172 (93%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
           QVEG+QV+A+EGG TQTRGG+YWLILPAGYLGSSFWGM  +LASTNL T+RIAAGC A+A
Sbjct: 62  QVEGIQVNADEGGVTQTRGGVYWLILPAGYLGSSFWGMVFILASTNLLTSRIAAGCFAVA 121

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           L +VLFIA+NWTLRGLCIGFI+FLA+IWVLQE T VRILR+ ILF+GVMNSLFSVYDIYD
Sbjct: 122 LIVVLFIAKNWTLRGLCIGFIIFLAIIWVLQETTKVRILRFFILFMGVMNSLFSVYDIYD 181

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRVHSSDAEKFAE+CPCPCNGVGWGVIWG+ISF FL AAMYLGLVILS
Sbjct: 182 DLISRRVHSSDAEKFAEICPCPCNGVGWGVIWGMISFIFLAAAMYLGLVILS 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455968|ref|XP_002278471.1| PREDICTED: uncharacterized protein LOC100247427 [Vitis vinifera]

 Score =  306 bits (784), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 143/172 (83%), Positives = 160/172 (93%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
            VEG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L++ASTN+ TA+IAAGC A A
Sbjct: 62  HVEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLIIASTNVLTAKIAAGCFAFA 121

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           L +VLF+A+NWTLRGLCIGFI+ +AV+W+LQE T +RILRY+ILFIGVMNSLFSVYDIYD
Sbjct: 122 LLVVLFVAKNWTLRGLCIGFIILIAVVWLLQETTEIRILRYIILFIGVMNSLFSVYDIYD 181

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRV+SSDAEKFAEVCPCPCNGVGWGVIWG+ISF FLC AMYLGLVILS
Sbjct: 182 DLISRRVNSSDAEKFAEVCPCPCNGVGWGVIWGLISFLFLCGAMYLGLVILS 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563004|ref|NP_176877.2| uncharacterized protein [Arabidopsis thaliana] gi|117168235|gb|ABK32200.1| At1g67060 [Arabidopsis thaliana] gi|222424301|dbj|BAH20107.1| AT1G67060 [Arabidopsis thaliana] gi|332196470|gb|AEE34591.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  301 bits (771), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 151/172 (87%), Positives = 162/172 (94%), Gaps = 1/172 (0%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
            VEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA  L LA
Sbjct: 64  DVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAGLGLA 123

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           LFIVLFIA+NWTLRGLCIGFIVFLAVIWVLQE T+V+ILRYVILFIGVMNSLFSVYDIYD
Sbjct: 124 LFIVLFIAKNWTLRGLCIGFIVFLAVIWVLQELTTVKILRYVILFIGVMNSLFSVYDIYD 183

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRVHSSDAEKFAE+CPC C G GWGVIWG+ISFAFLCA++YLGLVILS
Sbjct: 184 DLISRRVHSSDAEKFAEICPC-CTGCGWGVIWGMISFAFLCASLYLGLVILS 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838433|ref|XP_002887098.1| hypothetical protein ARALYDRAFT_475801 [Arabidopsis lyrata subsp. lyrata] gi|297332939|gb|EFH63357.1| hypothetical protein ARALYDRAFT_475801 [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (771), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 150/172 (87%), Positives = 162/172 (94%), Gaps = 1/172 (0%)

Query: 13  QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 72
            VEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA  L LA
Sbjct: 65  DVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAGLGLA 124

Query: 73  LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 132
           LFIVLFIA+NWTLRGLCIGFIVFLA+IWVLQE T+V+ILRYVILFIGVMNSLFSVYDIYD
Sbjct: 125 LFIVLFIAKNWTLRGLCIGFIVFLAIIWVLQELTTVKILRYVILFIGVMNSLFSVYDIYD 184

Query: 133 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 184
           DLISRRVHSSDAEKFAE+CPC C G GWGVIWG+ISFAFLCA++YLGLVILS
Sbjct: 185 DLISRRVHSSDAEKFAEICPC-CTGCGWGVIWGMISFAFLCASLYLGLVILS 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2019743	234	AT1G67060 "AT1G67060" [Arabido	0.923	0.726	0.766	1.1e-64
ASPGD|ASPL0000071635	269	AN4854 [Emericella nidulans (t	0.706	0.483	0.380	2e-17
UNIPROTKB|Q486T6	226	CPS_1186 "Putative membrane pr	0.635	0.517	0.32	5.4e-08
TIGR_CMR|CPS_1186	226	CPS_1186 "putative membrane pr	0.635	0.517	0.32	5.4e-08

TAIR|locus:2019743 AT1G67060 "AT1G67060" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 131/171 (76%), Positives = 141/171 (82%)

Query:    14 VEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCXXXXX 73
             VEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA       
Sbjct:    65 VEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAGLGLAL 124

Query:    74 XXXXXXXQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDD 133
                    +NWTLRGLCIGFIVFLAVIWVLQE T+V+ILRYVILFIGVMNSLFSVYDIYDD
Sbjct:   125 FIVLFIAKNWTLRGLCIGFIVFLAVIWVLQELTTVKILRYVILFIGVMNSLFSVYDIYDD 184

Query:   134 LISRRVHSSDAEKFAEVCPCPCNXXXXXXXXXXXSFAFLCAAMYLGLVILS 184
             LISRRVHSSDAEKFAE+CPC C            SFAFLCA++YLGLVILS
Sbjct:   185 LISRRVHSSDAEKFAEICPC-CTGCGWGVIWGMISFAFLCASLYLGLVILS 234

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

ASPGD|ASPL0000071635 AN4854 [Emericella nidulans (taxid:162425)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 54/142 (38%), Positives = 80/142 (56%)

Query:    13 QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCXXXX 72
             +V+ + +  +EGG T  +GG+  + LPAGYLGSS  G  L+ A  N+  +++A+      
Sbjct:    84 RVKSISLDPHEGGVTHMQGGMAAITLPAGYLGSSIIGALLIFAGFNIIASKVASIVLGVC 143

Query:    73 XXXXXXXXQNWTLRGLCIGFIVFLAV-----IWVLQEETSVRILRYVILFIGVMNSLFSV 127
                       W  R L     V LAV      W +    +   L++V+LFIGVM++L+SV
Sbjct:   144 FLLTLW----WARRDLLTIVTVLLAVGLLVACWFIAHGEA---LKWVVLFIGVMSALYSV 196

Query:   128 YDIYDDLISRRVHSSDAEKFAE 149
             +DI DDLI R+V+SSDA  FA+
Sbjct:   197 WDICDDLILRKVNSSDASVFAQ 218

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q486T6 CPS_1186 "Putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 126 (49.4 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 40/125 (32%), Positives = 65/125 (52%)

Query:    13 QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALV-LASTNLTTARIAAGCXXX 71
             ++  +Q+ AN  G   TRGG+ ++I   GY G++FWG  L  LA+++  TA+I +G    
Sbjct:    60 EIMRIQLFANGAGLCTTRGGLSFIISFFGYAGATFWGWLLFKLANSHQRTAQIVSGFMIV 119

Query:    72 XXXXXXXXXQNWTLRGLCIGFIVFLAVIWVLQ-EETSVRILRYVILFIGV---MNSLFSV 127
                        W    L I  I  LAV++VL  +   +  L+ ++ F G+   +NSLFS 
Sbjct:   120 LLLVSIIF---WARDLLTIIIISSLAVMFVLTIKMRRLYTLQVLLKFFGLSILLNSLFSP 176

Query:   128 YDIYD 132
               ++D
Sbjct:   177 TYLFD 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1186 CPS_1186 "putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 126 (49.4 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 40/125 (32%), Positives = 65/125 (52%)

Query:    13 QVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALV-LASTNLTTARIAAGCXXX 71
             ++  +Q+ AN  G   TRGG+ ++I   GY G++FWG  L  LA+++  TA+I +G    
Sbjct:    60 EIMRIQLFANGAGLCTTRGGLSFIISFFGYAGATFWGWLLFKLANSHQRTAQIVSGFMIV 119

Query:    72 XXXXXXXXXQNWTLRGLCIGFIVFLAVIWVLQ-EETSVRILRYVILFIGV---MNSLFSV 127
                        W    L I  I  LAV++VL  +   +  L+ ++ F G+   +NSLFS 
Sbjct:   120 LLLVSIIF---WARDLLTIIIISSLAVMFVLTIKMRRLYTLQVLLKFFGLSILLNSLFSP 176

Query:   128 YDIYD 132
               ++D
Sbjct:   177 TYLFD 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.142   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       161   0.00074  107 3  11 21  0.39    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  151 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.98u 0.10s 12.08t   Elapsed:  00:00:01
  Total cpu time:  11.98u 0.10s 12.08t   Elapsed:  00:00:01
  Start:  Fri May 10 05:35:07 2013   End:  Fri May 10 05:35:08 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IV000578 hypothetical protein (233 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam13398	201	pfam13398, Peptidase_M50B, Peptidase M50B-like	3e-33

>gnl|CDD|222102 pfam13398, Peptidase_M50B, Peptidase M50B-like

 Score =  116 bits (294), Expect = 3e-33
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 13  QVEGMQVHANEGGATQTRGGIY----WLILPAGYLGSSFWGMALVLASTNLTTARIAAGC 68
           +V+G+++H +  G T +RG       +L L AGYLG + WG+ L+L +     AR     
Sbjct: 42  RVKGIELHPDGSGLTVSRGRPGGLGMFLTLAAGYLGPALWGLLLILLAFA-GRARALLWL 100

Query: 69  LALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVY 128
               L ++L   +N     + +     L  +W L       +L +V+LF+GV   L +V 
Sbjct: 101 GVALLLVLLLWVRNLFGLLILLLTGALLLALWWLAPPQ---VLAFVLLFLGVFLLLGAVR 157

Query: 129 DIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAA 175
           DI DDLI RR  SSDA++ AE+   P     WG +W +IS   L   
Sbjct: 158 DI-DDLIRRRAPSSDADQLAELTGLP--AWLWGGLWLLISLGCLALG 201

This is a family of bacterial and plant peptidases in the same family as MEROPS:M50B. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF13398	200	Peptidase_M50B: Peptidase M50B-like	100.0

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=100.00  E-value=1.1e-31  Score=221.31  Aligned_cols=159  Identities=35%  Similarity=0.573  Sum_probs=136.4

Q ss_pred             EeceEEEEEEEecCCCceeEEec--Cce-eeEecccchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 030023            9 YFFVQVEGMQVHANEGGATQTRG--GIY-WLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTL   85 (184)
Q Consensus         9 ~~gG~v~~I~l~~d~sG~T~s~G--g~~-~~~~~AGY~gp~l~G~~l~~~~~~~~~~~i~~~~~~~lll~~l~~vRn~~g   85 (184)
                      -+|||+++|+++||+||.|.++|  +++ +++++|||++|+++|..+++++++++.+..+. ...+.++..++++||+++
T Consensus        38 l~G~~v~~i~l~~~~~G~~~~~~~~~~~~~~i~~aGyl~~~l~g~~~~~~~~~~~~~~~l~-~~~~~l~~~l~~~r~~~~  116 (200)
T PF13398_consen   38 LTGGRVKGIVLFPDGSGVTVSSGPSGIGRFLIALAGYLGPALFGLLLLWLLFSGWARAVLF-LGLLILLVLLLFVRNWFG  116 (200)
T ss_pred             HhCCCcceEEEEeCCCceEEEecCCCcchhHHhcccchHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHhhHHH
Confidence            36999999999999999999999  543 68999999999999999999887766654444 555566677788999999


Q ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHhccCCCCCcHHHHHhHCCCCCCchhHHHHHH
Q 030023           86 RGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWG  165 (184)
Q Consensus        86 ~~~~l~~~~l~~~~w~~~~~~~~~~l~~~llf~Gv~~~l~~v~dl~~~~~~~~~~~SDA~~LA~lt~~~~Pa~~W~~lw~  165 (184)
                      +..++..++++...++..+   +...+++++++|+++++|+++|+ ||+++|+.++|||+|+||+|++  |+++|+.+|.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ig~~~~l~~~~~i-~~l~~~~~~~sDa~~la~lt~~--p~~~W~~~~~  190 (200)
T PF13398_consen  117 ILVVILFGALLIALWFFAP---PWILRFILLFIGVFLLLYSVRDI-DDLFRRRVNASDADQLARLTGL--PAWVWGLLWL  190 (200)
T ss_pred             HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHcCH-HHHhcCCCCCChHHHHHHHHCC--CHHHHHHHHH
Confidence            9999986555555555444   57888999999999999999998 8888999999999999999999  9999999999


Q ss_pred             HHHHHHHHH
Q 030023          166 IISFAFLCA  174 (184)
Q Consensus       166 ~isl~~l~~  174 (184)
                      ++|+.++.+
T Consensus       191 ~~s~~~l~~  199 (200)
T PF13398_consen  191 AISLACLAA  199 (200)
T ss_pred             HHHHHHHHh
Confidence            999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00