Citrus Sinensis ID: 030040

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMIIFRTK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHccccccccEEEEEcccccccccccccccccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHHccccccEEEEHHcHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccEEEEEEccEEEEEEEcccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHccccccccEEEEEccccccHHHHccccccccccEEEEEEccc
Coil and Loop (DISEMBL)
MFDAAELEIEGDFLYFLADAAVTAfqygnpdklctplveaknaGEDLVDAYAKFVKEYYLGSFGASVQTYNQkrlkntavtdqsadRLWWFQVCTEVAffqvapandsvrsskvdtRYHLDLCKnvfgegiypdvdstniyyggtkiagskivftngsqdpwrhaskqtsspdskYFMIIFRTK
Flexible Loop (DISEMBL)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFfqvapandsvrsskvdtrYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDpwrhaskqtsspdskyFMIIFRTK
Low Complexity Region (SEG)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMIIFRTK
Disordered region (IsUnstruct)
******LEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQV**************RYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTN*******************YFMIIF***
Disordered Region (DISOPRED)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMIIFRTK
Disordered Region (DISEMBL)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQD***********PDSKYFMIIFRTK
Disordered Region (DISPRO)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMIIFRT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMIIFRTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q1PF50	489	Probable serine protease	no	no	0.989	0.372	0.598	2e-65
Q9NQE7	514	Thymus-specific serine pr	yes	no	0.532	0.190	0.343	9e-09
Q9QXE5	509	Thymus-specific serine pr	yes	no	0.423	0.153	0.345	3e-08
P34528	510	Putative serine protease	no	no	0.592	0.213	0.312	3e-07
P90893	540	Putative serine protease	no	no	0.472	0.161	0.290	1e-05

>sp|Q1PF50|EDA2_ARATH Probable serine protease EDA2 OS=Arabidopsis thaliana GN=EDA2 PE=2 SV=2

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 143/182 (78%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F+A EL+++ DFLY  ADAAV AFQYGNPDKLC PLVEAK  G DLV  Y+ +V+EY +
Sbjct: 251 LFNATELDVDADFLYLTADAAVMAFQYGNPDKLCVPLVEAKKNGSDLVVTYSTYVREYCM 310

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
             +G  V+TYN+K L+NT VT  SA RLWWFQ CTE+ +FQVAP  DSVRS +++T +HL
Sbjct: 311 RIWGLRVRTYNRKHLRNTVVTADSAYRLWWFQACTELGYFQVAPKYDSVRSHQINTTFHL 370

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMII 180
           DLCK++FG+ +YP VD+TN+YYGG ++A +KI+FTNGS+DPWRHASKQ S+ +   ++I 
Sbjct: 371 DLCKSLFGKDVYPKVDATNLYYGGDRLAATKIIFTNGSEDPWRHASKQNSTHEMPSYIIK 430

Query: 181 FR 182
            R
Sbjct: 431 CR 432

May be involved in a proteolytic pathway controlling the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -

>sp|Q9NQE7|TSSP_HUMAN Thymus-specific serine protease OS=Homo sapiens GN=PRSS16 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 85  ADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEG---IYPDVDSTNIY 141
            DR W +Q CTE  F+          S        LDLC+ VFG     +   V  TN Y
Sbjct: 369 GDRQWLYQTCTEFGFYVTCENPRCPFSQLPALPSQLDLCEQVFGLSALSVAQAVAQTNSY 428

Query: 142 YGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMIIFRT 183
           YGG     +K++F NG  DPW H    T +  S    ++ RT
Sbjct: 429 YGGQTPGANKVLFVNGDTDPW-HVLSVTQALGSSESTLLIRT 469

Protease that may play a role in T-cell development.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q9QXE5|TSSP_MOUSE Thymus-specific serine protease OS=Mus musculus GN=Prss16 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 85  ADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG---EGIYPDVDSTNIY 141
            DR W +Q CTE  F+          S      + L+LC+ VFG     +   V  TN Y
Sbjct: 368 GDRQWLYQTCTEFGFYVTCEGLQCPFSQLPALPFQLELCEQVFGLSPASVAQAVAQTNSY 427

Query: 142 YGGTKIAGSKIVFTNGSQDPW 162
           YGG     ++++F NG  DPW
Sbjct: 428 YGGQSPGATQVLFVNGDTDPW 448

Protease that may play a role in T-cell development.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|P34528|YM67_CAEEL Putative serine protease K12H4.7 OS=Caenorhabditis elegans GN=K12H4.7 PE=3 SV=2

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 61  GSFGASVQTYNQ--KRLKNTAVTDQSADRLWWFQVCTEVAFFQ------VAPANDSVRSS 112
           G FG +   YN     +K+    +  +DR W +Q CTE  ++Q        P    V  S
Sbjct: 341 GYFGCNDIDYNGFISFMKDETFGEAQSDRAWVWQTCTEFGYYQSTSSATAGPWFGGV--S 398

Query: 113 KVDTRYHLDLCKNVFG-----EGIYPDVDSTNIYYGGT-KIAGSKIVFTNGSQDPWRHAS 166
            +  +Y++D C  ++G     + +   VD TN YYGG   +   +I+  NG  DPW    
Sbjct: 399 NLPAQYYIDECTAIYGAAYNSQEVQTSVDYTNQYYGGRDNLNTDRILLPNGDIDPWHALG 458

Query: 167 KQTSS 171
           K TSS
Sbjct: 459 KLTSS 463

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|P90893|YM9I_CAEEL Putative serine protease F56F10.1 OS=Caenorhabditis elegans GN=F56F10.1 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 77  NTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEG-----I 131
           N    D +A R W +  C E+ F Q     ++V  + V     +D+C ++FG+      I
Sbjct: 364 NVLGPDGAAARGWMWLCCNEIGFLQTTNQGNNVFGTGVPLNLFIDMCTDMFGDSMKMSQI 423

Query: 132 YPDVDSTNIYYGGTKI-AGSKIVFTNGSQDPWR 163
                 +  YYGG      + +V  NGS DPW 
Sbjct: 424 MGGNKKSQNYYGGADFYNATNVVLPNGSLDPWH 456

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
255581402	482	catalytic, putative [Ricinus communis] g	0.972	0.371	0.832	4e-88
118487876	485	unknown [Populus trichocarpa]	0.972	0.369	0.798	1e-83
449457546	489	PREDICTED: probable serine protease EDA2	0.972	0.366	0.804	2e-83
449499944	486	PREDICTED: probable serine protease EDA2	0.972	0.368	0.804	2e-83
224097128	487	predicted protein [Populus trichocarpa]	0.972	0.367	0.798	2e-83
224108896	490	predicted protein [Populus trichocarpa]	0.972	0.365	0.798	4e-83
363814290	488	uncharacterized protein LOC100805858 pre	0.967	0.364	0.775	3e-81
357483671	478	Thymus-specific serine protease [Medicag	0.967	0.372	0.797	4e-81
357518131	455	Thymus-specific serine protease [Medicag	0.972	0.393	0.748	1e-80
224108892	242	predicted protein [Populus trichocarpa]	0.945	0.719	0.793	6e-80

>gi|255581402|ref|XP_002531509.1| catalytic, putative [Ricinus communis] gi|223528862|gb|EEF30863.1| catalytic, putative [Ricinus communis]

 Score =  328 bits (842), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 149/179 (83%), Positives = 170/179 (94%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F+AAELEI+GDFLYFLADAAV AFQYGNPDKLC+PLVEAK AGEDLV+AYAK+VKEYY+
Sbjct: 244 LFNAAELEIDGDFLYFLADAAVIAFQYGNPDKLCSPLVEAKKAGEDLVEAYAKYVKEYYV 303

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG SV+TYNQK LK+TA+ + S+DRLWWFQVCTEVA+FQVAP+NDS+RSSKV+TRYHL
Sbjct: 304 GSFGVSVETYNQKHLKDTAINENSSDRLWWFQVCTEVAYFQVAPSNDSIRSSKVNTRYHL 363

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           DLCKNVFGEGIYP+VD+TNIYYGGTKIAGSKIVFTNGSQDPWRHASKQ SSPD+  ++I
Sbjct: 364 DLCKNVFGEGIYPEVDTTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQISSPDTPSYII 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487876|gb|ABK95760.1| unknown [Populus trichocarpa]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 163/179 (91%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +FDAAELEI+GDFLYFLADAAV AFQYGNPD +C+ LV+AKN G+DLV+AYAK+VKEYYL
Sbjct: 247 LFDAAELEIDGDFLYFLADAAVIAFQYGNPDIVCSTLVKAKNNGDDLVEAYAKYVKEYYL 306

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           G+FG+SVQTYNQK LK+T++   + DRLWWFQVCTEVA+FQVAP+NDS+RSSKVD RYHL
Sbjct: 307 GTFGSSVQTYNQKYLKDTSLNKHTGDRLWWFQVCTEVAYFQVAPSNDSIRSSKVDARYHL 366

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           DLCKNVFGEGIYP+VD TNIYYGGT I+GSKIVF NGSQDPWRHASKQTSSPD   F+I
Sbjct: 367 DLCKNVFGEGIYPEVDVTNIYYGGTNISGSKIVFANGSQDPWRHASKQTSSPDMPSFLI 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457546|ref|XP_004146509.1| PREDICTED: probable serine protease EDA2-like [Cucumis sativus] gi|449499940|ref|XP_004160960.1| PREDICTED: probable serine protease EDA2-like isoform 1 [Cucumis sativus]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 161/179 (89%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F A ELEI+GDF Y LADAAV AFQYGNPD LC+PLV+AKNAG DLVDAYAK+VK+YY+
Sbjct: 250 LFGAGELEIDGDFFYLLADAAVIAFQYGNPDTLCSPLVQAKNAGNDLVDAYAKYVKDYYI 309

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG+SVQTYNQK LKNT   + SADRLWWFQVCTEVA+FQVAPANDS+RSSKVD +YHL
Sbjct: 310 GSFGSSVQTYNQKYLKNTTPGEDSADRLWWFQVCTEVAYFQVAPANDSMRSSKVDAKYHL 369

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           DLCKNVFGEG+YPDVD+TNIYYGGT IAGSKIVFTNGSQDPWRHASKQ SSP+   F++
Sbjct: 370 DLCKNVFGEGVYPDVDTTNIYYGGTGIAGSKIVFTNGSQDPWRHASKQISSPEMPSFLM 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499944|ref|XP_004160961.1| PREDICTED: probable serine protease EDA2-like isoform 2 [Cucumis sativus]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 161/179 (89%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F A ELEI+GDF Y LADAAV AFQYGNPD LC+PLV+AKNAG DLVDAYAK+VK+YY+
Sbjct: 250 LFGAGELEIDGDFFYLLADAAVIAFQYGNPDTLCSPLVQAKNAGNDLVDAYAKYVKDYYI 309

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG+SVQTYNQK LKNT   + SADRLWWFQVCTEVA+FQVAPANDS+RSSKVD +YHL
Sbjct: 310 GSFGSSVQTYNQKYLKNTTPGEDSADRLWWFQVCTEVAYFQVAPANDSMRSSKVDAKYHL 369

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           DLCKNVFGEG+YPDVD+TNIYYGGT IAGSKIVFTNGSQDPWRHASKQ SSP+   F++
Sbjct: 370 DLCKNVFGEGVYPDVDTTNIYYGGTGIAGSKIVFTNGSQDPWRHASKQISSPEMPSFLM 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097128|ref|XP_002310843.1| predicted protein [Populus trichocarpa] gi|222853746|gb|EEE91293.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 161/179 (89%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +FDAAELEI+GDFLYFLADAAV AFQYGNPDKLC PLV+AK  GEDLV+AYAK+VKE Y+
Sbjct: 249 LFDAAELEIDGDFLYFLADAAVIAFQYGNPDKLCPPLVQAKKDGEDLVEAYAKYVKEDYV 308

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG SVQTY+Q+ LK+T + + S DRLWWFQVCTEVA+FQVAPANDS+RSS+VDTRYHL
Sbjct: 309 GSFGVSVQTYDQRHLKDTTLNENSGDRLWWFQVCTEVAYFQVAPANDSIRSSQVDTRYHL 368

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           DLCK VFGEGIYP+VD TNIYYGGT +AGSKIVFTNGSQDPWRHASKQ SSPD   F++
Sbjct: 369 DLCKKVFGEGIYPEVDKTNIYYGGTNMAGSKIVFTNGSQDPWRHASKQISSPDMPSFVM 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108896|ref|XP_002333330.1| predicted protein [Populus trichocarpa] gi|222836225|gb|EEE74646.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (799), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 161/179 (89%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +FDAAELEI+GDFLYFLADAA TAFQYGNPDKLC PLV+AK  GEDLV+AYAK+VKE Y+
Sbjct: 252 LFDAAELEIDGDFLYFLADAAATAFQYGNPDKLCPPLVQAKKDGEDLVEAYAKYVKEDYV 311

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           GSFG SVQTY+Q+ LK+T + + S DRLWWFQVCTEVA+FQVAPANDS+RSS+VDTRYHL
Sbjct: 312 GSFGVSVQTYDQRHLKDTTLNENSGDRLWWFQVCTEVAYFQVAPANDSIRSSQVDTRYHL 371

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           DLCK VFGEGIYP+VD TNIYYGGT +AGSKIVFTNGSQDPWRHASKQ SSPD   F++
Sbjct: 372 DLCKKVFGEGIYPEVDKTNIYYGGTNMAGSKIVFTNGSQDPWRHASKQISSPDMPSFVM 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814290|ref|NP_001242784.1| uncharacterized protein LOC100805858 precursor [Glycine max] gi|255635884|gb|ACU18289.1| unknown [Glycine max]

 Score =  306 bits (783), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 138/178 (77%), Positives = 160/178 (89%)

Query: 2   FDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLG 61
           FDAA+LEI+GDF YFLADA   AFQYGNPDK+C PLVEAK AGEDLVDAYAK+VKEYY+G
Sbjct: 251 FDAADLEIDGDFFYFLADATAIAFQYGNPDKVCKPLVEAKKAGEDLVDAYAKYVKEYYIG 310

Query: 62  SFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLD 121
           +FG  VQTY+QK LK TA+ + ++ RLWWFQVCTEVA+FQVAP+NDS+RSSKVD +YH D
Sbjct: 311 TFGTDVQTYDQKYLKRTAMNEDNSARLWWFQVCTEVAYFQVAPSNDSIRSSKVDIKYHFD 370

Query: 122 LCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           LCKNVFGEGI+PDVD+TN+YYGGTKIAGSKI+FTNGSQDPWRHASKQTSSPD   +++
Sbjct: 371 LCKNVFGEGIFPDVDATNLYYGGTKIAGSKIIFTNGSQDPWRHASKQTSSPDMPSYIV 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483671|ref|XP_003612122.1| Thymus-specific serine protease [Medicago truncatula] gi|355513457|gb|AES95080.1| Thymus-specific serine protease [Medicago truncatula]

 Score =  305 bits (782), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 159/178 (89%)

Query: 2   FDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLG 61
           F+AA+LEI+GDFLYFLADAAVTAFQYGNPD LC PLV+AK  GEDLVDAYAKF+KE+YLG
Sbjct: 241 FNAADLEIDGDFLYFLADAAVTAFQYGNPDILCKPLVKAKKDGEDLVDAYAKFIKEFYLG 300

Query: 62  SFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLD 121
           + G S Q YNQ  LKN A+T+ S+ RLWWFQVCTEVA+FQVAP+NDS+RSSKVDTRYHLD
Sbjct: 301 TEGESTQDYNQNNLKNAAITENSSGRLWWFQVCTEVAYFQVAPSNDSIRSSKVDTRYHLD 360

Query: 122 LCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           LCKNVFGEGI+PDVD+TNIYYGGTKIAGSKIVFTNGSQDPWR ASKQ SSP+   + I
Sbjct: 361 LCKNVFGEGIFPDVDATNIYYGGTKIAGSKIVFTNGSQDPWRRASKQISSPNMPSYTI 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518131|ref|XP_003629354.1| Thymus-specific serine protease [Medicago truncatula] gi|355523376|gb|AET03830.1| Thymus-specific serine protease [Medicago truncatula]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 166/179 (92%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
           +F+A +LEI+GDFLY+LADAAV AFQYGNPDKLC PLV+AKNAGEDLVDAYAK+VKEYY+
Sbjct: 217 IFNADDLEIDGDFLYYLADAAVIAFQYGNPDKLCKPLVDAKNAGEDLVDAYAKYVKEYYV 276

Query: 61  GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
           G+FG + ++Y+Q+ LK TA+ + S+ RLWWFQVCTEVA+FQVAP+NDS+RSSK+DT+YHL
Sbjct: 277 GTFGITPKSYDQEYLKKTAINEDSSTRLWWFQVCTEVAYFQVAPSNDSIRSSKIDTKYHL 336

Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           DLCKN+FG+G++PDVD+TN+YYGGTK+AGSKI+FTNGSQDPWRHASKQTSSPD   ++I
Sbjct: 337 DLCKNIFGDGVFPDVDATNLYYGGTKVAGSKIIFTNGSQDPWRHASKQTSSPDLPSYLI 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108892|ref|XP_002333329.1| predicted protein [Populus trichocarpa] gi|222836224|gb|EEE74645.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (772), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 138/174 (79%), Positives = 158/174 (90%)

Query: 6   ELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGA 65
           +LEI+GDFLYFLADAAV AFQYGNPD +C+ LV+AKN G+DLV+AYAK+VKEYYLG+FG+
Sbjct: 9   QLEIDGDFLYFLADAAVIAFQYGNPDIVCSTLVKAKNNGDDLVEAYAKYVKEYYLGTFGS 68

Query: 66  SVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKN 125
           SVQTYNQK LK+T++   + DRLWWFQVCTEVA+FQVAP+NDS+RSSKVD RYHLDLCKN
Sbjct: 69  SVQTYNQKYLKDTSLNKHTGDRLWWFQVCTEVAYFQVAPSNDSIRSSKVDARYHLDLCKN 128

Query: 126 VFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
           VFGEGIYP+VD TNIYYGGT I+GSKIVF NGSQDPWRHASKQTSSPD   F+I
Sbjct: 129 VFGEGIYPEVDVTNIYYGGTNISGSKIVFANGSQDPWRHASKQTSSPDMPSFLI 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2122249	482	AT4G36190 [Arabidopsis thalian	0.967	0.369	0.681	5.6e-68
TAIR|locus:505006564	488	AT4G36195 [Arabidopsis thalian	0.972	0.366	0.653	6.5e-67
TAIR|locus:2060959	489	EDA2 "embryo sac development a	0.972	0.366	0.603	1.9e-60
DICTYBASE|DDB_G0290139	476	DDB_G0290139 "peptidase S28 fa	0.842	0.325	0.389	8.5e-27
DICTYBASE|DDB_G0278299	635	DDB_G0278299 "peptidase S28 fa	0.804	0.233	0.314	2.6e-16
DICTYBASE|DDB_G0290409	469	DDB_G0290409 "peptidase S28 fa	0.788	0.309	0.301	7.6e-15
WB|WBGene00003957	1080	pcp-2 [Caenorhabditis elegans	0.831	0.141	0.301	3.3e-12
UNIPROTKB|F2Z2N5	257	PRSS16 "Thymus-specific serine	0.521	0.373	0.362	1.5e-10
DICTYBASE|DDB_G0274663	487	DDB_G0274663 "peptidase S28 fa	0.820	0.310	0.245	3e-10
UNIPROTKB|Q9NQE7	514	PRSS16 "Thymus-specific serine	0.521	0.186	0.362	8.7e-10

TAIR|locus:2122249 AT4G36190 [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 122/179 (68%), Positives = 153/179 (85%)

Query:     1 MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
             +F+A EL+++ DFLY +ADA V A QYGNPDKLC PLVEA+  G DLV+AYAK+V+E+ +
Sbjct:   250 LFNATELDVDADFLYLIADAGVMAIQYGNPDKLCVPLVEAQKNGGDLVEAYAKYVREFCM 309

Query:    61 GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
             G FG S +TY++K L +TAVT +SADRLWWFQVCTEVA+FQVAPANDS+RS +++T YHL
Sbjct:   310 GVFGQSSKTYSRKHLLDTAVTLESADRLWWFQVCTEVAYFQVAPANDSIRSHQINTEYHL 369

Query:   121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPD-SKYFM 178
             DLCK++FG+G+YP+VD+TN+YYG  KIA +KI+FTNGSQDPWRHASKQTSSPD   Y M
Sbjct:   370 DLCKSLFGKGVYPEVDATNLYYGSDKIAATKIIFTNGSQDPWRHASKQTSSPDLPSYIM 428

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:505006564 AT4G36195 [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 117/179 (65%), Positives = 154/179 (86%)

Query:     1 MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
             +F+A EL+++ DFLY +ADA V A QYGNPDKLC PLVEA+   +DLV+AYAK+V+E+ +
Sbjct:   250 LFNATELDVDADFLYLIADAEVMAIQYGNPDKLCVPLVEAQKNRDDLVEAYAKYVREFCV 309

Query:    61 GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
             G FG S +TY++K L +TAVT +SADRLWWFQVCTEVA+FQVAPANDS+RS +++T YHL
Sbjct:   310 GVFGLSSKTYSRKHLLDTAVTPESADRLWWFQVCTEVAYFQVAPANDSIRSHQINTEYHL 369

Query:   121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
             DLCK++FG+G+YP+VD+TN+YYG  +IA +KI+FTNGSQDPWRHASKQTSSP+   +++
Sbjct:   370 DLCKSLFGKGVYPEVDATNLYYGSDRIAATKIIFTNGSQDPWRHASKQTSSPELPSYIV 428

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2060959 EDA2 "embryo sac development arrest 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 108/179 (60%), Positives = 142/179 (79%)

Query:     1 MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
             +F+A EL+++ DFLY  ADAAV AFQYGNPDKLC PLVEAK  G DLV  Y+ +V+EY +
Sbjct:   251 LFNATELDVDADFLYLTADAAVMAFQYGNPDKLCVPLVEAKKNGSDLVVTYSTYVREYCM 310

Query:    61 GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
               +G  V+TYN+K L+NT VT  SA RLWWFQ CTE+ +FQVAP  DSVRS +++T +HL
Sbjct:   311 RIWGLRVRTYNRKHLRNTVVTADSAYRLWWFQACTELGYFQVAPKYDSVRSHQINTTFHL 370

Query:   121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMI 179
             DLCK++FG+ +YP VD+TN+YYGG ++A +KI+FTNGS+DPWRHASKQ S+ +   ++I
Sbjct:   371 DLCKSLFGKDVYPKVDATNLYYGGDRLAATKIIFTNGSEDPWRHASKQNSTHEMPSYII 429

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA;ISS

GO:0009561 "megagametogenesis" evidence=IMP

GO:0010584 "pollen exine formation" evidence=RCA

DICTYBASE|DDB_G0290139 DDB_G0290139 "peptidase S28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 304 (112.1 bits), Expect = 8.5e-27, P = 8.5e-27
 Identities = 65/167 (38%), Positives = 99/167 (59%)

Query:    11 GDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQT- 69
             GDF Y+LAD+ +   QYG  D+LC+PLV+A N+G   +D    +   Y + ++G  + T 
Sbjct:   253 GDFFYWLADSMMEGDQYGYIDELCSPLVDAINSGTSGIDLITVY-SNYTINTWGKVLGTP 311

Query:    70 --YNQKRLKN-TAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNV 126
               Y+    +N T    +SADR WW+Q C+ + + Q AP+ +S+RSS V+  Y    C+ +
Sbjct:   312 DEYSTAWQQNVTYDPSKSADRAWWYQTCSSLGWMQAAPSENSIRSSLVNMTYFQTHCQQL 371

Query:   127 FGEGIYP-DVDSTNIYYGGTK------IAGSKIVFTNGSQDPWRHAS 166
             FG+ I+P +V++ N  YGG +       AG+ I+FTNG  DPW  AS
Sbjct:   372 FGQAIWPPNVNAVNTQYGGDQSNPLLNAAGTNILFTNGHADPWSQAS 418

GO:0005615 "extracellular space" evidence=IDA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0278299 DDB_G0278299 "peptidase S28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 212 (79.7 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 49/156 (31%), Positives = 76/156 (48%)

Query:    13 FLYFLADAAVTAFQYGNPDKL----CTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQ 68
             FLY L++A   + QY    K+    C   V+  N+ E L+D ++ +VK  +L     S  
Sbjct:   285 FLYLLSEALTYSVQYDARFKIISGFCPKFVKLTNSSEALLDMFSSYVKNMFLFQ-NVSCD 343

Query:    69 TYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKV-DTRYHLDLCKNVF 127
              YN     +  + D S  R W +Q+C E  +F V    DS +   + +  +  D+CK ++
Sbjct:   344 AYNLYEFASNEI-DYSGTRSWTWQLCREYGWFMVPSGPDSFKPQSLGECWWQNDVCKTLY 402

Query:   128 GEGIYPDVDSTNIYYGGTKIAG-SKIVFTNGSQDPW 162
             G  + P VD  N+ YG T     S ++FTN   DPW
Sbjct:   403 GRAMRPTVDRINMVYGSTNFKYISNVLFTNCGNDPW 438

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

DICTYBASE|DDB_G0290409 DDB_G0290409 "peptidase S28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 196 (74.1 bits), Expect = 7.6e-15, P = 7.6e-15
 Identities = 47/156 (30%), Positives = 79/156 (50%)

Query:    13 FLYFLADAAVTAFQYGNP-----DKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASV 67
             FLY + DA   + Q  NP     +  C  L++  N     V+ +A+ V           +
Sbjct:   264 FLYSITDALGGSDQMNNPPTWILNSTCQMLLQNTN----YVNNWAQIVNVGQTQCNDFRL 319

Query:    68 QTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVF 127
             +++ ++ L++ ++ D S +R+W +Q C E  +F  A    SV    ++       C+ ++
Sbjct:   320 KSFIEQ-LRDISINDNSDNRMWTYQTCVEFGYFSTAYPGTSVFPPVLNVEEQTKWCEEIY 378

Query:   128 G-EGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPW 162
                G+ P++D+TN YYGG  I GS I+FTNG  DPW
Sbjct:   379 DIPGMTPNIDATNNYYGGQNIQGSNIMFTNGLLDPW 414

GO:0005615 "extracellular space" evidence=IDA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00003957 pcp-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 177 (67.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 51/169 (30%), Positives = 77/169 (45%)

Query:    10 EGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGS---FGAS 66
             +GD  Y   +    A  YG PD +C  +    N   + + A+ +++  +Y G    FG  
Sbjct:   804 QGDVQYSGDNMGSYANSYGIPD-MCKIMTNDSNTPLNNIVAFNEYMANFYNGGGPYFGLD 862

Query:    67 VQTYNQ--KRLKNTAV--TDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDL 122
               +Y      L N      D  A  LW +Q C+E  +FQ A + + +  S     + + +
Sbjct:   863 -NSYQDMINFLINAKDFGPDAEASLLWTWQTCSEFGYFQSADSGNGIFGSPTPVNFFIQI 921

Query:   123 CKNVFGE-----GIYPDVDSTNIYYGGT-KIAGSKIVFTNGSQDPWRHA 165
             C +VF        I P VD+TN  YG      GS +VF NG++DPW HA
Sbjct:   922 CMDVFNNYYQRSAIDPMVDNTNYMYGERFHFRGSNVVFPNGNKDPW-HA 969

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F2Z2N5 PRSS16 "Thymus-specific serine protease" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 37/102 (36%), Positives = 49/102 (48%)

Query:    86 DRLWWFQVCTEVAFFQVAPANDSVRSSKVDTR-YHLDLCKNVFGEG---IYPDVDSTNIY 141
             DR W +Q CTE  F+ V   N     S++      LDLC+ VFG     +   V  TN Y
Sbjct:   113 DRQWLYQTCTEFGFY-VTCENPRCPFSQLPALPSQLDLCEQVFGLSALSVAQAVAQTNSY 171

Query:   142 YGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMIIFRT 183
             YGG     +K++F NG  DPW H    T +  S    ++ RT
Sbjct:   172 YGGQTPGANKVLFVNGDTDPW-HVLSVTQALGSSESTLLIRT 212

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

DICTYBASE|DDB_G0274663 DDB_G0274663 "peptidase S28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 154 (59.3 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 40/163 (24%), Positives = 78/163 (47%)

Query:    25 FQYGNPDKLCTPLVEAKNAGEDLVD---AYAKFV-KEYYLGSFGASVQTYNQKRLKNTAV 80
             + + N   +C    ++ +  ++ +D    Y +F   +  L S+  S+Q       K+   
Sbjct:   291 YTFTNITAMCERFEQSSDPMKEFIDFNNEYNQFSGSQCTLSSYEKSIQYLQSSNYKSA-- 348

Query:    81 TDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG-EG-IY-PDVDS 137
                ++ R W +Q CTE  ++Q   + +   SS +   Y   +C ++FG +G +Y P +  
Sbjct:   349 --NASSRSWNWQCCTEYGYWQTGSSQNQPFSSAITLEYFTQMCTDIFGPKGFVYQPAIQY 406

Query:   138 TNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTS-SPDSKYFMI 179
                 YGGT I  + +++  G+ DPW   S Q+  + +S+ F+I
Sbjct:   407 ILNDYGGTNIQATNVIYERGTIDPWSVLSVQSPPNSESQVFLI 449

GO:0005615 "extracellular space" evidence=IDA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9NQE7 PRSS16 "Thymus-specific serine protease" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 8.7e-10, P = 8.7e-10
 Identities = 37/102 (36%), Positives = 49/102 (48%)

Query:    86 DRLWWFQVCTEVAFFQVAPANDSVRSSKVDTR-YHLDLCKNVFGEG---IYPDVDSTNIY 141
             DR W +Q CTE  F+ V   N     S++      LDLC+ VFG     +   V  TN Y
Sbjct:   370 DRQWLYQTCTEFGFY-VTCENPRCPFSQLPALPSQLDLCEQVFGLSALSVAQAVAQTNSY 428

Query:   142 YGGTKIAGSKIVFTNGSQDPWRHASKQTSSPDSKYFMIIFRT 183
             YGG     +K++F NG  DPW H    T +  S    ++ RT
Sbjct:   429 YGGQTPGANKVLFVNGDTDPW-HVLSVTQALGSSESTLLIRT 469

GO:0006508 "proteolysis" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0030163 "protein catabolic process" evidence=NAS

GO:0005764 "lysosome" evidence=IDA

GO:0005768 "endosome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_4620002 hypothetical protein (490 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam05577	433	pfam05577, Peptidase_S28, Serine carboxypeptidase	1e-16

>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 16/154 (10%)

Query: 31  DKLCTPLVEAKNAGEDLVDAYAKFVKEY---YLGSFGASVQTYNQKRLKNTAVTDQS--- 84
             LC  ++ A      L       +  Y     G+      +Y    L N +  D S   
Sbjct: 247 PDLCKIMLNATTTDLILRVEVLIQLFNYLNQKSGNNSTMDISYQ---LANASYGDSSGSY 303

Query: 85  -ADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG-----EGIYPDVDST 138
             DR W +Q CTE  ++Q   + +    S V     +D+C +VFG       I   V +T
Sbjct: 304 ADDRQWTWQTCTEFGWYQTTDSGNGPFGSPVPASLFIDMCMDVFGADYNSTKISLRVSAT 363

Query: 139 NIYYGGT-KIAGSKIVFTNGSQDPWRHASKQTSS 171
           N YYGG      + +VF NG  DPW    K  S+
Sbjct: 364 NYYYGGADNPNATNVVFVNGDLDPWHALGKTDST 397

These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase. Length = 433

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG2182	514	consensus Hydrolytic enzymes of the alpha/beta hyd	100.0
PF05577	434	Peptidase_S28: Serine carboxypeptidase S28; InterP	100.0
KOG2183	492	consensus Prolylcarboxypeptidase (angiotensinase C	99.97
PF05576	448	Peptidase_S37: PS-10 peptidase S37; InterPro: IPR0	97.77

>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=100.00  E-value=2.6e-39  Score=275.68  Aligned_cols=168  Identities=35%  Similarity=0.559  Sum_probs=136.2

Q ss_pred             HHHHHHHHhHhhhccCC-----------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcC-CCcccccc--ccccccC
Q 030040           13 FLYFLADAAVTAFQYGN-----------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSF-GASVQTYN--QKRLKNT   78 (184)
Q Consensus        13 f~~~i~~~~~~~~Qy~~-----------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~   78 (184)
                      |+..|.+.|+++|||.+           ++++|+.|++.  ...+.+.++.++++.+.+... ++....|+  +..++++
T Consensus       277 ff~nv~~~FqgvvQY~gd~~~~~~~~~~i~~~C~~l~n~--t~~d~v~~~~~~~~~~~~~~~~~c~~~~Y~~~i~~~~n~  354 (514)
T KOG2182|consen  277 FFSNVYSNFQGVVQYSGDNSNATASGLGIPAMCDILNNK--TPGDDVVAVNKYMNWFNNGFGYGCLDNTYNGMISYLKNS  354 (514)
T ss_pred             HHHHHHHhhhhheeecCCCCcccccccChhHHHHHhhcC--CCCchHHHHHHHHHHHHhccCCCcCCccHHHHHHHhhcc
Confidence            88999999999999964           46799999983  334568899888887664431 12223343  2345543


Q ss_pred             CCC--CCCCCcceeccccccccccccCCCCCCCCcccCChhhHHHHhHHhcC-----CCCCCChHHHHHhcCC-CCCCCC
Q 030040           79 AVT--DQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG-----EGIYPDVDSTNIYYGG-TKIAGS  150 (184)
Q Consensus        79 ~~~--~~~~~r~W~~QtCtE~g~fqt~~~~~~~~~~~~~~~~~~~~C~~~Fg-----~~~~~~v~~~n~~yGG-~~~~~s  150 (184)
                      ...  ...++|+|+||||||||||||+++++.+|++.++++||+++|+++||     ..+.+.|+.||.+||| .+++++
T Consensus       355 ~~~~~~~~a~r~W~wQtCtEfG~yQttds~~~iFgs~vp~~~fid~C~dlFG~~y~~~~i~~~V~~TN~~YGG~~~~~at  434 (514)
T KOG2182|consen  355 TEPGEDAAADRLWTWQTCTEFGYYQTTDSGNSIFGSTVPLDYFIDLCMDLFGAEYTAKGIDPNVDQTNYKYGGRDNYNAT  434 (514)
T ss_pred             cCcCcccccchhhhhhhcccceeeEecCCCCccccCCCChHHHHHHHHHHhCchhhhhHHHHHHHHhhhhcCcccccCcc
Confidence            332  23578999999999999999999988899999999999999999999     4578889999999999 689999


Q ss_pred             eEEEECCCCCCcccCccCCC-CCCCceEEEecC
Q 030040          151 KIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFR  182 (184)
Q Consensus       151 niiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~  182 (184)
                      ||+|+||++||||+||...+ ..++++++|.|.
T Consensus       435 nVvf~NG~~DPWh~LG~~~st~~~~~~~li~gt  467 (514)
T KOG2182|consen  435 NVVFPNGSLDPWHALGLQNSTDSSVVSILINGT  467 (514)
T ss_pred             eEEecCCCCCchhhhccccCCCCCceEEEecCC
Confidence            99999999999999999876 578889999774

>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=4.8e-36  Score=259.53  Aligned_cols=169  Identities=33%  Similarity=0.520  Sum_probs=98.0

Q ss_pred             HHHHHHHHhHhhhccCC------------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcCC---Cccccccc----c
Q 030040           13 FLYFLADAAVTAFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFG---ASVQTYNQ----K   73 (184)
Q Consensus        13 f~~~i~~~~~~~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~----~   73 (184)
                      |+..++..++.++||++            +..+|+.|++..  ..+.+.++..+.+.+......   ..+..+..    .
T Consensus       217 ~~~~~~~~~~~~~qy~~~~~~~~~~~~~~i~~~C~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (434)
T PF05577_consen  217 FFSSIADAFQGMVQYPYPGNFNSPLPAWPIRQLCDSLTNAS--WPDEVLRLAALAQWYNNFNTTCYSNSCADFDYNCFDS  294 (434)
T ss_dssp             HHHHHHHHHHHHT--SS-EESSSEE-SSHHHHHHHHCHTSS--SHHHHHHHHHHHHHHCCCH-SCCHHCCC--SS-BSST
T ss_pred             HHHHHHHHHHHHHhcCCCcccccCCCCcchHHHhhhhcccc--cCchhHHHHHHHHHHHHhcCccccccccccccccccC
Confidence            55567788888999953            478999998753  223334444443332111100   01111110    0


Q ss_pred             ccccCCCCCCCCCcceeccccccccccccCCCCCCCCcccCChhhHHHHhHHhcCCC-----CCCChHHHHHhcCC-CCC
Q 030040           74 RLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEG-----IYPDVDSTNIYYGG-TKI  147 (184)
Q Consensus        74 ~~~~~~~~~~~~~r~W~~QtCtE~g~fqt~~~~~~~~~~~~~~~~~~~~C~~~Fg~~-----~~~~v~~~n~~yGG-~~~  147 (184)
                      .....++++..++|+|.||+|||||||||+++..++|++.+++++++++|+++||..     +.++++++|.+||| +++
T Consensus       295 ~~~~~~~~~~~~~R~W~wQtCtE~G~fqt~~~~~~l~~~~~~l~~~~~~C~~~Fg~~~~~~~i~~~~~~tN~~YGG~~~~  374 (434)
T PF05577_consen  295 TYDDSSFDDNADDRQWLWQTCTEFGYFQTADGPNSLFSRLVNLDYYQDQCQDVFGPGPNPESIPPNVDWTNNYYGGWWNP  374 (434)
T ss_dssp             T---SS----HHHHHHHHHHCCT-B----B-SSSSSS-B---HHHHHHHHHHHHS----T------TCHHHHHHTTT--T
T ss_pred             CCCcccccccccchhhHHHhhhhccceeccCCCCCcccCCCCHHHHHHHHHHHhCCCccccccccchhHHhheeCccccC
Confidence            111111112235799999999999999999888889999999999999999999853     45589999999999 899


Q ss_pred             CCCeEEEECCCCCCcccCccCCC-CCCCceEEEecCC
Q 030040          148 AGSKIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFRT  183 (184)
Q Consensus       148 ~~sniiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~~  183 (184)
                      +++||+||||++||||.+|+.++ +.++++++||++.
T Consensus       375 ~~tnviFtNG~~DPW~~lgv~~~~~~~~~~~~I~g~~  411 (434)
T PF05577_consen  375 NATNVIFTNGELDPWRALGVTSDSSDSVPAIVIPGGA  411 (434)
T ss_dssp             T--SEEEEEETT-CCGGGS--S-SSSSEEEEEETT--
T ss_pred             CCCeEEeeCCCCCCcccccCCCCCCCCcccEEECCCe
Confidence            99999999999999999999876 7889999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.

>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.97  E-value=8.1e-32  Score=225.30  Aligned_cols=175  Identities=22%  Similarity=0.325  Sum_probs=143.3

Q ss_pred             CCC-CcCC-ChHHHHHHHHHHhHhhh--ccCC------------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcCCC
Q 030040            2 FDA-AELE-IEGDFLYFLADAAVTAF--QYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGA   65 (184)
Q Consensus         2 Fg~-~~l~-~~~df~~~i~~~~~~~~--Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~   65 (184)
                      |++ .+|. +..++..+|.+++..++  +|.+            ++++|..|.....+..++++++.+.++.+||++  +
T Consensus       257 f~lc~~ln~d~~~l~d~l~ea~~ylAMVdYPy~t~Fl~pLPa~PV~~~C~~i~~~~~~~~~ll~~i~a~~~~yyNyt--g  334 (492)
T KOG2183|consen  257 FKLCKPLNDDIGDLKDYLREAYEYLAMVDYPYPTSFLAPLPAWPVKVVCKYINAPGPNDSDLLDRIFAAVNLYYNYT--G  334 (492)
T ss_pred             hhhcccccccHHHHHHHHHHHHHHHHHhcCCCCccccCcCCCCcHHHHHHHhccCCCChHHHHHHHHHHhhheeccC--C
Confidence            554 6666 45668888987776654  5544            368999998765555789999999999999875  5


Q ss_pred             ccccccccccccCCCCCCCCCcceeccccccccccccCCCCC-CCCcccCChhhHHHHhHHhcCCCCCCChHHHHHhcCC
Q 030040           66 SVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPAND-SVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGG  144 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~r~W~~QtCtE~g~fqt~~~~~-~~~~~~~~~~~~~~~C~~~Fg~~~~~~v~~~n~~yGG  144 (184)
                      +..||+..   +.+..+..+.|.|.||+|||+.+..+++..+ ++....++.+.+++.|.+.||  +.|+++|++.+|||
T Consensus       335 ~~~C~d~s---d~t~~~~~d~~gW~~QaCtEmVMp~~~ng~~~mf~~~~fn~~~y~e~C~~~~~--v~prP~wi~t~fgg  409 (492)
T KOG2183|consen  335 SEKCYDIS---DPTYGSGLDDLGWPWQACTEMVMPMCSNGVDDMFPDCPFNSESYQEGCMQTFG--VTPRPKWITTEFGG  409 (492)
T ss_pred             Ccchhccc---cccCCCCCCcCCCchhhhhhhhhccccCCCcccCCCCCCCHHHHHHHHHHhcC--CCCCCcceehhhcc
Confidence            66788864   2223334567999999999999999988764 556678999999999999999  89999999999999


Q ss_pred             CCCC-CCeEEEECCCCCCcccCccCCC-CCCCceEEEecCC
Q 030040          145 TKIA-GSKIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFRT  183 (184)
Q Consensus       145 ~~~~-~sniiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~~  183 (184)
                      .++. .|||||+||.+|||+.+||++. +.++++++|++|.
T Consensus       410 ~~l~~~SNiIFSNG~LDPWSGGGV~~nis~svvav~~k~GA  450 (492)
T KOG2183|consen  410 ADLSAFSNIIFSNGLLDPWSGGGVLKNISDSVVAVTIKEGA  450 (492)
T ss_pred             ccchhhcceeeeCCCcCCccCcCeeccccCcEEEEEecCCc
Confidence            8874 6899999999999999999887 8899999999885

>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.77  E-value=0.00014  Score=62.53  Aligned_cols=144  Identities=17%  Similarity=0.317  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhHhhhccCChhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcCCCccccccccccccCCCCCCCCCcceec
Q 030040           12 DFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWF   91 (184)
Q Consensus        12 df~~~i~~~~~~~~Qy~~~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~W~~   91 (184)
                      -|-..+-+..-..|||+... -|+.|-....+..  -+.+.+++...-      ....     +++..+   ..-....|
T Consensus       233 a~E~~VLe~~faFWQy~~~~-~C~~IP~~~~~As--ddeL~~~l~~is------g~s~-----ysDq~l---~~y~pyyy  295 (448)
T PF05576_consen  233 AYEYAVLEYPFAFWQYGTPA-DCASIPADAKTAS--DDELFDFLDAIS------GFSF-----YSDQGL---EPYTPYYY  295 (448)
T ss_pred             HHHHHHhhhhhHhhccCCcc-chhcCCCCcCCCC--HHHHHHHHHhhc------Cccc-----cccCCc---ccccChHH
Confidence            34444444333688998655 7887743211111  122333332110      1222     222221   12357999


Q ss_pred             cccccccccccCCCCCCCCcccCChhhHHHHhHHh---------cCCCCCCChHHHHHhcCCCCCCCCeEEEECCCCCCc
Q 030040           92 QVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNV---------FGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPW  162 (184)
Q Consensus        92 QtCtE~g~fqt~~~~~~~~~~~~~~~~~~~~C~~~---------Fg~~~~~~v~~~n~~yGG~~~~~sniiftnG~~DPW  162 (184)
                      |.=||+||+...-+  .+...++...+.   =...         |.+...++|+..-..      +++|+||++|+.|||
T Consensus       296 QA~teLG~p~~~~~--hl~~~ll~~g~~---~~r~fvP~~i~m~Fdp~am~dI~~Wvr~------~~~rmlFVYG~nDPW  364 (448)
T PF05576_consen  296 QAGTELGYPGYDTP--HLRKKLLRYGYQ---PPRNFVPRDIPMKFDPTAMRDIDRWVRN------NGPRMLFVYGENDPW  364 (448)
T ss_pred             HHHhhcCCCCCCCc--chhccccccCCC---CcccCCCCCCCCCcCHHHHHHHHHHHHh------CCCeEEEEeCCCCCc
Confidence            99999999765322  111111111110   0122         222122234433332      569999999999999


Q ss_pred             ccCccCC--CCCCCceEEEecCC
Q 030040          163 RHASKQT--SSPDSKYFMIIFRT  183 (184)
Q Consensus       163 ~~~g~~~--~s~~~~~~~I~~~~  183 (184)
                      .+.++.-  ...+.-+++.||+|
T Consensus       365 ~A~~f~l~~g~~ds~v~~~Pggn  387 (448)
T PF05576_consen  365 SAEPFRLGKGKRDSYVFTAPGGN  387 (448)
T ss_pred             ccCccccCCCCcceEEEEcCCCc
Confidence            9999853  35566777788886

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
3jyh_A	469	Dipeptidyl-peptidase 2; structural genomics, struc	1e-24
3n2z_B	446	Lysosomal Pro-X carboxypeptidase; alpha/beta hydro	5e-21

>3jyh_A Dipeptidyl-peptidase 2; structural genomics, structural genomics consortium, SGC, aminopeptidase, cleavage on PAIR of basic residues; HET: NAG BMA; 2.19A {Homo sapiens} PDB: 3n0t_A* Length = 469

 Score = 98.5 bits (244), Expect = 1e-24
 Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 19/198 (9%)

Query: 1   MFDAAELEIEGDFLYFLADAAVTAF------QYGNPDKLCTPL--------VEAKNAGED 46
            F   +   +   L  L   A  AF       Y  P     PL         +   +   
Sbjct: 219 EFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQ 278

Query: 47  LVDAYAKFVKEYYLGSFGASVQTYNQKRLKN---TAVTDQSADRLWWFQVCTEVAFFQVA 103
            +          Y  S         +        T        R W +Q CTE+     +
Sbjct: 279 RITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFAS 338

Query: 104 PA-NDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPW 162
               D               C + +G    PD      ++GG   A S I+F+NG+ DPW
Sbjct: 339 NNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWL-LTSFWGGDLRAASNIIFSNGNLDPW 397

Query: 163 RHASKQTSSPDSKYFMII 180
                + +   S   + I
Sbjct: 398 AGGGIRRNLSASVIAVTI 415

>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} Length = 446

 Score = 88.0 bits (217), Expect = 5e-21
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 10/168 (5%)

Query: 15  YFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKR 74
           Y  A   +          +C  L     +   L+    + +  YY               
Sbjct: 246 YPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYY-----NYSGQVKCLN 300

Query: 75  LKNTAVTDQSADRLWWFQVCTEVA-FFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYP 133
           +  TA T       W +Q CTEV   F     +D       + +   D C   +G  + P
Sbjct: 301 ISETA-TSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG--VRP 357

Query: 134 DVDSTNIYYGGTKI-AGSKIVFTNGSQDPWRHASKQTSSPDSKYFMII 180
                   YGG  I + + IVF+NG  DPW          D+   + I
Sbjct: 358 RPSWITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTI 405

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
3n2z_B	446	Lysosomal Pro-X carboxypeptidase; alpha/beta hydro	100.0
4ebb_A	472	Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2	99.97

>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}

Probab=100.00  E-value=2.4e-37  Score=267.23  Aligned_cols=174  Identities=21%  Similarity=0.310  Sum_probs=136.6

Q ss_pred             CCCC-CcCCChHH---HHHHHHHHhHh--hhccCC------------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCc
Q 030040            1 MFDA-AELEIEGD---FLYFLADAAVT--AFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGS   62 (184)
Q Consensus         1 ~Fg~-~~l~~~~d---f~~~i~~~~~~--~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~   62 (184)
                      +|++ ++|++ .|   |+++|+++|+.  ++||.+            ++.+|+.|++...+..+++++++++++.+++.+
T Consensus       215 ~F~lc~~l~~-~D~~~~~~~l~~~~~~~a~~~y~~~~~~~~~~p~~~v~~~C~~l~~~~~~~~~~~~~~~~~~~~~~n~~  293 (446)
T 3n2z_B          215 ALHLCSPLTS-QDIQHLKDWISETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYS  293 (446)
T ss_dssp             HTTBSSCCCT-TSHHHHHHHHHHHHHHHHHTCCSSCEESSSEECSSHHHHHHHHSCCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCCCCCH-HHHHHHHHHHHHHHhhhhhcccccccccccCCCCccHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcC
Confidence            4886 77764 44   66788998875  566653            368999998654344567899999998887643


Q ss_pred             CCCccccccccccccCCCCCCCCCcceeccccccccccccCCCCCCCC-cccCChhhHHHHhHHhcCCCCCCChHHHHHh
Q 030040           63 FGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVR-SSKVDTRYHLDLCKNVFGEGIYPDVDSTNIY  141 (184)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~r~W~~QtCtE~g~fqt~~~~~~~~-~~~~~~~~~~~~C~~~Fg~~~~~~v~~~n~~  141 (184)
                        ....|++...-.   . ...++|+|.||+|||||||||+++...+| +++++++++.++|+++||  +.|+++++|.+
T Consensus       294 --~~~~C~~~~~~~---~-~~~~~r~W~yQ~CtE~g~~~t~~~~~~~f~~~~~~~~~~~~~C~~~Fg--~~p~~~~~~~~  365 (446)
T 3n2z_B          294 --GQVKCLNISETA---T-SSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG--VRPRPSWITTM  365 (446)
T ss_dssp             --SCCSSBCCCC--------CHHHHHHHHHHHHTCCCCCCBCSSSSSSCCBCCCHHHHHHHHHHHHS--CCCCTTHHHHH
T ss_pred             --CCCCCcCcCcCc---C-CCccccceeeeecCCccccccCCCCCCcCcCCcCCHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence              234566542211   1 12346999999999999999987655555 668999999999999999  78999999999


Q ss_pred             cCCCCC-CCCeEEEECCCCCCcccCccCCC-CCCCceEEEecCC
Q 030040          142 YGGTKI-AGSKIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFRT  183 (184)
Q Consensus       142 yGG~~~-~~sniiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~~  183 (184)
                      |||+++ .+|||||+||++||||.+|++++ ++++++++||++.
T Consensus       366 yGG~~~~~~sniif~NG~~DPW~~~gv~~~~s~~~~a~~i~~~a  409 (446)
T 3n2z_B          366 YGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGA  409 (446)
T ss_dssp             HCTTCCTTCCCEEEEEESSCGGGGGSCCSCSSSSEEEEEETTCC
T ss_pred             hccccCCCCCeEEEeCCCcCCccccccccCCCCCceEEEeCCCc
Confidence            999995 68999999999999999999876 7899999999874

>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*

Probab=99.97  E-value=3.2e-31  Score=230.56  Aligned_cols=175  Identities=22%  Similarity=0.312  Sum_probs=123.2

Q ss_pred             CC-CCcCCChHH---HHHHHHHHhHhhhccCC--------------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcC
Q 030040            2 FD-AAELEIEGD---FLYFLADAAVTAFQYGN--------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSF   63 (184)
Q Consensus         2 Fg-~~~l~~~~d---f~~~i~~~~~~~~Qy~~--------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~   63 (184)
                      |+ +.++.++.|   ++.++.++++.++|+++              ++.+|+.|.+..    +.+.++..+...+++.. 
T Consensus       217 f~~c~~~~~~~d~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~----~~~~~~~~~~~~~~~~~-  291 (472)
T 4ebb_A          217 FGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEA----QRITGLRALAGLVYNAS-  291 (472)
T ss_dssp             HTBSSCCCSHHHHHHHHHHHHHHHHHHHHTCCSSCEESSSEECSSHHHHHHHHHHTCS----SHHHHHHHHHHHHHCTT-
T ss_pred             hcCCCCCCChHHHHHHHHHHHHHHHHHhhhccccchhhcccCccchHHHHHHHhcccc----hHHHHHHHHHHHHhhcc-
Confidence            45 467776666   44556667766665543              245677776532    34666666666665543 


Q ss_pred             CCcccccccccccc--CCCC---CCCCCcceeccccccccccccCCCCC-CCCcccCChhhHHHHhHHhcCCCCCCChHH
Q 030040           64 GASVQTYNQKRLKN--TAVT---DQSADRLWWFQVCTEVAFFQVAPAND-SVRSSKVDTRYHLDLCKNVFGEGIYPDVDS  137 (184)
Q Consensus        64 ~~~~~~~~~~~~~~--~~~~---~~~~~r~W~~QtCtE~g~fqt~~~~~-~~~~~~~~~~~~~~~C~~~Fg~~~~~~v~~  137 (184)
                       ....|++......  .+..   ...++|+|.||+||||||||++++.. ++.+.+++++++.++|+++||....|++. 
T Consensus       292 -~~~~c~~~~~~~~~~~~~~~~~~~~~~r~W~yQ~CtE~g~~~~~~~~~~~f~~~~~~~~~~~~~C~~~fg~~~~~~~~-  369 (472)
T 4ebb_A          292 -GSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWL-  369 (472)
T ss_dssp             -SCCSSBCHHHHCCCCSSTTCCCSSHHHHHHHHHHTTTCCCCCCBCSSSSSSCCBCCCHHHHHHHHHHHHSCCCCTTHH-
T ss_pred             -CCcchhhhhhhhhhccCCcccCCCCCcccccccccccccccccCCCCCCcCCCCCCcHHHHHHHHHHHhCCCCChhHH-
Confidence             2345665421111  1111   12235999999999999999987754 55677899999999999999954344433 


Q ss_pred             HHHhcCCCCCCCCeEEEECCCCCCcccCccCCC-CCCCceEEEecCC
Q 030040          138 TNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFRT  183 (184)
Q Consensus       138 ~n~~yGG~~~~~sniiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~~  183 (184)
                      +|.+|||.+++++||||+||++||||.+|++++ ++++++++||++.
T Consensus       370 ~~~~~Gg~~~~~sniiF~nG~~DPW~~~gv~~~~s~~~~~~~I~g~~  416 (472)
T 4ebb_A          370 LTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGA  416 (472)
T ss_dssp             HHHHCTTCCTTCCSEEEEEETTCTTGGGSCCSCCSSSEEEEEETTCC
T ss_pred             HHHhcCCcCCCCCeEEEECCCcCCCcCccCCCCCCCCceEEEeCcCe
Confidence            456788889999999999999999999999876 8899999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00