Citrus Sinensis ID: 030041

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGMGTYK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MASKLLIATVFVFDLIAFGLAVAAEqrrstatiqtdseknynyciydsdistgmGVGAFLFLLASQVLIMLASRcfccgkplspggsrAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYrtiwgenppscqtvRKGVFAAGAAFVFFTAIVSEFYYICYSKAresfqpyggetgvgmgtyk
Flexible Loop (DISEMBL)
MASKLLIATVFVFDLIAFGLAVaaeqrrstatiqtdseknynYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKAResfqpyggetgvgmgtyk
Low Complexity Region (SEG)
MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKgvfaagaafvffTAIVSEFYYICYSKARESFQPYGGETGVGMGTYK
Disordered region (IsUnstruct)
****LLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESF***************
Disordered Region (DISOPRED)
**SKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYIC***********************
Disordered Region (DISEMBL)
MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGMGTYK
Disordered Region (DISPRO)
*ASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARE*****************
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGMGTYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
449446953	184	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.826	1e-85
255582471	184	conserved hypothetical protein [Ricinus	1.0	1.0	0.804	2e-84
351721561	185	uncharacterized protein LOC100305647 pre	1.0	0.994	0.875	6e-82
224117230	183	predicted protein [Populus trichocarpa]	0.994	1.0	0.793	1e-81
224128386	183	predicted protein [Populus trichocarpa]	0.994	1.0	0.793	1e-81
38016521	185	fiber protein Fb34 [Gossypium barbadense	1.0	0.994	0.8	2e-81
118481332	183	unknown [Populus trichocarpa]	0.994	1.0	0.793	4e-81
351728041	185	uncharacterized protein LOC100499677 pre	1.0	0.994	0.864	7e-81
225461377	185	PREDICTED: uncharacterized protein LOC10	1.0	0.994	0.772	5e-80
449431826	184	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.777	9e-76

>gi|449446953|ref|XP_004141234.1| PREDICTED: uncharacterized protein LOC101208795 [Cucumis sativus] gi|449498665|ref|XP_004160599.1| PREDICTED: uncharacterized protein LOC101224700 [Cucumis sativus]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 164/184 (89%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKL++  VFV D+IAFGLAVAAEQRRSTA +  D EK YNYC+YDSDISTG GVGAFL
Sbjct: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
            L+ASQ LIM ASRCFCCGK LSPGGSRAWAVILFIICWVFFFIAEVCL AGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180
           KYRT++G+NPPSCQT+RKGVF AGAAF+F  AIVSE YY+ YSKARESF PYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 184
           GTYK
Sbjct: 181 GTYK 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582471|ref|XP_002532022.1| conserved hypothetical protein [Ricinus communis] gi|223528317|gb|EEF30361.1| conserved hypothetical protein [Ricinus communis]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 166/184 (90%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKLL+ TVF+FDLIAFGLAVAAEQRRSTA I+ D+E NYNYC+YDSDI+TG GVGAFL
Sbjct: 1   MASKLLLITVFIFDLIAFGLAVAAEQRRSTAVIKQDAEVNYNYCVYDSDIATGYGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FL+ SQV+IM+AS+CFCCGK L+PGGSRAWAVILFI CWVFFFIAEVCLLAGSVRNAYHT
Sbjct: 61  FLMLSQVIIMVASQCFCCGKALNPGGSRAWAVILFITCWVFFFIAEVCLLAGSVRNAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180
           KYRT++ +NPP CQ +RKGVF AGAAF  FT IVS+FYY+CYSKAR+ FQPYG ETGV M
Sbjct: 121 KYRTVFSDNPPDCQMLRKGVFGAGAAFSLFTLIVSQFYYVCYSKARDGFQPYGRETGVPM 180

Query: 181 GTYK 184
           GTYK
Sbjct: 181 GTYK 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721561|ref|NP_001238493.1| uncharacterized protein LOC100305647 precursor [Glycine max] gi|255626185|gb|ACU13437.1| unknown [Glycine max]

 Score =  308 bits (789), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 162/185 (87%), Positives = 176/185 (95%), Gaps = 1/185 (0%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKLL+ TVFVFDLIAFGLAVAAEQRRSTA++ TD+EKNYNYC+Y+SDI+TG GVGAFL
Sbjct: 1   MASKLLLITVFVFDLIAFGLAVAAEQRRSTASVVTDNEKNYNYCVYNSDIATGYGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FLL SQVLIM+ASRCFCCGKPL+PGGSRA AV+LFIICWVFF IAEVCLLAGSV NAYHT
Sbjct: 61  FLLVSQVLIMVASRCFCCGKPLNPGGSRACAVVLFIICWVFFIIAEVCLLAGSVENAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPY-GGETGVG 179
           KYRTI+GENPPSC+TVRKGVFAAGAAFVFFTAI+SEFYYI YS+ARESFQPY GGETGVG
Sbjct: 121 KYRTIFGENPPSCETVRKGVFAAGAAFVFFTAIISEFYYINYSRARESFQPYAGGETGVG 180

Query: 180 MGTYK 184
           MGTYK
Sbjct: 181 MGTYK 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117230|ref|XP_002317514.1| predicted protein [Populus trichocarpa] gi|222860579|gb|EEE98126.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/184 (79%), Positives = 165/184 (89%), Gaps = 1/184 (0%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKLL+  V VFD+IAFGLAVAAEQRRSTAT+Q D+EK+Y+YCIYDSDI+TG+GVGAFL
Sbjct: 1   MASKLLLIIVSVFDIIAFGLAVAAEQRRSTATVQPDTEKDYSYCIYDSDIATGLGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FL+ASQVLIM AS+CFCCGKPLSPGGSRAWAVIL+I CWVFFFIAE+CLLAGSVRNAYHT
Sbjct: 61  FLMASQVLIMFASKCFCCGKPLSPGGSRAWAVILYITCWVFFFIAEICLLAGSVRNAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180
           +Y+  +GE    C ++RKGVF AGAAF  FTAIVSE YYICYSKA +SFQPYGG+ GVGM
Sbjct: 121 RYKNFFGET-LDCPSLRKGVFGAGAAFTLFTAIVSELYYICYSKASDSFQPYGGDVGVGM 179

Query: 181 GTYK 184
           GTYK
Sbjct: 180 GTYK 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128386|ref|XP_002329149.1| predicted protein [Populus trichocarpa] gi|118485194|gb|ABK94458.1| unknown [Populus trichocarpa] gi|222869818|gb|EEF06949.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/184 (79%), Positives = 166/184 (90%), Gaps = 1/184 (0%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKLL+ TVF+FDLIAFGLAVAAEQRRSTAT++ DSEK+Y+YCIYDSDI++G GVGAFL
Sbjct: 1   MASKLLLITVFIFDLIAFGLAVAAEQRRSTATVRPDSEKDYSYCIYDSDIASGYGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FLLASQVLIM AS+CFCCGKPLSPGGSRA AVILFI+CWVFFFIAE+CL AGS+RNAYHT
Sbjct: 61  FLLASQVLIMFASKCFCCGKPLSPGGSRACAVILFIVCWVFFFIAEICLFAGSIRNAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180
           KY+  +GEN   C ++RKGVFAAGAAF  FTAIVSEFYY+CYS+A +SF PY G+ GVGM
Sbjct: 121 KYKNFFGEN-LDCPSLRKGVFAAGAAFTLFTAIVSEFYYVCYSRASDSFHPYSGDVGVGM 179

Query: 181 GTYK 184
           GTYK
Sbjct: 180 GTYK 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38016521|gb|AAR07596.1| fiber protein Fb34 [Gossypium barbadense]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 162/185 (87%), Gaps = 1/185 (0%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKLL+  VFV DLIAFGLAVAAEQRRSTA I  DSE NYNYC+YDS ISTG GVGAFL
Sbjct: 1   MASKLLLIAVFVLDLIAFGLAVAAEQRRSTAKIVQDSEVNYNYCVYDSYISTGYGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FL+ SQ LIM AS+CFCCGK L+P GSRAWAVILFI+CW+FF IAE+CLLAGSVRNAYHT
Sbjct: 61  FLMVSQALIMAASKCFCCGKGLNPSGSRAWAVILFIVCWLFFLIAEICLLAGSVRNAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARE-SFQPYGGETGVG 179
           KYRTI+ E PPSC+TVRKGVF AGAAF+F  AIV++FYYICYS AR+ SFQ YGGETGVG
Sbjct: 121 KYRTIFSEQPPSCETVRKGVFGAGAAFIFLNAIVNKFYYICYSSARDKSFQAYGGETGVG 180

Query: 180 MGTYK 184
           MGTYK
Sbjct: 181 MGTYK 185

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481332|gb|ABK92609.1| unknown [Populus trichocarpa]

 Score =  305 bits (782), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 146/184 (79%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKLL+  V VFD+IAFGLAVAAEQRRSTAT+Q D+EK+Y+YCIYDSDI+TG GVGAFL
Sbjct: 1   MASKLLLIIVSVFDIIAFGLAVAAEQRRSTATVQPDTEKDYSYCIYDSDIATGFGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FL+ASQVLIM AS+CFCCGKPLSPGGSRAWAVIL+I CWVFFFIAE+CLLAGSVRNAYHT
Sbjct: 61  FLMASQVLIMFASKCFCCGKPLSPGGSRAWAVILYITCWVFFFIAEICLLAGSVRNAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180
           +Y+  +GE    C ++RKGVF AGAAF  FTAIVSE YYICYSKA +SFQPYGG+ GVGM
Sbjct: 121 RYKNFFGET-LDCPSLRKGVFGAGAAFTLFTAIVSELYYICYSKASDSFQPYGGDVGVGM 179

Query: 181 GTYK 184
           GTYK
Sbjct: 180 GTYK 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728041|ref|NP_001238205.1| uncharacterized protein LOC100499677 precursor [Glycine max] gi|255625711|gb|ACU13200.1| unknown [Glycine max]

 Score =  305 bits (780), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 160/185 (86%), Positives = 174/185 (94%), Gaps = 1/185 (0%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKLL+ TVFVFDLIAFGLAVAAEQRRSTA+I  D+EKNYNYC+Y+SDI+TG GVGAFL
Sbjct: 1   MASKLLLITVFVFDLIAFGLAVAAEQRRSTASIVPDNEKNYNYCVYNSDIATGYGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FLL SQVLIM+ASRCFCCGKPL+PGGSRA AV+LFIICWVFF I+EVCLL GSV NAYHT
Sbjct: 61  FLLVSQVLIMVASRCFCCGKPLNPGGSRACAVVLFIICWVFFIISEVCLLTGSVENAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPY-GGETGVG 179
           KYRTI+GENPPSC+TVRKGVFAAGAAF+FFTAIVSEFYYI YS+ARESFQPY GGETGVG
Sbjct: 121 KYRTIFGENPPSCETVRKGVFAAGAAFIFFTAIVSEFYYINYSRARESFQPYAGGETGVG 180

Query: 180 MGTYK 184
           MGTYK
Sbjct: 181 MGTYK 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461377|ref|XP_002284734.1| PREDICTED: uncharacterized protein LOC100260721 isoform 2 [Vitis vinifera] gi|302143046|emb|CBI20341.3| unnamed protein product [Vitis vinifera]

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/185 (77%), Positives = 161/185 (87%), Gaps = 1/185 (0%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MAS +++  V +FD+IAFGLAVAAEQRRSTA + TDSE NY YC+YDSDISTG+GVGA L
Sbjct: 1   MASTVILVVVLIFDVIAFGLAVAAEQRRSTAQVVTDSEDNYKYCVYDSDISTGLGVGALL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FL ASQ +IM+ASRCFCCGK L+PGGSRAWAVILFI CWV F IAE+CLLAGSVRNAYHT
Sbjct: 61  FLFASQAIIMVASRCFCCGKALNPGGSRAWAVILFITCWVTFLIAEICLLAGSVRNAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGG-ETGVG 179
           KYRTI+ E+PPSC+T+RKGVF AGAAF FFTAI+SE YY+CYSKAR SF  YGG ETGVG
Sbjct: 121 KYRTIFSEDPPSCETLRKGVFGAGAAFTFFTAILSELYYVCYSKARGSFPAYGGRETGVG 180

Query: 180 MGTYK 184
           MGTY 
Sbjct: 181 MGTYS 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431826|ref|XP_004133701.1| PREDICTED: uncharacterized protein LOC101203051 [Cucumis sativus] gi|449478168|ref|XP_004155240.1| PREDICTED: uncharacterized protein LOC101232086 [Cucumis sativus]

 Score =  288 bits (736), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 143/184 (77%), Positives = 162/184 (88%)

Query: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
           MASKLL+ TVFVFD+IAFGLA+AAEQRRS A I  D     NYC+YDSDISTG+GVGAFL
Sbjct: 1   MASKLLLFTVFVFDVIAFGLAIAAEQRRSIAKIVEDPGAKTNYCVYDSDISTGLGVGAFL 60

Query: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
           FLLASQ+LIM+ASRCFCCGKPLSPGGSRAWAV+L I CWVFF IAE+CLLAGS RNAYHT
Sbjct: 61  FLLASQILIMVASRCFCCGKPLSPGGSRAWAVVLLITCWVFFLIAEICLLAGSARNAYHT 120

Query: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180
           KYRT+  E PPSCQ +R+GVFAAGAAF+FFT+IVS+FYY+CYS+ARESFQ Y  +TG+GM
Sbjct: 121 KYRTLLTETPPSCQMLRRGVFAAGAAFIFFTSIVSQFYYVCYSRARESFQSYSKDTGIGM 180

Query: 181 GTYK 184
            TYK
Sbjct: 181 STYK 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:505006522	173	AT4G27435 "AT4G27435" [Arabido	0.934	0.994	0.670	3.5e-59
TAIR|locus:2090156	175	AT3G15480 "AT3G15480" [Arabido	0.923	0.971	0.619	3.2e-58
TAIR|locus:2011556	175	AT1G52910 "AT1G52910" [Arabido	0.923	0.971	0.619	8.6e-56
TAIR|locus:505006194	180	AT1G61065 "AT1G61065" [Arabido	0.972	0.994	0.598	1.6e-54
TAIR|locus:2009922	188	AT1G13380 "AT1G13380" [Arabido	0.972	0.952	0.4	5.7e-36
TAIR|locus:2199332	201	AT1G68220 "AT1G68220" [Arabido	0.896	0.820	0.383	4.2e-24
TAIR|locus:2167200	209	AT5G17210 "AT5G17210" [Arabido	0.934	0.822	0.267	3.4e-13

TAIR|locus:505006522 AT4G27435 "AT4G27435" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 116/173 (67%), Positives = 134/173 (77%)

Query:     1 MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
             MASK++ A VFVF+LIAFGLAVAAEQRRSTA +  D+E  YNYC+YDSD +TG GVGAFL
Sbjct:     1 MASKIVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFL 60

Query:    61 FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
             F +ASQ+LIML SRCFCCGKPL PGGSRA A+ILFI+ W+FF IAE+CLLAGSV NAYHT
Sbjct:    61 FSVASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHT 120

Query:   121 KYRTIWGENPPSCQTVRKXXXXXXXXXXXXTAIVSEFYYICYSKARE-SFQPY 172
             KYRT++ +NPP CQT+RK             AIVS+FYY  Y  A E S  PY
Sbjct:   121 KYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAEASLSPY 173

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2090156 AT3G15480 "AT3G15480" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 106/171 (61%), Positives = 134/171 (78%)

Query:     1 MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
             MASKL++  VF+ DLIA GLA+AAEQRRS   ++TD +K Y+YC+Y +DI+T  G GAF+
Sbjct:     1 MASKLVVIIVFILDLIAVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFV 60

Query:    61 FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
              L  SQVLIM ASRCFCCGK L+PGGSRA A+ILF+ICWVFF IAE+CLLA S+RNAYHT
Sbjct:    61 LLFVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHT 120

Query:   121 KYRTIWG-ENPPSCQTVRKXXXXXXXXXXXXTAIVSEFYYICYSKARESFQ 170
             +YR +W  E+PPSC+ +RK            TAIVS+FYY+CYS+AR+++Q
Sbjct:   121 QYRKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSRARDAYQ 171

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2011556 AT1G52910 "AT1G52910" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 106/171 (61%), Positives = 127/171 (74%)

Query:     1 MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
             MASKL+I  VF+ DLIA GLA+AAEQRRS   +  D EK + +C Y SDI+T  G GAF+
Sbjct:     1 MASKLVIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFV 60

Query:    61 FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
              L  SQV+IM+ASRCFCCGK L PGGSRA  ++LF+ICWVFF IAEVCLLAGS+RNAYHT
Sbjct:    61 LLFISQVIIMVASRCFCCGKALKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHT 120

Query:   121 KYRTIWG-ENPPSCQTVRKXXXXXXXXXXXXTAIVSEFYYICYSKARESFQ 170
              YR +W  ENPPSC+ +RK            TAIVS+FYYI YS+AR+ +Q
Sbjct:   121 TYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARDGYQ 171

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006194 AT1G61065 "AT1G61065" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 109/182 (59%), Positives = 137/182 (75%)

Query:     1 MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60
             MAS LL+  VFVFDLIAFGLAVAAEQRR+T  I  +S ++ +YC+YD DI+TG+GVG+FL
Sbjct:     1 MASVLLLLLVFVFDLIAFGLAVAAEQRRTTWQISRES-RDLSYCVYDKDIATGLGVGSFL 59

Query:    61 FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120
              LLASQ+LIM+ASRC CCG+ L+P GSR+WA+ LFI  WVFFFIA+VCLLAGSVRNAYHT
Sbjct:    60 VLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHT 119

Query:   121 KYRTIWGENPPSCQTVRKXXXXXXXXXXXXTAIVSEFYYICYSKARESFQPYGGETGVGM 180
             KYR  +G   PSC+++RK            T IVSE YY+  S+A++ FQP   + G+ M
Sbjct:   120 KYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRAKD-FQP-SRDPGIRM 177

Query:   181 GT 182
              +
Sbjct:   178 SS 179

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009922 AT1G13380 "AT1G13380" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 74/185 (40%), Positives = 112/185 (60%)

Query:     2 ASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLF 61
             AS L+   V    L+AFG ++AAE+RRS      D   N  +C+YDSD++TG GVGAFLF
Sbjct:     6 ASTLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLF 65

Query:    62 LLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTK 121
             LL+S+ L+M  ++C C G+PL+PG  RAW++I FI  W+ F +AE C++AG+ +NAYHTK
Sbjct:    66 LLSSESLLMSVTKCMCFGRPLAPGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTK 125

Query:   122 YRTIWGENPPSCQTVRKXXXXXXXXXXXXTAIVSEFYYICYSKARES---FQPYGGETGV 178
             Y +       SC ++RK            T +++ +YY+ ++K+  S    +     + +
Sbjct:   126 YLS---SQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKSVSSPPAHKANRSSSNI 182

Query:   179 GMGTY 183
             GM  Y
Sbjct:   183 GMAGY 187

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199332 AT1G68220 "AT1G68220" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 64/167 (38%), Positives = 84/167 (50%)

Query:     1 MASKLLIATVFV-FDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAF 59
             MA  + I TV     L+AF  A  AE+RRSTA    D       C Y ++ ST  G+ AF
Sbjct:     1 MAVSVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAF 60

Query:    60 LFLLASQVLIMLASRCFCCGKPLSPGGS-RAWAVILFIICWVFFFIAEVCLLAGSVRNAY 118
               LL SQ ++   ++C C GK L  G S   WA++ F++ WV F  AE CLL GS RNAY
Sbjct:    61 GLLLVSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAY 120

Query:   119 HTKYRTIWGENPPSCQTVRKXXXXXXXXXXXXTAIVSEFYYICYSKA 165
             HTK   I+     SC  +              + I +  YY+ +SKA
Sbjct:   121 HTKSEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLAHSKA 167

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2167200 AT5G17210 "AT5G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 49/183 (26%), Positives = 85/183 (46%)

Query:     5 LLIATVFVFDLIAFGLAVAAEQ---RRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLF 61
             ++   +F+  L++   A  AE    +RS  T+ T S+ +   C Y    +  +G  + LF
Sbjct:     7 VMCGVLFLLGLLSAVTAFVAEATRIKRSQVTV-TVSD-SITKCTYPRSPAFNLGFTSALF 64

Query:    62 LLASQVLIMLASRCFCCGKPLSPGGSRAWAV--ILFIICWVFFFIAEVCLLAGSVRNAYH 119
             L+ +Q+++ ++S CFCC K  +P  S  W +  I F++ W  F IA + LL+G+  N  H
Sbjct:    65 LMMAQIIVSVSSGCFCCRKGPAPSRSN-WIISLICFVVSWFTFVIAFLVLLSGAALNDEH 123

Query:   120 TKYRTIWGENPPSCQTVRKXXXXXXXXXXXXTAIVSEFYYICYSKARESFQPYGGE-TGV 178
             T+     G     C  V+             T  +   YY+C +  ++       + TG+
Sbjct:   124 TEESMNAGTY--FCYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQIVAATTTQGTGI 181

Query:   179 GMG 181
              MG
Sbjct:   182 AMG 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       172   0.00093  108 3  11 22  0.45    31
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  161 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.82u 0.14s 14.96t   Elapsed:  00:00:01
  Total cpu time:  14.82u 0.14s 14.96t   Elapsed:  00:00:01
  Start:  Fri May 10 06:12:18 2013   End:  Fri May 10 06:12:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XI0311 SubName- Full=Putative uncharacterized protein; (184 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam06749	97	pfam06749, DUF1218, Protein of unknown function (D	2e-33

>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218)

 Score =  113 bits (286), Expect = 2e-33
 Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 57  GAFLFLLASQVLIMLASRCFCCGKPLSP--GGSRAWAVILFIICWVFFFIAEVCLLAGSV 114
            A +FL  +QV+  +   C CCGK L P  G  RA AV+ F++ W+ F IA   LLAG+ 
Sbjct: 1   AAAVFLAVAQVVGNVVGGCCCCGKALPPKSGRKRALAVVCFVLSWIAFVIAFALLLAGAA 60

Query: 115 RNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIV 154
           RNAYHT+Y   +    PSC T++KGVFAAGA      A++
Sbjct: 61  RNAYHTRYNVHF---RPSCYTLKKGVFAAGAVLSLLAALL 97

This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF06749	97	DUF1218: Protein of unknown function (DUF1218); In	99.96
cd07912	418	Tweety_N N-terminal domain of the protein encoded	89.36
PF07344	155	Amastin: Amastin surface glycoprotein; InterPro: I	86.92
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	80.24

>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function

Probab=99.96  E-value=4.2e-30  Score=190.47  Aligned_cols=95  Identities=49%  Similarity=0.874  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHhccccccCCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCccc
Q 030041           57 GAFLFLLASQVLIMLASRCFCCGKPLSP--GGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQ  134 (184)
Q Consensus        57 ~A~~~Ll~aqi~~~~~~~C~cc~~~~~~--s~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~~~~~~~~~~~~~C~  134 (184)
                      +|+++|+++|+++|+++||.||+|+.+|  +++|+++++||++||++|++||++|++|+++|++|+|++.+.   +++|+
T Consensus         1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~   77 (97)
T PF06749_consen    1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY   77 (97)
T ss_pred             CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence            4899999999999999999988888666  479999999999999999999999999999999999998773   88999


Q ss_pred             ccccceehhhHHHHHHHHHH
Q 030041          135 TVRKGVFAAGAAFVFFTAIV  154 (184)
Q Consensus       135 ~~k~GvFa~aa~l~l~t~~~  154 (184)
                      ++|+|+|++||+|+|+|+++
T Consensus        78 ~~k~GvF~~~a~l~l~t~~f   97 (97)
T PF06749_consen   78 TVKKGVFAGGAVLSLVTALF   97 (97)
T ss_pred             ccCCceeeHhHHHHHHHHhC
Confidence            99999999999999999864

Family members contain a number of conserved cysteine residues.

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=89.36  E-value=1.7  Score=40.08  Aligned_cols=28  Identities=14%  Similarity=0.250  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCC
Q 030041           55 GVGAFLFLLASQVLIMLASRCFCCGKPL   82 (184)
Q Consensus        55 Gv~A~~~Ll~aqi~~~~~~~C~cc~~~~   82 (184)
                      |..|++.+++.-+...+...|.||||+.
T Consensus        43 a~iaavwlil~ll~ll~~~~~~CCcr~~   70 (418)
T cd07912          43 ASIPAACLILSLLFLLVYLITRCCDRKP   70 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            4555555655556666555566665553

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long)

Probab=86.92  E-value=5.6  Score=31.40  Aligned_cols=89  Identities=19%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhcccceeeecCCCCcceeecCCCchhhhHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 030041            4 KLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLS   83 (184)
Q Consensus         4 ~~v~~vv~~lgliAfiLg~~AE~~r~~~~~~~~~~~~~~~C~Yp~~~A~~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~   83 (184)
                      -...++..+++..++++|+..=...+.                .+-+...|.+.+++++++.=++....=.=..|. +.+
T Consensus        66 ~afaIisi~~~~~a~v~g~~~l~~~~~----------------~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~  128 (155)
T PF07344_consen   66 QAFAIISIFVYGAAFVLGVLLLCCCSC----------------LRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALK  128 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-Ccc
Confidence            346778889999999999886655322                123456788888888877766554433333343 333


Q ss_pred             CCC-ChHHHHHHHHHHHHHHHHHHHHH
Q 030041           84 PGG-SRAWAVILFIICWVFFFIAEVCL  109 (184)
Q Consensus        84 ~s~-~r~~a~~~~v~SWi~f~iA~~~l  109 (184)
                      +.. +-..+-.+++.+|...+++.+.|
T Consensus       129 ~~~~~yg~GF~L~v~aw~l~~i~ii~L  155 (155)
T PF07344_consen  129 SRGYKYGAGFALFVAAWCLDIINIIFL  155 (155)
T ss_pred             CCCcccCccHHHHHHHHHHHHHHHHhC
Confidence            332 44458899999999999987754

In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=80.24  E-value=3  Score=38.17  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 030041           54 MGVGAFLFLLASQVLIMLASRCFCCGKPLSP   84 (184)
Q Consensus        54 lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~   84 (184)
                      +|..+++.|.+.-+...+-.-|.||+|+.++
T Consensus        22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~   52 (406)
T PF04906_consen   22 LASVAAACLALSLLFLLIYLICRCCCRRPRE   52 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence            4556666777777766666667777666433

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00