Citrus Sinensis ID: 030078

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDHVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccEEccc
Coil and Loop (DISEMBL)
MAEEQVKKVeaetpaapapapalapapapavpnndvaEEKAVTQlhdqekpvddskalAVVDHVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRatgttpkkllgcf
Flexible Loop (DISEMBL)
MAEEQVKKVeaetpaapapapALAPAPAPAVPNNDVAEEKAVTQLhdqekpvddskALAVVDHVALAEVEKEKRESFIKAWeesektkaenkAQKKLSavaawenskkasLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAmvearrgedvlkAEEIAakyratgttpkkllgcf
Low Complexity Region (SEG)
MAEEQVKKVEAETpaapapapalapapapavpNNDVAEEKAVTQLHDQEKPVDDSKALAVVDHVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENskkasleaklkkieEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Disordered region (IsUnstruct)
*********************************************************LAVVDHVALA********************************************************************************************************************
Disordered Region (DISOPRED)
*******************************************************************************************KAQKKLSAVAAWE*****************************************************************RATGTTPKKLLGCF
Disordered Region (DISEMBL)
***************************APAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDHVALAEVEKEKRESFIKAWEE***************************LEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Disordered Region (DISPRO)
*************************************************************DHVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDHVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.956	0.883	0.616	5e-54
Q9M2D8	212	Uncharacterized protein A	yes	no	0.803	0.693	0.640	6e-48
O80837	190	Remorin OS=Arabidopsis th	no	no	0.934	0.9	0.579	2e-43

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score =  210 bits (534), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/206 (61%), Positives = 147/206 (71%), Gaps = 31/206 (15%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQ------LHDQEKPVDD 54
           MAE + KKVE   PA PAP P  AP          VA+EKA+          ++EKP DD
Sbjct: 1   MAELEAKKVEIVDPAPPAPGPVEAP-------KEVVADEKAIVAPALPPPAEEKEKP-DD 52

Query: 55  SKALAVVDHVA-----------------LAEVEKEKRESFIKAWEESEKTKAENKAQKKL 97
           SKAL VV+  A                 LA V  EKR S IKAWEESEK+KAENKAQKK+
Sbjct: 53  SKALVVVETKAPEPADEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKV 112

Query: 98  SAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 157
           SA+ AWENSKKA+LEA+LKK+EEQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGE
Sbjct: 113 SAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGE 172

Query: 158 DVLKAEEIAAKYRATGTTPKKLLGCF 183
           D+LKAEE+AAKYRATGT PKK+LG F
Sbjct: 173 DLLKAEELAAKYRATGTAPKKILGIF 198

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score =  189 bits (481), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 126/167 (75%), Gaps = 20/167 (11%)

Query: 35  DVAEEKAVTQLHDQEKPVDDSKALAVVD------------------HVALAEVEKEKRES 76
           DVAEEK   Q    E+  DDSKAL VV+                   V LA++ KEKR S
Sbjct: 48  DVAEEK--IQNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASLDRDVKLADLSKEKRLS 105

Query: 77  FIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNK 136
           F++AWEESEK+KAENKA+KK++ V AWENSKKA++EA+LKKIEEQLE+KKAEYAE+MKNK
Sbjct: 106 FVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNK 165

Query: 137 VALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 183
           VA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct: 166 VAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

Arabidopsis thaliana (taxid: 3702)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 144/202 (71%), Gaps = 31/202 (15%)

Query: 1   MAEEQ-VKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALA 59
           MAEEQ   KV+ E+PA  APA    PAP       +VA+EK    +H+   P  +SKALA
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPAPV------EVADEK----IHNP--PPVESKALA 48

Query: 60  VVD------------------HVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVA 101
           VV+                   V LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V 
Sbjct: 49  VVEKPIEEHTPKKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVH 108

Query: 102 AWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLK 161
           AWENSKKA++EA+L+KIEE+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LK
Sbjct: 109 AWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLK 168

Query: 162 AEEIAAKYRATGTTPKKLLGCF 183
           AEE+ AKYRATG  PK   GCF
Sbjct: 169 AEEMGAKYRATGVVPKATCGCF 190

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
255541538	188	Remorin, putative [Ricinus communis] gi|	0.934	0.909	0.7	1e-60
224130228	193	predicted protein [Populus trichocarpa]	0.945	0.896	0.625	3e-56
224067874	196	predicted protein [Populus trichocarpa]	0.945	0.882	0.621	3e-53
351721994	183	uncharacterized protein LOC100305679 [Gl	0.928	0.928	0.610	9e-53
34925093	198	RecName: Full=Remorin; AltName: Full=pp3	0.956	0.883	0.616	2e-52
356532022	183	PREDICTED: remorin-like [Glycine max]	0.901	0.901	0.653	2e-51
115459618	206	Os04g0533300 [Oryza sativa Japonica Grou	0.814	0.723	0.670	6e-51
242076586	212	hypothetical protein SORBIDRAFT_06g02363	1.0	0.863	0.609	6e-51
326492750	211	predicted protein [Hordeum vulgare subsp	0.814	0.706	0.634	1e-49
432278309	199	remorin [Morus indica]	0.983	0.904	0.589	2e-49

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/200 (70%), Positives = 158/200 (79%), Gaps = 29/200 (14%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAV 60
           MAE++ KK+EAE+P APAPA A           +DVA +KA T    +EKP DDSKALAV
Sbjct: 1   MAEQEAKKLEAESPVAPAPAEA----------KSDVAHDKA-TVPTPEEKP-DDSKALAV 48

Query: 61  VDHV-----------------ALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAW 103
           V+ V                 ALAEVEKEKR SFIKAWE+SEK+KAENKAQKKLS+V AW
Sbjct: 49  VEKVPESGPKKTSGGSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAENKAQKKLSSVTAW 108

Query: 104 ENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAE 163
           ENSKKA+LEAKL+KIEEQLE+KKAEYAEKMKNKVALVHK+AEEKRAMVEA+RGE+VLKAE
Sbjct: 109 ENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVHKQAEEKRAMVEAQRGEEVLKAE 168

Query: 164 EIAAKYRATGTTPKKLLGCF 183
           E+AAKYRATG TPKKLLGCF
Sbjct: 169 EMAAKYRATGQTPKKLLGCF 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130228|ref|XP_002320784.1| predicted protein [Populus trichocarpa] gi|222861557|gb|EEE99099.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/203 (62%), Positives = 153/203 (75%), Gaps = 30/203 (14%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVT----QLHDQEKPVDDSK 56
           MAE++VKKVE ETP  PAP              +DVA+EKA+        ++EK  D+ K
Sbjct: 1   MAEQEVKKVETETPVTPAPVET----------KSDVADEKAIVPPPPAAEEKEKVADELK 50

Query: 57  ALAVVD----------------HVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAV 100
           ALAVV+                 +ALA++EKEKR SFIKAWE+SEKTKAENK+QKKLSAV
Sbjct: 51  ALAVVEKTEPAPKKISGGSIDRDIALADLEKEKRLSFIKAWEDSEKTKAENKSQKKLSAV 110

Query: 101 AAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVL 160
            AWENSKKA+LEA L+K+EE+LE++KAEYAEKMKNKVAL+HK+AEE+RAMVEA+RGE+ L
Sbjct: 111 VAWENSKKAALEATLRKMEEKLEKQKAEYAEKMKNKVALIHKDAEEQRAMVEAKRGEEFL 170

Query: 161 KAEEIAAKYRATGTTPKKLLGCF 183
           KAEE+AAKYRATG TPKKLLGCF
Sbjct: 171 KAEEMAAKYRATGQTPKKLLGCF 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067874|ref|XP_002302576.1| predicted protein [Populus trichocarpa] gi|118481279|gb|ABK92585.1| unknown [Populus trichocarpa] gi|222844302|gb|EEE81849.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 151/206 (73%), Gaps = 33/206 (16%)

Query: 1   MAEEQVKKVEAETPAAPAP-------APALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVD 53
           MAE++VKKVEA TP APAP       A     AP P V      ++KA T         +
Sbjct: 1   MAEQEVKKVEAVTPVAPAPVETKSDVADGKVTAPPPPVAAE---KQKAATA-------AE 50

Query: 54  DSKALAVVD----------------HVALAEVEKEKRESFIKAWEESEKTKAENKAQKKL 97
           +SKALAVV+                 VALA++EKEKR SFIKAWE+SEKTKAENK+QK  
Sbjct: 51  ESKALAVVEKTEPAPKKVSGGSIDRDVALADLEKEKRLSFIKAWEDSEKTKAENKSQKNF 110

Query: 98  SAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 157
           SAVAAWENSKKA+LEAKL+K+EE+LE++KAEYAEKMKNK+AL+HKEAEEK+A+VEA+RGE
Sbjct: 111 SAVAAWENSKKAALEAKLRKMEEKLEKQKAEYAEKMKNKIALIHKEAEEKKAIVEAKRGE 170

Query: 158 DVLKAEEIAAKYRATGTTPKKLLGCF 183
           +VLKA E AAKYRATG TPKKLLGCF
Sbjct: 171 EVLKAGETAAKYRATGQTPKKLLGCF 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721994|ref|NP_001235181.1| uncharacterized protein LOC100305679 [Glycine max] gi|255626287|gb|ACU13488.1| unknown [Glycine max]

 Score =  211 bits (537), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 144/185 (77%), Gaps = 15/185 (8%)

Query: 9   VEAETPAAPAPAPALAPAPAPAVPNND--------VAEEKAVTQLHDQEK-PVDDSKALA 59
           +++++  APAPAP +A      VP+ND          E KA+  + ++   P +   +  
Sbjct: 4   LQSKSETAPAPAPVVAE-----VPSNDAVAKKASETGESKAIVSVSEKTPVPANKQSSRG 58

Query: 60  VVDH-VALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKI 118
            +D  +ALAEVEKEK+ S++KAWEESEK KAEN+AQK LSA+AAWENSKKA+LEA+LKK+
Sbjct: 59  SIDRDIALAEVEKEKKLSYVKAWEESEKAKAENRAQKHLSAIAAWENSKKAALEAELKKL 118

Query: 119 EEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKK 178
           EEQLE+KKAEY EKMKNKVALVHKEAEEKRAM+EA+RGE++L+ EE+AAKYRATGTTPKK
Sbjct: 119 EEQLEKKKAEYGEKMKNKVALVHKEAEEKRAMIEAKRGEEILQTEEMAAKYRATGTTPKK 178

Query: 179 LLGCF 183
            +GCF
Sbjct: 179 TIGCF 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34925093|sp|P93788.1|REMO_SOLTU RecName: Full=Remorin; AltName: Full=pp34 gi|1881585|gb|AAB49425.1| remorin [Solanum tuberosum]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/206 (61%), Positives = 147/206 (71%), Gaps = 31/206 (15%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQ------LHDQEKPVDD 54
           MAE + KKVE   PA PAP P  AP          VA+EKA+          ++EKP DD
Sbjct: 1   MAELEAKKVEIVDPAPPAPGPVEAP-------KEVVADEKAIVAPALPPPAEEKEKP-DD 52

Query: 55  SKALAVVDHVA-----------------LAEVEKEKRESFIKAWEESEKTKAENKAQKKL 97
           SKAL VV+  A                 LA V  EKR S IKAWEESEK+KAENKAQKK+
Sbjct: 53  SKALVVVETKAPEPADEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKV 112

Query: 98  SAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 157
           SA+ AWENSKKA+LEA+LKK+EEQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGE
Sbjct: 113 SAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGE 172

Query: 158 DVLKAEEIAAKYRATGTTPKKLLGCF 183
           D+LKAEE+AAKYRATGT PKK+LG F
Sbjct: 173 DLLKAEELAAKYRATGTAPKKILGIF 198

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532022|ref|XP_003534573.1| PREDICTED: remorin-like [Glycine max]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 139/176 (78%), Gaps = 11/176 (6%)

Query: 19  PAPALAPAPAPA-VPNNDV-------AEEKAVTQLHDQEKPVDDSK--ALAVVDH-VALA 67
           P  ALAPAP  A VP+ND         EE   T +  ++ PV ++K  +   +D  +ALA
Sbjct: 8   PETALAPAPVAAEVPSNDAVAKKASETEESKATVVASEKTPVPENKQSSRGSIDRDIALA 67

Query: 68  EVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKA 127
           EVEKEK+ S++KAWEESEK KAEN+AQK+LSA+AAWENSKKA+LEA+LKKIEEQLE+KKA
Sbjct: 68  EVEKEKKLSYVKAWEESEKAKAENRAQKQLSAIAAWENSKKATLEAELKKIEEQLEKKKA 127

Query: 128 EYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 183
           E+ E+MKNKVALVHKEA EKRAM+EA R E+VLK EE+AAKYRATGTTPKK +GCF
Sbjct: 128 EHGERMKNKVALVHKEAGEKRAMIEANRCEEVLKTEEVAAKYRATGTTPKKTIGCF 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115459618|ref|NP_001053409.1| Os04g0533300 [Oryza sativa Japonica Group] gi|32489830|emb|CAE04574.1| OSJNBb0039L24.13 [Oryza sativa Japonica Group] gi|113564980|dbj|BAF15323.1| Os04g0533300 [Oryza sativa Japonica Group] gi|125549138|gb|EAY94960.1| hypothetical protein OsI_16768 [Oryza sativa Indica Group] gi|125591096|gb|EAZ31446.1| hypothetical protein OsJ_15583 [Oryza sativa Japonica Group] gi|215678908|dbj|BAG96338.1| unnamed protein product [Oryza sativa Japonica Group] gi|215694390|dbj|BAG89383.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741127|dbj|BAG97622.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 116/173 (67%), Positives = 131/173 (75%), Gaps = 24/173 (13%)

Query: 35  DVAEEKAVTQLHDQEKP-----VDDSKALAVVD-------------------HVALAEVE 70
           DVAEEKAV              VDDSKALA+V+                    VALA VE
Sbjct: 32  DVAEEKAVIPAPAPPAEEEKPPVDDSKALAIVEKVADEPPAEKPAQGGSNDRDVALARVE 91

Query: 71  KEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYA 130
            EKR S IKAWEE+EKTKAENKA KKLSA+ +WEN+KKA++EA+LKKIEEQLE+KKAEYA
Sbjct: 92  TEKRNSLIKAWEENEKTKAENKASKKLSAILSWENTKKANIEAQLKKIEEQLEKKKAEYA 151

Query: 131 EKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 183
           EKMKNKVA+VHKEAEEKRAMVEA+RGE+VLKAEE+AAKYRATG  PKKL+GCF
Sbjct: 152 EKMKNKVAIVHKEAEEKRAMVEAKRGEEVLKAEEMAAKYRATGHAPKKLIGCF 204

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076586|ref|XP_002448229.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor] gi|241939412|gb|EES12557.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor]

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 148/210 (70%), Gaps = 27/210 (12%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHD-----QEKPVDDS 55
           MAEE  KKVE E      P  A A A   A    DVAEEKAV    +     ++ P DDS
Sbjct: 1   MAEEAAKKVEVEVTKDKEPEAAPAEAVPEAAAKEDVAEEKAVIPATEPPAAEEKPPADDS 60

Query: 56  KALAVVDHVA----------------------LAEVEKEKRESFIKAWEESEKTKAENKA 93
           KALA+V+ VA                      LA VE EKR S IKAWEE+EKTKAENKA
Sbjct: 61  KALAIVEKVADEPAPEKPAAEKQGGSNDRDLALARVETEKRNSLIKAWEENEKTKAENKA 120

Query: 94  QKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEA 153
            KK+SA+ +WEN+KKA++EA+LKKIEEQLE+KKAEYAEKMKNKVA++HKEAEEKRAMVEA
Sbjct: 121 AKKVSAILSWENTKKANIEAQLKKIEEQLEKKKAEYAEKMKNKVAMIHKEAEEKRAMVEA 180

Query: 154 RRGEDVLKAEEIAAKYRATGTTPKKLLGCF 183
           +RGE+VLKAEE+AAKYRATG  PKKL+GCF
Sbjct: 181 KRGEEVLKAEEMAAKYRATGHAPKKLIGCF 210

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492750|dbj|BAJ90231.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326526095|dbj|BAJ93224.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 134/178 (75%), Gaps = 29/178 (16%)

Query: 35  DVAEEKAVTQLH----DQEKP-VDDSKALAVVDHVA------------------------ 65
           DV EEKAV        D+EKP VDDSKAL VV+ VA                        
Sbjct: 32  DVTEEKAVIPAPAPAADEEKPPVDDSKALVVVEKVADEPVAEKLTDEKAAHGGSNDRDLA 91

Query: 66  LAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERK 125
           LA VE EKR S IKAWEE+EKTKAENKA KK+SA+ +WEN+KKA++EA+LKKIEEQLE+K
Sbjct: 92  LARVESEKRNSLIKAWEENEKTKAENKATKKVSAILSWENTKKANIEAQLKKIEEQLEKK 151

Query: 126 KAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 183
           KAEYAEKMKNK A++HKEAEEKRAMVEA++GE++LKAEE+AAKYRATG +PKK++GCF
Sbjct: 152 KAEYAEKMKNKAAMIHKEAEEKRAMVEAKKGEELLKAEEMAAKYRATGNSPKKVMGCF 209

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|432278309|gb|AGB07445.1| remorin [Morus indica]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 141/202 (69%), Gaps = 22/202 (10%)

Query: 1   MAEEQVKKVEAETPAAPAPAPA-LAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALA 59
           MAEEQ  KVE E P++  P  A + PA  P     DV EEK+V      E   D+SKALA
Sbjct: 1   MAEEQPIKVEPEAPSSEPPTEAKVKPAEEPP---KDVTEEKSVIPHPPPEDKPDESKALA 57

Query: 60  VVD------------------HVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVA 101
           VVD                     LA V  EKR S I+AWEESEK+KAENKA K +S++ 
Sbjct: 58  VVDMEPEPAAEKSSSEGSINRDAVLARVATEKRLSLIRAWEESEKSKAENKAHKNVSSIG 117

Query: 102 AWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLK 161
           AWENSKKAS+EA+LKK EE LE+KKAEY EKMKNK+AL+HKEAEE++A++EA+RGE++LK
Sbjct: 118 AWENSKKASVEAQLKKFEENLEKKKAEYVEKMKNKIALIHKEAEERKAIIEAKRGEELLK 177

Query: 162 AEEIAAKYRATGTTPKKLLGCF 183
           AEE AAKYRATGT PKKLLGCF
Sbjct: 178 AEESAAKYRATGTGPKKLLGCF 199

Source: Morus indica

Species: Morus indica

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.797	0.737	0.605	6.6e-42
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.797	0.688	0.594	2e-40
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.781	0.707	0.582	1.8e-39
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.797	0.834	0.561	7.8e-39
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.808	0.778	0.564	3.4e-38
TAIR|locus:2127058	123	AT4G00670 "AT4G00670" [Arabido	0.612	0.910	0.389	6.5e-19
TAIR|locus:2054376	274	AT2G41870 "AT2G41870" [Arabido	0.601	0.401	0.336	5.3e-13
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.732	0.275	0.298	7.4e-13
TAIR|locus:2103508	296	AT3G57540 "AT3G57540" [Arabido	0.650	0.402	0.302	2.4e-12
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.579	0.208	0.348	9.2e-11

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 89/147 (60%), Positives = 108/147 (73%)

Query:    38 EEKAVTQLHDQE-KPVDDSKALAVVDHVALAEVEKEKRESFIKAWEESEKTKAENKAQKK 96
             + KA+  +  +  +P D+ K  ++     LA V  EKR S IKAWEESEK+KAENKAQKK
Sbjct:    52 DSKALVVVETKAPEPADEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKK 111

Query:    97 LSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRG 156
             +SA+ AWEN              EQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RG
Sbjct:   112 VSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRG 171

Query:   157 EDVLKAEEIAAKYRATGTTPKKLLGCF 183
             ED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:   172 EDLLKAEELAAKYRATGTAPKKILGIF 198

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 88/148 (59%), Positives = 107/148 (72%)

Query:    38 EEKAVTQLHDQ-EKPVDDSKALAVVDH-VALAEVEKEKRESFIKAWEESEKTKAENKAQK 95
             + KA+T +    E+P     A A +D  V LA++ KEKR SF++AWEESEK+KAENKA+K
Sbjct:    65 DSKALTVVEKPVEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEK 124

Query:    96 KLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARR 155
             K++ V AWEN              EQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+R
Sbjct:   125 KIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKR 184

Query:   156 GEDVLKAEEIAAKYRATGTTPKKLLGCF 183
             GEDVLKAEE AAKYRATG  PK   GCF
Sbjct:   185 GEDVLKAEETAAKYRATGIVPKATCGCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 85/146 (58%), Positives = 106/146 (72%)

Query:    38 EEKAVTQLHDQEKPVDDSKALAVVDHVA-LAEVEKEKRESFIKAWEESEKTKAENKAQKK 96
             + KA+  +  +E  V++ K    V+  A LA VE EKR S IKAWEE+EK K ENKA+KK
Sbjct:    58 DSKAIVPVVPKE--VEEEKKEGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKK 115

Query:    97 LSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRG 156
             LS++ +WEN              EQLE+KKAEY E+MKNK+A +HKEAEEKRAM+EA+RG
Sbjct:   116 LSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRG 175

Query:   157 EDVLKAEEIAAKYRATGTTPKKLLGC 182
             E++LKAEE+AAKYRATGT PKKL GC
Sbjct:   176 EEILKAEELAAKYRATGTAPKKLFGC 201

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 82/146 (56%), Positives = 102/146 (69%)

Query:    38 EEKAVTQLHDQEKPVDDSKALAVVDHVALAEVEKEKRESFIKAWEESEKTKAENKAQKKL 97
             + KA+  +   ++P +D K  +V     L  +E++KR S IKAWEE+EK+K ENKAQKK+
Sbjct:    30 DSKAIVLVVAAKEPTEDKKVGSVHRDAVLVRLEQDKRISLIKAWEEAEKSKVENKAQKKI 89

Query:    98 SAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 157
             S+V AWEN              EQL +KKA Y E+MKNK+A +HKEAEEKRAM EA+RGE
Sbjct:    90 SSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEAEEKRAMTEAKRGE 149

Query:   158 DVLKAEEIAAKYRATGTTPKKLLGCF 183
             DVLKAEE+AAKYRATGT P KL G F
Sbjct:   150 DVLKAEEMAAKYRATGTAPTKLFGFF 175

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 88/156 (56%), Positives = 109/156 (69%)

Query:    33 NNDVAEEKAVTQLHDQEKPVDD---SKALA-VVDH-VALAEVEKEKRESFIKAWEESEKT 87
             N    E KA+  +   EKP+++    KA +   D  V LA++EKEK+ SFIKAWEESEK+
Sbjct:    38 NPPPVESKALAVV---EKPIEEHTPKKASSGSADRDVILADLEKEKKTSFIKAWEESEKS 94

Query:    88 KAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEK 147
             KAEN+AQKK+S V AWEN              E+LE+KKA+Y EKMKNKVA +HK AEEK
Sbjct:    95 KAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEK 154

Query:   148 RAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 183
             RAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:   155 RAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2127058 AT4G00670 "AT4G00670" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 44/113 (38%), Positives = 69/113 (61%)

Query:    72 EKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAE 131
             +++   IKAW+E + TK  NK QKKL  ++ WE                +++ KK E +E
Sbjct:    11 DEQSKVIKAWKELKITKVNNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKSE 70

Query:   132 KMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKL-LGCF 183
             K++N+ A VH +A++K+A V+ RR +++L AEE AA+++A G  PKK  L CF
Sbjct:    71 KLRNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2054376 AT2G41870 "AT2G41870" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 37/110 (33%), Positives = 60/110 (54%)

Query:    69 VEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAE 128
             V++E+ E+ I AW+ ++  K  N+ +++ + +  W N               +LE +KA+
Sbjct:   158 VKREEVEAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAK 217

Query:   129 YAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKK 178
               EK +N VA   ++AEE+RA  EA+RG +V K  E+A   RA G  P K
Sbjct:   218 AMEKTQNNVAKAQRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPPAK 267

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 7.4e-13, P = 7.4e-13
 Identities = 40/134 (29%), Positives = 63/134 (47%)

Query:    50 KPVDDSKALAVVDHVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXX 109
             K  +D  A   +   A  +  K   E+   AWEE+EK K   + +++   + AWEN    
Sbjct:   349 KEDEDKDASTSLKTKASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKA 408

Query:   110 XXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKY 169
                        ++ER K    +++  K+A + ++AEEKRA  EA++     K E+ A + 
Sbjct:   409 KSEAEMKKTEVKVERIKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQI 468

Query:   170 RATGTTPKKLLGCF 183
             R TG  P  L  CF
Sbjct:   469 RRTGKVPSLLFSCF 482

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103508 AT3G57540 "AT3G57540" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 36/119 (30%), Positives = 64/119 (53%)

Query:    60 VVDHVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXX 119
             +V   ++  V++E+ E+ I AW+ ++  K  N+ +++ + +  W N              
Sbjct:   171 MVTTASVQRVKREEVEAKITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIE 230

Query:   120 EQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKK 178
              +LE ++A+  EK +NKVA   ++AEE+RA  E +RG +V +  E+A   RA G  P K
Sbjct:   231 RKLEDRRAKAMEKTQNKVAKAQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPPAK 289

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 38/109 (34%), Positives = 58/109 (53%)

Query:    68 EVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKA 127
             ++E EKR +   AWEE+EK+K   + +++   + AWE+               ++E+ KA
Sbjct:   392 KIEFEKRAT---AWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEAKVEQMKA 448

Query:   128 EYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTP 176
             E   K+  K+AL  + +EEKRA+ EAR+  D  KA   A   R TG  P
Sbjct:   449 EAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGRIP 497

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93788	REMO_SOLTU	No assigned EC number	0.6165	0.9562	0.8838	N/A	no
Q9M2D8	Y3126_ARATH	No assigned EC number	0.6407	0.8032	0.6933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	4e-27

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score = 98.6 bits (246), Expect = 4e-27
 Identities = 67/111 (60%), Positives = 82/111 (73%)

Query: 69  VEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAE 128
            +K + ES   AWEE+EK K  NK Q++ + + AWEN KKA  EA+LKKIE +LE+KKAE
Sbjct: 1   SKKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAE 60

Query: 129 YAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKL 179
            AEK+KNK+A  HK+AEEKRA  EA+RGE+  KAEE AAK RATG  P KL
Sbjct: 61  AAEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKL 111

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	100.0
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	98.01
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	96.56

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=100.00  E-value=1.1e-37  Score=240.97  Aligned_cols=108  Identities=56%  Similarity=0.790  Sum_probs=105.6

Q ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078           71 KEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAM  150 (183)
Q Consensus        71 ~ekr~S~a~AWEeaEkaK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEekRA~  150 (183)
                      .+.+++++++||+++++|+++||++++++|++|||+|+++|+++|+++|++||++|+.++|+|+|+|+.||++|+++|++
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhhcCCCCCC
Q 030078          151 VEARRGEDVLKAEEIAAKYRATGTTPKK  178 (183)
Q Consensus       151 aeakr~ee~~Ka~EkA~k~R~TGk~P~s  178 (183)
                      ++++|+++++++.++|++||+||++|++
T Consensus        82 aea~r~~~~~k~~ekA~~~R~tG~~P~~  109 (111)
T PF03763_consen   82 AEARRGEEIAKAEEKAAKIRATGKVPSK  109 (111)
T ss_pred             HHHHHhhHHHhHHHHHHHHHhCCCCCcc
Confidence            9999999999999999999999999987

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=98.01  E-value=1.4e-06  Score=61.14  Aligned_cols=29  Identities=55%  Similarity=0.628  Sum_probs=25.7

Q ss_pred             CCchhhhhhccCCCCCCCCCCccchhhhhh
Q 030078           33 NNDVAEEKAVTQLHDQEKPVDDSKALAVVD   62 (183)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~skal~~~~   62 (183)
                      ++|++++++++|||. ++..||||||++|+
T Consensus         4 ~~dva~ek~~~PpP~-~~k~ddSKAl~vVe   32 (57)
T PF03766_consen    4 AKDVAEEKSVIPPPA-EEKPDDSKALVVVE   32 (57)
T ss_pred             chhhccccCCCCCCC-CCCCCccceEEEee
Confidence            589999999998886 67889999999986

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=96.56  E-value=0.072  Score=41.50  Aligned_cols=81  Identities=23%  Similarity=0.333  Sum_probs=63.1

Q ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078           70 EKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRA  149 (183)
Q Consensus        70 ~~ekr~S~a~AWEeaEkaK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEekRA  149 (183)
                      ..++.++.|.+||...++|+....++.+.++.-=-..---+..-.|..+..+.|.+|+.+..+-.+.+..+..+|.-.|.
T Consensus        23 r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R~  102 (111)
T PF03763_consen   23 RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIRA  102 (111)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHh
Confidence            34556899999999999999999999998764322222234445566677889999999999999999999999888775


Q ss_pred             H
Q 030078          150 M  150 (183)
Q Consensus       150 ~  150 (183)
                      .
T Consensus       103 t  103 (111)
T PF03763_consen  103 T  103 (111)
T ss_pred             C
Confidence            3

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 3  EEQ-VKKVEAE-TPAAPAPAPALA 24
          E+Q +KK++A     A   APALA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00