Citrus Sinensis ID: 030109

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
MGSFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD
ccccEEEEEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEEEcccccEEEEEEcccccEEEEcEEEEccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEccccc
cccEEccccEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEcccccEEEEcEEEEEccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHEcccccEEEEEEEEccEEEEEEEEcccc
MGSFFYILTscradkcvmassgfQADVKALQKLLAARHLIYQHqhnkqmscpgMAQLLSNtlyykrffpyysfnvlggldnegkgcvytydavgsyervgyssqgsgstlimpfldnqlkspsplllpaqdavtplseaEAVDLVKTCFAsaterdiytgdkLEIVVLNKGGIHREYMELRKD
MGSFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAsaterdiytgdkleivvlnkggihreymelrkd
MGSFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD
***FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDN********LL***DAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREY******
*GSFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRK*
MGSFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD
**SFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELR**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query183 2.2.26 [Sep-21-2011]
O82531223 Proteasome subunit beta t N/A no 0.934 0.766 0.918 2e-91
P42742223 Proteasome subunit beta t yes no 0.934 0.766 0.842 3e-83
O64464221 Proteasome subunit beta t yes no 0.934 0.773 0.836 6e-83
Q86A21236 Proteasome subunit beta t yes no 0.907 0.703 0.526 5e-46
Q9IB84238 Proteasome subunit beta t N/A no 0.907 0.697 0.470 1e-39
Q9IB83237 Proteasome subunit beta t N/A no 0.907 0.700 0.470 1e-39
P20618241 Proteasome subunit beta t yes no 0.901 0.684 0.467 7e-39
O09061240 Proteasome subunit beta t yes no 0.901 0.687 0.461 2e-38
Q2TBX6241 Proteasome subunit beta t yes no 0.901 0.684 0.461 2e-38
P18421240 Proteasome subunit beta t yes no 0.901 0.687 0.456 2e-37
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1 Back     alignment and function desciption
 Score =  334 bits (857), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/171 (91%), Positives = 165/171 (96%)

Query: 13  ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
           ADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCP M QLLSNTLYYKRFFPYYS
Sbjct: 53  ADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYS 112

Query: 73  FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 132
           FNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA
Sbjct: 113 FNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172

Query: 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
           VTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN  GI RE MELRKD
Sbjct: 173 VTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Petunia hybrida (taxid: 4102)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2 Back     alignment and function description
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1 Back     alignment and function description
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1 Back     alignment and function description
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1 Back     alignment and function description
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1 Back     alignment and function description
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2 Back     alignment and function description
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1 Back     alignment and function description
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1 Back     alignment and function description
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
356526807223 PREDICTED: proteasome subunit beta type- 0.934 0.766 0.929 4e-91
357454307231 Proteasome subunit beta type [Medicago t 0.934 0.740 0.923 3e-90
351734454223 uncharacterized protein LOC100306148 [Gl 0.934 0.766 0.923 6e-90
17380185223 RecName: Full=Proteasome subunit beta ty 0.934 0.766 0.918 7e-90
388496148237 unknown [Medicago truncatula] 0.928 0.717 0.923 1e-89
388505884223 unknown [Lotus japonicus] 0.934 0.766 0.923 2e-89
357492211223 Proteasome subunit beta type [Medicago t 0.934 0.766 0.906 8e-89
366984552223 proteasome subunit beta type 1 [Gossypiu 1.0 0.820 0.851 9e-89
225453909223 PREDICTED: proteasome subunit beta type- 1.0 0.820 0.862 1e-88
449525251171 PREDICTED: proteasome subunit beta type- 0.934 1.0 0.883 1e-85
>gi|356526807|ref|XP_003532008.1| PREDICTED: proteasome subunit beta type-1-like [Glycine max] Back     alignment and taxonomy information
 Score =  338 bits (868), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 159/171 (92%), Positives = 167/171 (97%)

Query: 13  ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
           A+KCVMASSGFQADVKALQK+L+ARHLIYQHQHNKQMSCP MAQLLSNTLYYKRFFPYY+
Sbjct: 53  AEKCVMASSGFQADVKALQKVLSARHLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYA 112

Query: 73  FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 132
           FNVLGGLDNEGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA
Sbjct: 113 FNVLGGLDNEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172

Query: 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
           VTPLSEAEAVDLVKT FASATERDIYTGDK+EIV+LN  GIHREYM+LRKD
Sbjct: 173 VTPLSEAEAVDLVKTVFASATERDIYTGDKVEIVILNASGIHREYMDLRKD 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357454307|ref|XP_003597434.1| Proteasome subunit beta type [Medicago truncatula] gi|355486482|gb|AES67685.1| Proteasome subunit beta type [Medicago truncatula] Back     alignment and taxonomy information
>gi|351734454|ref|NP_001238324.1| uncharacterized protein LOC100306148 [Glycine max] gi|255627685|gb|ACU14187.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|17380185|sp|O82531.1|PSB1_PETHY RecName: Full=Proteasome subunit beta type-1; AltName: Full=20S proteasome alpha subunit F; AltName: Full=20S proteasome subunit beta-6 gi|3608485|gb|AAC35983.1| proteasome beta subunit [Petunia x hybrida] Back     alignment and taxonomy information
>gi|388496148|gb|AFK36140.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388505884|gb|AFK41008.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357492211|ref|XP_003616394.1| Proteasome subunit beta type [Medicago truncatula] gi|355517729|gb|AES99352.1| Proteasome subunit beta type [Medicago truncatula] Back     alignment and taxonomy information
>gi|366984552|gb|AEX09185.1| proteasome subunit beta type 1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|225453909|ref|XP_002279266.1| PREDICTED: proteasome subunit beta type-1 [Vitis vinifera] gi|296089152|emb|CBI38855.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449525251|ref|XP_004169631.1| PREDICTED: proteasome subunit beta type-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
TAIR|locus:2101846223 PBF1 [Arabidopsis thaliana (ta 0.934 0.766 0.842 4.5e-75
DICTYBASE|DDB_G0272969236 psmB1 "proteasome subunit beta 0.907 0.703 0.526 6.6e-42
UNIPROTKB|Q9IB83237 psmb1-B "Proteasome subunit be 0.907 0.700 0.470 1.9e-37
UNIPROTKB|Q9IB84238 psmb1-A "Proteasome subunit be 0.907 0.697 0.470 1.9e-37
ZFIN|ZDB-GENE-040618-2237 psmb1 "proteasome (prosome, ma 0.907 0.700 0.458 6.3e-37
UNIPROTKB|P20618241 PSMB1 "Proteasome subunit beta 0.907 0.688 0.470 1.7e-36
UNIPROTKB|G5E589241 PSMB1 "Proteasome subunit beta 0.907 0.688 0.464 2.1e-36
UNIPROTKB|Q6JLB2237 PSMB1 "Proteasome subunit beta 0.907 0.700 0.458 2.7e-36
UNIPROTKB|I3LQ51241 PSMB1 "Proteasome subunit beta 0.907 0.688 0.464 2.7e-36
UNIPROTKB|Q2TBX6241 PSMB1 "Proteasome subunit beta 0.907 0.688 0.464 3.5e-36
TAIR|locus:2101846 PBF1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 144/171 (84%), Positives = 157/171 (91%)

Query:    13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
             AD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCP MAQLLSNTLY+KRFFPYY+
Sbjct:    53 ADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYA 112

Query:    73 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 132
             FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+
Sbjct:   113 FNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDS 172

Query:   133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
              TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L   GI  E M+LRKD
Sbjct:   173 NTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223
GO:0004175 "endopeptidase activity" evidence=IEA
GO:0004298 "threonine-type endopeptidase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008233 "peptidase activity" evidence=ISS
GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA
GO:0000502 "proteasome complex" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
GO:0005839 "proteasome core complex" evidence=TAS
DICTYBASE|DDB_G0272969 psmB1 "proteasome subunit beta type 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9IB83 psmb1-B "Proteasome subunit beta type-1-B" [Carassius auratus (taxid:7957)] Back     alignment and assigned GO terms
UNIPROTKB|Q9IB84 psmb1-A "Proteasome subunit beta type-1-A" [Carassius auratus (taxid:7957)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040618-2 psmb1 "proteasome (prosome, macropain) subunit, beta type, 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P20618 PSMB1 "Proteasome subunit beta type-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G5E589 PSMB1 "Proteasome subunit beta type" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6JLB2 PSMB1 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQ51 PSMB1 "Proteasome subunit beta type" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBX6 PSMB1 "Proteasome subunit beta type-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O64464PSB1_ORYSJ3, ., 4, ., 2, 5, ., 10.83620.93440.7737yesno
Q86A21PSB1_DICDI3, ., 4, ., 2, 5, ., 10.52660.90710.7033yesno
P42742PSB1_ARATH3, ., 4, ., 2, 5, ., 10.84210.93440.7668yesno
O82531PSB1_PETHY3, ., 4, ., 2, 5, ., 10.91810.93440.7668N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.25.10.979
3rd Layer3.4.250.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
cd03757212 cd03757, proteasome_beta_type_1, proteasome beta t 2e-95
cd01912189 cd01912, proteasome_beta, proteasome beta subunit 5e-53
cd01906182 cd01906, proteasome_protease_HslV, proteasome_prot 9e-38
COG0638236 COG0638, PRE1, 20S proteasome, alpha and beta subu 4e-29
pfam00227188 pfam00227, Proteasome, Proteasome subunit 6e-29
cd03764188 cd03764, proteasome_beta_archeal, Archeal proteaso 1e-25
TIGR03634185 TIGR03634, arc_protsome_B, proteasome endopeptidas 1e-25
cd03759195 cd03759, proteasome_beta_type_3, proteasome beta t 2e-16
cd01901164 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term 1e-15
cd03760197 cd03760, proteasome_beta_type_4, proteasome beta t 5e-11
cd03758193 cd03758, proteasome_beta_type_2, proteasome beta t 4e-09
cd03762188 cd03762, proteasome_beta_type_6, proteasome beta t 2e-07
cd03763189 cd03763, proteasome_beta_type_7, proteasome beta t 7e-06
cd03761188 cd03761, proteasome_beta_type_5, proteasome beta t 3e-05
PTZ00488247 PTZ00488, PTZ00488, Proteasome subunit beta type-5 9e-05
>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit Back     alignment and domain information 
 Score =  275 bits (706), Expect = 2e-95
 Identities = 100/171 (58%), Positives = 117/171 (68%), Gaps = 4/171 (2%)

Query: 13  ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
            DKCV+ SSGFQAD+ AL K L AR  +Y++ HNK+MS   +AQLLS  LY +RFFPYY 
Sbjct: 46  TDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYV 105

Query: 73  FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 132
           FN+L G+D EGKG VY+YD VGSYER  YS+ GS S+LI P LDNQ+   +         
Sbjct: 106 FNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN----VE 161

Query: 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
            TPLS  EAV LVK  F SA ERDIYTGD LEIV++ K GI  E   LRKD
Sbjct: 162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212
>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit Back     alignment and domain information
>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV Back     alignment and domain information
>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit Back     alignment and domain information
>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit Back     alignment and domain information
>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit Back     alignment and domain information
>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit Back     alignment and domain information
>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid Back     alignment and domain information
>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit Back     alignment and domain information
>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit Back     alignment and domain information
>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit Back     alignment and domain information
>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit Back     alignment and domain information
>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit Back     alignment and domain information
>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 183
cd03757212 proteasome_beta_type_1 proteasome beta type-1 subu 100.0
cd03759195 proteasome_beta_type_3 proteasome beta type-3 subu 100.0
cd03761188 proteasome_beta_type_5 proteasome beta type-5 subu 100.0
cd03758193 proteasome_beta_type_2 proteasome beta type-2 subu 100.0
cd03760197 proteasome_beta_type_4 proteasome beta type-4 subu 100.0
KOG0179235 consensus 20S proteasome, regulatory subunit beta 100.0
cd03762188 proteasome_beta_type_6 proteasome beta type-6 subu 100.0
TIGR03634185 arc_protsome_B proteasome endopeptidase complex, a 100.0
cd03764188 proteasome_beta_archeal Archeal proteasome, beta s 100.0
COG0638236 PRE1 20S proteasome, alpha and beta subunits [Post 100.0
cd01912189 proteasome_beta proteasome beta subunit. The 20S p 100.0
cd03763189 proteasome_beta_type_7 proteasome beta type-7 subu 100.0
PTZ00488247 Proteasome subunit beta type-5; Provisional 100.0
cd03765236 proteasome_beta_bacterial Bacterial proteasome, be 100.0
cd03750227 proteasome_alpha_type_2 proteasome_alpha_type_2. T 100.0
TIGR03690219 20S_bact_beta proteasome, beta subunit, bacterial 100.0
cd03755207 proteasome_alpha_type_7 proteasome_alpha_type_7. T 100.0
cd03752213 proteasome_alpha_type_4 proteasome_alpha_type_4. T 100.0
cd03749211 proteasome_alpha_type_1 proteasome_alpha_type_1. T 100.0
TIGR03633224 arc_protsome_A proteasome endopeptidase complex, a 100.0
cd03754215 proteasome_alpha_type_6 proteasome_alpha_type_6. T 100.0
PTZ00246253 proteasome subunit alpha; Provisional 100.0
KOG0180204 consensus 20S proteasome, regulatory subunit beta 100.0
PRK03996241 proteasome subunit alpha; Provisional 100.0
cd01906182 proteasome_protease_HslV proteasome_protease_HslV. 100.0
cd03751212 proteasome_alpha_type_3 proteasome_alpha_type_3. T 100.0
cd01911209 proteasome_alpha proteasome alpha subunit. The 20S 100.0
cd03756211 proteasome_alpha_archeal proteasome_alpha_archeal. 100.0
PF00227190 Proteasome: Proteasome subunit; InterPro: IPR00135 100.0
cd03753213 proteasome_alpha_type_5 proteasome_alpha_type_5. T 100.0
TIGR03691228 20S_bact_alpha proteasome, alpha subunit, bacteria 100.0
KOG0177200 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0176241 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0175285 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0178249 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0183249 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0181233 consensus 20S proteasome, regulatory subunit alpha 99.97
KOG0863264 consensus 20S proteasome, regulatory subunit alpha 99.97
KOG0174224 consensus 20S proteasome, regulatory subunit beta 99.97
KOG0185256 consensus 20S proteasome, regulatory subunit beta 99.96
KOG0182246 consensus 20S proteasome, regulatory subunit alpha 99.96
KOG0173271 consensus 20S proteasome, regulatory subunit beta 99.95
KOG0184254 consensus 20S proteasome, regulatory subunit alpha 99.94
PRK05456172 ATP-dependent protease subunit HslV; Provisional 99.94
cd01913171 protease_HslV Protease HslV and the ATPase/chapero 99.93
cd01901164 Ntn_hydrolase The Ntn hydrolases (N-terminal nucle 99.93
TIGR03692171 ATP_dep_HslV ATP-dependent protease HslVU, peptida 99.92
COG5405178 HslV ATP-dependent protease HslVU (ClpYQ), peptida 98.79
COG3484255 Predicted proteasome-type protease [Posttranslatio 98.29
PF09894194 DUF2121: Uncharacterized protein conserved in arch 87.56
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit Back     alignment and domain information 
Probab=100.00  E-value=2e-44  Score=287.14  Aligned_cols=175  Identities=57%  Similarity=0.841  Sum_probs=163.5

Q ss_pred             ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109            5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK   84 (183)
Q Consensus         5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~   84 (183)
                      ..+||++|+++++|+++|..+|++.+.+++|.+++.|+++++++++++.+|+++++++|++|.+||++++||||||++++
T Consensus        38 ~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~  117 (212)
T cd03757          38 DSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGK  117 (212)
T ss_pred             CCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCC
Confidence            46799999999999999999999999999999999999999999999999999999999988889999999999998788


Q ss_pred             eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109           85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE  164 (183)
Q Consensus        85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~  164 (183)
                      |+||++||+|++.+++++|+|+|+++++++||+.|+.++|+.    .+.++||++||++++.+||+.+.+||+.++++++
T Consensus       118 p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~----~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~  193 (212)
T cd03757         118 GVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN----VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLE  193 (212)
T ss_pred             EEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc----CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEE
Confidence            999999999999999999999999999999999986322211    1124899999999999999999999999999999


Q ss_pred             EEEEcCCCeEEEeeeccCC
Q 030109          165 IVVLNKGGIHREYMELRKD  183 (183)
Q Consensus       165 I~ii~k~g~~~~~~~~~~~  183 (183)
                      |++|+++|++++.+++|+|
T Consensus       194 i~iit~~g~~~~~~~~~~~  212 (212)
T cd03757         194 IVIITKDGIEEETFPLRKD  212 (212)
T ss_pred             EEEEcCCCEEEEeeccCCC
Confidence            9999999999999999998

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit Back     alignment and domain information
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit Back     alignment and domain information
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit Back     alignment and domain information
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit Back     alignment and domain information
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit Back     alignment and domain information
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit Back     alignment and domain information
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit Back     alignment and domain information
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01912 proteasome_beta proteasome beta subunit Back     alignment and domain information
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit Back     alignment and domain information
>PTZ00488 Proteasome subunit beta type-5; Provisional Back     alignment and domain information
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit Back     alignment and domain information
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2 Back     alignment and domain information
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type Back     alignment and domain information
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7 Back     alignment and domain information
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4 Back     alignment and domain information
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1 Back     alignment and domain information
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit Back     alignment and domain information
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6 Back     alignment and domain information
>PTZ00246 proteasome subunit alpha; Provisional Back     alignment and domain information
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03996 proteasome subunit alpha; Provisional Back     alignment and domain information
>cd01906 proteasome_protease_HslV proteasome_protease_HslV Back     alignment and domain information
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3 Back     alignment and domain information
>cd01911 proteasome_alpha proteasome alpha subunit Back     alignment and domain information
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal Back     alignment and domain information
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins Back     alignment and domain information
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5 Back     alignment and domain information
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type Back     alignment and domain information
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05456 ATP-dependent protease subunit HslV; Provisional Back     alignment and domain information
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome Back     alignment and domain information
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid Back     alignment and domain information
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit Back     alignment and domain information
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
1iru_M213 Crystal Structure Of The Mammalian 20s Proteasome A 5e-40
3unb_L213 Mouse Constitutive 20s Proteasome In Complex With P 1e-39
1g0u_L241 A Gated Channel Into The Proteasome Core Particle L 3e-33
1ryp_M222 Crystal Structure Of The 20s Proteasome From Yeast 4e-33
1j2q_H202 20s Proteasome In Complex With Calpain-inhibitor I 2e-11
3h4p_a219 Proteasome 20s Core Particle From Methanocaldococcu 4e-10
3c91_H203 Thermoplasma Acidophilum 20s Proteasome With An Ope 6e-10
1ya7_H217 Implications For Interactions Of Proteasome With Pa 7e-10
1pma_B211 Proteasome From Thermoplasma Acidophilum Length = 2 7e-10
1vsy_H196 Proteasome Activator Complex Length = 196 1e-07
1g65_N196 Crystal Structure Of Epoxomicin:20s Proteasome Reve 1e-07
1ryp_H205 Crystal Structure Of The 20s Proteasome From Yeast 2e-07
3nzj_N215 Crystal Structure Of Yeast 20s Proteasome In Comple 2e-07
1ryp_J204 Crystal Structure Of The 20s Proteasome From Yeast 6e-07
1g0u_I205 A Gated Channel Into The Proteasome Core Particle L 6e-07
3unf_K204 Mouse 20s Immunoproteasome In Complex With Pr-957 L 6e-06
3unb_I205 Mouse Constitutive 20s Proteasome In Complex With P 2e-05
1iru_J205 Crystal Structure Of The Mammalian 20s Proteasome A 2e-05
3unb_K205 Mouse Constitutive 20s Proteasome In Complex With P 1e-04
1iru_L204 Crystal Structure Of The Mammalian 20s Proteasome A 2e-04
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 213 Back     alignment and structure 
Iteration: 1

 Score =  160 bits (404), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 107/170 (62%), Gaps = 4/170 (2%)
Query: 14  DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
           DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +
Sbjct: 48  DKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVY 107
Query: 74  NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
           N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +      
Sbjct: 108 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH---- 163
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
            PLS   A+ LVK  F SA ERD+YTGD L I ++ K GI  E + LRKD
Sbjct: 164 VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 213 Back     alignment and structure
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle Length = 241 Back     alignment and structure
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222 Back     alignment and structure
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202 Back     alignment and structure
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203 Back     alignment and structure
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217 Back     alignment and structure
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211 Back     alignment and structure
>pdb|1VSY|H Chain H, Proteasome Activator Complex Length = 196 Back     alignment and structure
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors Length = 196 Back     alignment and structure
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 205 Back     alignment and structure
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 215 Back     alignment and structure
>pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 204 Back     alignment and structure
>pdb|1G0U|I Chain I, A Gated Channel Into The Proteasome Core Particle Length = 205 Back     alignment and structure
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 204 Back     alignment and structure
>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205 Back     alignment and structure
>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205 Back     alignment and structure
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205 Back     alignment and structure
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 204 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
1iru_M213 20S proteasome; cell cycle, immune response, prote 9e-64
1ryp_M222 20S proteasome; multicatalytic proteinase, protein 4e-60
1ryp_J204 20S proteasome; multicatalytic proteinase, protein 9e-57
1iru_J205 20S proteasome; cell cycle, immune response, prote 1e-56
1iru_K201 20S proteasome; cell cycle, immune response, prote 6e-49
1ryp_H205 20S proteasome; multicatalytic proteinase, protein 5e-47
1iru_H205 20S proteasome; cell cycle, immune response, prote 1e-46
1g0u_M266 Proteasome component PRE4; ubiquitin, degradation, 2e-46
1iru_L204 20S proteasome; cell cycle, immune response, prote 8e-45
1ryp_N233 20S proteasome; multicatalytic proteinase, protein 1e-44
3h4p_A264 Proteasome subunit alpha; core particle, cytoplasm 2e-43
1j2q_H202 Proteasome beta subunit; ubiquitin, CP, hydrolase; 2e-41
1iru_I234 20S proteasome; cell cycle, immune response, prote 4e-39
1iru_N219 20S proteasome; cell cycle, immune response, prote 2e-36
1ryp_L212 20S proteasome; multicatalytic proteinase, protein 2e-36
3nzj_K287 Proteasome component PRE2; ubiquitin, protein degr 4e-36
3unf_N199 Proteasome subunit beta type-9; antigen presentati 1e-34
1ryp_I222 20S proteasome; multicatalytic proteinase, protein 2e-33
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 3e-32
3nzj_H261 Proteasome component PUP1; ubiquitin, protein degr 1e-30
1yar_H217 Proteasome beta subunit; proteasome 20S, PA26 prot 5e-30
2jay_A291 Proteasome; hydrolase; 1.99A {Mycobacterium tuberc 2e-25
3unf_H234 Proteasome subunit beta type-10; antigen presentat 3e-24
1q5q_H235 Proteasome beta-type subunit 1; proteasome assembl 2e-21
1q5r_H294 Proteasome beta-type subunit 1; proteasome assembl 2e-21
1iru_C261 20S proteasome; cell cycle, immune response, prote 8e-06
1iru_D248 20S proteasome; cell cycle, immune response, prote 1e-05
1ryp_F233 20S proteasome; multicatalytic proteinase, protein 3e-04
1ryp_C244 20S proteasome; multicatalytic proteinase, protein 3e-04
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 Back     alignment and structure
 Score =  194 bits (495), Expect = 9e-64
 Identities = 78/171 (45%), Positives = 106/171 (61%), Gaps = 4/171 (2%)

Query: 13  ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
            DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY 
Sbjct: 47  TDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYV 106

Query: 73  FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 132
           +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +     
Sbjct: 107 YNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVP- 165

Query: 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
              LS   A+ LVK  F SA ERD+YTGD L I ++ K GI  E + LRKD
Sbjct: 166 ---LSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222 Back     alignment and structure
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 Back     alignment and structure
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 Back     alignment and structure
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 Back     alignment and structure
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 Back     alignment and structure
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 Back     alignment and structure
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 Back     alignment and structure
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 Back     alignment and structure
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 Back     alignment and structure
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 Back     alignment and structure
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 Back     alignment and structure
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234 Back     alignment and structure
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 Back     alignment and structure
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 Back     alignment and structure
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 Back     alignment and structure
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 Back     alignment and structure
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 Back     alignment and structure
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 Back     alignment and structure
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261 Back     alignment and structure
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 Back     alignment and structure
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 Back     alignment and structure
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234 Back     alignment and structure
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 Back     alignment and structure
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 Back     alignment and structure
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261 Back     alignment and structure
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248 Back     alignment and structure
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233 Back     alignment and structure
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
1iru_M213 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_M222 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_J205 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_J204 20S proteasome; multicatalytic proteinase, protein 100.0
3h4p_a219 Proteasome subunit beta; core particle, cytoplasm, 100.0
1j2q_H202 Proteasome beta subunit; ubiquitin, CP, hydrolase; 100.0
1iru_H205 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_L204 20S proteasome; cell cycle, immune response, prote 100.0
1yar_H217 Proteasome beta subunit; proteasome 20S, PA26 prot 100.0
1ryp_L212 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_H205 20S proteasome; multicatalytic proteinase, protein 100.0
3unf_H234 Proteasome subunit beta type-10; antigen presentat 100.0
1ryp_A243 20S proteasome; multicatalytic proteinase, protein 100.0
3nzj_K287 Proteasome component PRE2; ubiquitin, protein degr 100.0
1iru_K201 20S proteasome; cell cycle, immune response, prote 100.0
1iru_N219 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_N233 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_I222 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_A246 20S proteasome; cell cycle, immune response, prote 100.0
3unf_N199 Proteasome subunit beta type-9; antigen presentati 100.0
3nzj_H261 Proteasome component PUP1; ubiquitin, protein degr 100.0
1ryp_C244 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_B233 20S proteasome; cell cycle, immune response, prote 100.0
1g0u_M266 Proteasome component PRE4; ubiquitin, degradation, 100.0
1iru_I234 20S proteasome; cell cycle, immune response, prote 100.0
1yar_A233 Proteasome alpha subunit; proteasome 20S, PA26 pro 100.0
1ryp_E242 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_C261 20S proteasome; cell cycle, immune response, prote 100.0
1q5q_H235 Proteasome beta-type subunit 1; proteasome assembl 100.0
3mi0_A248 Proteasome subunit alpha; enzyme inhibitors, lacto 100.0
1ryp_D241 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_G254 20S proteasome; cell cycle, immune response, prote 100.0
1iru_E241 20S proteasome; cell cycle, immune response, prote 100.0
3h4p_A264 Proteasome subunit alpha; core particle, cytoplasm 100.0
1ryp_G244 20S proteasome; multicatalytic proteinase, protein 100.0
3nzj_F288 Proteasome component C1; ubiquitin, protein degrad 100.0
1iru_F263 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_F233 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_D248 20S proteasome; cell cycle, immune response, prote 100.0
1q5q_A259 Proteasome alpha-type subunit 1; proteasome assemb 100.0
1q5r_H294 Proteasome beta-type subunit 1; proteasome assembl 100.0
1ryp_B250 20S proteasome; multicatalytic proteinase, protein 100.0
1j2p_A246 Alpha-ring, proteasome alpha subunit; hydrolase; 2 100.0
2jay_A291 Proteasome; hydrolase; 1.99A {Mycobacterium tuberc 100.0
1g3k_A174 ATP-dependent protease HSLV; hydrolase; 1.90A {Hae 99.96
1m4y_A171 ATP-dependent protease HSLV; N-terminal catalytic 99.96
2z3b_A180 ATP-dependent protease HSLV; N-terminal nucleophIl 99.96
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Back     alignment and structure
Probab=100.00  E-value=2.5e-43  Score=279.29  Aligned_cols=176  Identities=45%  Similarity=0.739  Sum_probs=162.4

Q ss_pred             cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109            4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG   83 (183)
Q Consensus         4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g   83 (183)
                      ...+||++|+++++++++|+.+|++.++++++.+++.|+++++++++++.+|+++++++|++|+|||++++||||||++|
T Consensus        38 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g  117 (213)
T 1iru_M           38 RDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG  117 (213)
T ss_dssp             SCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTS
T ss_pred             CCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCC
Confidence            45789999999999999999999999999999999999999999999999999999999998889999999999999877


Q ss_pred             ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109           84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL  163 (183)
Q Consensus        84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i  163 (183)
                      +|+||++||+|++.+++++|+|+|+++++++||+.|+.++..    ..+.++||++||++++++||..+.+||..+++++
T Consensus       118 ~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~----~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i  193 (213)
T 1iru_M          118 KGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ----NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDAL  193 (213)
T ss_dssp             CEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCS----SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEE
T ss_pred             CEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccc----ccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcE
Confidence            899999999999999999999999999999999995431100    0012389999999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEeeeccCC
Q 030109          164 EIVVLNKGGIHREYMELRKD  183 (183)
Q Consensus       164 ~I~ii~k~g~~~~~~~~~~~  183 (183)
                      +|++|+++|++++.+++|+|
T Consensus       194 ~v~vi~~~g~~~~~~~~r~d  213 (213)
T 1iru_M          194 RICIVTKEGIREETVSLRKD  213 (213)
T ss_dssp             EEEEEETTEEEEEEEECCCC
T ss_pred             EEEEEcCCCeEEEEeecCCC
Confidence            99999999999999999998
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Back     alignment and structure
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Back     alignment and structure
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Back     alignment and structure
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Back     alignment and structure
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Back     alignment and structure
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Back     alignment and structure
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Back     alignment and structure
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Back     alignment and structure
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Back     alignment and structure
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Back     alignment and structure
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Back     alignment and structure
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Back     alignment and structure
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5 Back     alignment and structure
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Back     alignment and structure
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Back     alignment and structure
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Back     alignment and structure
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Back     alignment and structure
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Back     alignment and structure
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Back     alignment and structure
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2 Back     alignment and structure
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Back     alignment and structure
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Back     alignment and structure
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Back     alignment and structure
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Back     alignment and structure
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Back     alignment and structure
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Back     alignment and structure
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Back     alignment and structure
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Back     alignment and structure
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Back     alignment and structure
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Back     alignment and structure
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Back     alignment and structure
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Back     alignment and structure
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Back     alignment and structure
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F* Back     alignment and structure
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Back     alignment and structure
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Back     alignment and structure
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Back     alignment and structure
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Back     alignment and structure
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Back     alignment and structure
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Back     alignment and structure
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Back     alignment and structure
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Back     alignment and structure
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Back     alignment and structure
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Back     alignment and structure
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 183
d1ryp1_222 d.153.1.4 (1:) Proteasome beta subunit (catalytic) 3e-38
d1iru1_213 d.153.1.4 (1:) Proteasome beta subunit (catalytic) 4e-31
d1rypj_204 d.153.1.4 (J:) Proteasome beta subunit (catalytic) 9e-31
d1iruj_204 d.153.1.4 (J:) Proteasome beta subunit (catalytic) 2e-28
d1irul_201 d.153.1.4 (L:) Proteasome beta subunit (catalytic) 3e-27
d1ryph_205 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 3e-25
d1ryp2_233 d.153.1.4 (2:) Proteasome beta subunit (catalytic) 7e-25
d1j2qh_202 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 3e-24
d1iruh_202 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 3e-24
d1rypk_198 d.153.1.4 (K:) Proteasome beta subunit (catalytic) 7e-24
d1iruk_199 d.153.1.4 (K:) Proteasome beta subunit (catalytic) 2e-23
d1rypa_243 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 2e-22
d1rypl_212 d.153.1.4 (L:) Proteasome beta subunit (catalytic) 3e-22
d1iru2_217 d.153.1.4 (2:) Proteasome beta subunit (catalytic) 4e-22
d1yarh1203 d.153.1.4 (H:1-203) Proteasome beta subunit (catal 1e-20
d1rypc_244 d.153.1.4 (C:) Proteasome alpha subunit (non-catal 1e-20
d1irui_220 d.153.1.4 (I:) Proteasome beta subunit (catalytic) 1e-20
d1rypi_222 d.153.1.4 (I:) Proteasome beta subunit (catalytic) 1e-19
d1irug_245 d.153.1.4 (G:) Proteasome alpha subunit (non-catal 1e-19
d1iruc_250 d.153.1.4 (C:) Proteasome alpha subunit (non-catal 1e-19
d1rypg_244 d.153.1.4 (G:) Proteasome alpha subunit (non-catal 2e-19
d1irua_244 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 3e-18
d1m4ya_171 d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma 4e-18
d1rypf_233 d.153.1.4 (F:) Proteasome alpha subunit (non-catal 2e-17
d1irud_243 d.153.1.4 (D:) Proteasome alpha subunit (non-catal 4e-16
d1irue_234 d.153.1.4 (E:) Proteasome alpha subunit (non-catal 6e-16
d1rypb_250 d.153.1.4 (B:) Proteasome alpha subunit (non-catal 1e-15
d1yara1221 d.153.1.4 (A:13-233) Proteasome alpha subunit (non 6e-15
d2z3ba1180 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus 1e-14
d1irub_233 d.153.1.4 (B:) Proteasome alpha subunit (non-catal 1e-14
d1q5qh_224 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 3e-14
d1rypd_241 d.153.1.4 (D:) Proteasome alpha subunit (non-catal 4e-14
d1rype_242 d.153.1.4 (E:) Proteasome alpha subunit (non-catal 1e-13
d1g3ka_173 d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i 3e-13
d1iruf_238 d.153.1.4 (F:) Proteasome alpha subunit (non-catal 6e-13
d1q5qa_227 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 2e-12
d1j2pa_243 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 8e-12
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (324), Expect = 3e-38
 Identities = 73/175 (41%), Positives = 104/175 (59%), Gaps = 5/175 (2%)

Query: 14  DKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLYYKRFFPYYS 72
           D  VM+++GF AD  AL K        Y   HN K++S    A+ + + LY KRFFPYY 
Sbjct: 48  DNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYV 107

Query: 73  FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS----PLLLP 128
             ++ GLD +GKG VY++D VGSYER    + G+ ++LIMPFLDNQ+   +         
Sbjct: 108 HTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGK 167

Query: 129 AQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
            +  +  LS  E + LV+  F SATER I  GD LEI+++ K G+ +E+ EL++D
Sbjct: 168 VKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 Back     information, alignment and structure
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 Back     information, alignment and structure
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 Back     information, alignment and structure
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 Back     information, alignment and structure
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Back     information, alignment and structure
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 Back     information, alignment and structure
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 Back     information, alignment and structure
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 Back     information, alignment and structure
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 Back     information, alignment and structure
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 Back     information, alignment and structure
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 Back     information, alignment and structure
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 Back     information, alignment and structure
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245 Back     information, alignment and structure
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250 Back     information, alignment and structure
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244 Back     information, alignment and structure
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 Back     information, alignment and structure
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Back     information, alignment and structure
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 Back     information, alignment and structure
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250 Back     information, alignment and structure
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221 Back     information, alignment and structure
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 Back     information, alignment and structure
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233 Back     information, alignment and structure
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 Back     information, alignment and structure
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241 Back     information, alignment and structure
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242 Back     information, alignment and structure
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 Back     information, alignment and structure
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 Back     information, alignment and structure
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227 Back     information, alignment and structure
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
d1iruj_204 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1ryp1_222 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1ryph_205 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1iruh_202 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypj_204 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1rypk_198 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1irul_201 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypl_212 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1irui_220 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1iruc_250 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1yarh1203 Proteasome beta subunit (catalytic) {Archaeon Ther 100.0
d1iru1_213 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1j2qh_202 Proteasome beta subunit (catalytic) {Archaeon Arch 100.0
d1irua_244 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypc_244 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1irug_245 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1ryp2_233 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1rypa_243 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypi_222 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1rypf_233 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypb_250 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1yara1221 Proteasome alpha subunit (non-catalytic) {Archaeon 100.0
d1irue_234 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1iru2_217 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rype_242 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1j2pa_243 Proteasome alpha subunit (non-catalytic) {Archaeon 100.0
d1iruk_199 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypd_241 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1iruf_238 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypg_244 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1irud_243 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1irub_233 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1q5qa_227 Proteasome alpha subunit (non-catalytic) {Rhodococ 100.0
d1q5qh_224 Proteasome beta subunit (catalytic) {Rhodococcus e 100.0
d2z3ba1180 HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14 99.74
d1m4ya_171 HslV (ClpQ) protease {Thermotoga maritima [TaxId: 99.72
d1g3ka_173 HslV (ClpQ) protease {Haemophilus influenzae [TaxI 99.66
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-40  Score=259.40  Aligned_cols=167  Identities=20%  Similarity=0.337  Sum_probs=159.7

Q ss_pred             cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109            4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG   83 (183)
Q Consensus         4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g   83 (183)
                      ...+||++|++|++++++|..+|++.+.+.++.+++.|++.++.+++++.+|+++++++|.+|++||++++||||||+++
T Consensus        36 ~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~  115 (204)
T d1iruj_          36 TDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKT  115 (204)
T ss_dssp             SCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTS
T ss_pred             CcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHhhhccceeEEEEEEEcCCC
Confidence            45689999999999999999999999999999999999999999999999999999999998889999999999999754


Q ss_pred             -ceEEEEEcCCCceeee-CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109           84 -KGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD  161 (183)
Q Consensus        84 -~p~Ly~iD~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~  161 (183)
                       +|.+|.+|+.|....+ .++++|+|+++++++||+.|++             +||.+||++++++||+.+.+||+.+++
T Consensus       116 ~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~~~-------------~ms~~ea~~l~~~al~~a~~rd~~sg~  182 (204)
T d1iruj_         116 FKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEP-------------NMDPDHLFETISQAMLNAVDRDAVSGM  182 (204)
T ss_dssp             CCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHGGGBTTSCS
T ss_pred             CceEEEEecCCCceeeecceEEechhHHHHHHHHHhcccc-------------CCCHHHHHHHHHHHHHHHHhhcccCCC
Confidence             6899999999998775 5899999999999999999997             999999999999999999999999999


Q ss_pred             cEEEEEEcCCCeEEEeeeccCC
Q 030109          162 KLEIVVLNKGGIHREYMELRKD  183 (183)
Q Consensus       162 ~i~I~ii~k~g~~~~~~~~~~~  183 (183)
                      +++|++|+|+|++++.+|+|+|
T Consensus       183 ~~~v~ii~k~gi~~~~~~~r~D  204 (204)
T d1iruj_         183 GVIVHIIEKDKITTRTLKARMD  204 (204)
T ss_dssp             CEEEEEEESSBEEEEEBCCCCC
T ss_pred             cEEEEEEeCCCEEEEEEecCCC
Confidence            9999999999999999999998
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure