Citrus Sinensis ID: 030134

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQEAQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRHLH
Secondary Structure (PSIPRED)
cHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccc
Coil and Loop (DISEMBL)
MERILERYERYCYAERQlqaneiepngnwtLEYSKLKARMEVLQRNQkhfmgedlaDLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQEAQCREQQQQLNHDWNSSNVHLMQTLTnssyqmgggsgeededtptghranALLPAWMLRHLH
Flexible Loop (DISEMBL)
MERILERYERYCYAERqlqaneiepngnWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQEAQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRHLH
Low Complexity Region (SEG)
MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISelqkkdkllkeqnnllakkvkekekllSqeaqcreqqqqLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRHLH
Disordered region (IsUnstruct)
****LERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQ*****F*****************************************************************************************************************************W******
Disordered Region (DISOPRED)
MERILERYER*******************TLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDS****IRSRKNQLMLQSISELQKKDKLLKEQNNLLA********************************************************************WMLRHL*
Disordered Region (DISEMBL)
MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLL*************NHDWNSSNVHLMQTLTNSS****************GHRANALLPAWMLRHLH
Disordered Region (DISPRO)
MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQEA******************************************************W******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRHLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q42429	250	Agamous-like MADS-box pro	N/A	no	0.945	0.688	0.528	6e-44
Q38876	242	Agamous-like MADS-box pro	yes	no	0.928	0.698	0.521	2e-41
O22328	250	Agamous-like MADS-box pro	N/A	no	0.967	0.704	0.507	1e-39
Q41274	241	Agamous-like MADS-box pro	N/A	no	0.950	0.717	0.505	1e-39
P0DI14	256	Floral homeotic protein A	N/A	no	0.912	0.648	0.502	1e-37
D7KWY6	256	Floral homeotic protein A	N/A	no	0.912	0.648	0.480	1e-37
Q8GTF4	256	Floral homeotic protein A	N/A	no	0.912	0.648	0.480	2e-37
B4YPV4	256	Floral homeotic protein A	N/A	no	0.912	0.648	0.480	2e-37
Q96355	256	Floral homeotic protein A	N/A	no	0.912	0.648	0.480	2e-37
Q41276	254	Floral homeotic protein A	N/A	no	0.912	0.653	0.491	4e-37

>sp|Q42429|AGL8_SOLTU Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1

 Score =  176 bits (447), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 134/195 (68%), Gaps = 23/195 (11%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MER+LERYERY +AERQL   +    G+WTLE++KLKAR+EVLQRNQKH++GEDL  L++
Sbjct: 63  MERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNM 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++E Q+DS LK IRSRKNQLM +SIS LQK+D+ L+EQNN L+KKVKE+EK ++Q+
Sbjct: 123 KELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVAQQ 182

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTLTNS----SYQM----------GGGSGEEDEDTPTG 166
            Q  +Q    NH+ NSS   L Q L +     +YQ           GG S ++      G
Sbjct: 183 NQWDQQ----NHEINSSTFVLPQQLDSPHLGEAYQNTNVVDNGEVEGGNSSQQQ-----G 233

Query: 167 HRANALLPAWMLRHL 181
              N ++P WMLRHL
Sbjct: 234 AANNTVMPQWMLRHL 248

Probable transcription factor.
Solanum tuberosum (taxid: 4113)

>sp|Q38876|AGL8_ARATH Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 126/184 (68%), Gaps = 15/184 (8%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERY+RY Y+++QL   ++  + NW LE++KLKAR+EVL++N+++FMGEDL  LSL
Sbjct: 63  MERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQS+E Q+D+ +K IRSRKNQ M +SIS LQKKDK L++ NN L KK+KE+EK   Q 
Sbjct: 123 KELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKTGQ- 181

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTLTNSSY-----QMGGGSGEEDEDTPTGHRANALLPA 175
                Q+ QL    NSS+V L Q    SS      ++GG +G     T      N+LLPA
Sbjct: 182 -----QEGQLVQCSNSSSVLLPQYCVTSSRDGFVERVGGENGGASSLT----EPNSLLPA 232

Query: 176 WMLR 179
           WMLR
Sbjct: 233 WMLR 236

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1 and CAULIFLOWER. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 and CAULIFLOWER in the up-regulation of LEAFY. Is also required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique. Probably not required for fruit elongation but instead is required to prevent ectopic activity of IND.

Arabidopsis thaliana (taxid: 3702)

>sp|O22328|AGL8_SOLCO Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 130/193 (67%), Gaps = 17/193 (8%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MER+LERYERY +AE+QL   +    G+WTLE +KLKAR+EVLQRN+K ++GEDL  L++
Sbjct: 63  MERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNM 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++E Q+ S LK IRSRKNQLM +SIS LQK+D+ L+EQNN L+KKVKE+EK + Q+
Sbjct: 123 KELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVEQQ 182

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGGGS--------GEEDEDTPT---GHRA 169
            Q  +Q    NH+ NSS   L Q L   S  +G  S        GE +    +   G   
Sbjct: 183 NQWDQQ----NHEINSSTFVLPQQL--DSPHLGEASQNTNVVDNGEVEGGNSSQXQGAAN 236

Query: 170 NALLPAWMLRHLH 182
           N ++P WM+RHL+
Sbjct: 237 NTVMPQWMVRHLN 249

Probable transcription factor.

Solanum commersonii (taxid: 4109)

>sp|Q41274|AGL8_SINAL Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 123/180 (68%), Gaps = 7/180 (3%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           ME+ILERY+RY Y+++QL   +I  + NW LE++KLKAR+EVL++N+++FMGEDL  LSL
Sbjct: 63  MEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK-LLSQ 119
           KELQS+E Q+ + +K IRSRKNQ M +SIS LQKKDK+L++ NN L KK+KE+EK  + Q
Sbjct: 123 KELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQ 182

Query: 120 EAQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLR 179
           E Q       +    NSS +     LT+S     G    E+E   +    N+LLPAWMLR
Sbjct: 183 EVQL------IQCSNNSSILQPQYCLTSSRDGFVGRVEGENEGASSLAEPNSLLPAWMLR 236

Probable transcription factor.

Sinapis alba (taxid: 3728)

>sp|P0DI14|AP1_BRARP Floral homeotic protein APETALA 1 OS=Brassica rapa subsp. pekinensis GN=AP1 PE=3 SV=1

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 127/183 (69%), Gaps = 17/183 (9%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           ME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S 
Sbjct: 63  MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSP 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+D+ LK IRSRKNQLM  S++ELQ+K+K ++EQN++L+K++KE+EK+L  +
Sbjct: 123 KELQNLEQQLDTALKHIRSRKNQLMYDSVNELQRKEKAIQEQNSMLSKQIKEREKVLRAQ 182

Query: 121 AQCREQQQQLNHDWNSSNV-----HLMQTLTNSSYQ------MGGGSGEEDEDTPTGHRA 169
              +EQ  Q NH  N         H +Q     S+Q      MGG   EED   P   R 
Sbjct: 183 ---QEQWDQQNHGQNMPPPPPPQEHQIQHPYMLSHQPSPFLNMGGLYEEED---PMAMRR 236

Query: 170 NAL 172
           N L
Sbjct: 237 NDL 239

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica rapa subsp. pekinensis (taxid: 51351)

>sp|D7KWY6|AP1_ARALL Floral homeotic protein APETALA 1 OS=Arabidopsis lyrata subsp. lyrata GN=AP1 PE=3 SV=1

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 127/183 (69%), Gaps = 17/183 (9%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           ME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S 
Sbjct: 63  MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLNAMSP 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+D+ LK IR+RKNQLM +SI+ELQ+K+K ++EQN++L+K++KE+EK+L  +
Sbjct: 123 KELQNLEQQLDTALKHIRTRKNQLMYESINELQRKEKAIQEQNSMLSKQIKEREKILRAQ 182

Query: 121 AQCREQQQQLNHDWN-----------SSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRA 169
              +EQ  Q NH  N             + +++    +    MGG   EED   P   R 
Sbjct: 183 ---QEQWDQQNHGHNMPPPPPPQQHQIQHPYMLSHQPSPFLNMGGLYQEED---PMAMRR 236

Query: 170 NAL 172
           N L
Sbjct: 237 NEL 239

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|Q8GTF4|AP1C_BRAOB Floral homeotic protein APETALA 1 C OS=Brassica oleracea var. botrytis GN=AP1C PE=2 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 126/183 (68%), Gaps = 17/183 (9%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           ME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S 
Sbjct: 63  MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSP 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+D+ LK IRSRKNQLM  S++ELQ+K+K ++EQN++L+K++KE+EK+L  +
Sbjct: 123 KELQNLEQQLDTALKHIRSRKNQLMYDSVNELQRKEKAIQEQNSMLSKQIKEREKVLMAQ 182

Query: 121 AQCREQQQQLNHDWN-----------SSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRA 169
              +EQ  Q NH  N             + +++    +    MGG   EED   P   R 
Sbjct: 183 ---QEQWDQQNHGQNMPSPPPPQQHQIQHPYMLSHQPSPFLNMGGLYQEED---PMAMRR 236

Query: 170 NAL 172
           N L
Sbjct: 237 NDL 239

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea var. botrytis (taxid: 3715)

>sp|B4YPV4|AP1C_BRAOA Floral homeotic protein APETALA 1 C OS=Brassica oleracea var. alboglabra GN=AP1C PE=3 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 126/183 (68%), Gaps = 17/183 (9%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           ME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S 
Sbjct: 63  MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSP 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+D+ LK IRSRKNQLM  S++ELQ+K+K ++EQN++L+K++KE+EK+L  +
Sbjct: 123 KELQNLEQQLDTALKHIRSRKNQLMYDSVNELQRKEKAIQEQNSMLSKQIKEREKVLMAQ 182

Query: 121 AQCREQQQQLNHDWN-----------SSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRA 169
              +EQ  Q NH  N             + +++    +    MGG   EED   P   R 
Sbjct: 183 ---QEQWDQQNHGQNMPSPPPPQQHQIQHPYMLSHQPSPFLNMGGLYQEED---PMAMRR 236

Query: 170 NAL 172
           N L
Sbjct: 237 NDL 239

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea var. alboglabra (taxid: 3714)

>sp|Q96355|1AP1_BRAOT Floral homeotic protein APETALA 1-1 OS=Brassica oleracea var. italica GN=1AP1 PE=2 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 126/183 (68%), Gaps = 17/183 (9%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           ME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S 
Sbjct: 63  MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSP 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+D+ LK IRSRKNQLM  S++ELQ+K+K ++EQN++L+K++KE+EK+L  +
Sbjct: 123 KELQNLEQQLDTALKHIRSRKNQLMYDSVNELQRKEKAIQEQNSMLSKQIKEREKVLMAQ 182

Query: 121 AQCREQQQQLNHDWN-----------SSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRA 169
              +EQ  Q NH  N             + +++    +    MGG   EED   P   R 
Sbjct: 183 ---QEQWDQQNHGQNMPSPPPPQQHQIQHPYMLSHQPSPFLNMGGLYQEED---PMAMRR 236

Query: 170 NAL 172
           N L
Sbjct: 237 NDL 239

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea var. italica (taxid: 36774)

>sp|Q41276|AP1_SINAL Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1

 Score =  154 bits (388), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 126/181 (69%), Gaps = 15/181 (8%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           ME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S 
Sbjct: 63  MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSS 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+D+ LK IRSRKNQLM  SI+ELQ+K+K ++EQN++L+K++KE+EK+L  +
Sbjct: 123 KELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQ 182

Query: 121 AQCREQQQQLNHDWN---------SSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANA 171
              +EQ  Q NH  N           + +++    +    MGG   EED   P   R N 
Sbjct: 183 ---QEQWDQQNHGHNMPPPPPPQQIQHPYMLSHQPSPFLNMGGLYQEED---PMEMRRND 236

Query: 172 L 172
           L
Sbjct: 237 L 237

Controls floral meristem identity. Is also required for normal development of sepals and petals. Is required for the transition of an influorescence meristem into a floral meristem. Interacts with LEAFY.

Sinapis alba (taxid: 3728)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
116078099	244	MADS-box protein [Citrus unshiu]	1.0	0.745	1.0	1e-101
358364703	245	APETALA1 [Litchi chinensis] gi|373103945	0.972	0.722	0.663	2e-55
78127315	255	MdMads2.1 protein [Malus x domestica]	1.0	0.713	0.609	1e-53
3947985	255	MADS-box protein 2 [Malus x domestica]	1.0	0.713	0.598	5e-53
1483232	244	MADS5 protein [Betula pendula]	0.967	0.721	0.668	3e-52
302398895	253	MADS domain class transcription factor [	0.989	0.711	0.598	4e-51
78127313	255	MdMads2.2 protein [Malus x domestica]	0.983	0.701	0.579	6e-51
449439351	261	PREDICTED: agamous-like MADS-box protein	0.989	0.689	0.576	2e-49
148540534	243	MADS-box transcription factor FUL-like 2	0.967	0.724	0.586	9e-49
269314027	239	MADS-box transcription factor 3 [Hevea b	0.956	0.728	0.635	9e-49

>gi|116078099|dbj|BAF34913.1| MADS-box protein [Citrus unshiu]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/182 (100%), Positives = 182/182 (100%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL
Sbjct: 63  MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE
Sbjct: 123 KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 182

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRH 180
           AQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRH
Sbjct: 183 AQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRH 242

Query: 181 LH 182
           LH
Sbjct: 243 LH 244

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358364703|gb|AEU08959.1| APETALA1 [Litchi chinensis] gi|373103945|gb|AEY55406.1| APETALA1-like protein, partial [Litchi chinensis]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 151/187 (80%), Gaps = 10/187 (5%)

Query: 1   MERILERYERYCYAERQLQANEIEP-NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLS 59
           MERILERYERY Y +RQL ANE+EP NG+WTLE++KLKAR+EVLQRNQKH+MGEDL  LS
Sbjct: 63  MERILERYERYSYNDRQLIANEVEPQNGSWTLEHAKLKARVEVLQRNQKHYMGEDLDSLS 122

Query: 60  LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQ 119
           LKELQS+EQQ+DS LK IR+RKNQLM +SIS+LQKKDKLL+EQNNLLAKKVKEKEK ++Q
Sbjct: 123 LKELQSLEQQLDSALKHIRTRKNQLMFESISDLQKKDKLLQEQNNLLAKKVKEKEKTITQ 182

Query: 120 EAQCREQQQQLNHDWNSSNVHL---MQTLTNS-SYQMGGGSGEEDEDTPTGHRANALLPA 175
           +     Q +Q N   NSS + L    Q+L NS +YQM   SG +D++TP  +RAN +LP 
Sbjct: 183 QQ----QWEQQNPGPNSSTILLGQPPQSLNNSATYQMARTSGGDDDETPQ-NRANTILPP 237

Query: 176 WMLRHLH 182
           WMLR+L+
Sbjct: 238 WMLRNLN 244

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78127315|gb|ABB22023.1| MdMads2.1 protein [Malus x domestica]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 146/192 (76%), Gaps = 10/192 (5%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERYERY Y ERQL AN+ E  G+WTLE++KLKAR+EVLQRNQ+H+MGEDL  LSL
Sbjct: 63  MERILERYERYSYTERQLLANDNESTGSWTLEHAKLKARVEVLQRNQRHYMGEDLQSLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+DS LK IRSRKNQ+M +SISELQKKDK L+EQNNLLAKKVKEKE  ++Q+
Sbjct: 123 KELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAKKVKEKENAVAQQ 182

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTL---TNSSYQ-------MGGGSGEEDEDTPTGHRAN 170
           AQ    Q+Q  +  +S     +Q+L   + S+YQ       + G + +  ++TPT HR N
Sbjct: 183 AQLEHVQEQRLNSSSSLLPRALQSLNFGSGSNYQAIRSSEGIPGDNQQYGDETPTPHRPN 242

Query: 171 ALLPAWMLRHLH 182
            LLPAWMLRHL+
Sbjct: 243 MLLPAWMLRHLN 254

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3947985|gb|AAC83170.1| MADS-box protein 2 [Malus x domestica]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 146/192 (76%), Gaps = 10/192 (5%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERYERY Y ERQL AN+ E  G+WTLE++KLKAR+EVLQRNQ+H+MGEDL  LSL
Sbjct: 63  MERILERYERYSYTERQLLANDNESTGSWTLEHAKLKARVEVLQRNQRHYMGEDLQSLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+DS LK IRSRKNQ+M +SISELQKKDK L+EQNNLLAKKVKEKE  ++Q+
Sbjct: 123 KELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAKKVKEKENAVAQQ 182

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTL---TNSSYQ-------MGGGSGEEDEDTPTGHRAN 170
           AQ    Q+Q  +  +S     +Q+L   + S+YQ       + G + +  ++TPT HR N
Sbjct: 183 AQLEHVQEQRLNSSSSLLPRALQSLNFGSGSNYQAIRSSEGIPGDNQQYGDETPTPHRPN 242

Query: 171 ALLPAWMLRHLH 182
            LLPAW++RHL+
Sbjct: 243 MLLPAWIVRHLN 254

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1483232|emb|CAA67969.1| MADS5 protein [Betula pendula]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 148/187 (79%), Gaps = 11/187 (5%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERYERY YA+RQL AN++E NG+WTLE++KLKAR+EVLQRNQKHF+GEDL  LSL
Sbjct: 63  MERILERYERYSYADRQLLANDLEQNGSWTLEHAKLKARIEVLQRNQKHFVGEDLDSLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+DS LK IRSRKNQLM +SISELQ+KDK L+EQNN+LAKKVKEKEK L+Q+
Sbjct: 123 KELQNLEQQLDSALKHIRSRKNQLMYESISELQRKDKALQEQNNVLAKKVKEKEKELAQQ 182

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGG-----GSGEEDEDTPTGHRANALLPA 175
           AQ  +Q    +H  +S    L Q L  SS  +GG     G+G  DE TP  HRANALLP 
Sbjct: 183 AQWEQQ----SHTLDSVPSLLPQPL-QSSLNIGGSQQARGNGRVDEGTPP-HRANALLPP 236

Query: 176 WMLRHLH 182
           WMLRHL+
Sbjct: 237 WMLRHLN 243

Source: Betula pendula

Species: Betula pendula

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398895|gb|ADL36742.1| MADS domain class transcription factor [Malus x domestica]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 144/192 (75%), Gaps = 12/192 (6%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERYERY Y ERQL AN+ E  G+WTLE++KLKAR+EVLQRNQ+H+MGEDL  LSL
Sbjct: 63  MERILERYERYSYTERQLLANDNESTGSWTLEHAKLKARVEVLQRNQRHYMGEDLQSLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+DS LK IRSRKNQ+M +SISELQKKDK L+EQNNLLAK  KEKE  ++Q+
Sbjct: 123 KELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAK--KEKENAVAQQ 180

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTL---TNSSYQ-------MGGGSGEEDEDTPTGHRAN 170
           AQ    Q+Q  +  +S     +Q+L   + S+YQ       + G + +  ++TPT HR N
Sbjct: 181 AQLEHVQEQRLNSSSSLLPRALQSLNFGSGSNYQAIRSSEGIPGDNQQYGDETPTPHRPN 240

Query: 171 ALLPAWMLRHLH 182
            LLPAWMLRHL+
Sbjct: 241 MLLPAWMLRHLN 252

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78127313|gb|ABB22022.1| MdMads2.2 protein [Malus x domestica]

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 140/195 (71%), Gaps = 16/195 (8%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERYERY +AERQL AN+ E  GNWTLE++KLKAR+EVLQRNQ H+MGEDL  LS 
Sbjct: 63  MERILERYERYSHAERQLLANDNESTGNWTLEHAKLKARVEVLQRNQSHYMGEDLQILSF 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           +ELQ++EQQ+DS L+ IRSRKNQ+M +SISELQKKDK L+EQNNLLAK VKEKEK ++ +
Sbjct: 123 QELQNLEQQLDSALRRIRSRKNQVMYESISELQKKDKALQEQNNLLAKNVKEKEKAVTSQ 182

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTL-------------TNSSYQMGGGSGEEDEDTPTGH 167
           AQ    Q+Q     +SS+  L Q L               SS  + G + ++ ++T T H
Sbjct: 183 AQLDHAQKQ---SLDSSSTLLPQELQYLNFSRSNYHQAIRSSNGISGDNQQDGDETATPH 239

Query: 168 RANALLPAWMLRHLH 182
           R N LLP WMLRHL+
Sbjct: 240 RPNTLLPPWMLRHLN 254

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439351|ref|XP_004137449.1| PREDICTED: agamous-like MADS-box protein AGL8 homolog [Cucumis sativus]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 135/182 (74%), Gaps = 2/182 (1%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           ME+ILERYERY YAER+L AN+ +PNGNWTLE++KLKAR+EVLQ+N +HFMGEDL  LSL
Sbjct: 76  MEKILERYERYSYAERRLVANDSQPNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSL 135

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQ++EQQ+DS LK IR+RKNQLM +SI+EL+KK K+L+E NN+L KK+KEKEK  +  
Sbjct: 136 KELQNIEQQLDSALKHIRARKNQLMHESITELKKKGKVLQEHNNILGKKIKEKEKSRAHN 195

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTLTNSSYQMGGGSG--EEDEDTPTGHRANALLPAWML 178
            Q  +QQ Q ++   SS + L Q   + S      +   EE+E  P   R++ LLP WML
Sbjct: 196 PQMEQQQHQNSNVIESSPLLLPQPFQSLSMSCPYPTHGLEENESAPNHERSDTLLPPWML 255

Query: 179 RH 180
           RH
Sbjct: 256 RH 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148540534|gb|ABQ85945.1| MADS-box transcription factor FUL-like 2 [Trochodendron aralioides]

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 139/186 (74%), Gaps = 10/186 (5%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERYERY YAER+L A + E  G+W+LEY+KLKAR EVLQRNQ+HF+GEDL  LSL
Sbjct: 63  MERILERYERYSYAERELVAIDAESQGSWSLEYTKLKARFEVLQRNQRHFLGEDLGSLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           +ELQ+ EQQ+DS LKLIRSRK+QLM +SISELQ+K+K L++QNNLLA+K+KEK K L+Q+
Sbjct: 123 RELQNFEQQLDSALKLIRSRKSQLMYESISELQRKEKALQQQNNLLAEKLKEK-KALAQQ 181

Query: 121 AQCREQQQQLNHDWNSSNVHLMQTL----TNSSYQMGGGSGEEDEDTPTGHRANALLPAW 176
           A      +Q N   N S   L Q+L     + +YQ   G+G EDE +   +R N L+P W
Sbjct: 182 AHW----EQGNQVQNPSTFLLPQSLPSLNISGTYQ-ARGTGGEDEGSQPHNRTNTLMPPW 236

Query: 177 MLRHLH 182
           MLRH++
Sbjct: 237 MLRHMN 242

Source: Trochodendron aralioides

Species: Trochodendron aralioides

Genus: Trochodendron

Family: Trochodendraceae

Order: Trochodendrales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269314027|gb|ACZ36916.1| MADS-box transcription factor 3 [Hevea brasiliensis]

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 117/184 (63%), Positives = 137/184 (74%), Gaps = 10/184 (5%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
           MERILERYERY YA+RQL A   E NG+WTLE++KLKARMEVLQRNQ+HFMGEDL  LSL
Sbjct: 63  MERILERYERYSYADRQLVATGSETNGSWTLEHAKLKARMEVLQRNQRHFMGEDLDTLSL 122

Query: 61  KELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKLLSQE 120
           KELQSVEQQIDS LK IRSRKNQLM +SI+ELQKK K L+EQNN  AK VKEKEK     
Sbjct: 123 KELQSVEQQIDSALKHIRSRKNQLMYESIAELQKKSKALQEQNNQFAKTVKEKEKEKEIA 182

Query: 121 AQCREQQQQLNHDWNSSNV--HLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWML 178
            Q +++QQ  NH  +SS V    MQ+L         G+ +EDE TP  H ANA+LP+WM+
Sbjct: 183 QQNQKEQQ--NHIIDSSTVLPPPMQSLNIR------GNRDEDETTPMQHLANAVLPSWMI 234

Query: 179 RHLH 182
            +L+
Sbjct: 235 PYLN 238

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2173522	242	AGL8 "AGAMOUS-like 8" [Arabido	0.494	0.371	0.611	3.8e-31
UNIPROTKB|D2T2G0	238	gsqua2 "GSQUA2 protein" [Gerbe	0.494	0.378	0.633	7.7e-31
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.494	0.365	0.611	4.7e-29
TAIR|locus:2028830	255	CAL "CAULIFLOWER" [Arabidopsis	0.494	0.352	0.586	2.2e-27
TAIR|locus:2033273	256	AP1 "AT1G69120" [Arabidopsis t	0.494	0.351	0.633	3.5e-27
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.494	0.337	0.611	7.4e-27
UNIPROTKB|Q0D4T4	249	MADS18 "MADS-box transcription	0.494	0.361	0.477	3.9e-24
UNIPROTKB|Q9ZS25	210	gsqua1 "MADS-box protein, GSQU	0.494	0.428	0.533	1.3e-20
TAIR|locus:2102871	249	AGL79 "AGAMOUS-like 79" [Arabi	0.494	0.361	0.477	1.4e-20
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	0.489	0.363	0.433	8.1e-19

TAIR|locus:2173522 AGL8 "AGAMOUS-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 55/90 (61%), Positives = 75/90 (83%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             MERILERY+RY Y+++QL   ++  + NW LE++KLKAR+EVL++N+++FMGEDL  LSL
Sbjct:    63 MERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSL 122

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             KELQS+E Q+D+ +K IRSRKNQ M +SIS
Sbjct:   123 KELQSLEHQLDAAIKSIRSRKNQAMFESIS 152

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0010154 "fruit development" evidence=IMP

UNIPROTKB|D2T2G0 gsqua2 "GSQUA2 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 293 (108.2 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 57/90 (63%), Positives = 75/90 (83%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             M+ ILERYERY YAE+ L A E E  G+WTLE SKL+A++EVL++N KH++GEDL  L+L
Sbjct:    63 MDAILERYERYSYAEKLLTAPETETQGSWTLESSKLRAKIEVLEKNIKHYVGEDLEPLNL 122

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             +ELQSVEQQI++ LK +R+RKNQ+M +SIS
Sbjct:   123 RELQSVEQQIETALKRVRTRKNQVMHESIS 152

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 283 (104.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 55/90 (61%), Positives = 72/90 (80%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             M++ILERYERY YAE+ L + E +  GNW  EY KLKA++E +Q+ QKH MGEDL  L+L
Sbjct:    63 MDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNL 122

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             KELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:   123 KELQQLEQQLENSLKHIRSRKSQLMLESIN 152

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2028830 CAL "CAULIFLOWER" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 54/92 (58%), Positives = 78/92 (84%)

Query:     1 MERILERYERYCYAERQLQANEIEPNG--NWTLEYSKLKARMEVLQRNQKHFMGEDLADL 58
             ME++LERYERY YAERQL A +   N   NW++EYS+LKA++E+L+RNQ+H++GE+L  +
Sbjct:    63 MEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPM 122

Query:    59 SLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             SLK+LQ++EQQ+++ LK IRSRKNQLM +S++
Sbjct:   123 SLKDLQNLEQQLETALKHIRSRKNQLMNESLN 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010582 "floral meristem determinacy" evidence=IEP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2033273 AP1 "AT1G69120" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 57/90 (63%), Positives = 78/90 (86%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             ME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S 
Sbjct:    63 MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSP 122

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             KELQ++EQQ+D+ LK IR+RKNQLM +SI+
Sbjct:   123 KELQNLEQQLDTALKHIRTRKNQLMYESIN 152

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0009908 "flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 275 (101.9 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 55/90 (61%), Positives = 69/90 (76%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             M++ILERYERY YAE+ L + E E  GNW  EY KLKA++E +Q+  KH MGEDL  L+L
Sbjct:    63 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNL 122

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             KELQ +EQQ++S LK I SRK+ LML+SIS
Sbjct:   123 KELQQLEQQLESSLKHIISRKSHLMLESIS 152

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0D4T4 MADS18 "MADS-box transcription factor 18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 218 (81.8 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 43/90 (47%), Positives = 62/90 (68%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             ME ILERY+RY + ER +     E   NW  EY  LK++++ LQ++Q+  +GE L  L++
Sbjct:    63 MEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTI 122

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             KELQ +E Q++  LK IRS+KNQL+ +SIS
Sbjct:   123 KELQQLEHQLEYSLKHIRSKKNQLLFESIS 152

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS25 gsqua1 "MADS-box protein, GSQUA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 48/90 (53%), Positives = 67/90 (74%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             ME IL+RYE+Y   +RQ  A + +    WT E +KLK+R E+LQRN +H+MGED+  L L
Sbjct:    63 MENILDRYEQYSNIDRQHVAVDTDSPIRWTQECNKLKSRAELLQRNLRHYMGEDIESLGL 122

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             +E+Q++EQQ+D+ LK I S+KNQL+ QSIS
Sbjct:   123 REIQNLEQQLDTALKRIHSKKNQLLHQSIS 152

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2102871 AGL79 "AGAMOUS-like 79" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 43/90 (47%), Positives = 63/90 (70%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             MERIL+RYER  YA + +    ++  G  + E SKL   ++VLQR+ +H  GE++  LS+
Sbjct:    63 MERILDRYERSAYAGQDIPTPNLDSQGECSTECSKLLRMIDVLQRSLRHLRGEEVDGLSI 122

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             ++LQ VE Q+D+ LK  RSRKNQLM++SI+
Sbjct:   123 RDLQGVEMQLDTALKKTRSRKNQLMVESIA 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 188 (71.2 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
 Identities = 39/90 (43%), Positives = 60/90 (66%)

Query:     1 MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSL 60
             M + LE+Y++  YA      +  +   N+  EY +LKAR+E+LQR+Q++ +GEDL  L+ 
Sbjct:    63 MMKTLEKYQQCSYASLDPMQSANDTQNNYH-EYLRLKARVELLQRSQRNLLGEDLGSLNS 121

Query:    61 KELQSVEQQIDSGLKLIRSRKNQLMLQSIS 90
             KEL+ +E Q+DS LK IRS+K Q ML  ++
Sbjct:   122 KELEQLEHQLDSSLKQIRSKKTQHMLDQLA 151

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38876	AGL8_ARATH	No assigned EC number	0.5217	0.9285	0.6983	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam01486	100	pfam01486, K-box, K-box region	4e-26

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 95.7 bits (239), Expect = 4e-26
 Identities = 49/100 (49%), Positives = 67/100 (67%)

Query: 13  YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDS 72
           Y +            N   E +KLK + E LQR Q+H +GEDL  LSLKELQ +EQQ+++
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 73  GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKE 112
           GLK IRSRKN+L+L  I ELQKK++ L+E+N  L +K++E
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.91
KOG0014	195	consensus MADS box transcription factor [Transcrip	97.53
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.26
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	92.47
PRK15422	79	septal ring assembly protein ZapB; Provisional	91.62
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	88.79
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	87.63
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.36
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	84.21
PRK13169	110	DNA replication intiation control protein YabA; Re	84.09
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	81.78
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	81.13
smart00030	206	CLb CLUSTERIN Beta chain.	80.35
COG2433	652	Uncharacterized conserved protein [Function unknow	80.13

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.91  E-value=5.5e-24  Score=156.54  Aligned_cols=87  Identities=49%  Similarity=0.741  Sum_probs=84.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030134           26 NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNL  105 (182)
Q Consensus        26 ~~~~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~  105 (182)
                      .+.|..|+.+|+.+++.|+..+|||+||||++||++||++||++|+.||++||+||+++|+++|..|++|++.|.++|..
T Consensus        14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~   93 (100)
T PF01486_consen   14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQ   93 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 030134          106 LAKKVKE  112 (182)
Q Consensus       106 L~~kl~e  112 (182)
                      |+.++.|
T Consensus        94 L~~~~~e  100 (100)
T PF01486_consen   94 LRQKIEE  100 (100)
T ss_pred             HHHHhcC
Confidence            9999864

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=97.53  E-value=1.7e-05  Score=63.67  Aligned_cols=75  Identities=39%  Similarity=0.389  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHHHHHH---hcccCCCCCCCCCH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Q 030134           29 WTLEYSKLKARMEVLQRN---QKHFMGEDLADLSL-KELQSVEQQIDSGLKLIRSRKNQLMLQSIS-ELQKKDKLLKEQN  103 (182)
Q Consensus        29 ~~~E~~~Lk~~ie~Lq~~---~R~l~GEdL~~Ls~-kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~-~LqkKe~~L~eeN  103 (182)
                      +..+...++...+.|+..   +|+++|++|.++++ .+|..+|.+|+.++..+|+.+...+.+++. .++.++..+...|
T Consensus       112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (195)
T KOG0014|consen  112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN  191 (195)
T ss_pred             hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence            455666777777877754   99999999999999 999999999999999999999999998887 6666665554443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.26  E-value=0.37  Score=33.50  Aligned_cols=52  Identities=27%  Similarity=0.400  Sum_probs=39.6

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134           58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE  114 (182)
Q Consensus        58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~  114 (182)
                      +|++-|.+||..+..|+..|..     +..++.+|+.+-..|.++|..|+.......
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5788999999999999998865     445677888887777788887777665544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.47  E-value=2.5  Score=29.36  Aligned_cols=53  Identities=21%  Similarity=0.376  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134           58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK  115 (182)
Q Consensus        58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~  115 (182)
                      +|++=|.+||..+..|+.-|     .|+.-+|++|+.|...|..+-..++........
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL~~   53 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREALER   53 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence            57888999999999999876     577778888888888777777766666555443

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=91.62  E-value=3.3  Score=29.30  Aligned_cols=63  Identities=22%  Similarity=0.395  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HH-HHHHHHhHHhhhhh
Q 030134           58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKK---VK-EKEKLLSQEAQCRE  125 (182)
Q Consensus        58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k---l~-e~~~~~~~~~~w~~  125 (182)
                      +|++=|.+||..+..|+.-|     .++.-+|++|+.|-..|.+++..++.-   |. ++......+..|+.
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe   67 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE   67 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999877     455567788887777777776664333   21 12223334556764

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=88.79  E-value=0.79  Score=30.70  Aligned_cols=31  Identities=29%  Similarity=0.464  Sum_probs=23.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 030134           49 HFMGEDLADLSLKELQSVEQQIDSGLKLIRS   79 (182)
Q Consensus        49 ~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRs   79 (182)
                      +..|+||+.||+.||..==..|+.=+.++|+
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999998755555555555543

The function of this family is unknown.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=87.63  E-value=0.97  Score=33.85  Aligned_cols=26  Identities=38%  Similarity=0.594  Sum_probs=21.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030134           87 QSISELQKKDKLLKEQNNLLAKKVKE  112 (182)
Q Consensus        87 ~qi~~LqkKe~~L~eeN~~L~~kl~e  112 (182)
                      .++..|++|.+.|+|||+.|+-|++-
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999999854

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.36  E-value=16  Score=31.94  Aligned_cols=87  Identities=23%  Similarity=0.340  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHH
Q 030134           32 EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM--LQSISELQKKDKLLKEQNNLLAKK  109 (182)
Q Consensus        32 E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm--~~qi~~LqkKe~~L~eeN~~L~~k  109 (182)
                      .+..|+.++..|+...     .+++.++..+|..|-..|...=..|..+|..+-  ..++..++.+...+.++-..+...
T Consensus       185 ~~~~L~~e~~~Lk~~~-----~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e  259 (325)
T PF08317_consen  185 RKAELEEELENLKQLV-----EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE  259 (325)
T ss_pred             HHHHHHHHHHHHHHHH-----hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555444433     338889999999999999998888888887754  577788888888888888888888


Q ss_pred             HHHHHHHHhHHhhh
Q 030134          110 VKEKEKLLSQEAQC  123 (182)
Q Consensus       110 l~e~~~~~~~~~~w  123 (182)
                      |.+.++.......|
T Consensus       260 I~e~~~~~~~~r~~  273 (325)
T PF08317_consen  260 IAEAEKIREECRGW  273 (325)
T ss_pred             HHHHHHHHHHhcCC
Confidence            88776554433334

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=84.21  E-value=9.4  Score=28.41  Aligned_cols=50  Identities=30%  Similarity=0.427  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134           60 LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE  114 (182)
Q Consensus        60 ~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~  114 (182)
                      ++.|.+||++|..-+..|..-|.++     .+|-..-..|.-||..|+..|.+..
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567788888877776666655433     3444444556666666666665543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=84.09  E-value=8.9  Score=28.74  Aligned_cols=49  Identities=29%  Similarity=0.422  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030134           60 LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEK  113 (182)
Q Consensus        60 ~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~  113 (182)
                      ++-|.+||+|+..-+..|..-|.++     .+|-..-..|.-||.-|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4568889999988888777766543     345555666777777777777764

>smart00787 Spc7 Spc7 kinetochore protein

Probab=81.78  E-value=18  Score=31.72  Aligned_cols=87  Identities=22%  Similarity=0.280  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134           33 YSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM--LQSISELQKKDKLLKEQNNLLAKKV  110 (182)
Q Consensus        33 ~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~qlm--~~qi~~LqkKe~~L~eeN~~L~~kl  110 (182)
                      +..|+.++..|+...     ++++.++..||..+-..|..-...|..++.++.  .+++..+..+.....+.-..+...|
T Consensus       181 ~~~L~~e~~~L~~~~-----~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      181 KDALEEELRQLKQLE-----DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHHhH-----HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444332     678889999999999999999988888777754  5777777777777777777777777


Q ss_pred             HHHHHHHhHHhhhh
Q 030134          111 KEKEKLLSQEAQCR  124 (182)
Q Consensus       111 ~e~~~~~~~~~~w~  124 (182)
                      .+.++.......|.
T Consensus       256 ~~ae~~~~~~r~~t  269 (312)
T smart00787      256 AEAEKKLEQCRGFT  269 (312)
T ss_pred             HHHHHHHHhcCCCC
Confidence            77666544433443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=81.13  E-value=4.1  Score=27.24  Aligned_cols=28  Identities=32%  Similarity=0.634  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 030134           83 QLMLQSISELQKKDKLLKEQNNLLAKKV  110 (182)
Q Consensus        83 qlm~~qi~~LqkKe~~L~eeN~~L~~kl  110 (182)
                      +.+.++|.+|..+...|..||..|+...
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4556677777777777777777766543

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>smart00030 CLb CLUSTERIN Beta chain

Probab=80.35  E-value=15  Score=30.51  Aligned_cols=75  Identities=20%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHhHHh
Q 030134           53 EDLADLSLKELQSVEQQIDSGLKLIRSRKN---------QLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK--LLSQEA  121 (182)
Q Consensus        53 EdL~~Ls~kEL~~LE~qLe~sL~~IRsrK~---------qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~--~~~~~~  121 (182)
                      ++|..||..-=.-+.+++++||+-|..-|+         +-|+..+++.+++-......-+....||.|.+.  .....+
T Consensus         7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~a   86 (206)
T smart00030        7 NELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMA   86 (206)
T ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666788999999998876554         445666666665544444444456777777554  344667


Q ss_pred             hhhhhh
Q 030134          122 QCREQQ  127 (182)
Q Consensus       122 ~w~~~~  127 (182)
                      .|+.|-
T Consensus        87 lWeECK   92 (206)
T smart00030       87 LWEECK   92 (206)
T ss_pred             HHHHhH
Confidence            899764

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.13  E-value=22  Score=34.24  Aligned_cols=85  Identities=21%  Similarity=0.299  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHH
Q 030134           29 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIR-----SRKNQLMLQSISELQKKDKLLKEQN  103 (182)
Q Consensus        29 ~~~E~~~Lk~~ie~Lq~~~R~l~GEdL~~Ls~kEL~~LE~qLe~sL~~IR-----srK~qlm~~qi~~LqkKe~~L~eeN  103 (182)
                      ...++.++...++.|+...++|..+- +.|- +++..||.+|+..-++++     .|+-+.+...|..|+++...-...-
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~~-ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v  497 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKREL-EELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV  497 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555556666665555544321 1111 788999999998888877     4566678888888888877777777


Q ss_pred             HHHHHHHHHHHH
Q 030134          104 NLLAKKVKEKEK  115 (182)
Q Consensus       104 ~~L~~kl~e~~~  115 (182)
                      ..|..++.+..+
T Consensus       498 e~L~~~l~~l~k  509 (652)
T COG2433         498 EELERKLAELRK  509 (652)
T ss_pred             HHHHHHHHHHHH
Confidence            778888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	4e-04

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 3/33 (9%), Positives = 12/33 (36%)

Query: 1   MERILERYERYCYAERQLQANEIEPNGNWTLEY 33
           ++ ++         +  L + +  P  + T + 
Sbjct: 70  LQPMITSETGKALIQTCLNSPDSPPRSDPTTDQ 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.26
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	83.52
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	83.27
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	83.08
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	81.93
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	80.46
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	80.44

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.26  E-value=0.29  Score=33.87  Aligned_cols=63  Identities=22%  Similarity=0.375  Sum_probs=45.8

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHhHHhhhhh
Q 030134           58 LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVK----EKEKLLSQEAQCRE  125 (182)
Q Consensus        58 Ls~kEL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~----e~~~~~~~~~~w~~  125 (182)
                      +|++=|.+||..++.|+..|     .+|.-+|++|+.|-..|..+|..++..-.    ++..-...+..|..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~   69 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE   69 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999876     56667888888888888888887655322    22333334556764

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=83.52  E-value=4  Score=26.46  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=31.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134           73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE  114 (182)
Q Consensus        73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~  114 (182)
                      |-.+.|.||.+.+    .+|..+...|..+|..|...+....
T Consensus        20 AArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           20 AARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677888887655    7899999999999999999886654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=83.27  E-value=6  Score=25.41  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030134           73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEK  115 (182)
Q Consensus        73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~  115 (182)
                      |-.+-|.||.+.+    .+|..+...|..+|..|...|.....
T Consensus        13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~~   51 (63)
T 2wt7_A           13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLLK   51 (63)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456688887665    78999999999999999999977554

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=83.08  E-value=6.3  Score=25.05  Aligned_cols=40  Identities=20%  Similarity=0.191  Sum_probs=32.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134           73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL  116 (182)
Q Consensus        73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~  116 (182)
                      |-.+-|.||.+.+    ..|..+...|..+|..|..+|......
T Consensus        12 AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~e   51 (61)
T 1t2k_D           12 AASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRNE   51 (61)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556688887655    789999999999999999999876543

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=81.93  E-value=5.7  Score=25.00  Aligned_cols=38  Identities=21%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030134           73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKE  114 (182)
Q Consensus        73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~  114 (182)
                      |-.+-|.||...+    .+|..+...|..+|..|..++....
T Consensus        12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L~   49 (55)
T 1dh3_A           12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKALK   49 (55)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677776544    7889999999999999999987654

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=80.46  E-value=9  Score=24.67  Aligned_cols=40  Identities=20%  Similarity=0.187  Sum_probs=31.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134           73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL  116 (182)
Q Consensus        73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~  116 (182)
                      |-.+-|.+|-+-    +..|..+...|..+|..|..+|......
T Consensus        13 AA~R~R~KKk~~----~~~le~~~~~L~~~N~~L~~~i~~L~~E   52 (63)
T 1ci6_A           13 AATRYRQKKRAE----QEALTGECKELEKKNEALKERADSLAKE   52 (63)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677777544    4788889999999999999999876654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=80.44  E-value=8.9  Score=24.43  Aligned_cols=40  Identities=30%  Similarity=0.277  Sum_probs=32.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030134           73 GLKLIRSRKNQLMLQSISELQKKDKLLKEQNNLLAKKVKEKEKL  116 (182)
Q Consensus        73 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~kl~e~~~~  116 (182)
                      |-.+-|.||.+.+    .+|..+...|..+|..|..++......
T Consensus        12 AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~~e   51 (62)
T 1jnm_A           12 AASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLREQ   51 (62)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788887665    799999999999999999999776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00